Multiple sequence alignment - TraesCS7B01G158800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G158800 chr7B 100.000 3384 0 0 1430 4813 215927449 215930832 0.000000e+00 6250.0
1 TraesCS7B01G158800 chr7B 100.000 1162 0 0 1 1162 215926020 215927181 0.000000e+00 2146.0
2 TraesCS7B01G158800 chr7B 90.476 63 4 2 4692 4753 623519819 623519758 1.110000e-11 82.4
3 TraesCS7B01G158800 chr7B 90.476 63 4 2 4692 4753 623534486 623534425 1.110000e-11 82.4
4 TraesCS7B01G158800 chr7A 95.413 3401 121 18 1430 4813 254385222 254388604 0.000000e+00 5384.0
5 TraesCS7B01G158800 chr7A 92.289 402 11 7 768 1162 254384708 254385096 1.960000e-153 553.0
6 TraesCS7B01G158800 chr7D 95.593 2791 80 10 1430 4204 238969879 238972642 0.000000e+00 4433.0
7 TraesCS7B01G158800 chr7D 93.588 1856 69 9 2365 4204 239348088 239349909 0.000000e+00 2723.0
8 TraesCS7B01G158800 chr7D 90.646 588 47 6 4228 4813 238972637 238973218 0.000000e+00 774.0
9 TraesCS7B01G158800 chr7D 89.865 444 41 3 4373 4813 239350092 239350534 6.990000e-158 568.0
10 TraesCS7B01G158800 chr7D 94.839 310 11 3 853 1162 238969476 238969780 3.370000e-131 479.0
11 TraesCS7B01G158800 chr7D 94.937 158 7 1 4228 4385 239349904 239350060 3.720000e-61 246.0
12 TraesCS7B01G158800 chr5B 89.247 93 9 1 2287 2379 639965317 639965226 1.090000e-21 115.0
13 TraesCS7B01G158800 chr5B 89.247 93 9 1 2287 2379 639974880 639974789 1.090000e-21 115.0
14 TraesCS7B01G158800 chr5B 75.135 185 43 3 4569 4752 315942563 315942381 3.090000e-12 84.2
15 TraesCS7B01G158800 chr5A 75.806 248 37 15 65 304 386234689 386234921 2.370000e-18 104.0
16 TraesCS7B01G158800 chr1B 78.676 136 29 0 4618 4753 659365914 659365779 1.840000e-14 91.6
17 TraesCS7B01G158800 chr1B 77.848 158 24 11 244 394 225479755 225479602 2.390000e-13 87.9
18 TraesCS7B01G158800 chr1B 75.949 158 30 7 4586 4740 364954851 364955003 1.860000e-09 75.0
19 TraesCS7B01G158800 chr1B 100.000 31 0 0 2314 2344 623732138 623732108 1.870000e-04 58.4
20 TraesCS7B01G158800 chr2D 81.982 111 14 6 598 706 53993666 53993560 6.630000e-14 89.8
21 TraesCS7B01G158800 chr6A 80.672 119 15 8 4688 4804 438026501 438026613 8.580000e-13 86.1
22 TraesCS7B01G158800 chr6A 78.151 119 18 7 589 705 37405068 37405180 8.640000e-08 69.4
23 TraesCS7B01G158800 chr3D 93.333 45 3 0 2287 2331 250923051 250923095 3.110000e-07 67.6
24 TraesCS7B01G158800 chr4B 91.111 45 4 0 2292 2336 476365170 476365126 1.450000e-05 62.1
25 TraesCS7B01G158800 chr1A 85.000 60 9 0 2287 2346 385895962 385896021 1.450000e-05 62.1
26 TraesCS7B01G158800 chr2B 100.000 28 0 0 2353 2380 323015260 323015233 9.000000e-03 52.8
27 TraesCS7B01G158800 chr2B 100.000 28 0 0 2317 2344 633577517 633577544 9.000000e-03 52.8
28 TraesCS7B01G158800 chr2B 100.000 28 0 0 2353 2380 767177647 767177674 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G158800 chr7B 215926020 215930832 4812 False 4198.000000 6250 100.000000 1 4813 2 chr7B.!!$F1 4812
1 TraesCS7B01G158800 chr7A 254384708 254388604 3896 False 2968.500000 5384 93.851000 768 4813 2 chr7A.!!$F1 4045
2 TraesCS7B01G158800 chr7D 238969476 238973218 3742 False 1895.333333 4433 93.692667 853 4813 3 chr7D.!!$F1 3960
3 TraesCS7B01G158800 chr7D 239348088 239350534 2446 False 1179.000000 2723 92.796667 2365 4813 3 chr7D.!!$F2 2448

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 637 0.107165 AAAGTTAGATGGGCCGGCTC 60.107 55.000 28.56 25.91 0.00 4.70 F
693 694 0.388134 GCGAGTAACAGGCGTCTGAA 60.388 55.000 26.48 8.51 43.49 3.02 F
696 697 0.388649 AGTAACAGGCGTCTGAAGCG 60.389 55.000 26.48 0.00 43.49 4.68 F
834 835 0.398696 TCTGGCCCGTACAACACATT 59.601 50.000 0.00 0.00 0.00 2.71 F
1601 1610 0.457443 GCCCTTGTGCTGCCTAAATC 59.543 55.000 0.00 0.00 0.00 2.17 F
1766 1775 1.608109 ACGTGCATGTTTGATTCTGCA 59.392 42.857 5.51 0.00 41.98 4.41 F
3044 3054 2.696864 CTCCCCTGGAGTGCCTAAA 58.303 57.895 0.00 0.00 44.25 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1610 1.079875 GCCAAATGCTGACATTGCCG 61.080 55.000 0.0 0.0 45.90 5.69 R
1731 1740 1.674322 ACGTAGTTGCCCACCATGC 60.674 57.895 0.0 0.0 37.78 4.06 R
1828 1837 3.826729 ACTGGCCACTTTTACATTTCTCC 59.173 43.478 0.0 0.0 0.00 3.71 R
1917 1926 4.202040 CCAAACAGCTCAACATCTGTCAAA 60.202 41.667 0.0 0.0 42.19 2.69 R
3518 3528 1.809133 TACCCTGGACAAGTTCACCA 58.191 50.000 0.0 0.0 0.00 4.17 R
3788 3798 1.612676 TCCGACGAAGAACCTTCTCA 58.387 50.000 0.0 0.0 36.28 3.27 R
4303 4362 0.106708 AAGTTGCACAAGAGAGCGGA 59.893 50.000 0.0 0.0 33.73 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.320494 ACGCAATACCACTTACATTTTTGA 57.680 33.333 0.00 0.00 0.00 2.69
26 27 6.740110 ACGCAATACCACTTACATTTTTGAA 58.260 32.000 0.00 0.00 0.00 2.69
27 28 6.639279 ACGCAATACCACTTACATTTTTGAAC 59.361 34.615 0.00 0.00 0.00 3.18
28 29 6.861055 CGCAATACCACTTACATTTTTGAACT 59.139 34.615 0.00 0.00 0.00 3.01
29 30 8.018520 CGCAATACCACTTACATTTTTGAACTA 58.981 33.333 0.00 0.00 0.00 2.24
30 31 9.855021 GCAATACCACTTACATTTTTGAACTAT 57.145 29.630 0.00 0.00 0.00 2.12
34 35 8.472007 ACCACTTACATTTTTGAACTATTCCA 57.528 30.769 0.00 0.00 0.00 3.53
35 36 9.088987 ACCACTTACATTTTTGAACTATTCCAT 57.911 29.630 0.00 0.00 0.00 3.41
36 37 9.927668 CCACTTACATTTTTGAACTATTCCATT 57.072 29.630 0.00 0.00 0.00 3.16
54 55 6.648879 TCCATTCTTTTGGAAAAGTCGATT 57.351 33.333 10.83 0.00 42.82 3.34
55 56 7.049799 TCCATTCTTTTGGAAAAGTCGATTT 57.950 32.000 10.83 0.00 42.82 2.17
56 57 8.172352 TCCATTCTTTTGGAAAAGTCGATTTA 57.828 30.769 10.83 0.00 42.82 1.40
57 58 8.634444 TCCATTCTTTTGGAAAAGTCGATTTAA 58.366 29.630 10.83 0.00 42.82 1.52
58 59 9.423061 CCATTCTTTTGGAAAAGTCGATTTAAT 57.577 29.630 10.83 1.00 44.37 1.40
236 237 8.918202 AAATCCTCAAATTTAAAAACCCTTCC 57.082 30.769 0.00 0.00 0.00 3.46
237 238 7.872061 ATCCTCAAATTTAAAAACCCTTCCT 57.128 32.000 0.00 0.00 0.00 3.36
238 239 8.966155 ATCCTCAAATTTAAAAACCCTTCCTA 57.034 30.769 0.00 0.00 0.00 2.94
