Multiple sequence alignment - TraesCS7B01G159200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G159200 chr7B 100.000 2894 0 0 811 3704 216674810 216677703 0.000000e+00 5345.0
1 TraesCS7B01G159200 chr7B 100.000 723 0 0 1 723 216674000 216674722 0.000000e+00 1336.0
2 TraesCS7B01G159200 chr7B 81.273 1100 184 12 1627 2720 223664713 223663630 0.000000e+00 870.0
3 TraesCS7B01G159200 chr7D 97.325 2243 54 4 811 3049 241091421 241093661 0.000000e+00 3805.0
4 TraesCS7B01G159200 chr7D 80.441 1815 321 20 920 2720 394387586 394385792 0.000000e+00 1354.0
5 TraesCS7B01G159200 chr7D 95.789 475 12 2 3232 3704 241094438 241094906 0.000000e+00 760.0
6 TraesCS7B01G159200 chr7D 87.129 101 6 4 3113 3211 241094026 241094121 1.410000e-19 108.0
7 TraesCS7B01G159200 chr7D 95.349 43 0 1 3070 3112 241094014 241094054 2.390000e-07 67.6
8 TraesCS7B01G159200 chr7D 100.000 32 0 0 3207 3238 241094237 241094268 3.990000e-05 60.2
9 TraesCS7B01G159200 chr7D 94.737 38 1 1 686 723 538990631 538990667 1.440000e-04 58.4
10 TraesCS7B01G159200 chr7D 85.714 56 5 3 667 722 442787757 442787809 5.170000e-04 56.5
11 TraesCS7B01G159200 chr7A 95.438 2170 75 6 891 3050 257364168 257362013 0.000000e+00 3437.0
12 TraesCS7B01G159200 chr7A 100.000 38 0 0 811 848 257364224 257364187 1.850000e-08 71.3
13 TraesCS7B01G159200 chr5B 90.682 2286 176 20 815 3070 380651260 380653538 0.000000e+00 3007.0
14 TraesCS7B01G159200 chr5B 94.994 1778 58 16 958 2709 380321610 380323382 0.000000e+00 2761.0
15 TraesCS7B01G159200 chr5B 93.182 176 12 0 3528 3703 380328989 380329164 3.670000e-65 259.0
16 TraesCS7B01G159200 chr5B 82.018 228 16 10 3234 3459 380654004 380654208 1.770000e-38 171.0
17 TraesCS7B01G159200 chr5B 84.472 161 6 4 3092 3238 380653602 380653757 1.390000e-29 141.0
18 TraesCS7B01G159200 chr5B 95.775 71 2 1 3389 3459 380649011 380649080 3.020000e-21 113.0
19 TraesCS7B01G159200 chr5B 97.059 34 1 0 690 723 314945721 314945688 1.440000e-04 58.4
20 TraesCS7B01G159200 chr6B 94.994 1778 62 17 958 2709 232741478 232739702 0.000000e+00 2765.0
21 TraesCS7B01G159200 chr6B 89.354 1625 131 14 1476 3067 232870228 232868613 0.000000e+00 2004.0
22 TraesCS7B01G159200 chr6B 84.211 228 12 4 3234 3459 232868145 232867940 2.260000e-47 200.0
23 TraesCS7B01G159200 chr6B 83.230 161 8 6 3092 3238 232868547 232868392 3.000000e-26 130.0
24 TraesCS7B01G159200 chr1A 80.802 1047 172 19 1684 2720 143283611 143282584 0.000000e+00 793.0
25 TraesCS7B01G159200 chr1A 83.491 212 26 7 3467 3672 21628197 21627989 4.880000e-44 189.0
26 TraesCS7B01G159200 chr4B 87.395 238 27 3 1393 1628 637287780 637288016 1.700000e-68 270.0
27 TraesCS7B01G159200 chr4B 92.405 158 10 2 964 1120 270657857 270657701 1.340000e-54 224.0
28 TraesCS7B01G159200 chrUn 81.781 247 29 13 3467 3704 10131562 10131801 3.780000e-45 193.0
29 TraesCS7B01G159200 chr5D 86.592 179 19 4 72 249 443888376 443888550 3.780000e-45 193.0
30 TraesCS7B01G159200 chr5D 94.340 53 3 0 589 641 439440321 439440269 8.530000e-12 82.4
31 TraesCS7B01G159200 chr2B 95.192 104 5 0 538 641 214649808 214649911 8.230000e-37 165.0
32 TraesCS7B01G159200 chr2B 100.000 30 0 0 510 539 214649763 214649792 5.170000e-04 56.5
33 TraesCS7B01G159200 chr2D 94.175 103 6 0 539 641 130079192 130079294 1.380000e-34 158.0
34 TraesCS7B01G159200 chr2D 85.556 90 11 2 420 508 130070932 130071020 3.940000e-15 93.5
35 TraesCS7B01G159200 chr1D 92.523 107 7 1 536 641 221918538 221918432 6.410000e-33 152.0
36 TraesCS7B01G159200 chr1B 87.500 120 15 0 389 508 317754275 317754394 4.990000e-29 139.0
37 TraesCS7B01G159200 chr1B 95.062 81 2 2 563 641 317791637 317791717 3.880000e-25 126.0
38 TraesCS7B01G159200 chr3B 90.000 110 5 1 538 641 119419924 119419815 1.790000e-28 137.0
39 TraesCS7B01G159200 chr3B 77.820 266 19 18 249 508 119421450 119421219 1.080000e-25 128.0
40 TraesCS7B01G159200 chr3B 100.000 28 0 0 510 537 119419969 119419942 7.000000e-03 52.8
41 TraesCS7B01G159200 chr3A 91.228 57 2 1 667 723 57781198 57781145 1.430000e-09 75.0
42 TraesCS7B01G159200 chr3A 91.228 57 2 1 667 723 147525336 147525283 1.430000e-09 75.0
43 TraesCS7B01G159200 chr3D 89.474 57 4 2 667 723 407221827 407221773 1.850000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G159200 chr7B 216674000 216677703 3703 False 3340.50 5345 100.000000 1 3704 2 chr7B.!!$F1 3703
1 TraesCS7B01G159200 chr7B 223663630 223664713 1083 True 870.00 870 81.273000 1627 2720 1 chr7B.!!$R1 1093
2 TraesCS7B01G159200 chr7D 394385792 394387586 1794 True 1354.00 1354 80.441000 920 2720 1 chr7D.!!$R1 1800
3 TraesCS7B01G159200 chr7D 241091421 241094906 3485 False 960.16 3805 95.118400 811 3704 5 chr7D.!!$F3 2893
4 TraesCS7B01G159200 chr7A 257362013 257364224 2211 True 1754.15 3437 97.719000 811 3050 2 chr7A.!!$R1 2239
5 TraesCS7B01G159200 chr5B 380321610 380323382 1772 False 2761.00 2761 94.994000 958 2709 1 chr5B.!!$F1 1751
6 TraesCS7B01G159200 chr5B 380649011 380654208 5197 False 858.00 3007 88.236750 815 3459 4 chr5B.!!$F3 2644
7 TraesCS7B01G159200 chr6B 232739702 232741478 1776 True 2765.00 2765 94.994000 958 2709 1 chr6B.!!$R1 1751
8 TraesCS7B01G159200 chr6B 232867940 232870228 2288 True 778.00 2004 85.598333 1476 3459 3 chr6B.!!$R2 1983
9 TraesCS7B01G159200 chr1A 143282584 143283611 1027 True 793.00 793 80.802000 1684 2720 1 chr1A.!!$R2 1036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 643 0.104120 AGCCGAAGCCCAAACAAAAC 59.896 50.000 0.0 0.0 41.25 2.43 F
938 2375 0.768622 TCCCCACATCGTTTCTTGGT 59.231 50.000 0.0 0.0 0.00 3.67 F
1899 3345 2.415010 CTCATGGAGAGGCGGTCG 59.585 66.667 0.0 0.0 40.84 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 3431 0.173708 CTGGAGGTACTTGGACTCGC 59.826 60.0 0.0 0.0 41.55 5.03 R
2465 3917 0.615850 ACCCAGCTTCTTCCTGCTAC 59.384 55.0 0.0 0.0 37.81 3.58 R
3121 4939 1.790755 CACGTCCCGAACTGATTTCA 58.209 50.0 0.0 0.0 33.24 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.116075 ACGGGCAATTAACTAGTCATACTAA 57.884 36.000 0.00 0.00 29.00 2.24
25 26 7.558604 ACGGGCAATTAACTAGTCATACTAAA 58.441 34.615 0.00 0.00 29.00 1.85
26 27 8.042515 ACGGGCAATTAACTAGTCATACTAAAA 58.957 33.333 0.00 0.00 29.00 1.52
27 28 8.885722 CGGGCAATTAACTAGTCATACTAAAAA 58.114 33.333 0.00 0.00 29.00 1.94
40 41 9.670442 AGTCATACTAAAAATATACTCCCTCCA 57.330 33.333 0.00 0.00 0.00 3.86
43 44 9.672673 CATACTAAAAATATACTCCCTCCATGG 57.327 37.037 4.97 4.97 0.00 3.66
44 45 6.543735 ACTAAAAATATACTCCCTCCATGGC 58.456 40.000 6.96 0.00 0.00 4.40
45 46 3.703001 AAATATACTCCCTCCATGGCG 57.297 47.619 6.96 0.00 0.00 5.69
46 47 1.573108 ATATACTCCCTCCATGGCGG 58.427 55.000 14.31 14.31 0.00 6.13
47 48 0.544357 TATACTCCCTCCATGGCGGG 60.544 60.000 31.22 31.22 41.33 6.13
67 68 2.771435 CAGCATGGCGATTGAGTGA 58.229 52.632 0.00 0.00 0.00 3.41
