Multiple sequence alignment - TraesCS7B01G159100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G159100 chr7B 100.000 5548 0 0 1 5548 216665447 216670994 0.000000e+00 10246
1 TraesCS7B01G159100 chr7B 82.653 392 46 15 3288 3662 617483020 617483406 1.490000e-85 327
2 TraesCS7B01G159100 chr7B 96.667 150 3 2 5399 5548 4016665 4016518 1.190000e-61 248
3 TraesCS7B01G159100 chr7A 93.207 5403 201 56 1 5333 257929572 257924266 0.000000e+00 7792
4 TraesCS7B01G159100 chr7A 93.333 75 3 1 5334 5408 257923815 257923743 5.880000e-20 110
5 TraesCS7B01G159100 chr7D 98.166 2399 42 2 2183 4581 240779515 240781911 0.000000e+00 4185
6 TraesCS7B01G159100 chr7D 94.828 2204 61 21 1 2186 240777320 240779488 0.000000e+00 3389
7 TraesCS7B01G159100 chr7D 89.827 983 83 8 1 972 240742403 240743379 0.000000e+00 1245
8 TraesCS7B01G159100 chr7D 95.379 779 20 5 4638 5408 240782219 240782989 0.000000e+00 1225
9 TraesCS7B01G159100 chr7D 89.362 141 11 3 5410 5548 240521588 240521450 2.050000e-39 174
10 TraesCS7B01G159100 chrUn 100.000 404 0 0 3061 3464 478361522 478361925 0.000000e+00 747
11 TraesCS7B01G159100 chr3D 84.143 391 42 12 3287 3662 526055290 526054905 1.470000e-95 361
12 TraesCS7B01G159100 chr1B 82.642 386 48 14 3287 3662 94598300 94598676 1.930000e-84 324
13 TraesCS7B01G159100 chr1B 90.476 105 8 2 3044 3148 94598202 94598304 2.700000e-28 137
14 TraesCS7B01G159100 chr6D 81.633 392 38 15 3294 3662 343129899 343129519 1.510000e-75 294
15 TraesCS7B01G159100 chr1A 80.818 391 41 16 3294 3662 531648947 531648569 5.470000e-70 276
16 TraesCS7B01G159100 chr1A 80.612 392 41 21 3294 3662 520361276 520360897 2.550000e-68 270
17 TraesCS7B01G159100 chr1A 89.362 141 9 6 5411 5548 94874510 94874647 7.390000e-39 172
18 TraesCS7B01G159100 chr1A 89.362 141 9 5 5411 5548 94905122 94905259 7.390000e-39 172
19 TraesCS7B01G159100 chr6B 98.561 139 2 0 5410 5548 470810855 470810993 4.290000e-61 246
20 TraesCS7B01G159100 chr5A 98.561 139 2 0 5410 5548 565255731 565255593 4.290000e-61 246
21 TraesCS7B01G159100 chr5A 89.437 142 9 6 5410 5548 663916832 663916970 2.050000e-39 174
22 TraesCS7B01G159100 chr2B 86.713 143 15 4 5407 5545 643096859 643097001 7.440000e-34 156
23 TraesCS7B01G159100 chr6A 87.023 131 11 6 5410 5537 76764647 76764774 5.790000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G159100 chr7B 216665447 216670994 5547 False 10246 10246 100.000000 1 5548 1 chr7B.!!$F1 5547
1 TraesCS7B01G159100 chr7A 257923743 257929572 5829 True 3951 7792 93.270000 1 5408 2 chr7A.!!$R1 5407
2 TraesCS7B01G159100 chr7D 240777320 240782989 5669 False 2933 4185 96.124333 1 5408 3 chr7D.!!$F2 5407
3 TraesCS7B01G159100 chr7D 240742403 240743379 976 False 1245 1245 89.827000 1 972 1 chr7D.!!$F1 971

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 250 0.512085 CAACCGTACGCCGCTTAAAA 59.488 50.0 10.49 0.00 34.38 1.52 F
1454 1479 0.035725 TCTTGGAGCCTCATGTGCTG 60.036 55.0 15.49 3.73 39.69 4.41 F
2047 2084 0.678048 GCTTTCTCGCCTCCCATGTT 60.678 55.0 0.00 0.00 0.00 2.71 F
3512 3578 0.473755 TGAGGCACCTCTTTGCTGAA 59.526 50.0 17.34 0.00 42.56 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1616 0.665369 CGGAAGCTTCAACCGTACGT 60.665 55.000 27.02 0.0 41.47 3.57 R
2828 2894 4.056050 ACGTGAAACTTGTACCATCAGAC 58.944 43.478 0.00 0.0 31.75 3.51 R
3855 3938 1.149174 GCCTATTAGCTGCCTGCCA 59.851 57.895 0.00 0.0 44.23 4.92 R
5472 6284 0.032017 AGAGGGGGCTTGTACGAGAT 60.032 55.000 14.70 0.0 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 98 1.123928 ATTCCGTGATGACTCCTCCC 58.876 55.000 0.00 0.00 0.00 4.30
112 115 4.073549 CCTCCCGAATCGTAGAGTAGATT 58.926 47.826 15.54 0.00 43.63 2.40
232 236 1.597027 AGGGACAGCGAAACAACCG 60.597 57.895 0.00 0.00 0.00 4.44
246 250 0.512085 CAACCGTACGCCGCTTAAAA 59.488 50.000 10.49 0.00 34.38 1.52
361 371 2.029964 ACACATTTCGCCGGTCGT 59.970 55.556 16.00 0.00 39.67 4.34
368 378 2.149803 TTTCGCCGGTCGTGAGATGT 62.150 55.000 16.00 0.00 45.19 3.06
504 514 4.697756 TGCTGTGCGGGTAGTGCC 62.698 66.667 0.00 0.00 0.00 5.01