239 240 8.417273 TCCTCAAATTTAAAAACCCTTCCTAG 57.583 34.615 0.00 0.00 0.00 3.02
240 241 8.228905 TCCTCAAATTTAAAAACCCTTCCTAGA 58.771 33.333 0.00 0.00 0.00 2.43
241 242 9.035890 CCTCAAATTTAAAAACCCTTCCTAGAT 57.964 33.333 0.00 0.00 0.00 1.98
254 255 9.601810 AACCCTTCCTAGATTTTGAAAATAAGT 57.398 29.630 2.71 0.00 0.00 2.24
255 256 9.601810 ACCCTTCCTAGATTTTGAAAATAAGTT 57.398 29.630 2.71 0.00 0.00 2.66
377 378 9.683069 AATCACTGATTTGAATAAAGTGTTCAC 57.317 29.630 14.05 0.00 35.47 3.18
378 379 7.351981 TCACTGATTTGAATAAAGTGTTCACG 58.648 34.615 14.05 0.00 35.47 4.35
379 380 7.011950 TCACTGATTTGAATAAAGTGTTCACGT 59.988 33.333 14.05 0.00 35.47 4.49
380 381 8.279800 CACTGATTTGAATAAAGTGTTCACGTA 58.720 33.333 0.00 0.00 35.47 3.57
381 382 8.999431 ACTGATTTGAATAAAGTGTTCACGTAT 58.001 29.630 0.00 0.00 35.47 3.06
382 383 9.825972 CTGATTTGAATAAAGTGTTCACGTATT 57.174 29.630 11.67 11.67 35.47 1.89
385 386 7.845617 TTGAATAAAGTGTTCACGTATTTGC 57.154 32.000 12.51 0.00 35.47 3.68
386 387 6.074642 TGAATAAAGTGTTCACGTATTTGCG 58.925 36.000 12.51 0.00 31.07 4.85
387 388 5.849357 ATAAAGTGTTCACGTATTTGCGA 57.151 34.783 0.00 0.00 35.59 5.10
388 389 4.539509 AAAGTGTTCACGTATTTGCGAA 57.460 36.364 0.00 0.00 35.59 4.70
389 390 4.742438 AAGTGTTCACGTATTTGCGAAT 57.258 36.364 4.21 4.21 35.59 3.34
390 391 5.849357 AAGTGTTCACGTATTTGCGAATA 57.151 34.783 1.99 1.99 35.59 1.75
391 392 5.849357 AGTGTTCACGTATTTGCGAATAA 57.151 34.783 8.01 0.00 35.59 1.40
392 393 6.417191 AGTGTTCACGTATTTGCGAATAAT 57.583 33.333 8.01 0.00 35.59 1.28
393 394 6.837992 AGTGTTCACGTATTTGCGAATAATT 58.162 32.000 8.01 0.00 35.59 1.40
394 395 6.959311 AGTGTTCACGTATTTGCGAATAATTC 59.041 34.615 8.01 0.00 35.59 2.17
395 396 6.739100 GTGTTCACGTATTTGCGAATAATTCA 59.261 34.615 8.01 0.93 35.59 2.57
396 397 7.428183 GTGTTCACGTATTTGCGAATAATTCAT 59.572 33.333 8.01 0.00 35.59 2.57
397 398 7.965655 TGTTCACGTATTTGCGAATAATTCATT 59.034 29.630 8.01 0.00 35.59 2.57
398 399 8.794406 GTTCACGTATTTGCGAATAATTCATTT 58.206 29.630 8.01 0.00 35.59 2.32
399 400 9.989869 TTCACGTATTTGCGAATAATTCATTTA 57.010 25.926 8.01 0.00 35.59 1.40
400 401 9.989869 TCACGTATTTGCGAATAATTCATTTAA 57.010 25.926 8.01 0.00 35.59 1.52
402 403 9.997482 ACGTATTTGCGAATAATTCATTTAACT 57.003 25.926 8.01 0.00 35.59 2.24
409 410 9.607988 TGCGAATAATTCATTTAACTAGGAAGA 57.392 29.630 0.00 0.00 0.00 2.87
514 515 9.682465 AGATAAAAGTTAAAGGTTACCAGATCC 57.318 33.333 3.51 0.00 0.00 3.36
515 516 8.818622 ATAAAAGTTAAAGGTTACCAGATCCC 57.181 34.615 3.51 0.00 0.00 3.85
516 517 4.857130 AGTTAAAGGTTACCAGATCCCC 57.143 45.455 3.51 0.00 0.00 4.81
517 518 4.445564 AGTTAAAGGTTACCAGATCCCCT 58.554 43.478 3.51 0.00 0.00 4.79
518 519 5.606761 AGTTAAAGGTTACCAGATCCCCTA 58.393 41.667 3.51 0.00 0.00 3.53
519 520 5.666265 AGTTAAAGGTTACCAGATCCCCTAG 59.334 44.000 3.51 0.00 0.00 3.02
520 521 2.797285 AGGTTACCAGATCCCCTAGG 57.203 55.000 3.51 0.06 0.00 3.02
521 522 1.945317 AGGTTACCAGATCCCCTAGGT 59.055 52.381 8.29 0.00 38.14 3.08
522 523 2.047830 GGTTACCAGATCCCCTAGGTG 58.952 57.143 8.29 0.00 35.62 4.00
523 524 2.359994 GGTTACCAGATCCCCTAGGTGA 60.360 54.545 8.29 1.13 35.62 4.02
524 525 3.588569 GTTACCAGATCCCCTAGGTGAT 58.411 50.000 6.43 6.43 35.62 3.06
525 526 2.109229 ACCAGATCCCCTAGGTGATG 57.891 55.000 11.92 0.00 32.04 3.07
526 527 1.356124 CCAGATCCCCTAGGTGATGG 58.644 60.000 11.92 5.49 0.00 3.51
527 528 1.356124 CAGATCCCCTAGGTGATGGG 58.644 60.000 11.92 2.90 42.98 4.00
531 532 3.660724 CCCTAGGTGATGGGGTGG 58.339 66.667 8.29 0.00 44.83 4.61
532 533 1.307866 CCCTAGGTGATGGGGTGGT 60.308 63.158 8.29 0.00 44.83 4.16
533 534 0.919289 CCCTAGGTGATGGGGTGGTT 60.919 60.000 8.29 0.00 44.83 3.67
534 535 1.626913 CCCTAGGTGATGGGGTGGTTA 60.627 57.143 8.29 0.00 44.83 2.85
535 536 1.489230 CCTAGGTGATGGGGTGGTTAC 59.511 57.143 0.00 0.00 0.00 2.50
536 537 2.193127 CTAGGTGATGGGGTGGTTACA 58.807 52.381 0.00 0.00 0.00 2.41
537 538 0.696501 AGGTGATGGGGTGGTTACAC 59.303 55.000 0.00 0.00 46.97 2.90
549 550 3.066291 TGGTTACACCAGCATACCTTG 57.934 47.619 0.00 0.00 44.79 3.61
550 551 2.640332 TGGTTACACCAGCATACCTTGA 59.360 45.455 0.00 0.00 44.79 3.02
551 552 3.265737 TGGTTACACCAGCATACCTTGAT 59.734 43.478 0.00 0.00 44.79 2.57
552 553 3.627577 GGTTACACCAGCATACCTTGATG 59.372 47.826 0.00 0.00 41.50 3.07
553 554 4.513442 GTTACACCAGCATACCTTGATGA 58.487 43.478 0.00 0.00 44.68 2.92
554 555 3.272574 ACACCAGCATACCTTGATGAG 57.727 47.619 0.00 0.00 44.68 2.90
563 564 1.144936 CCTTGATGAGGGAGGTCGC 59.855 63.158 0.00 0.00 42.26 5.19
564 565 1.333636 CCTTGATGAGGGAGGTCGCT 61.334 60.000 0.00 0.00 42.26 4.93
565 566 0.179089 CTTGATGAGGGAGGTCGCTG 60.179 60.000 0.56 0.00 39.39 5.18
566 567 1.617018 TTGATGAGGGAGGTCGCTGG 61.617 60.000 0.56 0.00 39.39 4.85
567 568 2.039624 ATGAGGGAGGTCGCTGGT 59.960 61.111 0.56 0.00 39.39 4.00
568 569 1.613630 ATGAGGGAGGTCGCTGGTT 60.614 57.895 0.56 0.00 39.39 3.67
569 570 1.617947 ATGAGGGAGGTCGCTGGTTC 61.618 60.000 0.56 0.00 39.39 3.62
570 571 2.203788 AGGGAGGTCGCTGGTTCA 60.204 61.111 0.00 0.00 37.77 3.18
571 572 1.827399 GAGGGAGGTCGCTGGTTCAA 61.827 60.000 0.56 0.00 39.39 2.69
572 573 1.201429 AGGGAGGTCGCTGGTTCAAT 61.201 55.000 0.00 0.00 37.77 2.57
573 574 0.322546 GGGAGGTCGCTGGTTCAATT 60.323 55.000 0.00 0.00 0.00 2.32
574 575 1.087501 GGAGGTCGCTGGTTCAATTC 58.912 55.000 0.00 0.00 0.00 2.17
575 576 1.610624 GGAGGTCGCTGGTTCAATTCA 60.611 52.381 0.00 0.00 0.00 2.57
576 577 1.734465 GAGGTCGCTGGTTCAATTCAG 59.266 52.381 0.00 0.00 0.00 3.02
577 578 0.804989 GGTCGCTGGTTCAATTCAGG 59.195 55.000 0.00 0.00 0.00 3.86
578 579 1.610624 GGTCGCTGGTTCAATTCAGGA 60.611 52.381 0.00 0.00 0.00 3.86
579 580 1.734465 GTCGCTGGTTCAATTCAGGAG 59.266 52.381 0.00 0.00 0.00 3.69
580 581 0.449388 CGCTGGTTCAATTCAGGAGC 59.551 55.000 0.00 0.00 0.00 4.70
581 582 1.538047 GCTGGTTCAATTCAGGAGCA 58.462 50.000 0.00 0.00 0.00 4.26
582 583 1.471684 GCTGGTTCAATTCAGGAGCAG 59.528 52.381 0.00 0.00 39.81 4.24
