Multiple sequence alignment - TraesCS7B01G158500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G158500 chr7B 100.000 6826 0 0 1 6826 214069890 214076715 0.000000e+00 12606.0
1 TraesCS7B01G158500 chr7B 92.245 245 17 2 6583 6826 602082545 602082788 5.070000e-91 346.0
2 TraesCS7B01G158500 chr7D 96.460 3418 101 11 2741 6152 237412850 237416253 0.000000e+00 5624.0
3 TraesCS7B01G158500 chr7D 92.980 2664 96 33 1 2605 237409696 237412327 0.000000e+00 3799.0
4 TraesCS7B01G158500 chr7D 91.525 531 24 9 6091 6603 237417990 237418517 0.000000e+00 712.0
5 TraesCS7B01G158500 chr7D 92.517 294 19 2 6152 6443 237416295 237416587 1.060000e-112 418.0
6 TraesCS7B01G158500 chr7D 95.238 231 11 0 6596 6826 536118821 536119051 3.890000e-97 366.0
7 TraesCS7B01G158500 chr7D 96.552 145 5 0 2601 2745 237412433 237412577 2.460000e-59 241.0
8 TraesCS7B01G158500 chr7A 90.962 2578 97 49 1 2502 252714625 252717142 0.000000e+00 3345.0
9 TraesCS7B01G158500 chr7A 96.131 1344 45 5 2602 3943 252717281 252718619 0.000000e+00 2187.0
10 TraesCS7B01G158500 chr7A 92.879 1278 43 15 5020 6292 252719907 252721141 0.000000e+00 1812.0
11 TraesCS7B01G158500 chr7A 94.604 593 23 4 3928 4518 252718678 252719263 0.000000e+00 909.0
12 TraesCS7B01G158500 chr7A 97.162 458 13 0 4523 4980 252719454 252719911 0.000000e+00 774.0
13 TraesCS7B01G158500 chr7A 100.000 72 0 0 2534 2605 252717143 252717214 4.290000e-27 134.0
14 TraesCS7B01G158500 chr5B 95.238 231 11 0 6596 6826 674376472 674376702 3.890000e-97 366.0
15 TraesCS7B01G158500 chr5B 94.372 231 13 0 6596 6826 698451671 698451441 8.420000e-94 355.0
16 TraesCS7B01G158500 chr5B 89.595 173 18 0 1284 1456 471402025 471402197 3.200000e-53 220.0
17 TraesCS7B01G158500 chr5B 87.912 91 8 2 4977 5067 585752797 585752884 3.370000e-18 104.0
18 TraesCS7B01G158500 chr2A 94.850 233 12 0 6594 6826 155766467 155766699 1.400000e-96 364.0
19 TraesCS7B01G158500 chr2A 82.828 99 15 2 1358 1455 670962135 670962038 3.390000e-13 87.9
20 TraesCS7B01G158500 chr6A 94.372 231 13 0 6596 6826 33232197 33232427 8.420000e-94 355.0
21 TraesCS7B01G158500 chr5A 94.397 232 12 1 6596 6826 139481191 139481422 8.420000e-94 355.0
22 TraesCS7B01G158500 chr5A 90.173 173 17 0 1284 1456 494570467 494570639 6.890000e-55 226.0
23 TraesCS7B01G158500 chr5A 89.247 93 7 2 4973 5065 597290330 597290419 5.600000e-21 113.0
24 TraesCS7B01G158500 chr4A 93.966 232 13 1 6596 6826 729869120 729868889 3.920000e-92 350.0
25 TraesCS7B01G158500 chr1B 93.249 237 15 1 6591 6826 357414901 357414665 1.410000e-91 348.0
26 TraesCS7B01G158500 chr5D 89.595 173 18 0 1284 1456 391373589 391373761 3.200000e-53 220.0
27 TraesCS7B01G158500 chr5D 89.474 95 7 2 4973 5067 478164173 478164264 4.330000e-22 117.0
28 TraesCS7B01G158500 chr3B 84.167 120 9 9 4952 5067 181288781 181288894 2.600000e-19 108.0
29 TraesCS7B01G158500 chr3B 87.952 83 7 2 4980 5062 405231281 405231360 2.030000e-15 95.3
30 TraesCS7B01G158500 chr3D 88.298 94 4 6 4976 5067 126949041 126949129 9.360000e-19 106.0
31 TraesCS7B01G158500 chr3A 87.778 90 4 6 4980 5067 137579559 137579643 1.570000e-16 99.0
32 TraesCS7B01G158500 chr1D 89.333 75 5 2 4980 5054 17195804 17195733 2.620000e-14 91.6
33 TraesCS7B01G158500 chr2B 83.000 100 15 2 1358 1456 260767722 260767624 9.430000e-14 89.8
34 TraesCS7B01G158500 chr2B 82.828 99 15 2 1358 1455 621968165 621968068 3.390000e-13 87.9
35 TraesCS7B01G158500 chr2D 82.353 102 16 2 1355 1455 525513039 525513139 3.390000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G158500 chr7B 214069890 214076715 6825 False 12606.000000 12606 100.000000 1 6826 1 chr7B.!!$F1 6825
1 TraesCS7B01G158500 chr7D 237409696 237418517 8821 False 2158.800000 5624 94.006800 1 6603 5 chr7D.!!$F2 6602
2 TraesCS7B01G158500 chr7A 252714625 252721141 6516 False 1526.833333 3345 95.289667 1 6292 6 chr7A.!!$F1 6291

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 965 0.110869 AGCTACTAGGCCTACCGGAG 59.889 60.000 9.46 7.69 42.76 4.63 F
928 967 0.110869 CTACTAGGCCTACCGGAGCT 59.889 60.000 9.46 0.00 42.76 4.09 F
2159 2239 0.466007 TCGATGATAACCCGGACGGA 60.466 55.000 13.13 0.00 37.50 4.69 F
2161 2241 0.748450 GATGATAACCCGGACGGACA 59.252 55.000 13.13 0.00 37.50 4.02 F
3396 3894 1.009829 GGCTGCTAATGTGTTCCTCG 58.990 55.000 0.00 0.00 0.00 4.63 F
3538 4036 3.313526 GCGTCCTTCTAGACATACGGTTA 59.686 47.826 17.01 0.00 36.52 2.85 F
5411 6181 0.106769 TTGAGCCTTCAGTGTGCCAA 60.107 50.000 0.00 0.00 34.15 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 2239 0.385751 CATATCAGGCGTCCGTCTGT 59.614 55.000 19.42 10.46 46.84 3.41 R
2368 2472 0.393808 TTTGGGAGTTAGCATCGCCC 60.394 55.000 7.44 7.44 43.59 6.13 R
3970 4549 0.330941 TAATGCTGGGGTGTCATGCA 59.669 50.000 0.00 0.00 38.05 3.96 R
4057 4636 4.202020 GGGATTTAAGAAAACGAGGATGGC 60.202 45.833 0.00 0.00 0.00 4.40 R