514 524 3.403936 GGTAGTGCCCATCATCCAC 57.596 57.895 0.00 0.00 0.00 4.02
599 618 2.066393 CCCTCTCGCCATCTCCCAA 61.066 63.158 0.00 0.00 0.00 4.12
726 751 2.017783 GCGCGGACACACGTTCTTA 61.018 57.895 8.83 0.00 35.98 2.10
727 752 1.771044 CGCGGACACACGTTCTTAC 59.229 57.895 0.00 0.00 35.98 2.34
984 1009 0.551879 TTCGGGTTGGAGTTTTGGGA 59.448 50.000 0.00 0.00 0.00 4.37
1305 1330 4.057428 GTCTGGCTCGCCGTCACT 62.057 66.667 3.14 0.00 39.42 3.41
1353 1378 2.503920 CGGTAAGATCCGTTACCTGG 57.496 55.000 17.35 0.00 46.88 4.45
1392 1417 2.846827 TCCTCCCATTTCCTTCTCCTTC 59.153 50.000 0.00 0.00 0.00 3.46
1454 1479 0.035725 TCTTGGAGCCTCATGTGCTG 60.036 55.000 15.49 3.73 39.69 4.41
1586 1612 9.947669 CTACTACTGTGCTTCGTATAATTAAGT 57.052 33.333 0.00 0.00 0.00 2.24
1590 1616 8.991243 ACTGTGCTTCGTATAATTAAGTTGTA 57.009 30.769 0.00 0.00 0.00 2.41
1591 1617 8.866956 ACTGTGCTTCGTATAATTAAGTTGTAC 58.133 33.333 0.00 0.00 32.76 2.90
1654 1680 6.319658 TCATGTCTTCTTCCTTCAATTATGCC 59.680 38.462 0.00 0.00 0.00 4.40
1657 1683 5.415701 GTCTTCTTCCTTCAATTATGCCACA 59.584 40.000 0.00 0.00 0.00 4.17
1661 1687 5.880332 TCTTCCTTCAATTATGCCACAGTAC 59.120 40.000 0.00 0.00 0.00 2.73
1673 1710 3.393278 TGCCACAGTACTTCCCTTTAGTT 59.607 43.478 0.00 0.00 0.00 2.24
1710 1747 4.705507 AGTTTGCTCATCATCTGAAAGCAT 59.294 37.500 16.56 4.87 42.49 3.79
1801 1838 6.288294 ACTTCCATTTACAAAAGAAAAGGCC 58.712 36.000 0.00 0.00 0.00 5.19
1893 1930 8.742777 TGAAAGCTATGTTCAGAAATATTTGCT 58.257 29.630 5.17 1.87 31.29 3.91
1959 1996 9.563898 TGTGTGTACTAAGAATATTCTAACACG 57.436 33.333 27.10 16.10 38.39 4.49
1961 1998 7.430211 TGTGTACTAAGAATATTCTAACACGCG 59.570 37.037 27.10 3.53 38.39 6.01
1968 2005 1.448985 ATTCTAACACGCGGCATGTT 58.551 45.000 18.80 18.80 42.78 2.71
2047 2084 0.678048 GCTTTCTCGCCTCCCATGTT 60.678 55.000 0.00 0.00 0.00 2.71
2828 2894 1.007336 GTCACAGACAAGTACGGCCG 61.007 60.000 26.86 26.86 32.09 6.13
3464 3530 2.017049 CGTATTTCTGGGGGCTTCTTG 58.983 52.381 0.00 0.00 0.00 3.02
3512 3578 0.473755 TGAGGCACCTCTTTGCTGAA 59.526 50.000 17.34 0.00 42.56 3.02
3517 3583 2.101415 GGCACCTCTTTGCTGAACTTTT 59.899 45.455 0.00 0.00 42.56 2.27
3555 3631 6.711277 AGTTTAGTTCATATGGAAGAGTGCA 58.289 36.000 2.13 0.00 35.82 4.57
3788 3871 7.984050 TGGAAATTCAAAGCAAACAAGAATACA 59.016 29.630 0.00 0.00 0.00 2.29
3814 3897 8.996024 TCTCAAAACACATATCGAACTGATAA 57.004 30.769 4.76 0.00 42.69 1.75
3834 3917 8.589335 TGATAAAATTATTAGACGAGTGAGCC 57.411 34.615 0.00 0.00 0.00 4.70
3855 3938 8.203485 TGAGCCAACAAAAAGAATAAAACTGAT 58.797 29.630 0.00 0.00 0.00 2.90
3997 4080 2.037772 CAGCTCGAATACAGGGGCTATT 59.962 50.000 0.00 0.00 0.00 1.73
4019 4102 1.890876 TGTTGAGAAACATGTCCCCG 58.109 50.000 0.00 0.00 0.00 5.73
4145 4228 3.340953 CTTCGCAATGGGTTGGCCG 62.341 63.158 0.00 0.00 35.83 6.13
4181 4264 0.740737 GCACATTGCTTATCGGGCTT 59.259 50.000 0.00 0.00 40.96 4.35
4274 4357 6.062095 AGCATTGTACAACTTCCTTACAGTT 58.938 36.000 11.22 0.00 34.67 3.16
4373 4456 6.717289 AGCTAACCATAACCACTCAACATTA 58.283 36.000 0.00 0.00 0.00 1.90
4395 4478 1.601419 GGGAATGGTCTCCGACGTCA 61.601 60.000 17.16 0.00 36.21 4.35
4583 4666 5.877012 TCATTGAGGAACTGATCAAAGCTAC 59.123 40.000 0.00 0.00 41.55 3.58
4732 5081 4.034394 GTCATGAAGCATTGAAGCGTATGA 59.966 41.667 0.00 0.00 40.15 2.15
4991 5347 0.917533 ATGAATCTGGCTGGAGCACT 59.082 50.000 0.20 0.00 44.36 4.40
5043 5399 6.274322 TGCCTCCCCAGTATATGTTTAAAT 57.726 37.500 0.00 0.00 0.00 1.40
5118 5475 6.905609 CCGCTAGGAATTTCTTTATTTCGTTC 59.094 38.462 0.00 0.00 41.02 3.95
5181 5541 7.234371 ACACTCACTAGATATATGCAGGTCAAT 59.766 37.037 0.00 0.00 0.00 2.57
5198 5558 6.710744 CAGGTCAATAGTGGTAGAAAAACACT 59.289 38.462 0.85 0.85 46.30 3.55
5222 5582 8.850156 ACTGCAACAAAGTCAATAGAAAATACT 58.150 29.630 0.00 0.00 0.00 2.12
5224 5584 8.629158 TGCAACAAAGTCAATAGAAAATACTGT 58.371 29.630 0.00 0.00 0.00 3.55
5308 5668 6.041637 AGGGTAAAGATTTCCTCCAACAAAAC 59.958 38.462 0.00 0.00 0.00 2.43
5350 6161 6.346096 TGTAGTATTACAAAGATGTGGGAGC 58.654 40.000 0.00 0.00 40.84 4.70