583 584 1.471684 CTGGTTCAATTCAGGAGCAGC 59.528 52.381 0.00 0.00 31.88 5.25
584 585 1.074405 TGGTTCAATTCAGGAGCAGCT 59.926 47.619 0.00 0.00 0.00 4.24
585 586 1.742268 GGTTCAATTCAGGAGCAGCTC 59.258 52.381 14.69 14.69 0.00 4.09
586 587 1.396301 GTTCAATTCAGGAGCAGCTCG 59.604 52.381 16.47 3.60 0.00 5.03
587 588 0.742281 TCAATTCAGGAGCAGCTCGC 60.742 55.000 16.47 9.34 42.91 5.03
597 598 3.083213 GCAGCTCGCTTTTTGTCTG 57.917 52.632 1.48 0.00 37.77 3.51
598 599 0.588252 GCAGCTCGCTTTTTGTCTGA 59.412 50.000 1.48 0.00 37.77 3.27
599 600 1.198637 GCAGCTCGCTTTTTGTCTGAT 59.801 47.619 1.48 0.00 37.77 2.90
600 601 2.351157 GCAGCTCGCTTTTTGTCTGATT 60.351 45.455 1.48 0.00 37.77 2.57
601 602 3.120199 GCAGCTCGCTTTTTGTCTGATTA 60.120 43.478 1.48 0.00 37.77 1.75
602 603 4.437930 GCAGCTCGCTTTTTGTCTGATTAT 60.438 41.667 1.48 0.00 37.77 1.28
603 604 5.220662 GCAGCTCGCTTTTTGTCTGATTATA 60.221 40.000 1.48 0.00 37.77 0.98
604 605 6.675486 GCAGCTCGCTTTTTGTCTGATTATAA 60.675 38.462 1.48 0.00 37.77 0.98
605 606 6.904011 CAGCTCGCTTTTTGTCTGATTATAAG 59.096 38.462 0.00 0.00 0.00 1.73
606 607 6.818644 AGCTCGCTTTTTGTCTGATTATAAGA 59.181 34.615 0.00 0.00 0.00 2.10
607 608 6.902417 GCTCGCTTTTTGTCTGATTATAAGAC 59.098 38.462 2.76 2.76 43.62 3.01
634 635 1.182667 AAAAAGTTAGATGGGCCGGC 58.817 50.000 21.18 21.18 0.00 6.13
635 636 0.331616 AAAAGTTAGATGGGCCGGCT 59.668 50.000 28.56 6.33 0.00 5.52
636 637 0.107165 AAAGTTAGATGGGCCGGCTC 60.107 55.000 28.56 25.91 0.00 4.70
637 638 1.271840 AAGTTAGATGGGCCGGCTCA 61.272 55.000 35.14 35.14 0.00 4.26
638 639 1.227674 GTTAGATGGGCCGGCTCAG 60.228 63.158 35.67 0.00 0.00 3.35
639 640 3.106986 TTAGATGGGCCGGCTCAGC 62.107 63.158 36.95 36.95 32.14 4.26
668 669 4.986708 GGAGGCCCCCGTTTGCAA 62.987 66.667 0.00 0.00 0.00 4.08
669 670 2.915137 GAGGCCCCCGTTTGCAAA 60.915 61.111 8.05 8.05 0.00 3.68
670 671 2.444895 AGGCCCCCGTTTGCAAAA 60.445 55.556 14.67 0.00 0.00 2.44
671 672 2.034048 GAGGCCCCCGTTTGCAAAAA 62.034 55.000 14.67 0.00 0.00 1.94
690 691 2.178521 CGCGAGTAACAGGCGTCT 59.821 61.111 0.00 0.00 44.52 4.18
691 692 2.152699 CGCGAGTAACAGGCGTCTG 61.153 63.158 17.12 17.12 44.52 3.51
692 693 1.211969 GCGAGTAACAGGCGTCTGA 59.788 57.895 26.48 0.00 43.49 3.27
693 694 0.388134 GCGAGTAACAGGCGTCTGAA 60.388 55.000 26.48 8.51 43.49 3.02
694 695 1.618861 CGAGTAACAGGCGTCTGAAG 58.381 55.000 26.48 0.00 43.49 3.02
695 696 1.351153 GAGTAACAGGCGTCTGAAGC 58.649 55.000 26.48 12.37 43.49 3.86
696 697 0.388649 AGTAACAGGCGTCTGAAGCG 60.389 55.000 26.48 0.00 43.49 4.68
705 706 1.640428 CGTCTGAAGCGCCAAATAGA 58.360 50.000 2.29 0.00 0.00 1.98
706 707 1.590238 CGTCTGAAGCGCCAAATAGAG 59.410 52.381 2.29 0.00 0.00 2.43
707 708 2.622436 GTCTGAAGCGCCAAATAGAGT 58.378 47.619 2.29 0.00 0.00 3.24
708 709 2.605366 GTCTGAAGCGCCAAATAGAGTC 59.395 50.000 2.29 0.00 0.00 3.36
709 710 2.497675 TCTGAAGCGCCAAATAGAGTCT 59.502 45.455 2.29 0.00 0.00 3.24
710 711 2.606725 CTGAAGCGCCAAATAGAGTCTG 59.393 50.000 2.29 0.00 0.00 3.51
711 712 1.328986 GAAGCGCCAAATAGAGTCTGC 59.671 52.381 2.29 0.00 0.00 4.26
712 713 0.462759 AGCGCCAAATAGAGTCTGCC 60.463 55.000 2.29 0.00 0.00 4.85
713 714 1.766143 GCGCCAAATAGAGTCTGCCG 61.766 60.000 1.86 0.00 0.00 5.69
714 715 1.766143 CGCCAAATAGAGTCTGCCGC 61.766 60.000 1.86 0.00 0.00 6.53
715 716 0.462759 GCCAAATAGAGTCTGCCGCT 60.463 55.000 1.86 0.00 0.00 5.52
716 717 1.293924 CCAAATAGAGTCTGCCGCTG 58.706 55.000 1.86 0.00 0.00 5.18
717 718 1.406069 CCAAATAGAGTCTGCCGCTGT 60.406 52.381 1.86 0.00 0.00 4.40
718 719 2.159099 CCAAATAGAGTCTGCCGCTGTA 60.159 50.000 1.86 0.00 0.00 2.74
719 720 2.860735 CAAATAGAGTCTGCCGCTGTAC 59.139 50.000 1.86 0.00 0.00 2.90
720 721 0.663688 ATAGAGTCTGCCGCTGTACG 59.336 55.000 1.86 0.00 43.15 3.67
721 722 1.989966 TAGAGTCTGCCGCTGTACGC 61.990 60.000 1.86 0.40 41.76 4.42
734 735 4.789075 TACGCGGGCTGCTCGTTC 62.789 66.667 24.18 6.63 43.27 3.95
738 739 4.069232 CGGGCTGCTCGTTCAGGA 62.069 66.667 14.93 0.00 34.74 3.86
739 740 2.347490 GGGCTGCTCGTTCAGGAA 59.653 61.111 0.00 0.00 34.74 3.36
740 741 1.302511 GGGCTGCTCGTTCAGGAAA 60.303 57.895 0.00 0.00 34.74 3.13
741 742 1.578206 GGGCTGCTCGTTCAGGAAAC 61.578 60.000 0.00 0.00 34.74 2.78
742 743 0.603975 GGCTGCTCGTTCAGGAAACT 60.604 55.000 0.00 0.00 46.44 2.66
752 753 3.936203 AGGAAACTGCGCGGACCA 61.936 61.111 25.98 0.00 41.13 4.02
753 754 2.975799 GGAAACTGCGCGGACCAA 60.976 61.111 25.98 0.00 0.00 3.67
754 755 2.548295 GGAAACTGCGCGGACCAAA 61.548 57.895 25.98 0.00 0.00 3.28
755 756 1.370051 GAAACTGCGCGGACCAAAC 60.370 57.895 25.98 4.14 0.00 2.93
756 757 2.726850 GAAACTGCGCGGACCAAACC 62.727 60.000 25.98 0.55 0.00 3.27
786 787 0.676782 CGGCCCTCCCAAGTTTACAG 60.677 60.000 0.00 0.00 0.00 2.74
790 791 0.676782 CCTCCCAAGTTTACAGGCCG 60.677 60.000 0.00 0.00 0.00 6.13
833 834 0.618458 ATCTGGCCCGTACAACACAT 59.382 50.000 0.00 0.00 0.00 3.21
834 835 0.398696 TCTGGCCCGTACAACACATT 59.601 50.000 0.00 0.00 0.00 2.71
835 836 0.802494 CTGGCCCGTACAACACATTC 59.198 55.000 0.00 0.00 0.00 2.67
836 837 0.606944 TGGCCCGTACAACACATTCC 60.607 55.000 0.00 0.00 0.00 3.01
838 839 1.065998 GGCCCGTACAACACATTCCTA 60.066 52.381 0.00 0.00 0.00 2.94
840 841 2.870411 GCCCGTACAACACATTCCTATC 59.130 50.000 0.00 0.00 0.00 2.08
841 842 3.431766 GCCCGTACAACACATTCCTATCT 60.432 47.826 0.00 0.00 0.00 1.98
843 844 5.682990 GCCCGTACAACACATTCCTATCTTA 60.683 44.000 0.00 0.00 0.00 2.10
845 846 6.479001 CCCGTACAACACATTCCTATCTTAAG 59.521 42.308 0.00 0.00 0.00 1.85
847 848 7.222224 CCGTACAACACATTCCTATCTTAAGAC 59.778 40.741 7.48 0.00 0.00 3.01
848 849 7.222224 CGTACAACACATTCCTATCTTAAGACC 59.778 40.741 7.48 0.00 0.00 3.85
849 850 6.415573 ACAACACATTCCTATCTTAAGACCC 58.584 40.000 7.48 0.00 0.00 4.46
850 851 6.012858 ACAACACATTCCTATCTTAAGACCCA 60.013 38.462 7.48 0.00 0.00 4.51
851 852 6.636454 ACACATTCCTATCTTAAGACCCAA 57.364 37.500 7.48 0.00 0.00 4.12