69 70 0.463295 AGCATGGCGATTGAGTGAGG 60.463 55.000 0.00 0.00 0.00 3.86
70 71 2.020131 CATGGCGATTGAGTGAGGC 58.980 57.895 0.00 0.00 0.00 4.70
71 72 1.522355 ATGGCGATTGAGTGAGGCG 60.522 57.895 0.00 0.00 0.00 5.52
72 73 1.960040 ATGGCGATTGAGTGAGGCGA 61.960 55.000 0.00 0.00 0.00 5.54
73 74 1.880340 GGCGATTGAGTGAGGCGAG 60.880 63.158 0.00 0.00 0.00 5.03
74 75 1.139734 GCGATTGAGTGAGGCGAGA 59.860 57.895 0.00 0.00 0.00 4.04
75 76 0.869454 GCGATTGAGTGAGGCGAGAG 60.869 60.000 0.00 0.00 0.00 3.20
87 88 4.327885 CGAGAGCGATGGGTAAGC 57.672 61.111 0.00 0.00 40.82 3.09
88 89 1.658717 CGAGAGCGATGGGTAAGCG 60.659 63.158 0.00 0.00 40.82 4.68
89 90 1.437986 GAGAGCGATGGGTAAGCGT 59.562 57.895 0.00 0.00 35.78 5.07
90 91 0.595310 GAGAGCGATGGGTAAGCGTC 60.595 60.000 0.00 0.00 35.78 5.19
91 92 1.944676 GAGCGATGGGTAAGCGTCG 60.945 63.158 0.00 0.00 37.17 5.12
92 93 2.960129 GCGATGGGTAAGCGTCGG 60.960 66.667 0.00 0.00 34.85 4.79
93 94 2.802792 CGATGGGTAAGCGTCGGA 59.197 61.111 0.00 0.00 0.00 4.55
94 95 1.588139 CGATGGGTAAGCGTCGGAC 60.588 63.158 0.00 0.00 0.00 4.79
95 96 1.814527 GATGGGTAAGCGTCGGACT 59.185 57.895 6.57 0.00 0.00 3.85
96 97 0.527817 GATGGGTAAGCGTCGGACTG 60.528 60.000 6.57 1.33 0.00 3.51
97 98 0.968901 ATGGGTAAGCGTCGGACTGA 60.969 55.000 6.57 0.00 0.00 3.41
98 99 1.139095 GGGTAAGCGTCGGACTGAG 59.861 63.158 6.57 0.00 0.00 3.35
100 101 1.516603 GTAAGCGTCGGACTGAGCC 60.517 63.158 6.57 0.00 0.00 4.70
118 119 1.144057 CGATGGGCCGCTTACTTCT 59.856 57.895 0.00 0.00 0.00 2.85
119 120 1.154205 CGATGGGCCGCTTACTTCTG 61.154 60.000 0.00 0.00 0.00 3.02
121 122 0.328258 ATGGGCCGCTTACTTCTGTT 59.672 50.000 0.00 0.00 0.00 3.16
122 123 0.109723 TGGGCCGCTTACTTCTGTTT 59.890 50.000 0.00 0.00 0.00 2.83
123 124 0.803117 GGGCCGCTTACTTCTGTTTC 59.197 55.000 0.00 0.00 0.00 2.78
124 125 0.803117 GGCCGCTTACTTCTGTTTCC 59.197 55.000 0.00 0.00 0.00 3.13
125 126 1.519408 GCCGCTTACTTCTGTTTCCA 58.481 50.000 0.00 0.00 0.00 3.53
126 127 1.197036 GCCGCTTACTTCTGTTTCCAC 59.803 52.381 0.00 0.00 0.00 4.02
127 128 1.804748 CCGCTTACTTCTGTTTCCACC 59.195 52.381 0.00 0.00 0.00 4.61
129 130 1.804748 GCTTACTTCTGTTTCCACCCG 59.195 52.381 0.00 0.00 0.00 5.28
130 131 2.549349 GCTTACTTCTGTTTCCACCCGA 60.549 50.000 0.00 0.00 0.00 5.14
132 133 0.250338 ACTTCTGTTTCCACCCGAGC 60.250 55.000 0.00 0.00 0.00 5.03
134 135 1.750341 TTCTGTTTCCACCCGAGCGA 61.750 55.000 0.00 0.00 0.00 4.93
135 136 1.301401 CTGTTTCCACCCGAGCGAA 60.301 57.895 0.00 0.00 0.00 4.70
136 137 0.882927 CTGTTTCCACCCGAGCGAAA 60.883 55.000 0.00 0.00 0.00 3.46
137 138 0.464013 TGTTTCCACCCGAGCGAAAA 60.464 50.000 0.00 0.00 0.00 2.29
149 150 4.552797 CGAAAAGCTCGCGCATAC 57.447 55.556 8.75 0.00 41.49 2.39
152 153 0.721718 GAAAAGCTCGCGCATACTGT 59.278 50.000 8.75 0.00 39.10 3.55
153 154 1.924524 GAAAAGCTCGCGCATACTGTA 59.075 47.619 8.75 0.00 39.10 2.74
154 155 1.560923 AAAGCTCGCGCATACTGTAG 58.439 50.000 8.75 0.00 39.10 2.74
155 156 0.456221 AAGCTCGCGCATACTGTAGT 59.544 50.000 8.75 0.00 39.10 2.73
157 158 0.847035 GCTCGCGCATACTGTAGTTC 59.153 55.000 8.75 0.00 35.78 3.01
158 159 1.797713 GCTCGCGCATACTGTAGTTCA 60.798 52.381 8.75 0.00 35.78 3.18
159 160 2.732366 CTCGCGCATACTGTAGTTCAT 58.268 47.619 8.75 0.00 0.00 2.57
165 166 3.448686 GCATACTGTAGTTCATGCGAGT 58.551 45.455 4.54 0.00 32.47 4.18
166 167 4.607955 GCATACTGTAGTTCATGCGAGTA 58.392 43.478 4.54 0.00 32.47 2.59
167 168 5.223382 GCATACTGTAGTTCATGCGAGTAT 58.777 41.667 4.54 0.00 32.47 2.12
168 169 5.343593 GCATACTGTAGTTCATGCGAGTATC 59.656 44.000 4.54 0.00 32.47 2.24
182 183 1.407979 GAGTATCGTTGGACGGGTGAT 59.592 52.381 0.27 0.00 42.81 3.06
183 184 1.136305 AGTATCGTTGGACGGGTGATG 59.864 52.381 0.27 0.00 42.81 3.07
184 185 0.462375 TATCGTTGGACGGGTGATGG 59.538 55.000 0.27 0.00 42.81 3.51
186 187 1.740296 CGTTGGACGGGTGATGGAC 60.740 63.158 0.00 0.00 38.08 4.02
187 188 1.740296 GTTGGACGGGTGATGGACG 60.740 63.158 0.00 0.00 0.00 4.79
188 189 2.949909 TTGGACGGGTGATGGACGG 61.950 63.158 0.00 0.00 0.00 4.79
190 191 2.125673 GACGGGTGATGGACGGTG 60.126 66.667 0.00 0.00 0.00 4.94
192 193 4.386951 CGGGTGATGGACGGTGCA 62.387 66.667 4.40 4.40 0.00 4.57
219 220 2.353958 ACGTCCCTCGGCAGTAGA 59.646 61.111 0.00 0.00 44.69 2.59
220 221 1.303888 ACGTCCCTCGGCAGTAGAA 60.304 57.895 0.00 0.00 44.69 2.10
221 222 1.139095 CGTCCCTCGGCAGTAGAAC 59.861 63.158 0.00 0.00 35.71 3.01
222 223 1.313812 CGTCCCTCGGCAGTAGAACT 61.314 60.000 0.00 0.00 35.71 3.01
223 224 0.896226 GTCCCTCGGCAGTAGAACTT 59.104 55.000 0.00 0.00 0.00 2.66
225 226 1.549170 TCCCTCGGCAGTAGAACTTTC 59.451 52.381 0.00 0.00 0.00 2.62
228 229 3.194968 CCCTCGGCAGTAGAACTTTCTAA 59.805 47.826 0.14 0.00 41.12 2.10
230 231 3.846360 TCGGCAGTAGAACTTTCTAAGC 58.154 45.455 12.82 12.82 41.12 3.09
235 236 4.867608 GCAGTAGAACTTTCTAAGCCAGAG 59.132 45.833 11.14 0.00 41.12 3.35
236 237 5.415221 CAGTAGAACTTTCTAAGCCAGAGG 58.585 45.833 0.14 0.00 41.12 3.69
237 238 5.186021 CAGTAGAACTTTCTAAGCCAGAGGA 59.814 44.000 0.14 0.00 41.12 3.71
238 239 5.961421 AGTAGAACTTTCTAAGCCAGAGGAT 59.039 40.000 0.14 0.00 41.12 3.24
239 240 5.351948 AGAACTTTCTAAGCCAGAGGATC 57.648 43.478 0.00 0.00 35.34 3.36
240 241 5.029474 AGAACTTTCTAAGCCAGAGGATCT 58.971 41.667 0.00 0.00 40.81 2.75
241 242 5.128663 AGAACTTTCTAAGCCAGAGGATCTC 59.871 44.000 0.00 0.00 38.78 2.75
252 253 2.478547 GAGGATCTCGTTCCGAAGAC 57.521 55.000 0.00 0.00 40.94 3.01
253 254 1.065851 GAGGATCTCGTTCCGAAGACC 59.934 57.143 0.00 0.00 40.94 3.85
255 256 1.202313 GGATCTCGTTCCGAAGACCTG 60.202 57.143 0.00 0.00 34.74 4.00
257 258 0.879765 TCTCGTTCCGAAGACCTGAC 59.120 55.000 0.00 0.00 34.74 3.51
258 259 0.109226 CTCGTTCCGAAGACCTGACC 60.109 60.000 0.00 0.00 34.74 4.02
259 260 1.080025 CGTTCCGAAGACCTGACCC 60.080 63.158 0.00 0.00 0.00 4.46
260 261 1.080025 GTTCCGAAGACCTGACCCG 60.080 63.158 0.00 0.00 0.00 5.28
261 262 1.532316 TTCCGAAGACCTGACCCGT 60.532 57.895 0.00 0.00 0.00 5.28
262 263 1.530013 TTCCGAAGACCTGACCCGTC 61.530 60.000 0.00 0.00 0.00 4.79
264 265 1.507174 CGAAGACCTGACCCGTCTC 59.493 63.158 0.00 0.00 39.69 3.36
265 266 1.507174 GAAGACCTGACCCGTCTCG 59.493 63.158 0.00 0.00 39.69 4.04
266 267 1.228490 AAGACCTGACCCGTCTCGT 60.228 57.895 0.00 0.00 39.69 4.18
267 268 0.826672 AAGACCTGACCCGTCTCGTT 60.827 55.000 0.00 0.00 39.69 3.85
268 269 1.212229 GACCTGACCCGTCTCGTTC 59.788 63.158 0.00 0.00 0.00 3.95
269 270 1.521450 GACCTGACCCGTCTCGTTCA 61.521 60.000 0.00 0.00 0.00 3.18
270 271 1.111116 ACCTGACCCGTCTCGTTCAA 61.111 55.000 0.00 0.00 0.00 2.69
271 272 0.246635 CCTGACCCGTCTCGTTCAAT 59.753 55.000 0.00 0.00 0.00 2.57
272 273 1.630148 CTGACCCGTCTCGTTCAATC 58.370 55.000 0.00 0.00 0.00 2.67
273 274 0.245539 TGACCCGTCTCGTTCAATCC 59.754 55.000 0.00 0.00 0.00 3.01
274 275 0.459759 GACCCGTCTCGTTCAATCCC 60.460 60.000 0.00 0.00 0.00 3.85
275 276 1.153429 CCCGTCTCGTTCAATCCCC 60.153 63.158 0.00 0.00 0.00 4.81