5357 6168 4.406456 ACAAAGATGTGGGAGCATGTTAA 58.594 39.130 0.00 0.00 38.69 2.01
5408 6220 4.025979 CGTCTGGACACACAAAAGTAGAAC 60.026 45.833 1.63 0.00 0.00 3.01
5409 6221 4.272748 GTCTGGACACACAAAAGTAGAACC 59.727 45.833 0.00 0.00 0.00 3.62
5410 6222 4.163458 TCTGGACACACAAAAGTAGAACCT 59.837 41.667 0.00 0.00 0.00 3.50
5411 6223 4.448210 TGGACACACAAAAGTAGAACCTC 58.552 43.478 0.00 0.00 0.00 3.85
5412 6224 4.163458 TGGACACACAAAAGTAGAACCTCT 59.837 41.667 0.00 0.00 0.00 3.69
5413 6225 5.364446 TGGACACACAAAAGTAGAACCTCTA 59.636 40.000 0.00 0.00 0.00 2.43
5428 6240 9.853555 GTAGAACCTCTACTACCTAAAAGAAAC 57.146 37.037 6.58 0.00 44.45 2.78
5429 6241 8.488308 AGAACCTCTACTACCTAAAAGAAACA 57.512 34.615 0.00 0.00 0.00 2.83
5430 6242 8.586744 AGAACCTCTACTACCTAAAAGAAACAG 58.413 37.037 0.00 0.00 0.00 3.16
5431 6243 8.488308 AACCTCTACTACCTAAAAGAAACAGA 57.512 34.615 0.00 0.00 0.00 3.41
5432 6244 8.124808 ACCTCTACTACCTAAAAGAAACAGAG 57.875 38.462 0.00 0.00 0.00 3.35
5433 6245 7.729431 ACCTCTACTACCTAAAAGAAACAGAGT 59.271 37.037 0.00 0.00 0.00 3.24
5434 6246 8.030106 CCTCTACTACCTAAAAGAAACAGAGTG 58.970 40.741 0.00 0.00 0.00 3.51
5435 6247 8.474710 TCTACTACCTAAAAGAAACAGAGTGT 57.525 34.615 0.00 0.00 0.00 3.55
5436 6248 8.921205 TCTACTACCTAAAAGAAACAGAGTGTT 58.079 33.333 0.00 0.00 43.41 3.32
5437 6249 9.194271 CTACTACCTAAAAGAAACAGAGTGTTC 57.806 37.037 0.00 0.00 40.14 3.18
5438 6250 6.990939 ACTACCTAAAAGAAACAGAGTGTTCC 59.009 38.462 0.00 0.00 40.14 3.62
5439 6251 4.814771 ACCTAAAAGAAACAGAGTGTTCCG 59.185 41.667 0.00 0.00 40.14 4.30
5440 6252 4.814771 CCTAAAAGAAACAGAGTGTTCCGT 59.185 41.667 0.00 0.00 40.14 4.69
5441 6253 5.296035 CCTAAAAGAAACAGAGTGTTCCGTT 59.704 40.000 0.00 0.00 40.14 4.44
5442 6254 5.638596 AAAAGAAACAGAGTGTTCCGTTT 57.361 34.783 0.00 0.00 40.14 3.60
5443 6255 4.877323 AAGAAACAGAGTGTTCCGTTTC 57.123 40.909 7.84 7.84 40.14 2.78
5444 6256 3.203716 AGAAACAGAGTGTTCCGTTTCC 58.796 45.455 10.95 0.00 45.28 3.13
5445 6257 1.963172 AACAGAGTGTTCCGTTTCCC 58.037 50.000 0.00 0.00 35.27 3.97
5446 6258 0.108019 ACAGAGTGTTCCGTTTCCCC 59.892 55.000 0.00 0.00 0.00 4.81
5447 6259 0.396811 CAGAGTGTTCCGTTTCCCCT 59.603 55.000 0.00 0.00 0.00 4.79
5448 6260 0.685660 AGAGTGTTCCGTTTCCCCTC 59.314 55.000 0.00 0.00 0.00 4.30
5449 6261 0.685660 GAGTGTTCCGTTTCCCCTCT 59.314 55.000 0.00 0.00 0.00 3.69
5450 6262 1.071857 GAGTGTTCCGTTTCCCCTCTT 59.928 52.381 0.00 0.00 0.00 2.85
5451 6263 2.301009 GAGTGTTCCGTTTCCCCTCTTA 59.699 50.000 0.00 0.00 0.00 2.10
5452 6264 2.038164 AGTGTTCCGTTTCCCCTCTTAC 59.962 50.000 0.00 0.00 0.00 2.34
5453 6265 1.001181 TGTTCCGTTTCCCCTCTTACG 59.999 52.381 0.00 0.00 0.00 3.18
5454 6266 1.001293 GTTCCGTTTCCCCTCTTACGT 59.999 52.381 0.00 0.00 32.45 3.57
5455 6267 1.341080 TCCGTTTCCCCTCTTACGTT 58.659 50.000 0.00 0.00 32.45 3.99
5456 6268 1.693606 TCCGTTTCCCCTCTTACGTTT 59.306 47.619 0.00 0.00 32.45 3.60
5457 6269 2.071540 CCGTTTCCCCTCTTACGTTTC 58.928 52.381 0.00 0.00 32.45 2.78
5458 6270 2.071540 CGTTTCCCCTCTTACGTTTCC 58.928 52.381 0.00 0.00 0.00 3.13
5459 6271 2.430465 GTTTCCCCTCTTACGTTTCCC 58.570 52.381 0.00 0.00 0.00 3.97
5460 6272 0.986527 TTCCCCTCTTACGTTTCCCC 59.013 55.000 0.00 0.00 0.00 4.81
5461 6273 0.117742 TCCCCTCTTACGTTTCCCCT 59.882 55.000 0.00 0.00 0.00 4.79
5462 6274 0.989602 CCCCTCTTACGTTTCCCCTT 59.010 55.000 0.00 0.00 0.00 3.95
5463 6275 1.065636 CCCCTCTTACGTTTCCCCTTC 60.066 57.143 0.00 0.00 0.00 3.46
5464 6276 1.405121 CCCTCTTACGTTTCCCCTTCG 60.405 57.143 0.00 0.00 0.00 3.79
5465 6277 1.274447 CCTCTTACGTTTCCCCTTCGT 59.726 52.381 0.00 0.00 40.78 3.85
5466 6278 2.603953 CTCTTACGTTTCCCCTTCGTC 58.396 52.381 0.00 0.00 38.69 4.20
5467 6279 1.273327 TCTTACGTTTCCCCTTCGTCC 59.727 52.381 0.00 0.00 38.69 4.79
5468 6280 1.001181 CTTACGTTTCCCCTTCGTCCA 59.999 52.381 0.00 0.00 38.69 4.02
5469 6281 1.047002 TACGTTTCCCCTTCGTCCAA 58.953 50.000 0.00 0.00 38.69 3.53
5470 6282 0.533531 ACGTTTCCCCTTCGTCCAAC 60.534 55.000 0.00 0.00 32.26 3.77
5471 6283 1.232621 CGTTTCCCCTTCGTCCAACC 61.233 60.000 0.00 0.00 0.00 3.77