852 853 7.213178 ACACATTCCTATCTTAAGACCCAAT 57.787 36.000 7.48 1.53 0.00 3.16
853 854 7.283329 ACACATTCCTATCTTAAGACCCAATC 58.717 38.462 7.48 0.00 0.00 2.67
854 855 6.712547 CACATTCCTATCTTAAGACCCAATCC 59.287 42.308 7.48 0.00 0.00 3.01
855 856 5.906772 TTCCTATCTTAAGACCCAATCCC 57.093 43.478 7.48 0.00 0.00 3.85
856 857 4.903149 TCCTATCTTAAGACCCAATCCCA 58.097 43.478 7.48 0.00 0.00 4.37
857 858 4.658901 TCCTATCTTAAGACCCAATCCCAC 59.341 45.833 7.48 0.00 0.00 4.61
858 859 4.412199 CCTATCTTAAGACCCAATCCCACA 59.588 45.833 7.48 0.00 0.00 4.17
859 860 4.510167 ATCTTAAGACCCAATCCCACAG 57.490 45.455 7.48 0.00 0.00 3.66
867 868 4.089361 GACCCAATCCCACAGAGAAAAAT 58.911 43.478 0.00 0.00 0.00 1.82
872 873 5.065218 CCAATCCCACAGAGAAAAATACGAG 59.935 44.000 0.00 0.00 0.00 4.18
889 890 0.670854 GAGGTTCTTCTCACGTGGGC 60.671 60.000 17.00 0.00 34.13 5.36
993 1001 0.970937 ACATCGCGGGAGAAGGAAGA 60.971 55.000 6.13 0.00 0.00 2.87
994 1002 0.528684 CATCGCGGGAGAAGGAAGAC 60.529 60.000 6.13 0.00 0.00 3.01
1598 1607 2.035626 GGCCCTTGTGCTGCCTAA 59.964 61.111 0.00 0.00 42.01 2.69
1601 1610 0.457443 GCCCTTGTGCTGCCTAAATC 59.543 55.000 0.00 0.00 0.00 2.17
1652 1661 5.187967 AGGTCAACTGTATTCTTAGACCAGG 59.812 44.000 10.85 0.00 44.87 4.45
1698 1707 4.391405 AGCATAGACACAACATCGATCA 57.609 40.909 0.00 0.00 0.00 2.92
1711 1720 4.245660 ACATCGATCATCAAGTTTCACGT 58.754 39.130 0.00 0.00 0.00 4.49
1731 1740 5.569441 CACGTACAGAATTAGTCTCAGTGTG 59.431 44.000 0.00 0.00 32.70 3.82
1766 1775 1.608109 ACGTGCATGTTTGATTCTGCA 59.392 42.857 5.51 0.00 41.98 4.41
1828 1837 3.689649 GGTTGCCATAAGTAGTTGGACTG 59.310 47.826 0.00 0.00 34.81 3.51
1887 1896 7.223260 TCTCTTAGTCATGTTTTCGGTCTTA 57.777 36.000 0.00 0.00 0.00 2.10
1888 1897 7.313646 TCTCTTAGTCATGTTTTCGGTCTTAG 58.686 38.462 0.00 0.00 0.00 2.18
1889 1898 6.989659 TCTTAGTCATGTTTTCGGTCTTAGT 58.010 36.000 0.00 0.00 0.00 2.24
1890 1899 7.088905 TCTTAGTCATGTTTTCGGTCTTAGTC 58.911 38.462 0.00 0.00 0.00 2.59
1891 1900 5.470047 AGTCATGTTTTCGGTCTTAGTCT 57.530 39.130 0.00 0.00 0.00 3.24
1892 1901 5.471257 AGTCATGTTTTCGGTCTTAGTCTC 58.529 41.667 0.00 0.00 0.00 3.36
1893 1902 5.244178 AGTCATGTTTTCGGTCTTAGTCTCT 59.756 40.000 0.00 0.00 0.00 3.10
1894 1903 5.927115 GTCATGTTTTCGGTCTTAGTCTCTT 59.073 40.000 0.00 0.00 0.00 2.85
1917 1926 5.301835 AGATCAGTAGTTGGCATATTGCT 57.698 39.130 0.00 0.00 44.28 3.91
2327 2336 4.053295 TGCCGTTGACTTAGTACAACTTC 58.947 43.478 18.15 12.76 42.53 3.01
2376 2385 3.810721 TTTATTTTGGGACGGAGGGAA 57.189 42.857 0.00 0.00 0.00 3.97
2482 2492 6.924111 TGATTGAAGGCTTGGTAATTTCTTC 58.076 36.000 3.46 0.00 33.38 2.87
2490 2500 5.180680 GGCTTGGTAATTTCTTCGTTGTACT 59.819 40.000 0.00 0.00 0.00 2.73
2491 2501 6.369615 GGCTTGGTAATTTCTTCGTTGTACTA 59.630 38.462 0.00 0.00 0.00 1.82
2492 2502 7.412672 GGCTTGGTAATTTCTTCGTTGTACTAG 60.413 40.741 0.00 0.00 0.00 2.57
2562 2572 4.819105 ACCACTAGCTAAAGTACATGCA 57.181 40.909 0.00 0.00 0.00 3.96
2570 2580 9.046296 ACTAGCTAAAGTACATGCATTATTCAC 57.954 33.333 0.00 0.00 0.00 3.18
2664 2674 8.950208 AAGTTAGGACTAAACATATCTTGCTC 57.050 34.615 0.00 0.00 34.21 4.26
3044 3054 2.696864 CTCCCCTGGAGTGCCTAAA 58.303 57.895 0.00 0.00 44.25 1.85
3518 3528 7.620094 ACCTATGAATACTTAGACAAGGTCACT 59.380 37.037 0.00 0.00 35.97 3.41
3788 3798 1.600916 GAAAACCGTGGAGGCTGCT 60.601 57.895 7.74 0.00 46.52 4.24
3841 3851 2.416747 GATTGCAAACCTTTTGGAGCC 58.583 47.619 1.71 0.00 44.07 4.70
4019 4046 3.917300 ACGACCTCTCCTATTCCATCTT 58.083 45.455 0.00 0.00 0.00 2.40
4026 4053 5.454471 CCTCTCCTATTCCATCTTCCTGTTG 60.454 48.000 0.00 0.00 0.00 3.33
4028 4055 5.907662 TCTCCTATTCCATCTTCCTGTTGAT 59.092 40.000 0.00 0.00 0.00 2.57
4031 4058 6.158520 TCCTATTCCATCTTCCTGTTGATTGA 59.841 38.462 0.00 0.00 0.00 2.57
4204 4263 6.449698 GTTATGTCAAATATCTTGCCCCATG 58.550 40.000 0.00 0.00 0.00 3.66
4206 4265 5.122707 TGTCAAATATCTTGCCCCATGTA 57.877 39.130 0.00 0.00 0.00 2.29
4207 4266 5.132502 TGTCAAATATCTTGCCCCATGTAG 58.867 41.667 0.00 0.00 0.00 2.74
4208 4267 5.133221 GTCAAATATCTTGCCCCATGTAGT 58.867 41.667 0.00 0.00 0.00 2.73
4209 4268 5.009010 GTCAAATATCTTGCCCCATGTAGTG 59.991 44.000 0.00 0.00 0.00 2.74
4210 4269 2.638480 TATCTTGCCCCATGTAGTGC 57.362 50.000 0.00 0.00 0.00 4.40
4211 4270 0.106519 ATCTTGCCCCATGTAGTGCC 60.107 55.000 0.00 0.00 0.00 5.01
4212 4271 1.001020 CTTGCCCCATGTAGTGCCA 60.001 57.895 0.00 0.00 0.00 4.92
4213 4272 0.611618 CTTGCCCCATGTAGTGCCAA 60.612 55.000 0.00 0.00 0.00 4.52
4214 4273 0.178950 TTGCCCCATGTAGTGCCAAA 60.179 50.000 0.00 0.00 0.00 3.28
4215 4274 0.897863 TGCCCCATGTAGTGCCAAAC 60.898 55.000 0.00 0.00 0.00 2.93
4216 4275 0.897863 GCCCCATGTAGTGCCAAACA 60.898 55.000 0.00 0.00 0.00 2.83
4217 4276 1.626686 CCCCATGTAGTGCCAAACAA 58.373 50.000 0.00 0.00 0.00 2.83
4218 4277 1.967066 CCCCATGTAGTGCCAAACAAA 59.033 47.619 0.00 0.00 0.00 2.83
4219 4278 2.288763 CCCCATGTAGTGCCAAACAAAC 60.289 50.000 0.00 0.00 0.00 2.93
4220 4279 2.606795 CCCATGTAGTGCCAAACAAACG 60.607 50.000 0.00 0.00 0.00 3.60
4221 4280 2.292016 CCATGTAGTGCCAAACAAACGA 59.708 45.455 0.00 0.00 0.00 3.85
4222 4281 3.243234 CCATGTAGTGCCAAACAAACGAA 60.243 43.478 0.00 0.00 0.00 3.85
4223 4282 4.355437 CATGTAGTGCCAAACAAACGAAA 58.645 39.130 0.00 0.00 0.00 3.46
4224 4283 4.640789 TGTAGTGCCAAACAAACGAAAT 57.359 36.364 0.00 0.00 0.00 2.17
4225 4284 4.602995 TGTAGTGCCAAACAAACGAAATC 58.397 39.130 0.00 0.00 0.00 2.17
4226 4285 4.336993 TGTAGTGCCAAACAAACGAAATCT 59.663 37.500 0.00 0.00 0.00 2.40
4227 4286 3.964909 AGTGCCAAACAAACGAAATCTC 58.035 40.909 0.00 0.00 0.00 2.75
4228 4287 3.049912 GTGCCAAACAAACGAAATCTCC 58.950 45.455 0.00 0.00 0.00 3.71
4229 4288 2.035321 TGCCAAACAAACGAAATCTCCC 59.965 45.455 0.00 0.00 0.00 4.30
4230 4289 2.609491 GCCAAACAAACGAAATCTCCCC 60.609 50.000 0.00 0.00 0.00 4.81
4231 4290 2.890945 CCAAACAAACGAAATCTCCCCT 59.109 45.455 0.00 0.00 0.00 4.79
4232 4291 4.076394 CCAAACAAACGAAATCTCCCCTA 58.924 43.478 0.00 0.00 0.00 3.53