276 277 1.614241 CCCGTCTCGTTCAATCCCCT 61.614 60.000 0.00 0.00 0.00 4.79
278 279 0.179108 CGTCTCGTTCAATCCCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
279 280 1.196012 GTCTCGTTCAATCCCCTCCT 58.804 55.000 0.00 0.00 0.00 3.69
280 281 1.134670 GTCTCGTTCAATCCCCTCCTG 60.135 57.143 0.00 0.00 0.00 3.86
281 282 1.195115 CTCGTTCAATCCCCTCCTGA 58.805 55.000 0.00 0.00 0.00 3.86
282 283 1.555075 CTCGTTCAATCCCCTCCTGAA 59.445 52.381 0.00 0.00 0.00 3.02
283 284 1.982226 TCGTTCAATCCCCTCCTGAAA 59.018 47.619 0.00 0.00 31.21 2.69
284 285 2.084546 CGTTCAATCCCCTCCTGAAAC 58.915 52.381 0.00 0.00 31.21 2.78
285 286 2.552155 CGTTCAATCCCCTCCTGAAACA 60.552 50.000 0.00 0.00 31.21 2.83
287 288 2.631384 TCAATCCCCTCCTGAAACAGA 58.369 47.619 0.00 0.00 32.44 3.41
288 289 3.192944 TCAATCCCCTCCTGAAACAGAT 58.807 45.455 0.00 0.00 32.44 2.90
289 290 3.200825 TCAATCCCCTCCTGAAACAGATC 59.799 47.826 0.00 0.00 32.44 2.75
290 291 1.195115 TCCCCTCCTGAAACAGATCG 58.805 55.000 0.00 0.00 32.44 3.69
292 293 0.807667 CCCTCCTGAAACAGATCGCG 60.808 60.000 0.00 0.00 32.44 5.87
293 294 0.807667 CCTCCTGAAACAGATCGCGG 60.808 60.000 6.13 0.00 32.44 6.46
294 295 1.424493 CTCCTGAAACAGATCGCGGC 61.424 60.000 6.13 0.00 32.44 6.53
295 296 1.448540 CCTGAAACAGATCGCGGCT 60.449 57.895 6.13 0.45 32.44 5.52
296 297 0.179111 CCTGAAACAGATCGCGGCTA 60.179 55.000 6.13 0.00 32.44 3.93
297 298 1.203928 CTGAAACAGATCGCGGCTAG 58.796 55.000 6.13 0.00 32.44 3.42
298 299 0.179111 TGAAACAGATCGCGGCTAGG 60.179 55.000 6.13 0.00 0.00 3.02
299 300 0.179108 GAAACAGATCGCGGCTAGGT 60.179 55.000 6.13 0.00 0.00 3.08
300 301 0.249398 AAACAGATCGCGGCTAGGTT 59.751 50.000 6.13 2.09 0.00 3.50
301 302 0.249398 AACAGATCGCGGCTAGGTTT 59.751 50.000 6.13 0.00 0.00 3.27
302 303 0.249398 ACAGATCGCGGCTAGGTTTT 59.751 50.000 6.13 0.00 0.00 2.43
303 304 0.931005 CAGATCGCGGCTAGGTTTTC 59.069 55.000 6.13 0.00 0.00 2.29
305 306 2.029623 AGATCGCGGCTAGGTTTTCTA 58.970 47.619 6.13 0.00 0.00 2.10
306 307 2.034812 AGATCGCGGCTAGGTTTTCTAG 59.965 50.000 6.13 0.00 46.33 2.43
316 317 3.356529 AGGTTTTCTAGCCACATCCTG 57.643 47.619 0.00 0.00 0.00 3.86
317 318 1.745653 GGTTTTCTAGCCACATCCTGC 59.254 52.381 0.00 0.00 0.00 4.85
319 320 0.744414 TTTCTAGCCACATCCTGCGC 60.744 55.000 0.00 0.00 0.00 6.09
320 321 2.590007 CTAGCCACATCCTGCGCC 60.590 66.667 4.18 0.00 0.00 6.53
321 322 4.529219 TAGCCACATCCTGCGCCG 62.529 66.667 4.18 0.00 0.00 6.46
338 339 3.573491 GCCGCCGCACACCTTATC 61.573 66.667 0.00 0.00 34.03 1.75
340 341 3.925238 CGCCGCACACCTTATCGC 61.925 66.667 0.00 0.00 0.00 4.58
341 342 2.511600 GCCGCACACCTTATCGCT 60.512 61.111 0.00 0.00 0.00 4.93
342 343 2.813179 GCCGCACACCTTATCGCTG 61.813 63.158 0.00 0.00 0.00 5.18
344 345 2.813179 CGCACACCTTATCGCTGCC 61.813 63.158 0.00 0.00 0.00 4.85
347 348 1.078426 ACACCTTATCGCTGCCACC 60.078 57.895 0.00 0.00 0.00 4.61
348 349 1.819632 CACCTTATCGCTGCCACCC 60.820 63.158 0.00 0.00 0.00 4.61
349 350 2.203209 CCTTATCGCTGCCACCCC 60.203 66.667 0.00 0.00 0.00 4.95
350 351 2.746375 CCTTATCGCTGCCACCCCT 61.746 63.158 0.00 0.00 0.00 4.79
351 352 1.227674 CTTATCGCTGCCACCCCTC 60.228 63.158 0.00 0.00 0.00 4.30
378 379 4.452733 CCTCCCCGCCAACGTCTC 62.453 72.222 0.00 0.00 37.70 3.36
379 380 3.691342 CTCCCCGCCAACGTCTCA 61.691 66.667 0.00 0.00 37.70 3.27
381 382 3.047877 CCCCGCCAACGTCTCAAC 61.048 66.667 0.00 0.00 37.70 3.18
391 392 4.754667 GTCTCAACGCGGGTCCCC 62.755 72.222 12.47 0.00 0.00 4.81
393 394 4.452733 CTCAACGCGGGTCCCCTC 62.453 72.222 12.47 0.00 0.00 4.30
403 404 4.131088 GTCCCCTCGCCGTCTCAC 62.131 72.222 0.00 0.00 0.00 3.51
408 409 2.050350 CCTCGCCGTCTCACCCTAA 61.050 63.158 0.00 0.00 0.00 2.69
409 410 1.139095 CTCGCCGTCTCACCCTAAC 59.861 63.158 0.00 0.00 0.00 2.34
410 411 1.303888 TCGCCGTCTCACCCTAACT 60.304 57.895 0.00 0.00 0.00 2.24
411 412 1.139095 CGCCGTCTCACCCTAACTC 59.861 63.158 0.00 0.00 0.00 3.01
412 413 1.516423 GCCGTCTCACCCTAACTCC 59.484 63.158 0.00 0.00 0.00 3.85
414 415 0.818296 CCGTCTCACCCTAACTCCAG 59.182 60.000 0.00 0.00 0.00 3.86
416 417 1.473278 CGTCTCACCCTAACTCCAGTC 59.527 57.143 0.00 0.00 0.00 3.51
417 418 2.526432 GTCTCACCCTAACTCCAGTCA 58.474 52.381 0.00 0.00 0.00 3.41
419 420 1.550976 CTCACCCTAACTCCAGTCACC 59.449 57.143 0.00 0.00 0.00 4.02
420 421 1.149288 TCACCCTAACTCCAGTCACCT 59.851 52.381 0.00 0.00 0.00 4.00
421 422 1.276421 CACCCTAACTCCAGTCACCTG 59.724 57.143 0.00 0.00 38.50 4.00
422 423 0.250513 CCCTAACTCCAGTCACCTGC 59.749 60.000 0.00 0.00 37.38 4.85
423 424 0.250513 CCTAACTCCAGTCACCTGCC 59.749 60.000 0.00 0.00 37.38 4.85
424 425 1.270907 CTAACTCCAGTCACCTGCCT 58.729 55.000 0.00 0.00 37.38 4.75
425 426 1.205893 CTAACTCCAGTCACCTGCCTC 59.794 57.143 0.00 0.00 37.38 4.70
427 428 1.611851 CTCCAGTCACCTGCCTCCT 60.612 63.158 0.00 0.00 37.38 3.69
428 429 1.610673 TCCAGTCACCTGCCTCCTC 60.611 63.158 0.00 0.00 37.38 3.71
430 431 3.386237 AGTCACCTGCCTCCTCGC 61.386 66.667 0.00 0.00 0.00 5.03
431 432 4.459089 GTCACCTGCCTCCTCGCC 62.459 72.222 0.00 0.00 0.00 5.54
436 437 4.785453 CTGCCTCCTCGCCCCAAC 62.785 72.222 0.00 0.00 0.00 3.77
438 439 4.475135 GCCTCCTCGCCCCAACTC 62.475 72.222 0.00 0.00 0.00 3.01
439 440 3.787001 CCTCCTCGCCCCAACTCC 61.787 72.222 0.00 0.00 0.00 3.85
440 441 4.148825 CTCCTCGCCCCAACTCCG 62.149 72.222 0.00 0.00 0.00 4.63
450 451 4.101448 CAACTCCGGCCTCCCCAG 62.101 72.222 0.00 0.00 0.00 4.45
458 459 4.120755 GCCTCCCCAGCCTCAAGG 62.121 72.222 0.00 0.00 38.53 3.61
460 461 2.373707 CCTCCCCAGCCTCAAGGAG 61.374 68.421 0.00 0.00 44.65 3.69
462 463 3.333219 CCCCAGCCTCAAGGAGCA 61.333 66.667 0.00 0.00 37.39 4.26
463 464 2.271497 CCCAGCCTCAAGGAGCAG 59.729 66.667 0.00 0.00 37.39 4.24
464 465 2.271497 CCAGCCTCAAGGAGCAGG 59.729 66.667 0.00 0.00 37.39 4.85
466 467 1.078567 CAGCCTCAAGGAGCAGGAC 60.079 63.158 0.00 0.00 37.39 3.85
467 468 2.125350 GCCTCAAGGAGCAGGACG 60.125 66.667 0.00 0.00 37.39 4.79
468 469 2.125350 CCTCAAGGAGCAGGACGC 60.125 66.667 0.00 0.00 42.91 5.19
469 470 2.125350 CTCAAGGAGCAGGACGCC 60.125 66.667 0.00 0.00 44.04 5.68
474 475 4.459089 GGAGCAGGACGCCTCACC 62.459 72.222 0.00 0.00 44.04 4.02
476 477 3.240134 GAGCAGGACGCCTCACCAA 62.240 63.158 0.00 0.00 44.04 3.67
478 479 2.358737 CAGGACGCCTCACCAACC 60.359 66.667 0.00 0.00 0.00 3.77
479 480 3.637273 AGGACGCCTCACCAACCC 61.637 66.667 0.00 0.00 0.00 4.11
480 481 4.717313 GGACGCCTCACCAACCCC 62.717 72.222 0.00 0.00 0.00 4.95
484 485 4.410400 GCCTCACCAACCCCGGAG 62.410 72.222 0.73 0.00 0.00 4.63
485 486 4.410400 CCTCACCAACCCCGGAGC 62.410 72.222 0.73 0.00 0.00 4.70
486 487 3.636231 CTCACCAACCCCGGAGCA 61.636 66.667 0.73 0.00 0.00 4.26
487 488 3.901797 CTCACCAACCCCGGAGCAC 62.902 68.421 0.73 0.00 0.00 4.40
509 510 2.522193 GCCTCCCTACCTCCCGAG 60.522 72.222 0.00 0.00 0.00 4.63
518 519 4.547859 CCTCCCGAGGCATTTCAG 57.452 61.111 0.00 0.00 42.44 3.02