5472 6284 0.179012 GTTTCCCCTTCGTCCAACCA 60.179 55.000 0.00 0.00 0.00 3.67
5473 6285 0.774908 TTTCCCCTTCGTCCAACCAT 59.225 50.000 0.00 0.00 0.00 3.55
5474 6286 0.326927 TTCCCCTTCGTCCAACCATC 59.673 55.000 0.00 0.00 0.00 3.51
5475 6287 0.546747 TCCCCTTCGTCCAACCATCT 60.547 55.000 0.00 0.00 0.00 2.90
5476 6288 0.107654 CCCCTTCGTCCAACCATCTC 60.108 60.000 0.00 0.00 0.00 2.75
5477 6289 0.460284 CCCTTCGTCCAACCATCTCG 60.460 60.000 0.00 0.00 0.00 4.04
5478 6290 0.246635 CCTTCGTCCAACCATCTCGT 59.753 55.000 0.00 0.00 0.00 4.18
5479 6291 1.475280 CCTTCGTCCAACCATCTCGTA 59.525 52.381 0.00 0.00 0.00 3.43
5480 6292 2.527100 CTTCGTCCAACCATCTCGTAC 58.473 52.381 0.00 0.00 0.00 3.67
5481 6293 1.536940 TCGTCCAACCATCTCGTACA 58.463 50.000 0.00 0.00 0.00 2.90
5482 6294 1.887854 TCGTCCAACCATCTCGTACAA 59.112 47.619 0.00 0.00 0.00 2.41
5483 6295 2.094906 TCGTCCAACCATCTCGTACAAG 60.095 50.000 0.00 0.00 0.00 3.16
5484 6296 2.000447 GTCCAACCATCTCGTACAAGC 59.000 52.381 0.00 0.00 0.00 4.01
5485 6297 1.066430 TCCAACCATCTCGTACAAGCC 60.066 52.381 0.00 0.00 0.00 4.35
5486 6298 1.369625 CAACCATCTCGTACAAGCCC 58.630 55.000 0.00 0.00 0.00 5.19
5487 6299 0.252197 AACCATCTCGTACAAGCCCC 59.748 55.000 0.00 0.00 0.00 5.80
5488 6300 1.146263 CCATCTCGTACAAGCCCCC 59.854 63.158 0.00 0.00 0.00 5.40
5489 6301 1.338136 CCATCTCGTACAAGCCCCCT 61.338 60.000 0.00 0.00 0.00 4.79
5490 6302 0.105039 CATCTCGTACAAGCCCCCTC 59.895 60.000 0.00 0.00 0.00 4.30
5491 6303 0.032017 ATCTCGTACAAGCCCCCTCT 60.032 55.000 0.00 0.00 0.00 3.69
5492 6304 0.683504 TCTCGTACAAGCCCCCTCTC 60.684 60.000 0.00 0.00 0.00 3.20
5493 6305 1.677637 CTCGTACAAGCCCCCTCTCC 61.678 65.000 0.00 0.00 0.00 3.71
5494 6306 2.732619 CGTACAAGCCCCCTCTCCC 61.733 68.421 0.00 0.00 0.00 4.30
5495 6307 2.042261 TACAAGCCCCCTCTCCCC 59.958 66.667 0.00 0.00 0.00 4.81
5496 6308 2.577757 TACAAGCCCCCTCTCCCCT 61.578 63.158 0.00 0.00 0.00 4.79
5497 6309 2.132946 TACAAGCCCCCTCTCCCCTT 62.133 60.000 0.00 0.00 0.00 3.95
5498 6310 2.286502 AAGCCCCCTCTCCCCTTC 60.287 66.667 0.00 0.00 0.00 3.46
5499 6311 3.208342 AAGCCCCCTCTCCCCTTCA 62.208 63.158 0.00 0.00 0.00 3.02
5500 6312 3.093172 GCCCCCTCTCCCCTTCAG 61.093 72.222 0.00 0.00 0.00 3.02
5501 6313 3.093172 CCCCCTCTCCCCTTCAGC 61.093 72.222 0.00 0.00 0.00 4.26
5502 6314 3.474570 CCCCTCTCCCCTTCAGCG 61.475 72.222 0.00 0.00 0.00 5.18
5503 6315 2.364317 CCCTCTCCCCTTCAGCGA 60.364 66.667 0.00 0.00 0.00 4.93
5504 6316 1.764054 CCCTCTCCCCTTCAGCGAT 60.764 63.158 0.00 0.00 0.00 4.58
5505 6317 1.341156 CCCTCTCCCCTTCAGCGATT 61.341 60.000 0.00 0.00 0.00 3.34
5506 6318 0.543749 CCTCTCCCCTTCAGCGATTT 59.456 55.000 0.00 0.00 0.00 2.17
5507 6319 1.065126 CCTCTCCCCTTCAGCGATTTT 60.065 52.381 0.00 0.00 0.00 1.82
5508 6320 2.284190 CTCTCCCCTTCAGCGATTTTC 58.716 52.381 0.00 0.00 0.00 2.29
5509 6321 1.909302 TCTCCCCTTCAGCGATTTTCT 59.091 47.619 0.00 0.00 0.00 2.52
5510 6322 2.305927 TCTCCCCTTCAGCGATTTTCTT 59.694 45.455 0.00 0.00 0.00 2.52
5511 6323 3.084786 CTCCCCTTCAGCGATTTTCTTT 58.915 45.455 0.00 0.00 0.00 2.52
5512 6324 3.496331 TCCCCTTCAGCGATTTTCTTTT 58.504 40.909 0.00 0.00 0.00 2.27
5513 6325 3.506067 TCCCCTTCAGCGATTTTCTTTTC 59.494 43.478 0.00 0.00 0.00 2.29
5514 6326 3.507622 CCCCTTCAGCGATTTTCTTTTCT 59.492 43.478 0.00 0.00 0.00 2.52
5515 6327 4.379918 CCCCTTCAGCGATTTTCTTTTCTC 60.380 45.833 0.00 0.00 0.00 2.87
5516 6328 4.379918 CCCTTCAGCGATTTTCTTTTCTCC 60.380 45.833 0.00 0.00 0.00 3.71
5517 6329 4.379918 CCTTCAGCGATTTTCTTTTCTCCC 60.380 45.833 0.00 0.00 0.00 4.30
5518 6330 4.021102 TCAGCGATTTTCTTTTCTCCCT 57.979 40.909 0.00 0.00 0.00 4.20
5519 6331 4.003648 TCAGCGATTTTCTTTTCTCCCTC 58.996 43.478 0.00 0.00 0.00 4.30
5520 6332 3.127721 CAGCGATTTTCTTTTCTCCCTCC 59.872 47.826 0.00 0.00 0.00 4.30
5521 6333 3.081804 GCGATTTTCTTTTCTCCCTCCA 58.918 45.455 0.00 0.00 0.00 3.86
5522 6334 3.696548 GCGATTTTCTTTTCTCCCTCCAT 59.303 43.478 0.00 0.00 0.00 3.41
5523 6335 4.201960 GCGATTTTCTTTTCTCCCTCCATC 60.202 45.833 0.00 0.00 0.00 3.51
5524 6336 4.034510 CGATTTTCTTTTCTCCCTCCATCG 59.965 45.833 0.00 0.00 0.00 3.84