4233 4292 4.705023 CCAAACAAACGAAATCTCCCCTAT 59.295 41.667 0.00 0.00 0.00 2.57
4234 4293 5.185056 CCAAACAAACGAAATCTCCCCTATT 59.815 40.000 0.00 0.00 0.00 1.73
4235 4294 6.295067 CCAAACAAACGAAATCTCCCCTATTT 60.295 38.462 0.00 0.00 0.00 1.40
4236 4295 7.094118 CCAAACAAACGAAATCTCCCCTATTTA 60.094 37.037 0.00 0.00 0.00 1.40
4303 4362 8.845793 TGGCTGGTGATATATATTCCCTTTAAT 58.154 33.333 12.38 0.00 0.00 1.40
4304 4363 9.343539 GGCTGGTGATATATATTCCCTTTAATC 57.656 37.037 12.38 0.00 0.00 1.75
4399 4502 5.007136 GGTCTCTTTCATCAATCGATTCCAC 59.993 44.000 7.92 0.00 0.00 4.02
4415 4518 3.878160 TCCACCTTTTTCCACACAAAC 57.122 42.857 0.00 0.00 0.00 2.93
4508 4616 1.202770 CCGGCCTATCGGGAAATCTTT 60.203 52.381 0.00 0.00 45.78 2.52
4521 4629 3.438360 GAAATCTTTATGCAAGTGCCCG 58.562 45.455 0.00 0.00 41.18 6.13
4534 4642 0.029700 GTGCCCGTAACAACCAACAC 59.970 55.000 0.00 0.00 0.00 3.32
4548 4657 1.402984 CCAACACTCTCGACCTGTAGC 60.403 57.143 0.00 0.00 0.00 3.58
4551 4660 2.408241 ACTCTCGACCTGTAGCCGC 61.408 63.158 0.00 0.00 0.00 6.53
4553 4662 4.554363 CTCGACCTGTAGCCGCCG 62.554 72.222 0.00 0.00 0.00 6.46
4584 4693 4.160252 ACCCATAAATTGATTTGAAGCGCT 59.840 37.500 2.64 2.64 0.00 5.92
4599 4708 2.703416 AGCGCTTGACATCAAATCTCA 58.297 42.857 2.64 0.00 35.15 3.27
4624 4733 1.001487 CTTGCACACATGGCGAGAAAA 60.001 47.619 4.17 0.00 44.01 2.29
4631 4740 2.811431 CACATGGCGAGAAAACCTAACA 59.189 45.455 0.00 0.00 0.00 2.41
4640 4749 5.122396 GCGAGAAAACCTAACATCATTGTCT 59.878 40.000 0.00 0.00 34.06 3.41
4641 4750 6.348540 GCGAGAAAACCTAACATCATTGTCTT 60.349 38.462 0.00 0.00 34.06 3.01
4674 4783 6.182627 TGCATGAATCTATGTCAAAACTCCT 58.817 36.000 0.00 0.00 0.00 3.69
4676 4785 7.177216 TGCATGAATCTATGTCAAAACTCCTTT 59.823 33.333 0.00 0.00 0.00 3.11
4700 4809 5.995282 TGACTATGTTTCAATGGACGAACTT 59.005 36.000 0.00 0.00 0.00 2.66
4791 4900 8.533657 TCCCACGAGAAATAATAAACTCTAACA 58.466 33.333 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.872881 TCAAAAATGTAAGTGGTATTGCGTAA 58.127 30.769 0.00 0.00 0.00 3.18
1 2 7.436430 TCAAAAATGTAAGTGGTATTGCGTA 57.564 32.000 0.00 0.00 0.00 4.42
2 3 6.320494 TCAAAAATGTAAGTGGTATTGCGT 57.680 33.333 0.00 0.00 0.00 5.24
3 4 6.861055 AGTTCAAAAATGTAAGTGGTATTGCG 59.139 34.615 0.00 0.00 0.00 4.85
4 5 9.855021 ATAGTTCAAAAATGTAAGTGGTATTGC 57.145 29.630 0.00 0.00 0.00 3.56
8 9 9.575868 TGGAATAGTTCAAAAATGTAAGTGGTA 57.424 29.630 0.00 0.00 0.00 3.25
9 10 8.472007 TGGAATAGTTCAAAAATGTAAGTGGT 57.528 30.769 0.00 0.00 0.00 4.16
10 11 9.927668 AATGGAATAGTTCAAAAATGTAAGTGG 57.072 29.630 0.00 0.00 0.00 4.00
31 32 6.648879 AATCGACTTTTCCAAAAGAATGGA 57.351 33.333 16.91 9.07 46.39 3.41
32 33 8.810652 TTAAATCGACTTTTCCAAAAGAATGG 57.189 30.769 16.91 4.90 46.39 3.16
210 211 9.349713 GGAAGGGTTTTTAAATTTGAGGATTTT 57.650 29.630 0.00 0.00 31.96 1.82
211 212 8.723365 AGGAAGGGTTTTTAAATTTGAGGATTT 58.277 29.630 0.00 0.00 33.95 2.17
212 213 8.275187 AGGAAGGGTTTTTAAATTTGAGGATT 57.725 30.769 0.00 0.00 0.00 3.01
213 214 7.872061 AGGAAGGGTTTTTAAATTTGAGGAT 57.128 32.000 0.00 0.00 0.00 3.24
214 215 8.228905 TCTAGGAAGGGTTTTTAAATTTGAGGA 58.771 33.333 0.00 0.00 0.00 3.71
215 216 8.417273 TCTAGGAAGGGTTTTTAAATTTGAGG 57.583 34.615 0.00 0.00 0.00 3.86
228 229 9.601810 ACTTATTTTCAAAATCTAGGAAGGGTT 57.398 29.630 0.00 0.00 0.00 4.11
229 230 9.601810 AACTTATTTTCAAAATCTAGGAAGGGT 57.398 29.630 0.00 0.00 0.00 4.34
351 352 9.683069 GTGAACACTTTATTCAAATCAGTGATT 57.317 29.630 12.75 12.75 37.80 2.57
352 353 8.017373 CGTGAACACTTTATTCAAATCAGTGAT 58.983 33.333 16.34 0.00 37.80 3.06
353 354 7.011950 ACGTGAACACTTTATTCAAATCAGTGA 59.988 33.333 16.34 0.00 37.80 3.41
354 355 7.132213 ACGTGAACACTTTATTCAAATCAGTG 58.868 34.615 11.02 11.02 37.80 3.66
355 356 7.259290 ACGTGAACACTTTATTCAAATCAGT 57.741 32.000 3.51 0.00 37.80 3.41
356 357 9.825972 AATACGTGAACACTTTATTCAAATCAG 57.174 29.630 0.00 0.00 37.80 2.90
359 360 8.911662 GCAAATACGTGAACACTTTATTCAAAT 58.088 29.630 0.00 0.00 37.80 2.32
360 361 7.112287 CGCAAATACGTGAACACTTTATTCAAA 59.888 33.333 0.00 0.00 37.80 2.69
361 362 6.575572 CGCAAATACGTGAACACTTTATTCAA 59.424 34.615 0.00 0.00 37.80 2.69
362 363 6.073711 TCGCAAATACGTGAACACTTTATTCA 60.074 34.615 0.00 0.00 33.68 2.57
363 364 6.301108 TCGCAAATACGTGAACACTTTATTC 58.699 36.000 0.00 0.00 0.00 1.75
364 365 6.230849 TCGCAAATACGTGAACACTTTATT 57.769 33.333 0.00 3.88 0.00 1.40
365 366 5.849357 TCGCAAATACGTGAACACTTTAT 57.151 34.783 0.00 0.00 0.00 1.40
366 367 5.654317 TTCGCAAATACGTGAACACTTTA 57.346 34.783 0.00 0.00 30.66 1.85
367 368 4.539509 TTCGCAAATACGTGAACACTTT 57.460 36.364 0.00 0.00 30.66 2.66
368 369 4.742438 ATTCGCAAATACGTGAACACTT 57.258 36.364 0.00 0.00 38.16 3.16
369 370 5.849357 TTATTCGCAAATACGTGAACACT 57.151 34.783 0.00 0.00 38.16 3.55
370 371 6.739100 TGAATTATTCGCAAATACGTGAACAC 59.261 34.615 0.00 0.00 38.16 3.32
371 372 6.832804 TGAATTATTCGCAAATACGTGAACA 58.167 32.000 0.00 0.00 38.16 3.18
372 373 7.892445 ATGAATTATTCGCAAATACGTGAAC 57.108 32.000 0.00 0.00 38.16 3.18
373 374 8.903570 AAATGAATTATTCGCAAATACGTGAA 57.096 26.923 0.00 0.00 39.56 3.18
374 375 9.989869 TTAAATGAATTATTCGCAAATACGTGA 57.010 25.926 0.00 0.00 0.00 4.35
376 377 9.997482 AGTTAAATGAATTATTCGCAAATACGT 57.003 25.926 0.00 0.00 0.00 3.57
383 384 9.607988 TCTTCCTAGTTAAATGAATTATTCGCA 57.392 29.630 0.23 0.00 0.00 5.10
488 489 9.682465 GGATCTGGTAACCTTTAACTTTTATCT 57.318 33.333 0.00 0.00 0.00 1.98
489 490 8.900781 GGGATCTGGTAACCTTTAACTTTTATC 58.099 37.037 0.00 0.00 0.00 1.75
490 491 7.837689 GGGGATCTGGTAACCTTTAACTTTTAT 59.162 37.037 0.00 0.00 0.00 1.40
491 492 7.018851 AGGGGATCTGGTAACCTTTAACTTTTA 59.981 37.037 0.00 0.00 0.00 1.52
492 493 6.014647 GGGGATCTGGTAACCTTTAACTTTT 58.985 40.000 0.00 0.00 0.00 2.27
493 494 5.315109 AGGGGATCTGGTAACCTTTAACTTT 59.685 40.000 0.00 0.00 0.00 2.66
494 495 4.856182 AGGGGATCTGGTAACCTTTAACTT 59.144 41.667 0.00 0.00 0.00 2.66