519 520 1.821332 CCTCCCGAGGCATTTCAGC 60.821 63.158 0.00 0.00 42.44 4.26
531 532 3.505836 GCATTTCAGCCTTTTCACTAGC 58.494 45.455 0.00 0.00 0.00 3.42
532 533 3.192212 GCATTTCAGCCTTTTCACTAGCT 59.808 43.478 0.00 0.00 35.52 3.32
533 534 4.673841 GCATTTCAGCCTTTTCACTAGCTC 60.674 45.833 0.00 0.00 31.93 4.09
534 535 3.769739 TTCAGCCTTTTCACTAGCTCA 57.230 42.857 0.00 0.00 31.93 4.26
537 538 4.005650 TCAGCCTTTTCACTAGCTCAATG 58.994 43.478 0.00 0.00 31.93 2.82
540 541 4.217118 AGCCTTTTCACTAGCTCAATGTTG 59.783 41.667 0.00 0.00 0.00 3.33
541 542 4.479619 CCTTTTCACTAGCTCAATGTTGC 58.520 43.478 0.00 0.00 0.00 4.17
542 543 4.479619 CTTTTCACTAGCTCAATGTTGCC 58.520 43.478 0.00 0.00 0.00 4.52
548 549 4.455533 CACTAGCTCAATGTTGCCAAACTA 59.544 41.667 0.00 0.00 37.19 2.24
549 550 3.923017 AGCTCAATGTTGCCAAACTAC 57.077 42.857 0.00 0.00 37.19 2.73
550 551 3.490348 AGCTCAATGTTGCCAAACTACT 58.510 40.909 0.00 0.00 37.19 2.57
551 552 4.651778 AGCTCAATGTTGCCAAACTACTA 58.348 39.130 0.00 0.00 37.19 1.82
553 554 5.048713 AGCTCAATGTTGCCAAACTACTAAC 60.049 40.000 0.00 0.00 37.19 2.34
555 556 5.381757 TCAATGTTGCCAAACTACTAACCT 58.618 37.500 0.00 0.00 37.19 3.50
557 558 5.959618 ATGTTGCCAAACTACTAACCTTC 57.040 39.130 0.00 0.00 37.19 3.46
558 559 4.783055 TGTTGCCAAACTACTAACCTTCA 58.217 39.130 0.00 0.00 37.19 3.02
559 560 4.577283 TGTTGCCAAACTACTAACCTTCAC 59.423 41.667 0.00 0.00 37.19 3.18
561 562 4.385825 TGCCAAACTACTAACCTTCACTG 58.614 43.478 0.00 0.00 0.00 3.66
562 563 3.188667 GCCAAACTACTAACCTTCACTGC 59.811 47.826 0.00 0.00 0.00 4.40
564 565 4.452455 CCAAACTACTAACCTTCACTGCAG 59.548 45.833 13.48 13.48 0.00 4.41
565 566 3.320673 ACTACTAACCTTCACTGCAGC 57.679 47.619 15.27 0.00 0.00 5.25
567 568 2.175878 ACTAACCTTCACTGCAGCTG 57.824 50.000 15.27 10.11 0.00 4.24
568 569 1.694150 ACTAACCTTCACTGCAGCTGA 59.306 47.619 20.43 13.85 0.00 4.26
570 571 2.283145 AACCTTCACTGCAGCTGATT 57.717 45.000 20.43 5.83 0.00 2.57
571 572 1.818642 ACCTTCACTGCAGCTGATTC 58.181 50.000 20.43 0.00 0.00 2.52
572 573 0.725686 CCTTCACTGCAGCTGATTCG 59.274 55.000 20.43 4.11 0.00 3.34
573 574 1.436600 CTTCACTGCAGCTGATTCGT 58.563 50.000 20.43 4.80 0.00 3.85
574 575 1.392853 CTTCACTGCAGCTGATTCGTC 59.607 52.381 20.43 0.00 0.00 4.20
575 576 0.318120 TCACTGCAGCTGATTCGTCA 59.682 50.000 20.43 3.32 0.00 4.35
576 577 0.720027 CACTGCAGCTGATTCGTCAG 59.280 55.000 20.43 16.04 40.51 3.51
589 590 1.070821 TCGTCAGCGAATCAGCTTTG 58.929 50.000 0.00 0.00 46.80 2.77
590 591 0.519999 CGTCAGCGAATCAGCTTTGC 60.520 55.000 0.00 0.00 46.80 3.68
591 592 0.179179 GTCAGCGAATCAGCTTTGCC 60.179 55.000 0.00 0.00 46.80 4.52
592 593 0.606130 TCAGCGAATCAGCTTTGCCA 60.606 50.000 0.00 0.00 46.80 4.92
593 594 0.455633 CAGCGAATCAGCTTTGCCAC 60.456 55.000 0.00 0.00 46.80 5.01
594 595 1.153958 GCGAATCAGCTTTGCCACC 60.154 57.895 0.00 0.00 38.18 4.61
595 596 1.865788 GCGAATCAGCTTTGCCACCA 61.866 55.000 0.00 0.00 38.18 4.17
596 597 0.109597 CGAATCAGCTTTGCCACCAC 60.110 55.000 0.00 0.00 0.00 4.16
597 598 0.961019 GAATCAGCTTTGCCACCACA 59.039 50.000 0.00 0.00 0.00 4.17
598 599 0.963962 AATCAGCTTTGCCACCACAG 59.036 50.000 0.00 0.00 0.00 3.66
600 601 1.102809 TCAGCTTTGCCACCACAGTG 61.103 55.000 0.00 0.00 44.12 3.66
610 611 3.329300 ACCACAGTGAATCCACAGC 57.671 52.632 0.62 0.00 45.54 4.40
611 612 0.767375 ACCACAGTGAATCCACAGCT 59.233 50.000 0.62 0.00 45.54 4.24
612 613 1.162698 CCACAGTGAATCCACAGCTG 58.837 55.000 13.48 13.48 45.54 4.24
614 615 2.617276 CCACAGTGAATCCACAGCTGAT 60.617 50.000 23.35 0.00 45.54 2.90
616 617 3.126514 CACAGTGAATCCACAGCTGATTC 59.873 47.826 23.35 18.83 45.54 2.52
618 619 3.374367 CAGTGAATCCACAGCTGATTCTG 59.626 47.826 23.35 8.00 45.34 3.02
621 622 3.754850 TGAATCCACAGCTGATTCTGTTG 59.245 43.478 23.35 5.94 44.26 3.33
622 623 3.708403 ATCCACAGCTGATTCTGTTGA 57.292 42.857 23.35 2.15 44.26 3.18
623 624 3.490439 TCCACAGCTGATTCTGTTGAA 57.510 42.857 23.35 0.00 44.26 2.69
624 625 3.405831 TCCACAGCTGATTCTGTTGAAG 58.594 45.455 23.35 6.17 44.26 3.02
626 627 2.095364 CACAGCTGATTCTGTTGAAGCC 60.095 50.000 23.35 0.00 44.26 4.35
627 628 1.129998 CAGCTGATTCTGTTGAAGCCG 59.870 52.381 8.42 0.00 37.76 5.52
630 631 2.159599 GCTGATTCTGTTGAAGCCGAAG 60.160 50.000 0.00 0.00 37.76 3.79
631 632 1.806542 TGATTCTGTTGAAGCCGAAGC 59.193 47.619 0.00 0.00 37.76 3.86
632 633 1.131315 GATTCTGTTGAAGCCGAAGCC 59.869 52.381 0.00 0.00 41.25 4.35
633 634 0.889186 TTCTGTTGAAGCCGAAGCCC 60.889 55.000 0.00 0.00 41.25 5.19
634 635 1.600636 CTGTTGAAGCCGAAGCCCA 60.601 57.895 0.00 0.00 41.25 5.36
635 636 1.152860 TGTTGAAGCCGAAGCCCAA 60.153 52.632 0.00 0.00 41.25 4.12
637 638 0.318699 GTTGAAGCCGAAGCCCAAAC 60.319 55.000 0.00 0.00 41.25 2.93
638 639 0.753479 TTGAAGCCGAAGCCCAAACA 60.753 50.000 0.00 0.00 41.25 2.83
641 642 0.827368 AAGCCGAAGCCCAAACAAAA 59.173 45.000 0.00 0.00 41.25 2.44
642 643 0.104120 AGCCGAAGCCCAAACAAAAC 59.896 50.000 0.00 0.00 41.25 2.43
643 644 0.878523 GCCGAAGCCCAAACAAAACC 60.879 55.000 0.00 0.00 0.00 3.27
647 648 3.377439 CGAAGCCCAAACAAAACCTAAC 58.623 45.455 0.00 0.00 0.00 2.34
648 649 3.067601 CGAAGCCCAAACAAAACCTAACT 59.932 43.478 0.00 0.00 0.00 2.24
650 651 2.963101 AGCCCAAACAAAACCTAACTCC 59.037 45.455 0.00 0.00 0.00 3.85
652 653 4.141111 AGCCCAAACAAAACCTAACTCCTA 60.141 41.667 0.00 0.00 0.00 2.94
653 654 4.022589 GCCCAAACAAAACCTAACTCCTAC 60.023 45.833 0.00 0.00 0.00 3.18
655 656 5.472478 CCCAAACAAAACCTAACTCCTACTC 59.528 44.000 0.00 0.00 0.00 2.59
658 659 7.447594 CAAACAAAACCTAACTCCTACTCCTA 58.552 38.462 0.00 0.00 0.00 2.94
660 661 5.720520 ACAAAACCTAACTCCTACTCCTAGG 59.279 44.000 0.82 0.82 41.19 3.02
667 668 2.002505 TCCTACTCCTAGGAGCATGC 57.997 55.000 34.48 10.51 43.35 4.06
668 669 1.501170 TCCTACTCCTAGGAGCATGCT 59.499 52.381 34.48 22.92 43.35 3.79
669 670 2.091055 TCCTACTCCTAGGAGCATGCTT 60.091 50.000 34.48 18.75 43.35 3.91
670 671 2.036992 CCTACTCCTAGGAGCATGCTTG 59.963 54.545 34.48 17.33 45.54 4.01
671 672 1.577736 ACTCCTAGGAGCATGCTTGT 58.422 50.000 34.48 14.58 45.54 3.16
672 673 2.752030 ACTCCTAGGAGCATGCTTGTA 58.248 47.619 34.48 14.94 45.54 2.41
673 674 2.697751 ACTCCTAGGAGCATGCTTGTAG 59.302 50.000 34.48 22.57 45.54 2.74
674 675 1.414181 TCCTAGGAGCATGCTTGTAGC 59.586 52.381 23.61 8.33 38.32 3.58
678 679 3.352447 GAGCATGCTTGTAGCTCGA 57.648 52.632 23.61 0.00 44.37 4.04
680 681 1.791785 GAGCATGCTTGTAGCTCGATC 59.208 52.381 23.61 0.00 44.37 3.69
681 682 1.411977 AGCATGCTTGTAGCTCGATCT 59.588 47.619 16.30 0.00 42.97 2.75
682 683 2.158986 AGCATGCTTGTAGCTCGATCTT 60.159 45.455 16.30 0.00 42.97 2.40
683 684 2.611292 GCATGCTTGTAGCTCGATCTTT 59.389 45.455 11.37 0.00 42.97 2.52
684 685 3.064545 GCATGCTTGTAGCTCGATCTTTT 59.935 43.478 11.37 0.00 42.97 2.27
712 713 8.868522 TTCTCTCACTAATCAATGAATTTGGT 57.131 30.769 0.00 0.00 35.92 3.67
714 715 9.605275 TCTCTCACTAATCAATGAATTTGGTAG 57.395 33.333 0.00 0.00 35.92 3.18