4637 5403 3.751175 GCAACATGAAGTAACAGGCTACA 59.249 43.478 0.00 0.00 0.00 2.74 R
5486 6256 0.678395 CACAGTCTGAGTCCAGCACT 59.322 55.000 6.91 0.00 40.20 4.40 R
6663 9252 0.036388 AAGGATAGGGTGTGCGTGTG 60.036 55.000 0.00 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.981114 GCCCACAATGTATTTTTATTTATAGCT 57.019 29.630 0.00 0.00 0.00 3.32
100 101 1.339631 TGGTCGGCCTGATTAGGTTTG 60.340 52.381 7.97 0.00 46.41 2.93
287 303 2.170187 ACGATCTCTCCCGTGTACTACT 59.830 50.000 0.00 0.00 37.64 2.57
288 304 2.801679 CGATCTCTCCCGTGTACTACTC 59.198 54.545 0.00 0.00 0.00 2.59
289 305 2.706339 TCTCTCCCGTGTACTACTCC 57.294 55.000 0.00 0.00 0.00 3.85
300 316 5.986135 CCGTGTACTACTCCTACGTACTAAT 59.014 44.000 0.00 0.00 35.67 1.73
356 372 9.965824 AAGAAATAAATAAAGGGCGATACAATG 57.034 29.630 0.00 0.00 0.00 2.82
362 378 2.097110 AGGGCGATACAATGGTAGGA 57.903 50.000 0.00 0.00 31.88 2.94
363 379 1.971357 AGGGCGATACAATGGTAGGAG 59.029 52.381 0.00 0.00 31.88 3.69
364 380 1.692519 GGGCGATACAATGGTAGGAGT 59.307 52.381 0.00 0.00 31.88 3.85
365 381 2.895404 GGGCGATACAATGGTAGGAGTA 59.105 50.000 0.00 0.00 31.88 2.59
366 382 3.056749 GGGCGATACAATGGTAGGAGTAG 60.057 52.174 0.00 0.00 31.88 2.57
368 384 4.763793 GGCGATACAATGGTAGGAGTAGTA 59.236 45.833 0.00 0.00 31.88 1.82
369 385 5.106237 GGCGATACAATGGTAGGAGTAGTAG 60.106 48.000 0.00 0.00 31.88 2.57
370 386 5.619533 GCGATACAATGGTAGGAGTAGTAGC 60.620 48.000 0.00 0.00 31.88 3.58
371 387 5.706369 CGATACAATGGTAGGAGTAGTAGCT 59.294 44.000 0.00 0.00 31.88 3.32
377 394 4.021916 TGGTAGGAGTAGTAGCTCAAACC 58.978 47.826 0.00 0.00 39.88 3.27
532 561 5.018539 TGCAAGTACTTGTACTGACAACT 57.981 39.130 30.90 0.00 40.72 3.16
590 619 2.363795 CGTGCTACCCTCCCTGGA 60.364 66.667 0.00 0.00 38.35 3.86
592 621 1.612442 GTGCTACCCTCCCTGGACA 60.612 63.158 0.00 0.00 38.35 4.02
846 883 3.288308 AAGCTCCAGACAGCGACCG 62.288 63.158 0.00 0.00 44.82 4.79
925 964 1.350351 CTAGCTACTAGGCCTACCGGA 59.650 57.143 9.46 0.00 42.76 5.14
926 965 0.110869 AGCTACTAGGCCTACCGGAG 59.889 60.000 9.46 7.69 42.76 4.63
927 966 1.525718 GCTACTAGGCCTACCGGAGC 61.526 65.000 17.96 17.96 42.76 4.70
928 967 0.110869 CTACTAGGCCTACCGGAGCT 59.889 60.000 9.46 0.00 42.76 4.09
929 968 1.350351 CTACTAGGCCTACCGGAGCTA 59.650 57.143 9.46 2.16 42.76 3.32
1055 1104 1.228894 ACCTCACCGAGCTGGAGAA 60.229 57.895 8.91 0.00 42.00 2.87
1493 1557 4.870123 TTCCAACCAAGTACGCTACTTA 57.130 40.909 9.19 0.00 46.66 2.24
1518 1584 8.956617 AAATCAAATCGTAGCTCTTCTTTTTC 57.043 30.769 0.00 0.00 0.00 2.29
1522 1588 8.621286 TCAAATCGTAGCTCTTCTTTTTCTTTT 58.379 29.630 0.00 0.00 0.00 2.27
1523 1589 9.237846 CAAATCGTAGCTCTTCTTTTTCTTTTT 57.762 29.630 0.00 0.00 0.00 1.94
1549 1615 4.557496 CGTATCATTCTCTTCGCTCATCCA 60.557 45.833 0.00 0.00 0.00 3.41
1570 1637 3.475566 TTCCTTCATCGTCCATCCATC 57.524 47.619 0.00 0.00 0.00 3.51
1585 1656 7.120138 CGTCCATCCATCAATCAATGATCAATA 59.880 37.037 0.00 0.00 45.91 1.90
1589 1660 8.793592 CATCCATCAATCAATGATCAATACACT 58.206 33.333 0.00 0.00 45.91 3.55
1595 1666 7.438160 TCAATCAATGATCAATACACTACCGTC 59.562 37.037 0.00 0.00 31.50 4.79
1605 1676 8.861033 TCAATACACTACCGTCACATTATTAC 57.139 34.615 0.00 0.00 0.00 1.89
1606 1677 8.689061 TCAATACACTACCGTCACATTATTACT 58.311 33.333 0.00 0.00 0.00 2.24
1607 1678 9.955208 CAATACACTACCGTCACATTATTACTA 57.045 33.333 0.00 0.00 0.00 1.82
1781 1852 5.898630 TTATTGCAACGCTTTTTCTTTCC 57.101 34.783 0.00 0.00 0.00 3.13
1783 1854 1.133407 TGCAACGCTTTTTCTTTCCGT 59.867 42.857 0.00 0.00 0.00 4.69
1784 1855 2.190161 GCAACGCTTTTTCTTTCCGTT 58.810 42.857 0.00 0.00 42.09 4.44
1785 1856 2.601314 GCAACGCTTTTTCTTTCCGTTT 59.399 40.909 0.00 0.00 39.74 3.60
1811 1886 1.818060 TCCTACTACCGCTTTTACGCA 59.182 47.619 0.00 0.00 0.00 5.24
1892 1970 1.449246 GCACTGCTCTGAATCGCCT 60.449 57.895 0.00 0.00 0.00 5.52
2046 2124 6.320171 CCTACTGAATCTGTTTGATTTGCAG 58.680 40.000 0.00 0.00 44.70 4.41
2053 2131 3.625313 TCTGTTTGATTTGCAGTTGACGA 59.375 39.130 0.00 0.00 0.00 4.20
2076 2154 7.148689 ACGAGTTAAATCTGTTCCGTGTTAATC 60.149 37.037 0.96 0.00 0.00 1.75
2159 2239 0.466007 TCGATGATAACCCGGACGGA 60.466 55.000 13.13 0.00 37.50 4.69
2161 2241 0.748450 GATGATAACCCGGACGGACA 59.252 55.000 13.13 0.00 37.50 4.02
2213 2314 4.240096 CTCCTTTTCCATGTGCATTGTTC 58.760 43.478 0.00 0.00 0.00 3.18
2368 2472 3.225940 AGCCCTCTGTTTCAAAGGAAAG 58.774 45.455 0.00 0.00 43.35 2.62
2448 2552 2.825205 GCAAAATGCAGTGTGGACTTT 58.175 42.857 6.44 0.00 44.26 2.66
2503 2610 5.837770 TTCTGTACGATATAGGAGGAGGA 57.162 43.478 0.00 0.00 0.00 3.71
2688 2905 7.860584 AGAAAAATGAGATCTCTAGGCTCTTT 58.139 34.615 22.95 12.07 0.00 2.52
2733 2950 2.439507 GACTTCATGGGAGCCCTTATCA 59.560 50.000 7.16 0.00 36.94 2.15
2777 3271 6.849588 AAACAATTTCTTGAATGTGAAGGC 57.150 33.333 0.00 0.00 36.20 4.35
2922 3416 9.731819 GATAATATCTCAAACGTTAGTGTCAGA 57.268 33.333 0.00 0.00 0.00 3.27