495 496 4.445564 AGGGGATCTGGTAACCTTTAACT 58.554 43.478 0.00 0.00 0.00 2.24
496 497 4.857130 AGGGGATCTGGTAACCTTTAAC 57.143 45.455 0.00 0.00 0.00 2.01
497 498 4.973211 CCTAGGGGATCTGGTAACCTTTAA 59.027 45.833 0.00 0.00 32.87 1.52
498 499 4.014973 ACCTAGGGGATCTGGTAACCTTTA 60.015 45.833 14.81 0.00 36.25 1.85
499 500 3.246758 ACCTAGGGGATCTGGTAACCTTT 60.247 47.826 14.81 0.00 36.25 3.11
500 501 2.321296 ACCTAGGGGATCTGGTAACCTT 59.679 50.000 14.81 0.00 36.25 3.50
501 502 1.945317 ACCTAGGGGATCTGGTAACCT 59.055 52.381 14.81 0.00 36.25 3.50
502 503 2.047830 CACCTAGGGGATCTGGTAACC 58.952 57.143 14.81 0.00 36.25 2.85
503 504 3.042059 TCACCTAGGGGATCTGGTAAC 57.958 52.381 10.57 0.00 36.25 2.50
504 505 3.587498 CATCACCTAGGGGATCTGGTAA 58.413 50.000 24.42 0.00 36.25 2.85
505 506 2.158158 CCATCACCTAGGGGATCTGGTA 60.158 54.545 24.42 0.00 36.25 3.25
506 507 1.415126 CCATCACCTAGGGGATCTGGT 60.415 57.143 24.42 0.00 36.25 4.00
507 508 1.356124 CCATCACCTAGGGGATCTGG 58.644 60.000 24.42 20.63 36.25 3.86
515 516 1.489230 GTAACCACCCCATCACCTAGG 59.511 57.143 7.41 7.41 0.00 3.02
516 517 2.093128 GTGTAACCACCCCATCACCTAG 60.093 54.545 0.00 0.00 35.44 3.02
517 518 1.910671 GTGTAACCACCCCATCACCTA 59.089 52.381 0.00 0.00 35.44 3.08
518 519 0.696501 GTGTAACCACCCCATCACCT 59.303 55.000 0.00 0.00 35.44 4.00
519 520 3.259592 GTGTAACCACCCCATCACC 57.740 57.895 0.00 0.00 35.44 4.02
531 532 4.513442 TCATCAAGGTATGCTGGTGTAAC 58.487 43.478 0.00 0.00 0.00 2.50
532 533 4.384098 CCTCATCAAGGTATGCTGGTGTAA 60.384 45.833 0.00 0.00 40.67 2.41
533 534 3.134623 CCTCATCAAGGTATGCTGGTGTA 59.865 47.826 0.00 0.00 40.67 2.90
534 535 2.092753 CCTCATCAAGGTATGCTGGTGT 60.093 50.000 0.00 0.00 40.67 4.16
535 536 2.569059 CCTCATCAAGGTATGCTGGTG 58.431 52.381 0.00 0.00 40.67 4.17
536 537 1.492176 CCCTCATCAAGGTATGCTGGT 59.508 52.381 0.00 0.00 44.56 4.00
537 538 1.770658 TCCCTCATCAAGGTATGCTGG 59.229 52.381 0.00 0.00 44.56 4.85
538 539 2.224475 CCTCCCTCATCAAGGTATGCTG 60.224 54.545 0.00 0.00 44.56 4.41
539 540 2.053244 CCTCCCTCATCAAGGTATGCT 58.947 52.381 0.00 0.00 44.56 3.79
540 541 1.771255 ACCTCCCTCATCAAGGTATGC 59.229 52.381 0.00 0.00 44.56 3.14
541 542 2.036475 CGACCTCCCTCATCAAGGTATG 59.964 54.545 0.00 0.00 43.43 2.39
542 543 2.320781 CGACCTCCCTCATCAAGGTAT 58.679 52.381 0.00 0.00 43.43 2.73
543 544 1.776662 CGACCTCCCTCATCAAGGTA 58.223 55.000 0.00 0.00 43.43 3.08
544 545 1.617947 GCGACCTCCCTCATCAAGGT 61.618 60.000 0.00 0.00 46.03 3.50
545 546 1.144936 GCGACCTCCCTCATCAAGG 59.855 63.158 0.00 0.00 45.77 3.61
546 547 0.179089 CAGCGACCTCCCTCATCAAG 60.179 60.000 0.00 0.00 0.00 3.02
547 548 1.617018 CCAGCGACCTCCCTCATCAA 61.617 60.000 0.00 0.00 0.00 2.57
548 549 2.060383 CCAGCGACCTCCCTCATCA 61.060 63.158 0.00 0.00 0.00 3.07
549 550 1.617947 AACCAGCGACCTCCCTCATC 61.618 60.000 0.00 0.00 0.00 2.92
550 551 1.613630 AACCAGCGACCTCCCTCAT 60.614 57.895 0.00 0.00 0.00 2.90
551 552 2.203788 AACCAGCGACCTCCCTCA 60.204 61.111 0.00 0.00 0.00 3.86
552 553 1.827399 TTGAACCAGCGACCTCCCTC 61.827 60.000 0.00 0.00 0.00 4.30
553 554 1.201429 ATTGAACCAGCGACCTCCCT 61.201 55.000 0.00 0.00 0.00 4.20
554 555 0.322546 AATTGAACCAGCGACCTCCC 60.323 55.000 0.00 0.00 0.00 4.30
555 556 1.087501 GAATTGAACCAGCGACCTCC 58.912 55.000 0.00 0.00 0.00 4.30
556 557 1.734465 CTGAATTGAACCAGCGACCTC 59.266 52.381 0.00 0.00 0.00 3.85
557 558 1.611673 CCTGAATTGAACCAGCGACCT 60.612 52.381 0.00 0.00 0.00 3.85
558 559 0.804989 CCTGAATTGAACCAGCGACC 59.195 55.000 0.00 0.00 0.00 4.79
559 560 1.734465 CTCCTGAATTGAACCAGCGAC 59.266 52.381 0.00 0.00 0.00 5.19
560 561 1.945819 GCTCCTGAATTGAACCAGCGA 60.946 52.381 0.00 0.00 0.00 4.93
561 562 0.449388 GCTCCTGAATTGAACCAGCG 59.551 55.000 0.00 0.00 0.00 5.18
562 563 1.471684 CTGCTCCTGAATTGAACCAGC 59.528 52.381 0.00 0.00 0.00 4.85
563 564 1.471684 GCTGCTCCTGAATTGAACCAG 59.528 52.381 0.00 0.00 0.00 4.00
564 565 1.074405 AGCTGCTCCTGAATTGAACCA 59.926 47.619 0.00 0.00 0.00 3.67
565 566 1.742268 GAGCTGCTCCTGAATTGAACC 59.258 52.381 18.80 0.00 0.00 3.62
566 567 1.396301 CGAGCTGCTCCTGAATTGAAC 59.604 52.381 22.97 0.00 0.00 3.18
567 568 1.730501 CGAGCTGCTCCTGAATTGAA 58.269 50.000 22.97 0.00 0.00 2.69
568 569 0.742281 GCGAGCTGCTCCTGAATTGA 60.742 55.000 22.97 0.00 41.73 2.57
569 570 1.720301 GCGAGCTGCTCCTGAATTG 59.280 57.895 22.97 8.86 41.73 2.32
570 571 4.215349 GCGAGCTGCTCCTGAATT 57.785 55.556 22.97 0.00 41.73 2.17
579 580 0.588252 TCAGACAAAAAGCGAGCTGC 59.412 50.000 0.00 0.00 46.98 5.25
580 581 3.549299 AATCAGACAAAAAGCGAGCTG 57.451 42.857 0.00 0.00 0.00 4.24
581 582 6.818644 TCTTATAATCAGACAAAAAGCGAGCT 59.181 34.615 0.00 0.00 0.00 4.09
582 583 6.902417 GTCTTATAATCAGACAAAAAGCGAGC 59.098 38.462 0.00 0.00 40.50 5.03
583 584 7.963981 TGTCTTATAATCAGACAAAAAGCGAG 58.036 34.615 3.71 0.00 46.16 5.03
584 585 7.899178 TGTCTTATAATCAGACAAAAAGCGA 57.101 32.000 3.71 0.00 46.16 4.93
615 616 1.182667 GCCGGCCCATCTAACTTTTT 58.817 50.000 18.11 0.00 0.00 1.94
616 617 0.331616 AGCCGGCCCATCTAACTTTT 59.668 50.000 26.15 0.00 0.00 2.27
617 618 0.107165 GAGCCGGCCCATCTAACTTT 60.107 55.000 26.15 0.00 0.00 2.66
618 619 1.271840 TGAGCCGGCCCATCTAACTT 61.272 55.000 26.15 0.00 0.00 2.66
619 620 1.689233 TGAGCCGGCCCATCTAACT 60.689 57.895 26.15 0.00 0.00 2.24
620 621 1.227674 CTGAGCCGGCCCATCTAAC 60.228 63.158 26.15 5.22 0.00 2.34
621 622 3.106986 GCTGAGCCGGCCCATCTAA 62.107 63.158 26.15 0.00 0.00 2.10
622 623 3.550431 GCTGAGCCGGCCCATCTA 61.550 66.667 26.15 4.57 0.00 1.98
651 652 4.986708 TTGCAAACGGGGGCCTCC 62.987 66.667 13.54 13.54 0.00 4.30
652 653 2.034048 TTTTTGCAAACGGGGGCCTC 62.034 55.000 12.39 0.00 0.00 4.70
653 654 2.066999 TTTTTGCAAACGGGGGCCT 61.067 52.632 12.39 0.00 0.00 5.19
654 655 2.506472 TTTTTGCAAACGGGGGCC 59.494 55.556 12.39 0.00 0.00 5.80
668 669 0.233848 CGCCTGTTACTCGCGTTTTT 59.766 50.000 5.77 0.00 40.99 1.94
669 670 1.857364 CGCCTGTTACTCGCGTTTT 59.143 52.632 5.77 0.00 40.99 2.43