716 717 9.383519 TCTCACTAATCAATGAATTTGGTAGAC 57.616 33.333 0.00 0.00 35.92 2.59
717 718 8.196802 TCACTAATCAATGAATTTGGTAGACG 57.803 34.615 0.00 0.00 35.92 4.18
720 721 8.450964 ACTAATCAATGAATTTGGTAGACGTTG 58.549 33.333 0.00 0.00 35.92 4.10
721 722 5.041951 TCAATGAATTTGGTAGACGTTGC 57.958 39.130 0.00 0.00 35.92 4.17
889 2326 2.682494 TAACGGGGAGCGGCTTCT 60.682 61.111 8.44 0.00 0.00 2.85
938 2375 0.768622 TCCCCACATCGTTTCTTGGT 59.231 50.000 0.00 0.00 0.00 3.67
1188 2634 3.319198 GTCCGCCACCTCTCCCAA 61.319 66.667 0.00 0.00 0.00 4.12
1191 2637 2.669133 CCGCCACCTCTCCCAATCA 61.669 63.158 0.00 0.00 0.00 2.57
1899 3345 2.415010 CTCATGGAGAGGCGGTCG 59.585 66.667 0.00 0.00 40.84 4.79
1985 3431 2.492088 TGTACTCATCTGTTGACGAGGG 59.508 50.000 0.00 0.00 36.89 4.30
2405 3857 3.633094 CTCCTGCTGCGCGTACTGT 62.633 63.158 8.43 0.00 0.00 3.55
2493 3945 0.695347 AGAAGCTGGGTGGAAAGAGG 59.305 55.000 0.00 0.00 0.00 3.69
2867 4343 3.214328 CATATTGTGGTAGGGAAGTGCC 58.786 50.000 0.00 0.00 0.00 5.01
3061 4826 8.902540 TGTGAATGACATACTCTGTTAAACTT 57.097 30.769 0.00 0.00 38.54 2.66
3106 4924 3.273434 TGCTCTGAAATATGTGTGCTCC 58.727 45.455 0.00 0.00 0.00 4.70
3121 4939 0.179062 GCTCCGATGGAATGTGCTCT 60.179 55.000 0.00 0.00 0.00 4.09
3302 5498 1.927527 ACAGATCTGCCCCAAGCCT 60.928 57.895 22.83 0.00 42.71 4.58
3353 5551 3.628032 TGATTGGTTTTGTAGCGTTCACA 59.372 39.130 0.00 0.00 0.00 3.58
3534 5732 0.108804 TCTCGGGAGAAACATGTCGC 60.109 55.000 0.00 0.00 39.18 5.19
3594 5792 6.549736 ACTGACAAGGCTTATTTTACCAAACT 59.450 34.615 0.00 0.00 0.00 2.66
3649 5847 5.946942 TCAGGATGAATGACTTAGCTTCT 57.053 39.130 0.00 0.00 45.97 2.85
3650 5848 5.911752 TCAGGATGAATGACTTAGCTTCTC 58.088 41.667 0.00 0.00 45.97 2.87
3652 5850 4.968080 AGGATGAATGACTTAGCTTCTCCT 59.032 41.667 0.00 0.00 0.00 3.69
3653 5851 5.070313 AGGATGAATGACTTAGCTTCTCCTC 59.930 44.000 0.00 0.00 28.82 3.71
3654 5852 4.744795 TGAATGACTTAGCTTCTCCTCC 57.255 45.455 0.00 0.00 0.00 4.30
3655 5853 4.096681 TGAATGACTTAGCTTCTCCTCCA 58.903 43.478 0.00 0.00 0.00 3.86
3656 5854 4.718774 TGAATGACTTAGCTTCTCCTCCAT 59.281 41.667 0.00 0.00 0.00 3.41
3657 5855 4.953940 ATGACTTAGCTTCTCCTCCATC 57.046 45.455 0.00 0.00 0.00 3.51
3658 5856 3.713003 TGACTTAGCTTCTCCTCCATCA 58.287 45.455 0.00 0.00 0.00 3.07
3659 5857 4.293494 TGACTTAGCTTCTCCTCCATCAT 58.707 43.478 0.00 0.00 0.00 2.45
3660 5858 4.100653 TGACTTAGCTTCTCCTCCATCATG 59.899 45.833 0.00 0.00 0.00 3.07
3661 5859 4.036518 ACTTAGCTTCTCCTCCATCATGT 58.963 43.478 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.609533 AGTATGACTAGTTAATTGCCCGT 57.390 39.130 0.00 0.00 0.00 5.28
1 2 8.428186 TTTTAGTATGACTAGTTAATTGCCCG 57.572 34.615 0.00 0.00 31.47 6.13
14 15 9.670442 TGGAGGGAGTATATTTTTAGTATGACT 57.330 33.333 0.00 0.00 0.00 3.41
17 18 9.672673 CCATGGAGGGAGTATATTTTTAGTATG 57.327 37.037 5.56 0.00 0.00 2.39
18 19 8.329502 GCCATGGAGGGAGTATATTTTTAGTAT 58.670 37.037 18.40 0.00 38.09 2.12
20 21 6.543735 GCCATGGAGGGAGTATATTTTTAGT 58.456 40.000 18.40 0.00 38.09 2.24
21 22 5.643777 CGCCATGGAGGGAGTATATTTTTAG 59.356 44.000 18.40 0.00 38.09 1.85
24 25 3.244911 CCGCCATGGAGGGAGTATATTTT 60.245 47.826 25.97 0.00 42.00 1.82
25 26 2.305927 CCGCCATGGAGGGAGTATATTT 59.694 50.000 25.97 0.00 42.00 1.40
26 27 1.909302 CCGCCATGGAGGGAGTATATT 59.091 52.381 25.97 0.00 42.00 1.28
27 28 1.573108 CCGCCATGGAGGGAGTATAT 58.427 55.000 25.97 0.00 42.00 0.86
29 30 3.891817 CCGCCATGGAGGGAGTAT 58.108 61.111 25.97 0.00 42.00 2.12
48 49 0.745486 TCACTCAATCGCCATGCTGG 60.745 55.000 0.00 0.00 41.55 4.85
49 50 0.656259 CTCACTCAATCGCCATGCTG 59.344 55.000 0.00 0.00 0.00 4.41
50 51 0.463295 CCTCACTCAATCGCCATGCT 60.463 55.000 0.00 0.00 0.00 3.79
51 52 2.020131 CCTCACTCAATCGCCATGC 58.980 57.895 0.00 0.00 0.00 4.06
52 53 1.769098 CGCCTCACTCAATCGCCATG 61.769 60.000 0.00 0.00 0.00 3.66
53 54 1.522355 CGCCTCACTCAATCGCCAT 60.522 57.895 0.00 0.00 0.00 4.40
55 56 1.880340 CTCGCCTCACTCAATCGCC 60.880 63.158 0.00 0.00 0.00 5.54
56 57 0.869454 CTCTCGCCTCACTCAATCGC 60.869 60.000 0.00 0.00 0.00 4.58
57 58 0.869454 GCTCTCGCCTCACTCAATCG 60.869 60.000 0.00 0.00 0.00 3.34
58 59 0.869454 CGCTCTCGCCTCACTCAATC 60.869 60.000 0.00 0.00 0.00 2.67
59 60 1.140589 CGCTCTCGCCTCACTCAAT 59.859 57.895 0.00 0.00 0.00 2.57
61 62 1.750780 ATCGCTCTCGCCTCACTCA 60.751 57.895 0.00 0.00 35.26 3.41
62 63 1.299014 CATCGCTCTCGCCTCACTC 60.299 63.158 0.00 0.00 35.26 3.51
64 65 2.279120 CCATCGCTCTCGCCTCAC 60.279 66.667 0.00 0.00 35.26 3.51
66 67 1.735376 TTACCCATCGCTCTCGCCTC 61.735 60.000 0.00 0.00 35.26 4.70
67 68 1.739338 CTTACCCATCGCTCTCGCCT 61.739 60.000 0.00 0.00 35.26 5.52
69 70 1.951631 GCTTACCCATCGCTCTCGC 60.952 63.158 0.00 0.00 35.26 5.03
70 71 1.658717 CGCTTACCCATCGCTCTCG 60.659 63.158 0.00 0.00 0.00 4.04
71 72 0.595310 GACGCTTACCCATCGCTCTC 60.595 60.000 0.00 0.00 0.00 3.20
72 73 1.437986 GACGCTTACCCATCGCTCT 59.562 57.895 0.00 0.00 0.00 4.09
73 74 1.944676 CGACGCTTACCCATCGCTC 60.945 63.158 0.00 0.00 0.00 5.03
74 75 2.104331 CGACGCTTACCCATCGCT 59.896 61.111 0.00 0.00 0.00 4.93
75 76 2.960129 CCGACGCTTACCCATCGC 60.960 66.667 0.00 0.00 33.25 4.58
76 77 1.588139 GTCCGACGCTTACCCATCG 60.588 63.158 0.00 0.00 0.00 3.84
80 81 1.139095 CTCAGTCCGACGCTTACCC 59.861 63.158 0.00 0.00 0.00 3.69
81 82 1.516603 GCTCAGTCCGACGCTTACC 60.517 63.158 0.00 0.00 0.00 2.85
82 83 1.516603 GGCTCAGTCCGACGCTTAC 60.517 63.158 0.00 0.00 0.00 2.34
83 84 2.882876 GGCTCAGTCCGACGCTTA 59.117 61.111 0.00 0.00 0.00 3.09
100 101 1.144057 AGAAGTAAGCGGCCCATCG 59.856 57.895 0.00 0.00 0.00 3.84
101 102 0.107654 ACAGAAGTAAGCGGCCCATC 60.108 55.000 0.00 0.00 0.00 3.51
102 103 0.328258 AACAGAAGTAAGCGGCCCAT 59.672 50.000 0.00 0.00 0.00 4.00
104 105 0.803117 GAAACAGAAGTAAGCGGCCC 59.197 55.000 0.00 0.00 0.00 5.80
105 106 0.803117 GGAAACAGAAGTAAGCGGCC 59.197 55.000 0.00 0.00 0.00 6.13
106 107 1.197036 GTGGAAACAGAAGTAAGCGGC 59.803 52.381 0.00 0.00 44.46 6.53
107 108 1.804748 GGTGGAAACAGAAGTAAGCGG 59.195 52.381 0.00 0.00 44.46 5.52
108 109 1.804748 GGGTGGAAACAGAAGTAAGCG 59.195 52.381 0.00 0.00 44.46 4.68
109 110 1.804748 CGGGTGGAAACAGAAGTAAGC 59.195 52.381 0.00 0.00 44.46 3.09
110 111 3.326747 CTCGGGTGGAAACAGAAGTAAG 58.673 50.000 0.00 0.00 44.46 2.34
111 112 2.549349 GCTCGGGTGGAAACAGAAGTAA 60.549 50.000 0.00 0.00 44.46 2.24
112 113 1.001633 GCTCGGGTGGAAACAGAAGTA 59.998 52.381 0.00 0.00 44.46 2.24
113 114 0.250338 GCTCGGGTGGAAACAGAAGT 60.250 55.000 0.00 0.00 44.46 3.01
114 115 1.291877 CGCTCGGGTGGAAACAGAAG 61.292 60.000 0.00 0.00 44.46 2.85
115 116 1.301401 CGCTCGGGTGGAAACAGAA 60.301 57.895 0.00 0.00 44.46 3.02
118 119 0.464013 TTTTCGCTCGGGTGGAAACA 60.464 50.000 0.00 0.00 38.70 2.83
119 120 0.237498 CTTTTCGCTCGGGTGGAAAC 59.763 55.000 0.00 0.00 0.00 2.78
121 122 1.964373 GCTTTTCGCTCGGGTGGAA 60.964 57.895 0.00 0.00 35.14 3.53