5525 6337 3.350219 TTTCTTTTCTCCCTCCATCGG 57.650 47.619 0.00 0.00 0.00 4.18
5526 6338 1.952621 TCTTTTCTCCCTCCATCGGT 58.047 50.000 0.00 0.00 0.00 4.69
5527 6339 2.266279 TCTTTTCTCCCTCCATCGGTT 58.734 47.619 0.00 0.00 0.00 4.44
5528 6340 2.642807 TCTTTTCTCCCTCCATCGGTTT 59.357 45.455 0.00 0.00 0.00 3.27
5529 6341 3.073946 TCTTTTCTCCCTCCATCGGTTTT 59.926 43.478 0.00 0.00 0.00 2.43
5530 6342 2.781681 TTCTCCCTCCATCGGTTTTC 57.218 50.000 0.00 0.00 0.00 2.29
5531 6343 1.952621 TCTCCCTCCATCGGTTTTCT 58.047 50.000 0.00 0.00 0.00 2.52
5532 6344 1.831736 TCTCCCTCCATCGGTTTTCTC 59.168 52.381 0.00 0.00 0.00 2.87
5533 6345 0.909623 TCCCTCCATCGGTTTTCTCC 59.090 55.000 0.00 0.00 0.00 3.71
5534 6346 0.107165 CCCTCCATCGGTTTTCTCCC 60.107 60.000 0.00 0.00 0.00 4.30
5535 6347 0.912486 CCTCCATCGGTTTTCTCCCT 59.088 55.000 0.00 0.00 0.00 4.20
5536 6348 1.407437 CCTCCATCGGTTTTCTCCCTG 60.407 57.143 0.00 0.00 0.00 4.45
5537 6349 0.035439 TCCATCGGTTTTCTCCCTGC 60.035 55.000 0.00 0.00 0.00 4.85
5538 6350 1.032114 CCATCGGTTTTCTCCCTGCC 61.032 60.000 0.00 0.00 0.00 4.85
5539 6351 1.078426 ATCGGTTTTCTCCCTGCCG 60.078 57.895 0.00 0.00 43.32 5.69
5540 6352 2.536997 ATCGGTTTTCTCCCTGCCGG 62.537 60.000 0.00 0.00 42.35 6.13
5541 6353 2.434774 GGTTTTCTCCCTGCCGGT 59.565 61.111 1.90 0.00 0.00 5.28
5542 6354 1.228459 GGTTTTCTCCCTGCCGGTT 60.228 57.895 1.90 0.00 0.00 4.44
5543 6355 0.826256 GGTTTTCTCCCTGCCGGTTT 60.826 55.000 1.90 0.00 0.00 3.27
5544 6356 1.037493 GTTTTCTCCCTGCCGGTTTT 58.963 50.000 1.90 0.00 0.00 2.43
5545 6357 2.232399 GTTTTCTCCCTGCCGGTTTTA 58.768 47.619 1.90 0.00 0.00 1.52
5546 6358 2.823747 GTTTTCTCCCTGCCGGTTTTAT 59.176 45.455 1.90 0.00 0.00 1.40
5547 6359 2.413310 TTCTCCCTGCCGGTTTTATC 57.587 50.000 1.90 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 98 9.160576 CTTTTCTACAATCTACTCTACGATTCG 57.839 37.037 4.14 4.14 0.00 3.34
112 115 8.817092 TTCTTTTCCCTTCTTTCTTTTCTACA 57.183 30.769 0.00 0.00 0.00 2.74
122 125 9.813826 TCTTTCTCATATTCTTTTCCCTTCTTT 57.186 29.630 0.00 0.00 0.00 2.52
232 236 0.786806 GTGCGTTTTAAGCGGCGTAC 60.787 55.000 9.37 0.00 37.44 3.67
246 250 1.263217 GAAATGGTCGTTTCTGTGCGT 59.737 47.619 8.05 0.00 35.67 5.24
348 358 0.806102 CATCTCACGACCGGCGAAAT 60.806 55.000 22.10 8.69 44.57 2.17
361 371 2.356278 GGGGCAAGGCACATCTCA 59.644 61.111 0.00 0.00 30.93 3.27
496 506 0.179018 GGTGGATGATGGGCACTACC 60.179 60.000 0.00 0.00 37.93 3.18
497 507 0.532862 CGGTGGATGATGGGCACTAC 60.533 60.000 0.00 0.00 0.00 2.73
499 509 2.591753 CGGTGGATGATGGGCACT 59.408 61.111 0.00 0.00 0.00 4.40
500 510 3.211963 GCGGTGGATGATGGGCAC 61.212 66.667 0.00 0.00 0.00 5.01
501 511 4.854924 CGCGGTGGATGATGGGCA 62.855 66.667 0.00 0.00 0.00 5.36
504 514 2.592574 ATGCGCGGTGGATGATGG 60.593 61.111 8.83 0.00 0.00 3.51
506 516 2.662857 CGATGCGCGGTGGATGAT 60.663 61.111 8.83 0.00 36.03 2.45
532 549 1.219522 CCGGACTTTGACACGACACC 61.220 60.000 0.00 0.00 0.00 4.16
581 600 2.037620 CTTGGGAGATGGCGAGAGGG 62.038 65.000 0.00 0.00 0.00 4.30
664 689 2.868044 GCAGGAGCAAGTCGAGAAAAGA 60.868 50.000 0.00 0.00 41.58 2.52
726 751 1.269448 CTGGCGTTGTTTATTGCTGGT 59.731 47.619 0.00 0.00 0.00 4.00
727 752 1.981254 CTGGCGTTGTTTATTGCTGG 58.019 50.000 0.00 0.00 0.00 4.85
959 984 1.519408 AACTCCAACCCGAATCAACG 58.481 50.000 0.00 0.00 0.00 4.10
1278 1303 1.079336 GAGCCAGACCCAACCGTAC 60.079 63.158 0.00 0.00 0.00 3.67
1353 1378 4.323868 GGAGGACTATAATGATTGGAGGGC 60.324 50.000 0.00 0.00 0.00 5.19
1454 1479 3.505464 AAAATCAGCTCAATCTGCAGC 57.495 42.857 9.47 0.00 34.19 5.25
1584 1610 2.035066 AGCTTCAACCGTACGTACAACT 59.965 45.455 24.50 5.63 0.00 3.16
1585 1611 2.397549 AGCTTCAACCGTACGTACAAC 58.602 47.619 24.50 1.37 0.00 3.32
1586 1612 2.798976 AGCTTCAACCGTACGTACAA 57.201 45.000 24.50 10.38 0.00 2.41
1587 1613 2.607771 GGAAGCTTCAACCGTACGTACA 60.608 50.000 27.02 2.49 0.00 2.90
1590 1616 0.665369 CGGAAGCTTCAACCGTACGT 60.665 55.000 27.02 0.00 41.47 3.57
1591 1617 1.349259 CCGGAAGCTTCAACCGTACG 61.349 60.000 27.02 18.16 44.34 3.67