670 671 3.545911 CGCCTGTTACTCGCGTTT 58.454 55.556 5.77 0.00 40.99 3.60
674 675 0.388134 TTCAGACGCCTGTTACTCGC 60.388 55.000 0.00 0.00 41.16 5.03
675 676 1.618861 CTTCAGACGCCTGTTACTCG 58.381 55.000 0.00 0.00 41.16 4.18
676 677 1.351153 GCTTCAGACGCCTGTTACTC 58.649 55.000 0.00 0.00 41.16 2.59
677 678 0.388649 CGCTTCAGACGCCTGTTACT 60.389 55.000 0.00 0.00 41.16 2.24
678 679 2.070861 CGCTTCAGACGCCTGTTAC 58.929 57.895 0.00 0.00 41.16 2.50
679 680 4.571250 CGCTTCAGACGCCTGTTA 57.429 55.556 0.00 0.00 41.16 2.41
686 687 1.590238 CTCTATTTGGCGCTTCAGACG 59.410 52.381 7.64 0.00 0.00 4.18
687 688 2.605366 GACTCTATTTGGCGCTTCAGAC 59.395 50.000 7.64 0.00 0.00 3.51
688 689 2.497675 AGACTCTATTTGGCGCTTCAGA 59.502 45.455 7.64 2.51 0.00 3.27
689 690 2.606725 CAGACTCTATTTGGCGCTTCAG 59.393 50.000 7.64 0.00 0.00 3.02
690 691 2.621338 CAGACTCTATTTGGCGCTTCA 58.379 47.619 7.64 0.00 0.00 3.02
691 692 1.328986 GCAGACTCTATTTGGCGCTTC 59.671 52.381 7.64 0.00 0.00 3.86
692 693 1.373570 GCAGACTCTATTTGGCGCTT 58.626 50.000 7.64 0.00 0.00 4.68
693 694 0.462759 GGCAGACTCTATTTGGCGCT 60.463 55.000 7.64 0.00 0.00 5.92
694 695 2.017752 GGCAGACTCTATTTGGCGC 58.982 57.895 0.00 0.00 0.00 6.53
696 697 0.462759 AGCGGCAGACTCTATTTGGC 60.463 55.000 1.45 0.00 0.00 4.52
697 698 1.293924 CAGCGGCAGACTCTATTTGG 58.706 55.000 1.45 0.00 0.00 3.28
698 699 2.015736 ACAGCGGCAGACTCTATTTG 57.984 50.000 1.45 0.00 0.00 2.32
699 700 2.479730 CGTACAGCGGCAGACTCTATTT 60.480 50.000 1.45 0.00 36.85 1.40
700 701 1.065701 CGTACAGCGGCAGACTCTATT 59.934 52.381 1.45 0.00 36.85 1.73
701 702 0.663688 CGTACAGCGGCAGACTCTAT 59.336 55.000 1.45 0.00 36.85 1.98
702 703 1.989966 GCGTACAGCGGCAGACTCTA 61.990 60.000 1.45 0.00 41.69 2.43
703 704 2.878429 CGTACAGCGGCAGACTCT 59.122 61.111 1.45 0.00 36.85 3.24
704 705 2.881352 GCGTACAGCGGCAGACTC 60.881 66.667 1.45 0.00 41.69 3.36
721 722 3.589654 TTCCTGAACGAGCAGCCCG 62.590 63.158 0.00 0.00 34.56 6.13
722 723 1.302511 TTTCCTGAACGAGCAGCCC 60.303 57.895 0.00 0.00 34.56 5.19
723 724 0.603975 AGTTTCCTGAACGAGCAGCC 60.604 55.000 0.00 0.00 43.20 4.85
724 725 0.514691 CAGTTTCCTGAACGAGCAGC 59.485 55.000 0.00 0.00 43.20 5.25
725 726 0.514691 GCAGTTTCCTGAACGAGCAG 59.485 55.000 0.00 0.00 43.20 4.24
726 727 1.221466 CGCAGTTTCCTGAACGAGCA 61.221 55.000 0.00 0.00 43.20 4.26
727 728 1.493311 CGCAGTTTCCTGAACGAGC 59.507 57.895 0.00 0.00 43.20 5.03
728 729 1.493311 GCGCAGTTTCCTGAACGAG 59.507 57.895 0.30 0.00 43.20 4.18
729 730 2.307309 CGCGCAGTTTCCTGAACGA 61.307 57.895 8.75 0.00 43.20 3.85
730 731 2.170985 CGCGCAGTTTCCTGAACG 59.829 61.111 8.75 0.00 43.20 3.95
731 732 1.959226 TCCGCGCAGTTTCCTGAAC 60.959 57.895 8.75 0.00 41.50 3.18
732 733 1.959226 GTCCGCGCAGTTTCCTGAA 60.959 57.895 8.75 0.00 41.50 3.02
733 734 2.357034 GTCCGCGCAGTTTCCTGA 60.357 61.111 8.75 0.00 41.50 3.86
734 735 3.423154 GGTCCGCGCAGTTTCCTG 61.423 66.667 8.75 0.00 41.91 3.86
735 736 2.951475 TTTGGTCCGCGCAGTTTCCT 62.951 55.000 8.75 0.00 0.00 3.36
736 737 2.548295 TTTGGTCCGCGCAGTTTCC 61.548 57.895 8.75 2.54 0.00 3.13
737 738 1.370051 GTTTGGTCCGCGCAGTTTC 60.370 57.895 8.75 0.00 0.00 2.78
738 739 2.719354 GTTTGGTCCGCGCAGTTT 59.281 55.556 8.75 0.00 0.00 2.66
739 740 3.284449 GGTTTGGTCCGCGCAGTT 61.284 61.111 8.75 0.00 0.00 3.16
756 757 4.900259 AGGGCCGGATACTGGGGG 62.900 72.222 5.05 0.00 0.00 5.40
757 758 3.242291 GAGGGCCGGATACTGGGG 61.242 72.222 5.05 0.00 0.00 4.96
758 759 3.242291 GGAGGGCCGGATACTGGG 61.242 72.222 5.05 0.00 0.00 4.45
759 760 3.242291 GGGAGGGCCGGATACTGG 61.242 72.222 5.05 0.00 33.83 4.00
760 761 2.044806 CTTGGGAGGGCCGGATACTG 62.045 65.000 5.05 0.00 33.83 2.74
761 762 1.766461 CTTGGGAGGGCCGGATACT 60.766 63.158 5.05 0.00 33.83 2.12
762 763 1.632965 AACTTGGGAGGGCCGGATAC 61.633 60.000 5.05 0.00 33.83 2.24
763 764 0.917333 AAACTTGGGAGGGCCGGATA 60.917 55.000 5.05 0.00 33.83 2.59
764 765 0.917333 TAAACTTGGGAGGGCCGGAT 60.917 55.000 5.05 0.00 33.83 4.18
765 766 1.539372 TAAACTTGGGAGGGCCGGA 60.539 57.895 5.05 0.00 33.83 5.14
766 767 1.378119 GTAAACTTGGGAGGGCCGG 60.378 63.158 0.00 0.00 33.83 6.13
786 787 1.523938 GCTTAGGACCACATCGGCC 60.524 63.158 0.00 0.00 39.03 6.13
790 791 3.206964 GCCTAAAGCTTAGGACCACATC 58.793 50.000 19.94 3.38 38.99 3.06
833 834 5.132144 GTGGGATTGGGTCTTAAGATAGGAA 59.868 44.000 8.75 0.49 0.00 3.36
834 835 4.658901 GTGGGATTGGGTCTTAAGATAGGA 59.341 45.833 8.75 0.00 0.00 2.94
835 836 4.412199 TGTGGGATTGGGTCTTAAGATAGG 59.588 45.833 8.75 0.00 0.00 2.57
836 837 5.366768 TCTGTGGGATTGGGTCTTAAGATAG 59.633 44.000 8.75 0.00 0.00 2.08
838 839 4.111577 TCTGTGGGATTGGGTCTTAAGAT 58.888 43.478 8.75 0.00 0.00 2.40
840 841 3.519510 TCTCTGTGGGATTGGGTCTTAAG 59.480 47.826 0.00 0.00 0.00 1.85
841 842 3.526899 TCTCTGTGGGATTGGGTCTTAA 58.473 45.455 0.00 0.00 0.00 1.85
843 844 2.044793 TCTCTGTGGGATTGGGTCTT 57.955 50.000 0.00 0.00 0.00 3.01
845 846 2.879103 TTTCTCTGTGGGATTGGGTC 57.121 50.000 0.00 0.00 0.00 4.46
847 848 4.096382 CGTATTTTTCTCTGTGGGATTGGG 59.904 45.833 0.00 0.00 0.00 4.12
848 849 4.941263 TCGTATTTTTCTCTGTGGGATTGG 59.059 41.667 0.00 0.00 0.00 3.16
849 850 5.065218 CCTCGTATTTTTCTCTGTGGGATTG 59.935 44.000 0.00 0.00 0.00 2.67
850 851 5.186198 CCTCGTATTTTTCTCTGTGGGATT 58.814 41.667 0.00 0.00 0.00 3.01
851 852 4.225267 ACCTCGTATTTTTCTCTGTGGGAT 59.775 41.667 0.00 0.00 0.00 3.85
852 853 3.581332 ACCTCGTATTTTTCTCTGTGGGA 59.419 43.478 0.00 0.00 0.00 4.37
853 854 3.939066 ACCTCGTATTTTTCTCTGTGGG 58.061 45.455 0.00 0.00 0.00 4.61
854 855 5.238583 AGAACCTCGTATTTTTCTCTGTGG 58.761 41.667 0.00 0.00 0.00 4.17
855 856 6.647067 AGAAGAACCTCGTATTTTTCTCTGTG 59.353 38.462 0.00 0.00 0.00 3.66
856 857 6.760291 AGAAGAACCTCGTATTTTTCTCTGT 58.240 36.000 0.00 0.00 0.00 3.41
857 858 6.868864 TGAGAAGAACCTCGTATTTTTCTCTG 59.131 38.462 19.56 0.00 39.63 3.35
858 859 6.869388 GTGAGAAGAACCTCGTATTTTTCTCT 59.131 38.462 19.56 7.85 39.63 3.10