3035 3529 4.092116 AGGATAGCTTCCCTGTATTTGC 57.908 45.455 5.86 0.00 46.81 3.68
3208 3706 1.645710 ACTCGGAACCTGAACCATCT 58.354 50.000 0.00 0.00 0.00 2.90
3330 3828 8.687292 TCTCATTTTAATCTTGCTGAGCATAT 57.313 30.769 8.44 2.04 38.76 1.78
3348 3846 5.784390 AGCATATCAGGTGATTCTATGGACT 59.216 40.000 0.00 0.00 36.05 3.85
3396 3894 1.009829 GGCTGCTAATGTGTTCCTCG 58.990 55.000 0.00 0.00 0.00 4.63
3533 4031 4.096682 AGACTTGCGTCCTTCTAGACATAC 59.903 45.833 0.00 0.00 41.16 2.39
3538 4036 3.313526 GCGTCCTTCTAGACATACGGTTA 59.686 47.826 17.01 0.00 36.52 2.85
3571 4069 4.640771 ATACTGTGGTCCATGTTCAACT 57.359 40.909 0.00 0.00 0.00 3.16
3698 4196 3.908103 AGTGGTCCCTTTGTGTACTGTAT 59.092 43.478 0.00 0.00 0.00 2.29
3950 4529 9.455847 CATCCTATTTAAAATCTTAGTTGCTGC 57.544 33.333 0.00 0.00 0.00 5.25
4004 4583 3.433274 CAGCATTACAGAAAGCGTCAAGA 59.567 43.478 0.00 0.00 0.00 3.02
4022 4601 7.063456 CGTCAAGAATAACAGTGTGTTGTTAG 58.937 38.462 0.00 0.00 44.23 2.34
4105 4684 6.933521 CCTTCAGATACTTGGGAGTTGATATG 59.066 42.308 0.00 0.00 37.33 1.78
4151 4730 8.522830 CAGGAAAATTCTTGAGGTATTGCTTAA 58.477 33.333 0.00 0.00 36.49 1.85
4281 4860 6.097270 AGCATTGCATTAGCTTAATTTCCTCA 59.903 34.615 11.91 0.00 42.74 3.86
4474 5054 7.809331 GTGATGAATTCTGCAAGTTTTATGACA 59.191 33.333 7.05 0.00 33.76 3.58
4526 5292 6.649141 TGCTCTATATTTTAACAGCCCATACG 59.351 38.462 0.00 0.00 0.00 3.06
4540 5306 5.241506 CAGCCCATACGTGATTGGAAATATT 59.758 40.000 13.69 0.00 34.81 1.28
4637 5403 1.074951 GCAGCTTGTAACCCACCCT 59.925 57.895 0.00 0.00 0.00 4.34
4666 5432 5.984926 CCTGTTACTTCATGTTGCACATTTT 59.015 36.000 0.00 0.00 36.53 1.82
4669 5435 8.346476 TGTTACTTCATGTTGCACATTTTTAC 57.654 30.769 0.00 0.00 36.53 2.01
5010 5780 8.985805 CCTCTGTAACTTAATGTAAGACGTTTT 58.014 33.333 0.00 0.00 39.09 2.43
5411 6181 0.106769 TTGAGCCTTCAGTGTGCCAA 60.107 50.000 0.00 0.00 34.15 4.52
5486 6256 0.041684 TCTCTGATGGGCTGACTCCA 59.958 55.000 0.00 0.00 38.82 3.86
5492 6262 2.046507 GGGCTGACTCCAGTGCTG 60.047 66.667 0.00 0.00 42.35 4.41
5540 6310 1.915769 AGCTCCGGCAAACTCCTCT 60.916 57.895 0.00 0.00 41.70 3.69
5557 6327 0.468226 TCTGGTATCGATGTTGGCCC 59.532 55.000 8.54 0.00 0.00 5.80
5615 6385 1.202806 CCTCTGTTCTCCAACCTGCAA 60.203 52.381 0.00 0.00 0.00 4.08
5675 6445 2.396955 CGGTACCGTCTCAGCGACT 61.397 63.158 26.39 0.00 40.59 4.18
5690 6460 0.035056 CGACTGGATTTTCCTGCCCT 60.035 55.000 0.82 0.00 38.86 5.19
5692 6462 0.779997 ACTGGATTTTCCTGCCCTGT 59.220 50.000 0.82 0.00 38.86 4.00
5695 6465 0.972471 GGATTTTCCTGCCCTGTGGG 60.972 60.000 0.00 0.00 38.71 4.61
5861 6631 5.696270 TGTTCATGTGTTGCTTACAGTAGAG 59.304 40.000 0.00 0.00 37.45 2.43
5960 6730 3.052036 GCAAGCATTCGTGTGAACAAAT 58.948 40.909 0.00 0.00 36.81 2.32
6048 6818 6.096846 TCACTGAAGATGTCGAGGATGAATTA 59.903 38.462 0.00 0.00 0.00 1.40
6195 8768 1.302511 ACTGGTTCACGTCCATGGC 60.303 57.895 6.96 0.96 34.26 4.40
6292 8867 0.958091 AAATGTGCGGTGCTGCTTTA 59.042 45.000 0.00 0.00 35.36 1.85
6354 8929 0.701303 CGTAGCGTCACGTTCTTGAC 59.299 55.000 0.00 0.00 42.24 3.18
6426 9001 0.179054 GATCCAGGCGGGTTTAGGAC 60.179 60.000 2.94 0.00 38.11 3.85
6514 9089 4.253257 GACCGGCGGCTAGTCTCG 62.253 72.222 28.71 0.00 0.00 4.04
6516 9091 4.554363 CCGGCGGCTAGTCTCGTG 62.554 72.222 15.42 0.00 0.00 4.35
6526 9101 0.242825 TAGTCTCGTGGGCTTGTTCG 59.757 55.000 0.00 0.00 0.00 3.95
6547 9122 0.530870 GTGACTATTCTCCCAGCGCC 60.531 60.000 2.29 0.00 0.00 6.53
6552 9127 2.315781 TATTCTCCCAGCGCCTGCAG 62.316 60.000 6.78 6.78 46.23 4.41
6555 9130 4.269523 TCCCAGCGCCTGCAGTTT 62.270 61.111 13.81 0.00 46.23 2.66
6556 9131 3.297620 CCCAGCGCCTGCAGTTTT 61.298 61.111 13.81 0.00 46.23 2.43
6557 9132 2.049802 CCAGCGCCTGCAGTTTTG 60.050 61.111 13.81 5.45 46.23 2.44
6558 9133 2.723746 CAGCGCCTGCAGTTTTGT 59.276 55.556 13.81 0.00 46.23 2.83
6559 9134 1.659335 CAGCGCCTGCAGTTTTGTG 60.659 57.895 13.81 4.90 46.23 3.33
6622 9211 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
6623 9212 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
6624 9213 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
6625 9214 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
6626 9215 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
6627 9216 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
6628 9217 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
6629 9218 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
6630 9219 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
6631 9220 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
6632 9221 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
6633 9222 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
6634 9223 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
6635 9224 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
6636 9225 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