1654 1680 6.145048 CGTGTTAACTAAAGGGAAGTACTGTG 59.855 42.308 7.22 0.00 0.00 3.66
1657 1683 5.233225 GCGTGTTAACTAAAGGGAAGTACT 58.767 41.667 7.22 0.00 0.00 2.73
1661 1687 3.319755 TCGCGTGTTAACTAAAGGGAAG 58.680 45.455 5.77 0.00 0.00 3.46
1673 1710 1.493772 CAAACTGGTCTCGCGTGTTA 58.506 50.000 5.77 0.00 0.00 2.41
1710 1747 2.676750 GCGTGATTGACTGACCCATGTA 60.677 50.000 0.00 0.00 0.00 2.29
1801 1838 5.005299 GGTGTTCCAAAACAAGAAATTCACG 59.995 40.000 0.00 0.00 46.56 4.35
1968 2005 3.642705 CGATGACTCGGAAGCATATTCA 58.357 45.455 0.00 0.00 41.27 2.57
2766 2832 5.935206 TGAACATTAAAGCGATGACTACCAA 59.065 36.000 0.00 0.00 0.00 3.67
2828 2894 4.056050 ACGTGAAACTTGTACCATCAGAC 58.944 43.478 0.00 0.00 31.75 3.51
3464 3530 9.646427 AGTTCTTACTTGACAATAATCTCTGAC 57.354 33.333 0.00 0.00 0.00 3.51
3512 3578 9.041354 ACTAAACTCCTAGATGAGATGAAAAGT 57.959 33.333 3.32 0.00 36.22 2.66
3517 3583 8.774546 ATGAACTAAACTCCTAGATGAGATGA 57.225 34.615 3.32 0.00 36.22 2.92
3650 3733 7.666623 ACCAATAACAACTGAAATGGGTAAAG 58.333 34.615 0.00 0.00 0.00 1.85
3788 3871 9.599866 TTATCAGTTCGATATGTGTTTTGAGAT 57.400 29.630 0.00 0.00 36.47 2.75
3814 3897 6.170506 TGTTGGCTCACTCGTCTAATAATTT 58.829 36.000 0.00 0.00 0.00 1.82
3834 3917 8.140677 TGCCATCAGTTTTATTCTTTTTGTTG 57.859 30.769 0.00 0.00 0.00 3.33
3855 3938 1.149174 GCCTATTAGCTGCCTGCCA 59.851 57.895 0.00 0.00 44.23 4.92
3929 4012 4.827835 ACAGAGCAACTCAGTCACTACTTA 59.172 41.667 0.00 0.00 31.97 2.24
3931 4014 3.226777 ACAGAGCAACTCAGTCACTACT 58.773 45.455 0.00 0.00 35.91 2.57
3997 4080 3.067461 CGGGGACATGTTTCTCAACAAAA 59.933 43.478 0.00 0.00 46.17 2.44
4145 4228 1.029408 TGCCAATGTACATCGTGCCC 61.029 55.000 9.23 0.00 0.00 5.36
4151 4234 3.788333 AGCAATGTGCCAATGTACATC 57.212 42.857 9.23 0.00 45.57 3.06
4328 4411 0.246635 GCTTCCTGGCTTCGTAGTCA 59.753 55.000 0.00 0.00 34.18 3.41
4373 4456 4.887957 TCGGAGACCATTCCCAGT 57.112 55.556 0.00 0.00 33.46 4.00
4583 4666 3.012518 CACCCTTCTGCTTTGATACCTG 58.987 50.000 0.00 0.00 0.00 4.00
4620 4703 4.712122 AAACAGAAGGAAGACGCAAAAA 57.288 36.364 0.00 0.00 0.00 1.94
4621 4704 5.278266 CCATAAACAGAAGGAAGACGCAAAA 60.278 40.000 0.00 0.00 0.00 2.44
4732 5081 1.987074 GGACAAAACGCACAAAAACGT 59.013 42.857 0.00 0.00 46.07 3.99
5094 5450 6.623743 CGAACGAAATAAAGAAATTCCTAGCG 59.376 38.462 0.00 0.00 0.00 4.26
5118 5475 1.135139 AGCACTACTGCATCCACTACG 59.865 52.381 0.00 0.00 46.97 3.51
5181 5541 5.186942 TGTTGCAGTGTTTTTCTACCACTA 58.813 37.500 0.00 0.00 37.34 2.74
5198 5558 8.629158 ACAGTATTTTCTATTGACTTTGTTGCA 58.371 29.630 0.00 0.00 0.00 4.08
5225 5585 7.491696 GCGTCTCTTTATACTAGTTTCCATTGT 59.508 37.037 0.00 0.00 0.00 2.71
5226 5586 7.491372 TGCGTCTCTTTATACTAGTTTCCATTG 59.509 37.037 0.00 0.00 0.00 2.82
5227 5587 7.553334 TGCGTCTCTTTATACTAGTTTCCATT 58.447 34.615 0.00 0.00 0.00 3.16
5228 5588 7.108841 TGCGTCTCTTTATACTAGTTTCCAT 57.891 36.000 0.00 0.00 0.00 3.41
5285 5645 6.811954 TGTTTTGTTGGAGGAAATCTTTACC 58.188 36.000 0.00 0.00 0.00 2.85
5330 5690 5.590259 ACATGCTCCCACATCTTTGTAATAC 59.410 40.000 0.00 0.00 33.76 1.89
5331 5691 5.754782 ACATGCTCCCACATCTTTGTAATA 58.245 37.500 0.00 0.00 33.76 0.98
5332 5692 4.603131 ACATGCTCCCACATCTTTGTAAT 58.397 39.130 0.00 0.00 33.76 1.89
5337 5697 4.922206 TCTTAACATGCTCCCACATCTTT 58.078 39.130 0.00 0.00 0.00 2.52
5408 6220 8.030106 CACTCTGTTTCTTTTAGGTAGTAGAGG 58.970 40.741 0.00 0.00 33.95 3.69
5409 6221 8.578151 ACACTCTGTTTCTTTTAGGTAGTAGAG 58.422 37.037 0.00 0.00 35.35 2.43
5410 6222 8.474710 ACACTCTGTTTCTTTTAGGTAGTAGA 57.525 34.615 0.00 0.00 0.00 2.59
5411 6223 9.194271 GAACACTCTGTTTCTTTTAGGTAGTAG 57.806 37.037 0.00 0.00 41.28 2.57
5412 6224 8.146412 GGAACACTCTGTTTCTTTTAGGTAGTA 58.854 37.037 0.00 0.00 41.28 1.82
5413 6225 6.990939 GGAACACTCTGTTTCTTTTAGGTAGT 59.009 38.462 0.00 0.00 41.28 2.73
5414 6226 6.145696 CGGAACACTCTGTTTCTTTTAGGTAG 59.854 42.308 0.00 0.00 41.28 3.18
5415 6227 5.987347 CGGAACACTCTGTTTCTTTTAGGTA 59.013 40.000 0.00 0.00 41.28 3.08
5416 6228 4.814771 CGGAACACTCTGTTTCTTTTAGGT 59.185 41.667 0.00 0.00 41.28 3.08