859 860 6.183359 CGTGAGAAGAACCTCGTATTTTTCTC 60.183 42.308 15.64 15.64 39.45 2.87
867 868 1.538512 CCACGTGAGAAGAACCTCGTA 59.461 52.381 19.30 0.00 35.99 3.43
872 873 1.671379 GGCCCACGTGAGAAGAACC 60.671 63.158 19.30 3.47 0.00 3.62
889 890 0.902531 TCTTAAGAACTCGGCCCTGG 59.097 55.000 1.68 0.00 0.00 4.45
1441 1450 2.082231 CTCTCCACAATTGCACTCAGG 58.918 52.381 5.05 0.00 0.00 3.86
1598 1607 2.417651 CCAAATGCTGACATTGCCGATT 60.418 45.455 0.00 0.00 45.90 3.34
1601 1610 1.079875 GCCAAATGCTGACATTGCCG 61.080 55.000 0.00 0.00 45.90 5.69
1652 1661 2.762535 TTCTGCCTACACCTAGCAAC 57.237 50.000 0.00 0.00 35.79 4.17
1698 1707 8.088981 AGACTAATTCTGTACGTGAAACTTGAT 58.911 33.333 0.00 0.00 31.12 2.57
1711 1720 5.722021 TGCACACTGAGACTAATTCTGTA 57.278 39.130 0.00 0.00 33.22 2.74
1731 1740 1.674322 ACGTAGTTGCCCACCATGC 60.674 57.895 0.00 0.00 37.78 4.06
1766 1775 4.771577 TCATCATGGTTGTAAATGCAGGTT 59.228 37.500 0.00 0.00 0.00 3.50
1828 1837 3.826729 ACTGGCCACTTTTACATTTCTCC 59.173 43.478 0.00 0.00 0.00 3.71
1880 1889 6.987992 ACTACTGATCTAAGAGACTAAGACCG 59.012 42.308 0.00 0.00 0.00 4.79
1887 1896 5.265191 TGCCAACTACTGATCTAAGAGACT 58.735 41.667 0.00 0.00 0.00 3.24
1888 1897 5.584253 TGCCAACTACTGATCTAAGAGAC 57.416 43.478 0.00 0.00 0.00 3.36
1889 1898 8.363390 CAATATGCCAACTACTGATCTAAGAGA 58.637 37.037 0.00 0.00 0.00 3.10
1890 1899 7.117523 GCAATATGCCAACTACTGATCTAAGAG 59.882 40.741 0.00 0.00 37.42 2.85
1891 1900 6.931281 GCAATATGCCAACTACTGATCTAAGA 59.069 38.462 0.00 0.00 37.42 2.10
1892 1901 6.933521 AGCAATATGCCAACTACTGATCTAAG 59.066 38.462 0.00 0.00 46.52 2.18
1893 1902 6.830912 AGCAATATGCCAACTACTGATCTAA 58.169 36.000 0.00 0.00 46.52 2.10
1894 1903 6.425210 AGCAATATGCCAACTACTGATCTA 57.575 37.500 0.00 0.00 46.52 1.98
1917 1926 4.202040 CCAAACAGCTCAACATCTGTCAAA 60.202 41.667 0.00 0.00 42.19 2.69
2055 2064 8.668510 ATCAGTTAAACATCCACATCAGATAC 57.331 34.615 0.00 0.00 0.00 2.24
2074 2083 6.426328 GTGAAGAAGTGAGACATCAATCAGTT 59.574 38.462 0.00 0.00 40.82 3.16
2327 2336 6.290748 CGCGGATTTAGTACAACTTTAGTACG 60.291 42.308 0.00 0.00 44.92 3.67
2482 2492 4.889832 AATCCTACCGACTAGTACAACG 57.110 45.455 0.00 0.00 0.00 4.10
2491 2501 8.701895 TGATTAGTCAAATTAATCCTACCGACT 58.298 33.333 0.00 0.00 36.93 4.18
2492 2502 8.762426 GTGATTAGTCAAATTAATCCTACCGAC 58.238 37.037 0.00 0.00 36.93 4.79
2570 2580 5.163784 CCAGCAGTTTGATCACACAATCTAG 60.164 44.000 14.19 0.00 31.39 2.43
2664 2674 8.616076 AGTTTCTATCTTGCGATTTCCAAATAG 58.384 33.333 0.00 0.00 0.00 1.73
3044 3054 3.637273 GTCCCAACGGTGGCTCCT 61.637 66.667 16.13 0.00 44.46 3.69
3518 3528 1.809133 TACCCTGGACAAGTTCACCA 58.191 50.000 0.00 0.00 0.00 4.17
3788 3798 1.612676 TCCGACGAAGAACCTTCTCA 58.387 50.000 0.00 0.00 36.28 3.27
3841 3851 6.316390 ACAAACAGAGTACAACAGAAGGAAAG 59.684 38.462 0.00 0.00 0.00 2.62
4019 4046 6.873076 GGTGCAAAAATATTCAATCAACAGGA 59.127 34.615 0.00 0.00 0.00 3.86
4028 4055 9.823647 TTCTTTACTTGGTGCAAAAATATTCAA 57.176 25.926 0.00 0.00 0.00 2.69
4031 4058 9.051679 GGTTTCTTTACTTGGTGCAAAAATATT 57.948 29.630 0.00 0.00 0.00 1.28
4172 4201 6.834959 AGATATTTGACATAACGTGCTCAG 57.165 37.500 0.00 0.00 0.00 3.35
4204 4263 4.855531 AGATTTCGTTTGTTTGGCACTAC 58.144 39.130 0.00 0.00 0.00 2.73
4206 4265 3.243401 GGAGATTTCGTTTGTTTGGCACT 60.243 43.478 0.00 0.00 0.00 4.40
4207 4266 3.049912 GGAGATTTCGTTTGTTTGGCAC 58.950 45.455 0.00 0.00 0.00 5.01
4208 4267 2.035321 GGGAGATTTCGTTTGTTTGGCA 59.965 45.455 0.00 0.00 0.00 4.92
4209 4268 2.609491 GGGGAGATTTCGTTTGTTTGGC 60.609 50.000 0.00 0.00 0.00 4.52
4210 4269 2.890945 AGGGGAGATTTCGTTTGTTTGG 59.109 45.455 0.00 0.00 0.00 3.28
4211 4270 5.897377 ATAGGGGAGATTTCGTTTGTTTG 57.103 39.130 0.00 0.00 0.00 2.93
4212 4271 6.911250 AAATAGGGGAGATTTCGTTTGTTT 57.089 33.333 0.00 0.00 0.00 2.83
4213 4272 8.589701 ATTAAATAGGGGAGATTTCGTTTGTT 57.410 30.769 0.00 0.00 0.00 2.83
4214 4273 8.589701 AATTAAATAGGGGAGATTTCGTTTGT 57.410 30.769 0.00 0.00 0.00 2.83
4215 4274 9.869757 AAAATTAAATAGGGGAGATTTCGTTTG 57.130 29.630 0.00 0.00 0.00 2.93
4217 4276 9.250246 TGAAAATTAAATAGGGGAGATTTCGTT 57.750 29.630 0.00 0.00 0.00 3.85
4218 4277 8.817092 TGAAAATTAAATAGGGGAGATTTCGT 57.183 30.769 0.00 0.00 0.00 3.85
4219 4278 9.120538 TCTGAAAATTAAATAGGGGAGATTTCG 57.879 33.333 0.00 0.00 0.00 3.46
4303 4362 0.106708 AAGTTGCACAAGAGAGCGGA 59.893 50.000 0.00 0.00 33.73 5.54
4304 4363 0.236711 CAAGTTGCACAAGAGAGCGG 59.763 55.000 0.00 0.00 33.73 5.52
4399 4502 4.432712 CCTTCTGTTTGTGTGGAAAAAGG 58.567 43.478 0.00 0.00 0.00 3.11
4415 4518 3.622163 GTGAGAGAATGATGTGCCTTCTG 59.378 47.826 0.00 0.00 29.64 3.02
4508 4616 1.807742 GTTGTTACGGGCACTTGCATA 59.192 47.619 3.15 0.00 44.36 3.14
4521 4629 2.798847 GGTCGAGAGTGTTGGTTGTTAC 59.201 50.000 0.00 0.00 0.00 2.50
4551 4660 1.703411 ATTTATGGGTCCAATGGCGG 58.297 50.000 0.00 0.00 0.00 6.13
4553 4662 4.961438 ATCAATTTATGGGTCCAATGGC 57.039 40.909 0.00 0.00 0.00 4.40
4560 4669 4.504097 GCGCTTCAAATCAATTTATGGGTC 59.496 41.667 0.00 0.00 0.00 4.46
4584 4693 6.016108 TGCAAGACAATGAGATTTGATGTCAA 60.016 34.615 6.94 0.00 42.12 3.18
4599 4708 0.241749 CGCCATGTGTGCAAGACAAT 59.758 50.000 4.04 0.00 46.02 2.71
4640 4749 8.260114 TGACATAGATTCATGCAGTCTTCTTAA 58.740 33.333 0.00 0.00 0.00 1.85
4641 4750 7.785033 TGACATAGATTCATGCAGTCTTCTTA 58.215 34.615 0.00 0.00 0.00 2.10
4674 4783 6.485313 AGTTCGTCCATTGAAACATAGTCAAA 59.515 34.615 0.00 0.00 38.44 2.69
4676 4785 5.547465 AGTTCGTCCATTGAAACATAGTCA 58.453 37.500 0.00 0.00 0.00 3.41
4686 4795 2.028112 CCTCCTCAAGTTCGTCCATTGA 60.028 50.000 0.00 0.00 0.00 2.57
4700 4809 2.123251 GGGCTCCGATCCTCCTCA 60.123 66.667 0.00 0.00 0.00 3.86
4727 4836 1.442769 GTGGCGCTTCATCTTCAAGA 58.557 50.000 7.64 0.00 0.00 3.02
4754 4863 3.066190 CGTGGGAGCGGTGAGGTA 61.066 66.667 0.00 0.00 0.00 3.08
4791 4900 4.564940 CTCGGTTCGGCTAGTAGTTTAT 57.435 45.455 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.