6643 9232 3.954030 CGCTCATATACACGCACATAC 57.046 47.619 0.00 0.00 0.00 2.39
6644 9233 3.305110 CGCTCATATACACGCACATACA 58.695 45.455 0.00 0.00 0.00 2.29
6645 9234 3.119628 CGCTCATATACACGCACATACAC 59.880 47.826 0.00 0.00 0.00 2.90
6646 9235 4.299155 GCTCATATACACGCACATACACT 58.701 43.478 0.00 0.00 0.00 3.55
6647 9236 4.383052 GCTCATATACACGCACATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
6648 9237 5.508200 TCATATACACGCACATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
6649 9238 6.084326 TCATATACACGCACATACACTCAT 57.916 37.500 0.00 0.00 0.00 2.90
6650 9239 6.149633 TCATATACACGCACATACACTCATC 58.850 40.000 0.00 0.00 0.00 2.92
6651 9240 2.010145 ACACGCACATACACTCATCC 57.990 50.000 0.00 0.00 0.00 3.51
6652 9241 1.275010 ACACGCACATACACTCATCCA 59.725 47.619 0.00 0.00 0.00 3.41
6653 9242 2.093500 ACACGCACATACACTCATCCAT 60.093 45.455 0.00 0.00 0.00 3.41
6654 9243 3.132111 ACACGCACATACACTCATCCATA 59.868 43.478 0.00 0.00 0.00 2.74
6655 9244 4.202253 ACACGCACATACACTCATCCATAT 60.202 41.667 0.00 0.00 0.00 1.78
6656 9245 5.010617 ACACGCACATACACTCATCCATATA 59.989 40.000 0.00 0.00 0.00 0.86
6657 9246 5.925969 CACGCACATACACTCATCCATATAA 59.074 40.000 0.00 0.00 0.00 0.98
6658 9247 6.423604 CACGCACATACACTCATCCATATAAA 59.576 38.462 0.00 0.00 0.00 1.40
6659 9248 6.423905 ACGCACATACACTCATCCATATAAAC 59.576 38.462 0.00 0.00 0.00 2.01
6660 9249 6.399986 CGCACATACACTCATCCATATAAACG 60.400 42.308 0.00 0.00 0.00 3.60
6661 9250 6.618592 GCACATACACTCATCCATATAAACGC 60.619 42.308 0.00 0.00 0.00 4.84
6662 9251 6.423604 CACATACACTCATCCATATAAACGCA 59.576 38.462 0.00 0.00 0.00 5.24
6663 9252 6.423905 ACATACACTCATCCATATAAACGCAC 59.576 38.462 0.00 0.00 0.00 5.34
6664 9253 4.765273 ACACTCATCCATATAAACGCACA 58.235 39.130 0.00 0.00 0.00 4.57
6665 9254 4.570772 ACACTCATCCATATAAACGCACAC 59.429 41.667 0.00 0.00 0.00 3.82
6666 9255 4.570369 CACTCATCCATATAAACGCACACA 59.430 41.667 0.00 0.00 0.00 3.72
6667 9256 4.570772 ACTCATCCATATAAACGCACACAC 59.429 41.667 0.00 0.00 0.00 3.82
6668 9257 3.553917 TCATCCATATAAACGCACACACG 59.446 43.478 0.00 0.00 39.50 4.49
6669 9258 1.661617 TCCATATAAACGCACACACGC 59.338 47.619 0.00 0.00 36.19 5.34
6670 9259 1.395262 CCATATAAACGCACACACGCA 59.605 47.619 0.00 0.00 36.19 5.24
6671 9260 2.427169 CATATAAACGCACACACGCAC 58.573 47.619 0.00 0.00 36.19 5.34
6672 9261 1.499049 TATAAACGCACACACGCACA 58.501 45.000 0.00 0.00 36.19 4.57
6673 9262 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
6674 9263 2.037913 TAAACGCACACACGCACACC 62.038 55.000 0.00 0.00 36.19 4.16
6677 9266 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
6678 9267 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
6679 9268 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
6680 9269 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
6681 9270 1.192146 ACACACGCACACCCTATCCT 61.192 55.000 0.00 0.00 0.00 3.24
6682 9271 0.036388 CACACGCACACCCTATCCTT 60.036 55.000 0.00 0.00 0.00 3.36
6683 9272 1.206132 CACACGCACACCCTATCCTTA 59.794 52.381 0.00 0.00 0.00 2.69
6684 9273 2.116238 ACACGCACACCCTATCCTTAT 58.884 47.619 0.00 0.00 0.00 1.73
6685 9274 2.158957 ACACGCACACCCTATCCTTATG 60.159 50.000 0.00 0.00 0.00 1.90
6686 9275 2.102420 CACGCACACCCTATCCTTATGA 59.898 50.000 0.00 0.00 0.00 2.15
6687 9276 2.365617 ACGCACACCCTATCCTTATGAG 59.634 50.000 0.00 0.00 0.00 2.90
6688 9277 2.772287 GCACACCCTATCCTTATGAGC 58.228 52.381 0.00 0.00 0.00 4.26
6689 9278 2.104792 GCACACCCTATCCTTATGAGCA 59.895 50.000 0.00 0.00 0.00 4.26
6690 9279 3.733337 CACACCCTATCCTTATGAGCAC 58.267 50.000 0.00 0.00 0.00 4.40
6691 9280 2.706190 ACACCCTATCCTTATGAGCACC 59.294 50.000 0.00 0.00 0.00 5.01
6692 9281 2.975489 CACCCTATCCTTATGAGCACCT 59.025 50.000 0.00 0.00 0.00 4.00
6693 9282 3.392616 CACCCTATCCTTATGAGCACCTT 59.607 47.826 0.00 0.00 0.00 3.50
6694 9283 3.648545 ACCCTATCCTTATGAGCACCTTC 59.351 47.826 0.00 0.00 0.00 3.46
6695 9284 3.648067 CCCTATCCTTATGAGCACCTTCA 59.352 47.826 0.00 0.00 0.00 3.02
6696 9285 4.103153 CCCTATCCTTATGAGCACCTTCAA 59.897 45.833 0.00 0.00 0.00 2.69
6697 9286 5.303971 CCTATCCTTATGAGCACCTTCAAG 58.696 45.833 0.00 0.00 0.00 3.02
6698 9287 5.070981 CCTATCCTTATGAGCACCTTCAAGA 59.929 44.000 0.00 0.00 0.00 3.02
6699 9288 4.478206 TCCTTATGAGCACCTTCAAGAG 57.522 45.455 0.00 0.00 0.00 2.85
6700 9289 4.096681 TCCTTATGAGCACCTTCAAGAGA 58.903 43.478 0.00 0.00 0.00 3.10
6701 9290 4.081420 TCCTTATGAGCACCTTCAAGAGAC 60.081 45.833 0.00 0.00 0.00 3.36
6702 9291 4.081198 CCTTATGAGCACCTTCAAGAGACT 60.081 45.833 0.00 0.00 0.00 3.24
6703 9292 2.827800 TGAGCACCTTCAAGAGACTG 57.172 50.000 0.00 0.00 0.00 3.51
6704 9293 2.319844 TGAGCACCTTCAAGAGACTGA 58.680 47.619 0.00 0.00 0.00 3.41
6705 9294 2.298446 TGAGCACCTTCAAGAGACTGAG 59.702 50.000 0.00 0.00 0.00 3.35