5417 6229 4.814771 ACGGAACACTCTGTTTCTTTTAGG 59.185 41.667 0.00 0.00 41.28 2.69
5418 6230 5.986004 ACGGAACACTCTGTTTCTTTTAG 57.014 39.130 0.00 0.00 41.28 1.85
5427 6239 0.108019 GGGGAAACGGAACACTCTGT 59.892 55.000 0.00 0.00 43.40 3.41
5428 6240 0.396811 AGGGGAAACGGAACACTCTG 59.603 55.000 0.00 0.00 0.00 3.35
5429 6241 0.685660 GAGGGGAAACGGAACACTCT 59.314 55.000 0.00 0.00 0.00 3.24
5430 6242 0.685660 AGAGGGGAAACGGAACACTC 59.314 55.000 0.00 0.00 0.00 3.51
5431 6243 1.137697 AAGAGGGGAAACGGAACACT 58.862 50.000 0.00 0.00 0.00 3.55
5432 6244 2.420642 GTAAGAGGGGAAACGGAACAC 58.579 52.381 0.00 0.00 0.00 3.32
5433 6245 1.001181 CGTAAGAGGGGAAACGGAACA 59.999 52.381 0.00 0.00 43.02 3.18
5434 6246 1.001293 ACGTAAGAGGGGAAACGGAAC 59.999 52.381 0.00 0.00 39.57 3.62
5435 6247 1.341080 ACGTAAGAGGGGAAACGGAA 58.659 50.000 0.00 0.00 39.57 4.30
5436 6248 1.341080 AACGTAAGAGGGGAAACGGA 58.659 50.000 0.00 0.00 39.57 4.69
5437 6249 2.071540 GAAACGTAAGAGGGGAAACGG 58.928 52.381 0.00 0.00 39.57 4.44
5438 6250 2.071540 GGAAACGTAAGAGGGGAAACG 58.928 52.381 0.00 0.00 43.62 3.60
5439 6251 2.430465 GGGAAACGTAAGAGGGGAAAC 58.570 52.381 0.00 0.00 43.62 2.78
5440 6252 1.352017 GGGGAAACGTAAGAGGGGAAA 59.648 52.381 0.00 0.00 43.62 3.13
5441 6253 0.986527 GGGGAAACGTAAGAGGGGAA 59.013 55.000 0.00 0.00 43.62 3.97
5442 6254 0.117742 AGGGGAAACGTAAGAGGGGA 59.882 55.000 0.00 0.00 43.62 4.81
5443 6255 0.989602 AAGGGGAAACGTAAGAGGGG 59.010 55.000 0.00 0.00 43.62 4.79
5444 6256 1.405121 CGAAGGGGAAACGTAAGAGGG 60.405 57.143 0.00 0.00 43.62 4.30
5445 6257 1.274447 ACGAAGGGGAAACGTAAGAGG 59.726 52.381 0.00 0.00 43.62 3.69
5446 6258 2.603953 GACGAAGGGGAAACGTAAGAG 58.396 52.381 0.00 0.00 40.29 2.85
5447 6259 1.273327 GGACGAAGGGGAAACGTAAGA 59.727 52.381 0.00 0.00 40.29 2.10
5448 6260 1.001181 TGGACGAAGGGGAAACGTAAG 59.999 52.381 0.00 0.00 40.29 2.34
5449 6261 1.047002 TGGACGAAGGGGAAACGTAA 58.953 50.000 0.00 0.00 40.29 3.18
5450 6262 1.047002 TTGGACGAAGGGGAAACGTA 58.953 50.000 0.00 0.00 40.29 3.57
5451 6263 0.533531 GTTGGACGAAGGGGAAACGT 60.534 55.000 0.00 0.00 42.84 3.99
5452 6264 1.232621 GGTTGGACGAAGGGGAAACG 61.233 60.000 0.00 0.00 0.00 3.60
5453 6265 0.179012 TGGTTGGACGAAGGGGAAAC 60.179 55.000 0.00 0.00 0.00 2.78
5454 6266 0.774908 ATGGTTGGACGAAGGGGAAA 59.225 50.000 0.00 0.00 0.00 3.13
5455 6267 0.326927 GATGGTTGGACGAAGGGGAA 59.673 55.000 0.00 0.00 0.00 3.97
5456 6268 0.546747 AGATGGTTGGACGAAGGGGA 60.547 55.000 0.00 0.00 0.00 4.81
5457 6269 0.107654 GAGATGGTTGGACGAAGGGG 60.108 60.000 0.00 0.00 0.00 4.79
5458 6270 0.460284 CGAGATGGTTGGACGAAGGG 60.460 60.000 0.00 0.00 0.00 3.95
5459 6271 0.246635 ACGAGATGGTTGGACGAAGG 59.753 55.000 0.00 0.00 0.00 3.46
5460 6272 2.094906 TGTACGAGATGGTTGGACGAAG 60.095 50.000 0.00 0.00 0.00 3.79
5461 6273 1.887854 TGTACGAGATGGTTGGACGAA 59.112 47.619 0.00 0.00 0.00 3.85
5462 6274 1.536940 TGTACGAGATGGTTGGACGA 58.463 50.000 0.00 0.00 0.00 4.20
5463 6275 2.259618 CTTGTACGAGATGGTTGGACG 58.740 52.381 3.81 0.00 0.00 4.79
5464 6276 2.000447 GCTTGTACGAGATGGTTGGAC 59.000 52.381 14.70 0.00 0.00 4.02
5465 6277 1.066430 GGCTTGTACGAGATGGTTGGA 60.066 52.381 14.70 0.00 0.00 3.53
5466 6278 1.369625 GGCTTGTACGAGATGGTTGG 58.630 55.000 14.70 0.00 0.00 3.77
5467 6279 1.369625 GGGCTTGTACGAGATGGTTG 58.630 55.000 14.70 0.00 0.00 3.77
5468 6280 0.252197 GGGGCTTGTACGAGATGGTT 59.748 55.000 14.70 0.00 0.00 3.67
5469 6281 1.623542 GGGGGCTTGTACGAGATGGT 61.624 60.000 14.70 0.00 0.00 3.55
5470 6282 1.146263 GGGGGCTTGTACGAGATGG 59.854 63.158 14.70 0.00 0.00 3.51
5471 6283 0.105039 GAGGGGGCTTGTACGAGATG 59.895 60.000 14.70 0.00 0.00 2.90
5472 6284 0.032017 AGAGGGGGCTTGTACGAGAT 60.032 55.000 14.70 0.00 0.00 2.75
5473 6285 0.683504 GAGAGGGGGCTTGTACGAGA 60.684 60.000 14.70 0.00 0.00 4.04
5474 6286 1.677637 GGAGAGGGGGCTTGTACGAG 61.678 65.000 5.68 5.68 0.00 4.18
5475 6287 1.684734 GGAGAGGGGGCTTGTACGA 60.685 63.158 0.00 0.00 0.00 3.43
5476 6288 2.732619 GGGAGAGGGGGCTTGTACG 61.733 68.421 0.00 0.00 0.00 3.67
5477 6289 2.376165 GGGGAGAGGGGGCTTGTAC 61.376 68.421 0.00 0.00 0.00 2.90