122 123 2.358247 GCTTTTCGCTCGGGTGGA 60.358 61.111 0.00 0.00 35.14 4.02
139 140 2.188837 TGAACTACAGTATGCGCGAG 57.811 50.000 12.10 0.00 42.53 5.03
140 141 2.459934 CATGAACTACAGTATGCGCGA 58.540 47.619 12.10 0.00 42.53 5.87
141 142 1.071239 GCATGAACTACAGTATGCGCG 60.071 52.381 0.00 0.00 42.53 6.86
142 143 2.652662 GCATGAACTACAGTATGCGC 57.347 50.000 0.00 0.00 42.53 6.09
145 146 5.565638 CGATACTCGCATGAACTACAGTATG 59.434 44.000 0.00 0.00 35.67 2.39
146 147 5.238868 ACGATACTCGCATGAACTACAGTAT 59.761 40.000 0.00 0.00 45.12 2.12
147 148 4.573607 ACGATACTCGCATGAACTACAGTA 59.426 41.667 0.00 0.00 45.12 2.74
148 149 3.377485 ACGATACTCGCATGAACTACAGT 59.623 43.478 0.00 0.00 45.12 3.55
149 150 3.953766 ACGATACTCGCATGAACTACAG 58.046 45.455 0.00 0.00 45.12 2.74
152 153 3.379057 TCCAACGATACTCGCATGAACTA 59.621 43.478 0.00 0.00 45.12 2.24
153 154 2.165641 TCCAACGATACTCGCATGAACT 59.834 45.455 0.00 0.00 45.12 3.01
154 155 2.281762 GTCCAACGATACTCGCATGAAC 59.718 50.000 0.00 0.00 45.12 3.18
155 156 2.536365 GTCCAACGATACTCGCATGAA 58.464 47.619 0.00 0.00 45.12 2.57
157 158 0.846401 CGTCCAACGATACTCGCATG 59.154 55.000 0.00 0.00 46.05 4.06
158 159 0.248907 CCGTCCAACGATACTCGCAT 60.249 55.000 0.24 0.00 46.05 4.73
159 160 1.138036 CCGTCCAACGATACTCGCA 59.862 57.895 0.24 0.00 46.05 5.10
164 165 1.567504 CATCACCCGTCCAACGATAC 58.432 55.000 0.24 0.00 46.05 2.24
165 166 0.462375 CCATCACCCGTCCAACGATA 59.538 55.000 0.24 0.00 46.05 2.92
166 167 1.220749 CCATCACCCGTCCAACGAT 59.779 57.895 0.24 0.00 46.05 3.73
167 168 1.909287 TCCATCACCCGTCCAACGA 60.909 57.895 0.24 0.00 46.05 3.85
168 169 1.740296 GTCCATCACCCGTCCAACG 60.740 63.158 0.00 0.00 42.11 4.10
169 170 1.740296 CGTCCATCACCCGTCCAAC 60.740 63.158 0.00 0.00 0.00 3.77
171 172 3.387091 CCGTCCATCACCCGTCCA 61.387 66.667 0.00 0.00 0.00 4.02
172 173 3.387947 ACCGTCCATCACCCGTCC 61.388 66.667 0.00 0.00 0.00 4.79
173 174 2.125673 CACCGTCCATCACCCGTC 60.126 66.667 0.00 0.00 0.00 4.79
174 175 4.388499 GCACCGTCCATCACCCGT 62.388 66.667 0.00 0.00 0.00 5.28
177 178 3.127533 GCTGCACCGTCCATCACC 61.128 66.667 0.00 0.00 0.00 4.02
178 179 3.490759 CGCTGCACCGTCCATCAC 61.491 66.667 0.00 0.00 0.00 3.06
197 198 3.966026 CTGCCGAGGGACGTCGTTC 62.966 68.421 9.92 8.57 38.32 3.95
200 201 3.109612 CTACTGCCGAGGGACGTCG 62.110 68.421 9.92 7.38 40.78 5.12
201 202 1.310933 TTCTACTGCCGAGGGACGTC 61.311 60.000 7.13 7.13 40.78 4.34
202 203 1.303888 TTCTACTGCCGAGGGACGT 60.304 57.895 0.00 0.00 40.78 4.34
204 205 0.896226 AAGTTCTACTGCCGAGGGAC 59.104 55.000 0.00 0.00 0.00 4.46
205 206 1.549170 GAAAGTTCTACTGCCGAGGGA 59.451 52.381 0.00 0.00 0.00 4.20
208 209 3.860536 GCTTAGAAAGTTCTACTGCCGAG 59.139 47.826 0.14 0.00 39.36 4.63
212 213 4.822026 TCTGGCTTAGAAAGTTCTACTGC 58.178 43.478 12.97 12.97 39.36 4.40
215 216 5.662674 TCCTCTGGCTTAGAAAGTTCTAC 57.337 43.478 0.14 0.00 39.36 2.59
217 218 5.029474 AGATCCTCTGGCTTAGAAAGTTCT 58.971 41.667 0.00 0.00 41.24 3.01
218 219 5.351948 AGATCCTCTGGCTTAGAAAGTTC 57.648 43.478 0.00 0.00 34.32 3.01
219 220 4.142049 CGAGATCCTCTGGCTTAGAAAGTT 60.142 45.833 0.00 0.00 34.32 2.66
220 221 3.383185 CGAGATCCTCTGGCTTAGAAAGT 59.617 47.826 0.00 0.00 34.32 2.66
221 222 3.383185 ACGAGATCCTCTGGCTTAGAAAG 59.617 47.826 0.00 0.00 34.32 2.62
222 223 3.366396 ACGAGATCCTCTGGCTTAGAAA 58.634 45.455 0.00 0.00 34.32 2.52
223 224 3.019799 ACGAGATCCTCTGGCTTAGAA 57.980 47.619 0.00 0.00 34.32 2.10
225 226 2.035321 GGAACGAGATCCTCTGGCTTAG 59.965 54.545 0.00 0.00 36.50 2.18
228 229 2.510664 GGAACGAGATCCTCTGGCT 58.489 57.895 0.00 0.00 36.50 4.75
245 246 1.935327 GAGACGGGTCAGGTCTTCGG 61.935 65.000 1.17 0.00 44.41 4.30
246 247 1.507174 GAGACGGGTCAGGTCTTCG 59.493 63.158 1.17 0.00 44.41 3.79
247 248 1.242665 ACGAGACGGGTCAGGTCTTC 61.243 60.000 1.17 0.00 44.41 2.87
249 250 1.228490 AACGAGACGGGTCAGGTCT 60.228 57.895 1.17 0.00 46.91 3.85
250 251 1.212229 GAACGAGACGGGTCAGGTC 59.788 63.158 1.17 0.00 34.62 3.85
251 252 1.111116 TTGAACGAGACGGGTCAGGT 61.111 55.000 1.17 0.00 0.00 4.00
252 253 0.246635 ATTGAACGAGACGGGTCAGG 59.753 55.000 1.17 0.00 0.00 3.86
253 254 1.630148 GATTGAACGAGACGGGTCAG 58.370 55.000 1.17 0.00 0.00 3.51
255 256 0.459759 GGGATTGAACGAGACGGGTC 60.460 60.000 0.00 0.00 0.00 4.46
257 258 1.153429 GGGGATTGAACGAGACGGG 60.153 63.158 0.00 0.00 0.00 5.28
258 259 0.179108 GAGGGGATTGAACGAGACGG 60.179 60.000 0.00 0.00 0.00 4.79
259 260 0.179108 GGAGGGGATTGAACGAGACG 60.179 60.000 0.00 0.00 0.00 4.18
260 261 1.134670 CAGGAGGGGATTGAACGAGAC 60.135 57.143 0.00 0.00 0.00 3.36
261 262 1.195115 CAGGAGGGGATTGAACGAGA 58.805 55.000 0.00 0.00 0.00 4.04
262 263 1.195115 TCAGGAGGGGATTGAACGAG 58.805 55.000 0.00 0.00 0.00 4.18
264 265 2.084546 GTTTCAGGAGGGGATTGAACG 58.915 52.381 0.00 0.00 31.11 3.95
265 266 3.084786 CTGTTTCAGGAGGGGATTGAAC 58.915 50.000 0.00 0.00 31.11 3.18
266 267 2.986019 TCTGTTTCAGGAGGGGATTGAA 59.014 45.455 0.00 0.00 31.51 2.69
267 268 2.631384 TCTGTTTCAGGAGGGGATTGA 58.369 47.619 0.00 0.00 31.51 2.57
268 269 3.549794 GATCTGTTTCAGGAGGGGATTG 58.450 50.000 0.00 0.00 31.51 2.67
269 270 2.171448 CGATCTGTTTCAGGAGGGGATT 59.829 50.000 0.00 0.00 31.51 3.01
270 271 1.765314 CGATCTGTTTCAGGAGGGGAT 59.235 52.381 0.00 0.00 31.51 3.85
271 272 1.195115 CGATCTGTTTCAGGAGGGGA 58.805 55.000 0.00 0.00 31.51 4.81
272 273 0.462759 GCGATCTGTTTCAGGAGGGG 60.463 60.000 0.00 0.00 31.51 4.79
273 274 0.807667 CGCGATCTGTTTCAGGAGGG 60.808 60.000 0.00 0.00 31.51 4.30
274 275 0.807667 CCGCGATCTGTTTCAGGAGG 60.808 60.000 8.23 0.00 31.51 4.30
275 276 1.424493 GCCGCGATCTGTTTCAGGAG 61.424 60.000 8.23 0.00 31.51 3.69
276 277 1.447838 GCCGCGATCTGTTTCAGGA 60.448 57.895 8.23 0.00 31.51 3.86
278 279 1.203928 CTAGCCGCGATCTGTTTCAG 58.796 55.000 8.23 0.00 0.00 3.02
279 280 0.179111 CCTAGCCGCGATCTGTTTCA 60.179 55.000 8.23 0.00 0.00 2.69
280 281 0.179108 ACCTAGCCGCGATCTGTTTC 60.179 55.000 8.23 0.00 0.00 2.78
281 282 0.249398 AACCTAGCCGCGATCTGTTT 59.751 50.000 8.23 0.00 0.00 2.83
282 283 0.249398 AAACCTAGCCGCGATCTGTT 59.751 50.000 8.23 3.05 0.00 3.16
283 284 0.249398 AAAACCTAGCCGCGATCTGT 59.751 50.000 8.23 0.00 0.00 3.41
284 285 0.931005 GAAAACCTAGCCGCGATCTG 59.069 55.000 8.23 0.00 0.00 2.90
285 286 0.824759 AGAAAACCTAGCCGCGATCT 59.175 50.000 8.23 6.91 0.00 2.75
287 288 2.510768 CTAGAAAACCTAGCCGCGAT 57.489 50.000 8.23 0.00 38.53 4.58
294 295 4.446371 CAGGATGTGGCTAGAAAACCTAG 58.554 47.826 0.00 0.00 46.05 3.02
295 296 3.370527 GCAGGATGTGGCTAGAAAACCTA 60.371 47.826 0.00 0.00 39.31 3.08
296 297 2.619074 GCAGGATGTGGCTAGAAAACCT 60.619 50.000 0.00 0.00 39.31 3.50
297 298 1.745653 GCAGGATGTGGCTAGAAAACC 59.254 52.381 0.00 0.00 39.31 3.27
298 299 1.398390 CGCAGGATGTGGCTAGAAAAC 59.602 52.381 0.00 0.00 44.40 2.43
299 300 1.737838 CGCAGGATGTGGCTAGAAAA 58.262 50.000 0.00 0.00 44.40 2.29