6706 9295 1.001860 AGCACCTTCAAGAGACTGAGC 59.998 52.381 0.00 0.00 0.00 4.26
6707 9296 1.943507 GCACCTTCAAGAGACTGAGCC 60.944 57.143 0.00 0.00 0.00 4.70
6708 9297 0.605589 ACCTTCAAGAGACTGAGCCG 59.394 55.000 0.00 0.00 0.00 5.52
6709 9298 0.108424 CCTTCAAGAGACTGAGCCGG 60.108 60.000 0.00 0.00 0.00 6.13
6710 9299 0.739112 CTTCAAGAGACTGAGCCGGC 60.739 60.000 21.89 21.89 0.00 6.13
6711 9300 1.471829 TTCAAGAGACTGAGCCGGCA 61.472 55.000 31.54 7.98 0.00 5.69
6712 9301 1.220206 CAAGAGACTGAGCCGGCAT 59.780 57.895 31.54 14.28 0.00 4.40
6713 9302 0.461548 CAAGAGACTGAGCCGGCATA 59.538 55.000 31.54 16.21 0.00 3.14
6714 9303 1.069823 CAAGAGACTGAGCCGGCATAT 59.930 52.381 31.54 8.11 0.00 1.78
6715 9304 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
6716 9305 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
6717 9306 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
6718 9307 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
6719 9308 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
6720 9309 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
6721 9310 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
6722 9311 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
6723 9312 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
6724 9313 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
6725 9314 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
6726 9315 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
6727 9316 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
6728 9317 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
6729 9318 5.587844 GCCGGCATATCATCTTGAGATTTAT 59.412 40.000 24.80 0.00 31.21 1.40
6730 9319 6.457934 GCCGGCATATCATCTTGAGATTTATG 60.458 42.308 24.80 12.28 34.43 1.90
6731 9320 6.820152 CCGGCATATCATCTTGAGATTTATGA 59.180 38.462 17.06 5.24 33.82 2.15
6732 9321 7.335171 CCGGCATATCATCTTGAGATTTATGAA 59.665 37.037 17.06 0.00 33.82 2.57
6733 9322 8.388853 CGGCATATCATCTTGAGATTTATGAAG 58.611 37.037 17.06 10.18 33.82 3.02
6734 9323 9.228949 GGCATATCATCTTGAGATTTATGAAGT 57.771 33.333 17.06 0.00 33.82 3.01
6738 9327 8.674263 ATCATCTTGAGATTTATGAAGTCACC 57.326 34.615 0.00 0.00 32.47 4.02
6739 9328 6.758416 TCATCTTGAGATTTATGAAGTCACCG 59.242 38.462 0.00 0.00 31.21 4.94
6740 9329 6.037786 TCTTGAGATTTATGAAGTCACCGT 57.962 37.500 0.00 0.00 0.00 4.83
6741 9330 7.165460 TCTTGAGATTTATGAAGTCACCGTA 57.835 36.000 0.00 0.00 0.00 4.02
6742 9331 7.258441 TCTTGAGATTTATGAAGTCACCGTAG 58.742 38.462 0.00 0.00 0.00 3.51
6755 9344 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
6756 9345 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
6761 9350 4.907034 CGCCTCGTCGTCGATGGG 62.907 72.222 14.28 11.00 45.21 4.00
6762 9351 3.515286 GCCTCGTCGTCGATGGGA 61.515 66.667 16.08 4.83 45.21 4.37
6763 9352 3.060020 GCCTCGTCGTCGATGGGAA 62.060 63.158 16.08 0.00 45.21 3.97
6764 9353 1.226603 CCTCGTCGTCGATGGGAAC 60.227 63.158 16.08 0.00 45.21 3.62
6765 9354 1.582937 CTCGTCGTCGATGGGAACG 60.583 63.158 8.75 10.22 45.21 3.95
6766 9355 2.177531 CGTCGTCGATGGGAACGT 59.822 61.111 6.56 0.00 39.71 3.99
6767 9356 1.866496 CGTCGTCGATGGGAACGTC 60.866 63.158 6.56 0.00 43.20 4.34
6768 9357 1.505353 GTCGTCGATGGGAACGTCT 59.495 57.895 4.48 0.00 44.51 4.18
6769 9358 0.522915 GTCGTCGATGGGAACGTCTC 60.523 60.000 4.48 0.00 44.51 3.36
6770 9359 1.226603 CGTCGATGGGAACGTCTCC 60.227 63.158 0.00 7.90 44.51 3.71
6771 9360 1.654954 CGTCGATGGGAACGTCTCCT 61.655 60.000 13.94 0.00 44.68 3.69
6772 9361 0.100861 GTCGATGGGAACGTCTCCTC 59.899 60.000 13.94 6.42 44.68 3.71
6773 9362 1.035932 TCGATGGGAACGTCTCCTCC 61.036 60.000 13.94 6.16 44.68 4.30
6777 9366 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
6778 9367 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
6779 9368 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
6780 9369 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
6781 9370 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
6782 9371 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
6793 9382 2.787249 CTGAAAGTGCATCGCCGG 59.213 61.111 0.00 0.00 0.00 6.13
6794 9383 1.741401 CTGAAAGTGCATCGCCGGA 60.741 57.895 5.05 0.00 0.00 5.14
6795 9384 1.298157 CTGAAAGTGCATCGCCGGAA 61.298 55.000 5.05 0.00 0.00 4.30
6796 9385 0.886938 TGAAAGTGCATCGCCGGAAA 60.887 50.000 5.05 0.00 0.00 3.13
6797 9386 0.451783 GAAAGTGCATCGCCGGAAAT 59.548 50.000 5.05 0.00 0.00 2.17
6798 9387 0.451783 AAAGTGCATCGCCGGAAATC 59.548 50.000 5.05 0.00 0.00 2.17
6799 9388 1.376609 AAGTGCATCGCCGGAAATCC 61.377 55.000 5.05 0.00 0.00 3.01
6800 9389 2.515991 TGCATCGCCGGAAATCCC 60.516 61.111 5.05 0.00 0.00 3.85
6801 9390 2.515991 GCATCGCCGGAAATCCCA 60.516 61.111 5.05 0.00 34.14 4.37
6802 9391 2.118404 GCATCGCCGGAAATCCCAA 61.118 57.895 5.05 0.00 34.14 4.12
6803 9392 1.662438 GCATCGCCGGAAATCCCAAA 61.662 55.000 5.05 0.00 34.14 3.28