5478 6290 2.042261 GGGGAGAGGGGGCTTGTA 59.958 66.667 0.00 0.00 0.00 2.41
5479 6291 3.523681 AAGGGGAGAGGGGGCTTGT 62.524 63.158 0.00 0.00 0.00 3.16
5480 6292 2.615288 AAGGGGAGAGGGGGCTTG 60.615 66.667 0.00 0.00 0.00 4.01
5481 6293 2.286502 GAAGGGGAGAGGGGGCTT 60.287 66.667 0.00 0.00 0.00 4.35
5482 6294 3.626596 TGAAGGGGAGAGGGGGCT 61.627 66.667 0.00 0.00 0.00 5.19
5483 6295 3.093172 CTGAAGGGGAGAGGGGGC 61.093 72.222 0.00 0.00 0.00 5.80
5484 6296 3.093172 GCTGAAGGGGAGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
5485 6297 3.474570 CGCTGAAGGGGAGAGGGG 61.475 72.222 0.00 0.00 0.00 4.79
5486 6298 1.341156 AATCGCTGAAGGGGAGAGGG 61.341 60.000 0.00 0.00 40.21 4.30
5487 6299 0.543749 AAATCGCTGAAGGGGAGAGG 59.456 55.000 0.00 0.00 40.21 3.69
5488 6300 2.093235 AGAAAATCGCTGAAGGGGAGAG 60.093 50.000 0.00 0.00 40.21 3.20
5489 6301 1.909302 AGAAAATCGCTGAAGGGGAGA 59.091 47.619 0.00 0.00 40.21 3.71
5490 6302 2.409948 AGAAAATCGCTGAAGGGGAG 57.590 50.000 0.00 0.00 40.21 4.30
5491 6303 2.879103 AAGAAAATCGCTGAAGGGGA 57.121 45.000 0.00 0.00 41.11 4.81
5492 6304 3.507622 AGAAAAGAAAATCGCTGAAGGGG 59.492 43.478 0.00 0.00 0.00 4.79
5493 6305 4.379918 GGAGAAAAGAAAATCGCTGAAGGG 60.380 45.833 0.00 0.00 0.00 3.95
5494 6306 4.379918 GGGAGAAAAGAAAATCGCTGAAGG 60.380 45.833 0.00 0.00 0.00 3.46
5495 6307 4.457257 AGGGAGAAAAGAAAATCGCTGAAG 59.543 41.667 0.00 0.00 34.13 3.02
5496 6308 4.398319 AGGGAGAAAAGAAAATCGCTGAA 58.602 39.130 0.00 0.00 34.13 3.02
5497 6309 4.003648 GAGGGAGAAAAGAAAATCGCTGA 58.996 43.478 0.00 0.00 35.37 4.26
5498 6310 3.127721 GGAGGGAGAAAAGAAAATCGCTG 59.872 47.826 0.00 0.00 35.37 5.18
5499 6311 3.244911 TGGAGGGAGAAAAGAAAATCGCT 60.245 43.478 0.00 0.00 37.63 4.93
5500 6312 3.081804 TGGAGGGAGAAAAGAAAATCGC 58.918 45.455 0.00 0.00 0.00 4.58
5501 6313 4.034510 CGATGGAGGGAGAAAAGAAAATCG 59.965 45.833 0.00 0.00 0.00 3.34
5502 6314 4.336713 CCGATGGAGGGAGAAAAGAAAATC 59.663 45.833 0.00 0.00 0.00 2.17
5503 6315 4.263949 ACCGATGGAGGGAGAAAAGAAAAT 60.264 41.667 0.00 0.00 35.02 1.82
5504 6316 3.073946 ACCGATGGAGGGAGAAAAGAAAA 59.926 43.478 0.00 0.00 35.02 2.29
5505 6317 2.642807 ACCGATGGAGGGAGAAAAGAAA 59.357 45.455 0.00 0.00 35.02 2.52
5506 6318 2.266279 ACCGATGGAGGGAGAAAAGAA 58.734 47.619 0.00 0.00 35.02 2.52
5507 6319 1.952621 ACCGATGGAGGGAGAAAAGA 58.047 50.000 0.00 0.00 35.02 2.52
5508 6320 2.789409 AACCGATGGAGGGAGAAAAG 57.211 50.000 0.00 0.00 35.02 2.27
5509 6321 3.073946 AGAAAACCGATGGAGGGAGAAAA 59.926 43.478 0.00 0.00 35.02 2.29
5510 6322 2.642807 AGAAAACCGATGGAGGGAGAAA 59.357 45.455 0.00 0.00 35.02 2.52
5511 6323 2.236395 GAGAAAACCGATGGAGGGAGAA 59.764 50.000 0.00 0.00 35.02 2.87
5512 6324 1.831736 GAGAAAACCGATGGAGGGAGA 59.168 52.381 0.00 0.00 35.02 3.71
5513 6325 1.134371 GGAGAAAACCGATGGAGGGAG 60.134 57.143 0.00 0.00 35.02 4.30
5514 6326 0.909623 GGAGAAAACCGATGGAGGGA 59.090 55.000 0.00 0.00 35.02 4.20
5515 6327 0.107165 GGGAGAAAACCGATGGAGGG 60.107 60.000 0.00 0.00 35.02 4.30
5516 6328 0.912486 AGGGAGAAAACCGATGGAGG 59.088 55.000 0.00 0.00 37.30 4.30
5517 6329 2.014068 GCAGGGAGAAAACCGATGGAG 61.014 57.143 0.00 0.00 0.00 3.86
5518 6330 0.035439 GCAGGGAGAAAACCGATGGA 60.035 55.000 0.00 0.00 0.00 3.41
5519 6331 1.032114 GGCAGGGAGAAAACCGATGG 61.032 60.000 0.00 0.00 0.00 3.51
5520 6332 1.369091 CGGCAGGGAGAAAACCGATG 61.369 60.000 0.00 0.00 46.71 3.84
5521 6333 1.078426 CGGCAGGGAGAAAACCGAT 60.078 57.895 0.00 0.00 46.71 4.18
5522 6334 2.345991 CGGCAGGGAGAAAACCGA 59.654 61.111 0.00 0.00 46.71 4.69
5523 6335 2.746277 CCGGCAGGGAGAAAACCG 60.746 66.667 0.00 0.00 43.44 4.44
5524 6336 0.826256 AAACCGGCAGGGAGAAAACC 60.826 55.000 8.08 0.00 43.47 3.27
5525 6337 1.037493 AAAACCGGCAGGGAGAAAAC 58.963 50.000 8.08 0.00 43.47 2.43
5526 6338 2.660670 TAAAACCGGCAGGGAGAAAA 57.339 45.000 8.08 0.00 43.47 2.29
5527 6339 2.718563 GATAAAACCGGCAGGGAGAAA 58.281 47.619 8.08 0.00 43.47 2.52
5528 6340 2.413310 GATAAAACCGGCAGGGAGAA 57.587 50.000 8.08 0.00 43.47 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.