300 301 3.458872 CGCAGGATGTGGCTAGAAA 57.541 52.632 0.00 0.00 44.40 2.52
321 322 3.573491 GATAAGGTGTGCGGCGGC 61.573 66.667 9.78 9.68 40.52 6.53
322 323 3.261951 CGATAAGGTGTGCGGCGG 61.262 66.667 9.78 0.00 0.00 6.13
323 324 3.925238 GCGATAAGGTGTGCGGCG 61.925 66.667 0.51 0.51 0.00 6.46
324 325 2.511600 AGCGATAAGGTGTGCGGC 60.512 61.111 0.00 0.00 0.00 6.53
325 326 3.398920 CAGCGATAAGGTGTGCGG 58.601 61.111 0.00 0.00 42.98 5.69
331 332 2.590092 GGGTGGCAGCGATAAGGT 59.410 61.111 10.99 0.00 0.00 3.50
332 333 2.203209 GGGGTGGCAGCGATAAGG 60.203 66.667 10.99 0.00 0.00 2.69
333 334 1.227674 GAGGGGTGGCAGCGATAAG 60.228 63.158 10.99 0.00 0.00 1.73
334 335 2.908015 GAGGGGTGGCAGCGATAA 59.092 61.111 10.99 0.00 0.00 1.75
335 336 3.536917 CGAGGGGTGGCAGCGATA 61.537 66.667 10.99 0.00 0.00 2.92
361 362 4.452733 GAGACGTTGGCGGGGAGG 62.453 72.222 0.00 0.00 43.45 4.30
362 363 3.234630 TTGAGACGTTGGCGGGGAG 62.235 63.158 0.00 0.00 43.45 4.30
363 364 3.235481 TTGAGACGTTGGCGGGGA 61.235 61.111 0.00 0.00 43.45 4.81
364 365 3.047877 GTTGAGACGTTGGCGGGG 61.048 66.667 0.00 0.00 43.45 5.73
365 366 3.411351 CGTTGAGACGTTGGCGGG 61.411 66.667 0.00 0.00 44.08 6.13
386 387 4.131088 GTGAGACGGCGAGGGGAC 62.131 72.222 16.62 0.00 0.00 4.46
390 391 2.050350 TTAGGGTGAGACGGCGAGG 61.050 63.158 16.62 0.00 0.00 4.63
391 392 1.139095 GTTAGGGTGAGACGGCGAG 59.861 63.158 16.62 0.00 0.00 5.03
393 394 1.139095 GAGTTAGGGTGAGACGGCG 59.861 63.158 4.80 4.80 0.00 6.46
394 395 1.255667 TGGAGTTAGGGTGAGACGGC 61.256 60.000 0.00 0.00 0.00 5.68
395 396 0.818296 CTGGAGTTAGGGTGAGACGG 59.182 60.000 0.00 0.00 0.00 4.79
396 397 1.473278 GACTGGAGTTAGGGTGAGACG 59.527 57.143 0.00 0.00 0.00 4.18
397 398 2.231721 GTGACTGGAGTTAGGGTGAGAC 59.768 54.545 0.00 0.00 0.00 3.36
399 400 1.550976 GGTGACTGGAGTTAGGGTGAG 59.449 57.143 0.00 0.00 0.00 3.51
400 401 1.149288 AGGTGACTGGAGTTAGGGTGA 59.851 52.381 0.00 0.00 41.13 4.02
401 402 1.645710 AGGTGACTGGAGTTAGGGTG 58.354 55.000 0.00 0.00 41.13 4.61
414 415 4.459089 GGCGAGGAGGCAGGTGAC 62.459 72.222 0.00 0.00 45.92 3.67
421 422 4.475135 GAGTTGGGGCGAGGAGGC 62.475 72.222 0.00 0.00 45.91 4.70
422 423 3.787001 GGAGTTGGGGCGAGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
423 424 4.148825 CGGAGTTGGGGCGAGGAG 62.149 72.222 0.00 0.00 0.00 3.69
433 434 4.101448 CTGGGGAGGCCGGAGTTG 62.101 72.222 5.05 0.00 0.00 3.16
442 443 2.285668 TCCTTGAGGCTGGGGAGG 60.286 66.667 0.00 0.00 34.44 4.30
443 444 3.041469 GCTCCTTGAGGCTGGGGAG 62.041 68.421 17.50 17.50 45.71 4.30
444 445 3.011517 GCTCCTTGAGGCTGGGGA 61.012 66.667 0.00 0.00 34.44 4.81
445 446 3.333219 TGCTCCTTGAGGCTGGGG 61.333 66.667 0.00 0.00 34.44 4.96
446 447 2.271497 CTGCTCCTTGAGGCTGGG 59.729 66.667 0.00 0.00 34.44 4.45
447 448 2.271497 CCTGCTCCTTGAGGCTGG 59.729 66.667 0.00 0.00 40.17 4.85
448 449 1.078567 GTCCTGCTCCTTGAGGCTG 60.079 63.158 0.00 0.00 34.44 4.85
450 451 2.125350 CGTCCTGCTCCTTGAGGC 60.125 66.667 0.00 0.00 34.44 4.70
451 452 2.125350 GCGTCCTGCTCCTTGAGG 60.125 66.667 0.00 0.00 41.73 3.86
452 453 2.125350 GGCGTCCTGCTCCTTGAG 60.125 66.667 0.00 0.00 45.43 3.02
454 455 2.125350 GAGGCGTCCTGCTCCTTG 60.125 66.667 2.98 0.00 45.43 3.61
455 456 2.604686 TGAGGCGTCCTGCTCCTT 60.605 61.111 3.56 0.00 45.43 3.36
457 458 4.459089 GGTGAGGCGTCCTGCTCC 62.459 72.222 3.56 3.02 45.43 4.70
458 459 3.240134 TTGGTGAGGCGTCCTGCTC 62.240 63.158 3.56 0.00 45.43 4.26
460 461 3.050275 GTTGGTGAGGCGTCCTGC 61.050 66.667 3.56 0.00 45.38 4.85
462 463 3.637273 GGGTTGGTGAGGCGTCCT 61.637 66.667 3.56 0.00 36.03 3.85
463 464 4.717313 GGGGTTGGTGAGGCGTCC 62.717 72.222 3.56 0.00 0.00 4.79
467 468 4.410400 CTCCGGGGTTGGTGAGGC 62.410 72.222 0.00 0.00 0.00 4.70
468 469 4.410400 GCTCCGGGGTTGGTGAGG 62.410 72.222 1.62 0.00 0.00 3.86
469 470 3.636231 TGCTCCGGGGTTGGTGAG 61.636 66.667 1.62 0.00 0.00 3.51
470 471 3.948719 GTGCTCCGGGGTTGGTGA 61.949 66.667 1.62 0.00 0.00 4.02
491 492 4.153330 TCGGGAGGTAGGGAGGCC 62.153 72.222 0.00 0.00 0.00 5.19
492 493 2.522193 CTCGGGAGGTAGGGAGGC 60.522 72.222 0.00 0.00 0.00 4.70
493 494 2.198980 CCTCGGGAGGTAGGGAGG 59.801 72.222 6.56 0.00 43.61 4.30
502 503 3.819188 GCTGAAATGCCTCGGGAG 58.181 61.111 0.00 0.00 0.00 4.30
510 511 3.192212 AGCTAGTGAAAAGGCTGAAATGC 59.808 43.478 0.00 0.00 33.50 3.56
511 512 4.456911 TGAGCTAGTGAAAAGGCTGAAATG 59.543 41.667 0.00 0.00 35.01 2.32
512 513 4.655963 TGAGCTAGTGAAAAGGCTGAAAT 58.344 39.130 0.00 0.00 35.01 2.17
514 515 3.769739 TGAGCTAGTGAAAAGGCTGAA 57.230 42.857 0.00 0.00 35.01 3.02
515 516 3.769739 TTGAGCTAGTGAAAAGGCTGA 57.230 42.857 0.00 0.00 35.01 4.26
516 517 3.755378 ACATTGAGCTAGTGAAAAGGCTG 59.245 43.478 0.00 0.00 35.01 4.85
517 518 4.026356 ACATTGAGCTAGTGAAAAGGCT 57.974 40.909 0.00 0.00 37.77 4.58
518 519 4.479619 CAACATTGAGCTAGTGAAAAGGC 58.520 43.478 0.00 0.00 0.00 4.35
519 520 4.479619 GCAACATTGAGCTAGTGAAAAGG 58.520 43.478 0.00 0.00 0.00 3.11
521 522 3.888323 TGGCAACATTGAGCTAGTGAAAA 59.112 39.130 0.00 0.00 46.17 2.29
523 524 3.138884 TGGCAACATTGAGCTAGTGAA 57.861 42.857 0.00 0.00 46.17 3.18
524 525 2.857186 TGGCAACATTGAGCTAGTGA 57.143 45.000 0.00 0.00 46.17 3.41
537 538 4.820173 AGTGAAGGTTAGTAGTTTGGCAAC 59.180 41.667 0.00 0.00 0.00 4.17
540 541 3.188667 GCAGTGAAGGTTAGTAGTTTGGC 59.811 47.826 0.00 0.00 0.00 4.52
541 542 4.385825 TGCAGTGAAGGTTAGTAGTTTGG 58.614 43.478 0.00 0.00 0.00 3.28
542 543 4.083802 GCTGCAGTGAAGGTTAGTAGTTTG 60.084 45.833 16.64 0.00 0.00 2.93
548 549 1.694150 TCAGCTGCAGTGAAGGTTAGT 59.306 47.619 16.64 0.00 0.00 2.24
549 550 2.462456 TCAGCTGCAGTGAAGGTTAG 57.538 50.000 16.64 0.00 0.00 2.34
550 551 3.338249 GAATCAGCTGCAGTGAAGGTTA 58.662 45.455 16.64 0.00 0.00 2.85
551 552 2.157738 GAATCAGCTGCAGTGAAGGTT 58.842 47.619 16.64 9.00 0.00 3.50
553 554 0.725686 CGAATCAGCTGCAGTGAAGG 59.274 55.000 16.64 7.63 0.00 3.46
555 556 1.270252 TGACGAATCAGCTGCAGTGAA 60.270 47.619 16.64 0.72 0.00 3.18
557 558 0.720027 CTGACGAATCAGCTGCAGTG 59.280 55.000 16.64 12.33 45.83 3.66
558 559 3.134401 CTGACGAATCAGCTGCAGT 57.866 52.632 16.64 5.87 45.83 4.40
571 572 0.519999 GCAAAGCTGATTCGCTGACG 60.520 55.000 0.00 0.00 40.79 4.35
572 573 0.179179 GGCAAAGCTGATTCGCTGAC 60.179 55.000 0.00 0.00 40.79 3.51
573 574 0.606130 TGGCAAAGCTGATTCGCTGA 60.606 50.000 0.00 0.00 40.79 4.26
574 575 0.455633 GTGGCAAAGCTGATTCGCTG 60.456 55.000 0.00 0.00 40.79 5.18
575 576 1.589716 GGTGGCAAAGCTGATTCGCT 61.590 55.000 0.00 0.00 43.31 4.93
576 577 1.153958 GGTGGCAAAGCTGATTCGC 60.154 57.895 0.00 0.00 0.00 4.70
577 578 0.109597 GTGGTGGCAAAGCTGATTCG 60.110 55.000 0.00 0.00 0.00 3.34
578 579 0.961019 TGTGGTGGCAAAGCTGATTC 59.039 50.000 0.00 0.00 0.00 2.52
579 580 0.963962 CTGTGGTGGCAAAGCTGATT 59.036 50.000 0.00 0.00 0.00 2.57
580 581 0.178981 ACTGTGGTGGCAAAGCTGAT 60.179 50.000 0.00 0.00 0.00 2.90
582 583 1.102809 TCACTGTGGTGGCAAAGCTG 61.103 55.000 8.11 0.00 43.17 4.24