6804 9393 0.814457 CATCGCCGGAAATCCCAAAA 59.186 50.000 5.05 0.00 34.14 2.44
6805 9394 1.408702 CATCGCCGGAAATCCCAAAAT 59.591 47.619 5.05 0.00 34.14 1.82
6806 9395 2.421751 TCGCCGGAAATCCCAAAATA 57.578 45.000 5.05 0.00 34.14 1.40
6807 9396 2.724454 TCGCCGGAAATCCCAAAATAA 58.276 42.857 5.05 0.00 34.14 1.40
6808 9397 3.090037 TCGCCGGAAATCCCAAAATAAA 58.910 40.909 5.05 0.00 34.14 1.40
6809 9398 3.702045 TCGCCGGAAATCCCAAAATAAAT 59.298 39.130 5.05 0.00 34.14 1.40
6810 9399 4.048504 CGCCGGAAATCCCAAAATAAATC 58.951 43.478 5.05 0.00 34.14 2.17
6811 9400 4.377021 GCCGGAAATCCCAAAATAAATCC 58.623 43.478 5.05 0.00 34.14 3.01
6812 9401 4.141824 GCCGGAAATCCCAAAATAAATCCA 60.142 41.667 5.05 0.00 34.14 3.41
6813 9402 5.600696 CCGGAAATCCCAAAATAAATCCAG 58.399 41.667 0.00 0.00 34.14 3.86
6814 9403 5.453198 CCGGAAATCCCAAAATAAATCCAGG 60.453 44.000 0.00 0.00 34.14 4.45
6815 9404 5.362430 CGGAAATCCCAAAATAAATCCAGGA 59.638 40.000 0.00 0.00 34.14 3.86
6816 9405 6.127196 CGGAAATCCCAAAATAAATCCAGGAA 60.127 38.462 0.00 0.00 34.14 3.36
6817 9406 7.418942 CGGAAATCCCAAAATAAATCCAGGAAT 60.419 37.037 0.00 0.00 34.14 3.01
6818 9407 8.933653 GGAAATCCCAAAATAAATCCAGGAATA 58.066 33.333 0.00 0.00 34.14 1.75
6822 9411 7.734942 TCCCAAAATAAATCCAGGAATAATGC 58.265 34.615 0.00 0.00 0.00 3.56
6823 9412 6.646240 CCCAAAATAAATCCAGGAATAATGCG 59.354 38.462 0.00 0.00 0.00 4.73
6824 9413 7.432869 CCAAAATAAATCCAGGAATAATGCGA 58.567 34.615 0.00 0.00 0.00 5.10
6825 9414 7.596248 CCAAAATAAATCCAGGAATAATGCGAG 59.404 37.037 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 1.240256 TAACCCACGCATCACCAAAC 58.760 50.000 0.00 0.00 0.00 2.93
100 101 4.417506 GTTAAAATAACCCACGCATCACC 58.582 43.478 0.00 0.00 0.00 4.02
216 227 2.961741 CCAAGTGCTAGCTATCTGAGGA 59.038 50.000 17.23 0.00 0.00 3.71
217 228 2.547642 GCCAAGTGCTAGCTATCTGAGG 60.548 54.545 17.23 15.96 36.87 3.86
218 229 2.547642 GGCCAAGTGCTAGCTATCTGAG 60.548 54.545 17.23 7.94 40.92 3.35
309 325 7.100458 TCTTTTCACCTTTCTTCTTTTCCTG 57.900 36.000 0.00 0.00 0.00 3.86
356 372 4.021916 TGGTTTGAGCTACTACTCCTACC 58.978 47.826 0.00 0.00 38.58 3.18
362 378 4.699925 TGGTTTGGTTTGAGCTACTACT 57.300 40.909 0.00 0.00 0.00 2.57
363 379 5.506815 GGTTTGGTTTGGTTTGAGCTACTAC 60.507 44.000 0.00 0.00 0.00 2.73
364 380 4.581409 GGTTTGGTTTGGTTTGAGCTACTA 59.419 41.667 0.00 0.00 0.00 1.82
365 381 3.383505 GGTTTGGTTTGGTTTGAGCTACT 59.616 43.478 0.00 0.00 0.00 2.57
366 382 3.491964 GGGTTTGGTTTGGTTTGAGCTAC 60.492 47.826 0.00 0.00 0.00 3.58
368 384 1.484653 GGGTTTGGTTTGGTTTGAGCT 59.515 47.619 0.00 0.00 0.00 4.09
369 385 1.474320 GGGGTTTGGTTTGGTTTGAGC 60.474 52.381 0.00 0.00 0.00 4.26
370 386 1.140052 GGGGGTTTGGTTTGGTTTGAG 59.860 52.381 0.00 0.00 0.00 3.02
371 387 1.205055 GGGGGTTTGGTTTGGTTTGA 58.795 50.000 0.00 0.00 0.00 2.69
377 394 4.979335 ACAATTATTGGGGGTTTGGTTTG 58.021 39.130 9.88 0.00 34.12 2.93
532 561 0.679640 CAATACAAGCAAGCGGGGGA 60.680 55.000 0.00 0.00 0.00 4.81
813 850 0.033601 AGCTTGTGTGTTGGGGTTCA 60.034 50.000 0.00 0.00 0.00 3.18
820 857 1.600957 CTGTCTGGAGCTTGTGTGTTG 59.399 52.381 0.00 0.00 0.00 3.33
846 883 0.751643 ACACCCACACAAGCAACTCC 60.752 55.000 0.00 0.00 0.00 3.85
854 891 1.225983 CTCCCACACACCCACACAA 59.774 57.895 0.00 0.00 0.00 3.33
1032 1081 2.681778 AGCTCGGTGAGGTCCCAG 60.682 66.667 0.00 0.00 35.30 4.45
1042 1091 2.963371 GTCGTTCTCCAGCTCGGT 59.037 61.111 2.68 0.00 35.57 4.69
1329 1393 2.284331 TTGCTCAGGTCCGCCCTA 60.284 61.111 0.00 0.00 43.86 3.53
1346 1410 2.494918 GATGGTAGTCGCGGCACT 59.505 61.111 15.58 9.92 0.00 4.40
1493 1557 8.787852 AGAAAAAGAAGAGCTACGATTTGATTT 58.212 29.630 0.00 0.00 0.00 2.17
1522 1588 3.521560 AGCGAAGAGAATGATACGCAAA 58.478 40.909 0.00 0.00 46.65 3.68
1523 1589 3.116300 GAGCGAAGAGAATGATACGCAA 58.884 45.455 0.00 0.00 46.65 4.85
1524 1590 2.099098 TGAGCGAAGAGAATGATACGCA 59.901 45.455 0.00 0.00 46.65 5.24
1525 1591 2.732366 TGAGCGAAGAGAATGATACGC 58.268 47.619 0.00 0.00 45.03 4.42
1527 1593 4.876125 TGGATGAGCGAAGAGAATGATAC 58.124 43.478 0.00 0.00 0.00 2.24
1528 1594 5.735285 ATGGATGAGCGAAGAGAATGATA 57.265 39.130 0.00 0.00 0.00 2.15
1549 1615 3.392285 TGATGGATGGACGATGAAGGAAT 59.608 43.478 0.00 0.00 0.00 3.01
1570 1637 7.224557 TGACGGTAGTGTATTGATCATTGATTG 59.775 37.037 0.00 0.00 0.00 2.67
1585 1656 7.636150 ACTAGTAATAATGTGACGGTAGTGT 57.364 36.000 0.00 0.00 0.00 3.55
1589 1660 9.709495 AAACAAACTAGTAATAATGTGACGGTA 57.291 29.630 0.00 0.00 0.00 4.02
1633 1704 4.358851 CCGAATTGTGCTCAAACAAAGAA 58.641 39.130 5.15 0.00 42.98 2.52
1634 1705 3.795150 GCCGAATTGTGCTCAAACAAAGA 60.795 43.478 5.15 0.00 42.98 2.52
1892 1970 3.498481 CCAGGATTCAGAAAAGGTGGTGA 60.498 47.826 0.00 0.00 0.00 4.02
2036 2114 5.743026 TTAACTCGTCAACTGCAAATCAA 57.257 34.783 0.00 0.00 0.00 2.57
2037 2115 5.743026 TTTAACTCGTCAACTGCAAATCA 57.257 34.783 0.00 0.00 0.00 2.57
2046 2124 4.446719 ACGGAACAGATTTAACTCGTCAAC 59.553 41.667 0.00 0.00 0.00 3.18
2053 2131 7.057149 CGATTAACACGGAACAGATTTAACT 57.943 36.000 0.00 0.00 0.00 2.24
2076 2154 1.333791 GCACCGAGAAAAACAACTCCG 60.334 52.381 0.00 0.00 0.00 4.63
2159 2239 0.385751 CATATCAGGCGTCCGTCTGT 59.614 55.000 19.42 10.46 46.84 3.41
2161 2241 1.621992 ATCATATCAGGCGTCCGTCT 58.378 50.000 0.00 0.00 0.00 4.18
2213 2314 3.575687 AGGAAATCCACAGGAAAAAGCAG 59.424 43.478 1.67 0.00 38.89 4.24
2368 2472 0.393808 TTTGGGAGTTAGCATCGCCC 60.394 55.000 7.44 7.44 43.59 6.13
2448 2552 0.689412 TCCACACTCCACAGTCCACA 60.689 55.000 0.00 0.00 0.00 4.17
2522 2629 9.950496 CCAGCCTTAGAAAATATACATGTATCT 57.050 33.333 21.49 15.04 0.00 1.98
2688 2905 4.916041 AAGTCCAAACTGATCAGGATGA 57.084 40.909 26.08 13.74 43.04 2.92
2773 3267 5.353394 TGATAAGTAGGATTTGACGCCTT 57.647 39.130 0.00 0.00 35.73 4.35
3035 3529 4.639310 AGTCTTCTGGCTAATGCATGAAAG 59.361 41.667 0.00 0.00 41.91 2.62
3180 3678 4.515028 TCAGGTTCCGAGTAGAGGATAA 57.485 45.455 0.00 0.00 37.65 1.75
3330 3828 5.598830 GGTAGAAGTCCATAGAATCACCTGA 59.401 44.000 0.00 0.00 0.00 3.86
3373 3871 1.933853 GGAACACATTAGCAGCCTACG 59.066 52.381 0.00 0.00 0.00 3.51
3374 3872 3.198872 GAGGAACACATTAGCAGCCTAC 58.801 50.000 0.00 0.00 0.00 3.18
3396 3894 7.263100 TCATGTATCAAGGCAATAACATGAC 57.737 36.000 10.90 0.00 38.11 3.06
3518 4016 6.094603 TCTGTTAACCGTATGTCTAGAAGGAC 59.905 42.308 2.48 0.00 36.81 3.85
3533 4031 5.571741 CACAGTATAGTGTGTCTGTTAACCG 59.428 44.000 26.22 0.00 42.52 4.44
3538 4036 4.021368 GGACCACAGTATAGTGTGTCTGTT 60.021 45.833 29.95 14.53 45.47 3.16
3571 4069 4.422840 CAGACAAAAATATTGCGATGCCA 58.577 39.130 0.00 0.00 0.00 4.92
3746 4244 7.324935 TCTCGCTAAATCACCAAACTACATAA 58.675 34.615 0.00 0.00 0.00 1.90
3902 4408 8.648693 GGATGTAGGTTATTTCCTTAGCTCTTA 58.351 37.037 0.00 0.00 38.86 2.10
3903 4409 7.348537 AGGATGTAGGTTATTTCCTTAGCTCTT 59.651 37.037 0.00 0.00 38.86 2.85
3904 4410 6.847036 AGGATGTAGGTTATTTCCTTAGCTCT 59.153 38.462 0.00 0.00 38.86 4.09
3905 4411 7.068686 AGGATGTAGGTTATTTCCTTAGCTC 57.931 40.000 0.00 0.00 38.86 4.09
3906 4412 8.743636 ATAGGATGTAGGTTATTTCCTTAGCT 57.256 34.615 0.00 0.00 37.89 3.32
3970 4549 0.330941 TAATGCTGGGGTGTCATGCA 59.669 50.000 0.00 0.00 38.05 3.96
4004 4583 6.238538 CCGAAACCTAACAACACACTGTTATT 60.239 38.462 0.00 0.00 38.77 1.40
4057 4636 4.202020 GGGATTTAAGAAAACGAGGATGGC 60.202 45.833 0.00 0.00 0.00 4.40
4176 4755 6.096695 GTGTGTTTCCAGCTACTTTCAAAAA 58.903 36.000 0.00 0.00 0.00 1.94
4281 4860 8.274322 TGAAGGATTAATATCAGGTCACAACAT 58.726 33.333 0.00 0.00 32.09 2.71
4474 5054 7.404671 AGTGAAAATGTAACCTTGTTGACTT 57.595 32.000 0.00 0.00 0.00 3.01
4526 5292 9.294030 GACAGACAATTCAATATTTCCAATCAC 57.706 33.333 0.00 0.00 0.00 3.06
4637 5403 3.751175 GCAACATGAAGTAACAGGCTACA 59.249 43.478 0.00 0.00 0.00 2.74
4666 5432 8.650143 AGAAGGAAAATTGCTGAATAAGGTAA 57.350 30.769 0.00 0.00 0.00 2.85
4785 5552 6.381498 TTTACACTTCATCCAACCTCCATA 57.619 37.500 0.00 0.00 0.00 2.74
5018 5788 6.968335 AGACATTTTTGCAGTTCAAATTTTGC 59.032 30.769 4.19 5.76 43.53 3.68
5110 5880 6.326323 TGGAACTGCTACAGATACATATGGAA 59.674 38.462 7.80 0.00 35.18 3.53
5411 6181 2.600769 ACCGTCTTGAGGAGCGGT 60.601 61.111 1.36 1.36 46.31 5.68
5486 6256 0.678395 CACAGTCTGAGTCCAGCACT 59.322 55.000 6.91 0.00 40.20 4.40
5492 6262 1.472480 GAGAGAGCACAGTCTGAGTCC 59.528 57.143 6.91 0.00 0.00 3.85
5498 6268 3.084039 CAGAAGAGAGAGAGCACAGTCT 58.916 50.000 0.00 0.00 0.00 3.24
5540 6310 1.145156 CGGGCCAACATCGATACCA 59.855 57.895 4.39 0.00 0.00 3.25
5557 6327 2.069273 GTTCAGTCTGTTGGACCATCG 58.931 52.381 0.00 0.00 45.54 3.84
5615 6385 1.220206 CCAGGACGAGCTGCTGAAT 59.780 57.895 7.01 0.00 40.82 2.57
5675 6445 0.251742 CCACAGGGCAGGAAAATCCA 60.252 55.000 0.00 0.00 39.61 3.41
5690 6460 1.133199 AGTTGCTCATTTTCCCCCACA 60.133 47.619 0.00 0.00 0.00 4.17
5692 6462 1.146774 TCAGTTGCTCATTTTCCCCCA 59.853 47.619 0.00 0.00 0.00 4.96
5695 6465 4.320608 TTGTTCAGTTGCTCATTTTCCC 57.679 40.909 0.00 0.00 0.00 3.97
5861 6631 1.673920 CACTAGGGAGAAGAGACGAGC 59.326 57.143 0.00 0.00 0.00 5.03
5960 6730 7.389803 TTTCGAGGAATTGATTTATGCTGAA 57.610 32.000 0.00 0.00 0.00 3.02
6048 6818 8.829746 TGTCAAATAGGAATATGGAGCAGATAT 58.170 33.333 0.00 0.00 0.00 1.63
6067 6837 4.256110 TCGACTGATTCTGCATGTCAAAT 58.744 39.130 0.00 0.00 0.00 2.32
6195 8768 7.698836 AAAGAAAACATGAAAGTTGGATTCG 57.301 32.000 0.00 0.00 0.00 3.34
6205 8778 6.039616 CCCGAGTGAAAAAGAAAACATGAAA 58.960 36.000 0.00 0.00 0.00 2.69
6292 8867 4.816385 ACCGCATATTTCATGTTCTCGAAT 59.184 37.500 0.00 0.00 0.00 3.34
6367 8942 2.674380 CCTGTTGCCACCTGCCTC 60.674 66.667 0.00 0.00 40.16 4.70
6374 8949 2.983592 CGGAACCCCTGTTGCCAC 60.984 66.667 0.00 0.00 39.44 5.01
6415 8990 1.669999 ATCCGTCGGTCCTAAACCCG 61.670 60.000 11.88 0.00 46.27 5.28