583 584 0.395586 TTCACTGTGGTGGCAAAGCT 60.396 50.000 8.11 0.00 43.17 3.74
584 585 0.675633 ATTCACTGTGGTGGCAAAGC 59.324 50.000 8.11 0.00 43.17 3.51
585 586 1.270550 GGATTCACTGTGGTGGCAAAG 59.729 52.381 8.11 0.00 43.17 2.77
586 587 1.327303 GGATTCACTGTGGTGGCAAA 58.673 50.000 8.11 0.00 43.17 3.68
589 590 0.537143 TGTGGATTCACTGTGGTGGC 60.537 55.000 5.55 0.00 43.94 5.01
590 591 1.527034 CTGTGGATTCACTGTGGTGG 58.473 55.000 5.55 0.00 43.94 4.61
591 592 0.877071 GCTGTGGATTCACTGTGGTG 59.123 55.000 12.18 0.00 43.94 4.17
592 593 0.767375 AGCTGTGGATTCACTGTGGT 59.233 50.000 12.18 2.68 43.94 4.16
593 594 1.162698 CAGCTGTGGATTCACTGTGG 58.837 55.000 12.18 2.06 43.94 4.17
594 595 2.174363 TCAGCTGTGGATTCACTGTG 57.826 50.000 14.67 0.17 43.94 3.66
595 596 3.341823 GAATCAGCTGTGGATTCACTGT 58.658 45.455 14.67 0.00 46.26 3.55
607 608 1.129998 CGGCTTCAACAGAATCAGCTG 59.870 52.381 7.63 7.63 41.63 4.24
608 609 1.002430 TCGGCTTCAACAGAATCAGCT 59.998 47.619 0.00 0.00 0.00 4.24
609 610 1.442769 TCGGCTTCAACAGAATCAGC 58.557 50.000 0.00 0.00 0.00 4.26
610 611 2.159599 GCTTCGGCTTCAACAGAATCAG 60.160 50.000 0.00 0.00 38.08 2.90
611 612 1.806542 GCTTCGGCTTCAACAGAATCA 59.193 47.619 0.00 0.00 38.08 2.57
612 613 1.131315 GGCTTCGGCTTCAACAGAATC 59.869 52.381 0.00 0.00 41.44 2.52
614 615 0.889186 GGGCTTCGGCTTCAACAGAA 60.889 55.000 0.00 0.00 41.44 3.02
616 617 1.172180 TTGGGCTTCGGCTTCAACAG 61.172 55.000 0.00 0.00 41.44 3.16
618 619 0.318699 GTTTGGGCTTCGGCTTCAAC 60.319 55.000 0.00 0.00 41.44 3.18
621 622 0.387565 TTTGTTTGGGCTTCGGCTTC 59.612 50.000 0.00 0.00 41.44 3.86
622 623 0.827368 TTTTGTTTGGGCTTCGGCTT 59.173 45.000 0.00 0.00 41.44 4.35
623 624 0.104120 GTTTTGTTTGGGCTTCGGCT 59.896 50.000 0.00 0.00 41.44 5.52
624 625 0.878523 GGTTTTGTTTGGGCTTCGGC 60.879 55.000 0.00 0.00 40.88 5.54
626 627 3.067601 AGTTAGGTTTTGTTTGGGCTTCG 59.932 43.478 0.00 0.00 0.00 3.79
627 628 4.500887 GGAGTTAGGTTTTGTTTGGGCTTC 60.501 45.833 0.00 0.00 0.00 3.86
630 631 2.963101 AGGAGTTAGGTTTTGTTTGGGC 59.037 45.455 0.00 0.00 0.00 5.36
631 632 5.382616 AGTAGGAGTTAGGTTTTGTTTGGG 58.617 41.667 0.00 0.00 0.00 4.12
632 633 5.472478 GGAGTAGGAGTTAGGTTTTGTTTGG 59.528 44.000 0.00 0.00 0.00 3.28
633 634 6.296803 AGGAGTAGGAGTTAGGTTTTGTTTG 58.703 40.000 0.00 0.00 0.00 2.93
634 635 6.511017 AGGAGTAGGAGTTAGGTTTTGTTT 57.489 37.500 0.00 0.00 0.00 2.83
635 636 7.242322 CTAGGAGTAGGAGTTAGGTTTTGTT 57.758 40.000 0.00 0.00 0.00 2.83
650 651 2.697751 ACAAGCATGCTCCTAGGAGTAG 59.302 50.000 34.17 25.18 43.70 2.57
652 653 1.577736 ACAAGCATGCTCCTAGGAGT 58.422 50.000 34.17 17.26 43.70 3.85
653 654 2.547642 GCTACAAGCATGCTCCTAGGAG 60.548 54.545 31.35 31.35 41.89 3.69
655 656 1.415659 AGCTACAAGCATGCTCCTAGG 59.584 52.381 22.93 11.47 45.56 3.02
658 659 3.776616 GAGCTACAAGCATGCTCCT 57.223 52.632 22.93 11.49 45.56 3.69
660 661 1.791785 GATCGAGCTACAAGCATGCTC 59.208 52.381 22.93 8.06 45.56 4.26
662 663 1.863267 AGATCGAGCTACAAGCATGC 58.137 50.000 10.51 10.51 45.56 4.06
663 664 4.871993 AAAAGATCGAGCTACAAGCATG 57.128 40.909 2.34 0.00 45.56 4.06
687 688 8.868522 ACCAAATTCATTGATTAGTGAGAGAA 57.131 30.769 0.00 0.00 41.85 2.87
688 689 9.605275 CTACCAAATTCATTGATTAGTGAGAGA 57.395 33.333 0.00 0.00 41.85 3.10
689 690 9.605275 TCTACCAAATTCATTGATTAGTGAGAG 57.395 33.333 0.00 0.00 41.85 3.20
690 691 9.383519 GTCTACCAAATTCATTGATTAGTGAGA 57.616 33.333 0.00 0.00 41.85 3.27
691 692 8.331022 CGTCTACCAAATTCATTGATTAGTGAG 58.669 37.037 0.00 0.00 41.85 3.51
692 693 7.822334 ACGTCTACCAAATTCATTGATTAGTGA 59.178 33.333 0.00 0.00 41.85 3.41
693 694 7.974675 ACGTCTACCAAATTCATTGATTAGTG 58.025 34.615 0.00 0.00 41.85 2.74
694 695 8.450964 CAACGTCTACCAAATTCATTGATTAGT 58.549 33.333 0.00 0.00 41.85 2.24
695 696 7.429340 GCAACGTCTACCAAATTCATTGATTAG 59.571 37.037 0.00 0.00 41.85 1.73
696 697 7.120579 AGCAACGTCTACCAAATTCATTGATTA 59.879 33.333 0.00 0.00 41.85 1.75
697 698 6.071952 AGCAACGTCTACCAAATTCATTGATT 60.072 34.615 0.00 0.00 41.85 2.57
698 699 5.415701 AGCAACGTCTACCAAATTCATTGAT 59.584 36.000 0.00 0.00 41.85 2.57
700 701 5.046910 AGCAACGTCTACCAAATTCATTG 57.953 39.130 0.00 0.00 38.84 2.82
889 2326 0.034863 GTTGGGAGGACGGCCAATTA 60.035 55.000 11.69 0.00 36.29 1.40
1188 2634 2.442272 AGCTCGCGGTAGGGTGAT 60.442 61.111 6.13 0.00 0.00 3.06
1191 2637 2.678934 TTGAGCTCGCGGTAGGGT 60.679 61.111 6.13 0.00 0.00 4.34
1899 3345 0.741221 GTTCTGATGGGTCGGACTGC 60.741 60.000 8.23 0.00 39.44 4.40
1954 3400 2.998670 CAGATGAGTACACCTGCACAAG 59.001 50.000 0.00 0.00 30.32 3.16
1985 3431 0.173708 CTGGAGGTACTTGGACTCGC 59.826 60.000 0.00 0.00 41.55 5.03
2253 3705 5.069781 GTCAATATCTGCTACCTCCTCAAGT 59.930 44.000 0.00 0.00 0.00 3.16
2405 3857 3.446873 AGCCGGTGAATCAATTGCATTTA 59.553 39.130 1.90 0.00 0.00 1.40
2465 3917 0.615850 ACCCAGCTTCTTCCTGCTAC 59.384 55.000 0.00 0.00 37.81 3.58
2867 4343 3.902881 AGACAGAAAGCCTACCATGAG 57.097 47.619 0.00 0.00 0.00 2.90
3061 4826 9.734620 GCATATTTCTTATTGCTCACAAATACA 57.265 29.630 0.00 0.00 39.77 2.29
3106 4924 3.624410 TGATTTCAGAGCACATTCCATCG 59.376 43.478 0.00 0.00 0.00 3.84
3121 4939 1.790755 CACGTCCCGAACTGATTTCA 58.209 50.000 0.00 0.00 33.24 2.69
3263 5459 3.683587 CTGCCGAGTCGTCATCGCA 62.684 63.158 12.31 12.08 38.84 5.10
3302 5498 5.893824 TCATCCAGTGAGAAGTAGCTCATTA 59.106 40.000 0.00 0.00 45.75 1.90
3353 5551 5.726980 ACAACACCAATGCATCATAGTTT 57.273 34.783 0.00 0.00 0.00 2.66
3482 5680 5.546526 TGCCGCCTTTTGAAGAAAATTAAT 58.453 33.333 0.00 0.00 30.59 1.40
3487 5685 2.363680 TGATGCCGCCTTTTGAAGAAAA 59.636 40.909 0.00 0.00 0.00 2.29
3529 5727 6.640499 CAGATTGAAAATTAAACAAGGCGACA 59.360 34.615 0.00 0.00 0.00 4.35
3534 5732 9.762933 TTCTTCCAGATTGAAAATTAAACAAGG 57.237 29.630 0.00 0.00 0.00 3.61
3577 5775 8.571461 ACTACCTTAGTTTGGTAAAATAAGCC 57.429 34.615 13.16 0.00 43.77 4.35
3649 5847 2.041485 TGGAGCAAAACATGATGGAGGA 59.959 45.455 0.00 0.00 0.00 3.71
3650 5848 2.449464 TGGAGCAAAACATGATGGAGG 58.551 47.619 0.00 0.00 0.00 4.30
3652 5850 3.640498 TGTTTGGAGCAAAACATGATGGA 59.360 39.130 0.00 0.00 43.34 3.41
3653 5851 3.991773 CTGTTTGGAGCAAAACATGATGG 59.008 43.478 0.00 0.00 46.12 3.51
3654 5852 4.873817 TCTGTTTGGAGCAAAACATGATG 58.126 39.130 0.00 0.00 46.12 3.07
3655 5853 5.534207 TTCTGTTTGGAGCAAAACATGAT 57.466 34.783 0.00 0.00 46.12 2.45
3656 5854 4.737352 GCTTCTGTTTGGAGCAAAACATGA 60.737 41.667 0.00 9.00 46.12 3.07
3657 5855 3.492011 GCTTCTGTTTGGAGCAAAACATG 59.508 43.478 11.32 0.00 46.12 3.21
3658 5856 3.385755 AGCTTCTGTTTGGAGCAAAACAT 59.614 39.130 11.32 0.00 46.12 2.71
3659 5857 2.760092 AGCTTCTGTTTGGAGCAAAACA 59.240 40.909 10.67 10.67 45.38 2.83
3660 5858 3.118542 CAGCTTCTGTTTGGAGCAAAAC 58.881 45.455 0.00 3.49 39.90 2.43
3661 5859 2.760092 ACAGCTTCTGTTTGGAGCAAAA 59.240 40.909 0.00 0.00 42.59 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.