6478 9053 4.740695 CGGTCCTTCGTTTCTTATCAGATC 59.259 45.833 0.00 0.00 0.00 2.75
6514 9089 0.814010 AGTCACACGAACAAGCCCAC 60.814 55.000 0.00 0.00 0.00 4.61
6516 9091 2.094762 ATAGTCACACGAACAAGCCC 57.905 50.000 0.00 0.00 0.00 5.19
6526 9101 1.927895 CGCTGGGAGAATAGTCACAC 58.072 55.000 0.00 0.00 0.00 3.82
6598 9187 6.293407 GCTTGTGTCTGTACTGATGCTAAAAA 60.293 38.462 5.69 0.00 0.00 1.94
6603 9192 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
6604 9193 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
6605 9194 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
6606 9195 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
6607 9196 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
6608 9197 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
6609 9198 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
6610 9199 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
6611 9200 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
6612 9201 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
6613 9202 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
6614 9203 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
6615 9204 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
6616 9205 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
6617 9206 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
6618 9207 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
6623 9212 3.119628 GTGTATGTGCGTGTATATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
6624 9213 4.299155 AGTGTATGTGCGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
6625 9214 5.519722 TGAGTGTATGTGCGTGTATATGAG 58.480 41.667 0.00 0.00 0.00 2.90
6626 9215 5.508200 TGAGTGTATGTGCGTGTATATGA 57.492 39.130 0.00 0.00 0.00 2.15
6627 9216 5.346011 GGATGAGTGTATGTGCGTGTATATG 59.654 44.000 0.00 0.00 0.00 1.78
6628 9217 5.010617 TGGATGAGTGTATGTGCGTGTATAT 59.989 40.000 0.00 0.00 0.00 0.86
6629 9218 4.339814 TGGATGAGTGTATGTGCGTGTATA 59.660 41.667 0.00 0.00 0.00 1.47
6630 9219 3.132111 TGGATGAGTGTATGTGCGTGTAT 59.868 43.478 0.00 0.00 0.00 2.29
6631 9220 2.494073 TGGATGAGTGTATGTGCGTGTA 59.506 45.455 0.00 0.00 0.00 2.90
6632 9221 1.275010 TGGATGAGTGTATGTGCGTGT 59.725 47.619 0.00 0.00 0.00 4.49
6633 9222 2.008752 TGGATGAGTGTATGTGCGTG 57.991 50.000 0.00 0.00 0.00 5.34
6634 9223 2.988010 ATGGATGAGTGTATGTGCGT 57.012 45.000 0.00 0.00 0.00 5.24
6635 9224 6.399986 CGTTTATATGGATGAGTGTATGTGCG 60.400 42.308 0.00 0.00 0.00 5.34
6636 9225 6.618592 GCGTTTATATGGATGAGTGTATGTGC 60.619 42.308 0.00 0.00 0.00 4.57
6637 9226 6.423604 TGCGTTTATATGGATGAGTGTATGTG 59.576 38.462 0.00 0.00 0.00 3.21
6638 9227 6.423905 GTGCGTTTATATGGATGAGTGTATGT 59.576 38.462 0.00 0.00 0.00 2.29
6639 9228 6.423604 TGTGCGTTTATATGGATGAGTGTATG 59.576 38.462 0.00 0.00 0.00 2.39
6640 9229 6.423905 GTGTGCGTTTATATGGATGAGTGTAT 59.576 38.462 0.00 0.00 0.00 2.29
6641 9230 5.751509 GTGTGCGTTTATATGGATGAGTGTA 59.248 40.000 0.00 0.00 0.00 2.90
6642 9231 4.570772 GTGTGCGTTTATATGGATGAGTGT 59.429 41.667 0.00 0.00 0.00 3.55
6643 9232 4.570369 TGTGTGCGTTTATATGGATGAGTG 59.430 41.667 0.00 0.00 0.00 3.51
6644 9233 4.570772 GTGTGTGCGTTTATATGGATGAGT 59.429 41.667 0.00 0.00 0.00 3.41
6645 9234 4.318050 CGTGTGTGCGTTTATATGGATGAG 60.318 45.833 0.00 0.00 0.00 2.90
6646 9235 3.553917 CGTGTGTGCGTTTATATGGATGA 59.446 43.478 0.00 0.00 0.00 2.92
6647 9236 3.844585 GCGTGTGTGCGTTTATATGGATG 60.845 47.826 0.00 0.00 0.00 3.51
6648 9237 2.286833 GCGTGTGTGCGTTTATATGGAT 59.713 45.455 0.00 0.00 0.00 3.41
6649 9238 1.661617 GCGTGTGTGCGTTTATATGGA 59.338 47.619 0.00 0.00 0.00 3.41
6650 9239 1.395262 TGCGTGTGTGCGTTTATATGG 59.605 47.619 0.00 0.00 37.81 2.74
6651 9240 2.159774 TGTGCGTGTGTGCGTTTATATG 60.160 45.455 0.00 0.00 37.81 1.78
6652 9241 2.070028 TGTGCGTGTGTGCGTTTATAT 58.930 42.857 0.00 0.00 37.81 0.86
6653 9242 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
6654 9243 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
6655 9244 1.348938 GTGTGCGTGTGTGCGTTTA 59.651 52.632 0.00 0.00 37.81 2.01
6656 9245 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
6657 9246 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
6660 9249 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
6661 9250 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
6662 9251 1.192146 AGGATAGGGTGTGCGTGTGT 61.192 55.000 0.00 0.00 0.00 3.72
6663 9252 0.036388 AAGGATAGGGTGTGCGTGTG 60.036 55.000 0.00 0.00 0.00 3.82
6664 9253 1.563924 TAAGGATAGGGTGTGCGTGT 58.436 50.000 0.00 0.00 0.00 4.49
6665 9254 2.102420 TCATAAGGATAGGGTGTGCGTG 59.898 50.000 0.00 0.00 0.00 5.34
6666 9255 2.365617 CTCATAAGGATAGGGTGTGCGT 59.634 50.000 0.00 0.00 0.00 5.24
6667 9256 2.868044 GCTCATAAGGATAGGGTGTGCG 60.868 54.545 0.00 0.00 0.00 5.34
6668 9257 2.104792 TGCTCATAAGGATAGGGTGTGC 59.895 50.000 0.00 0.00 0.00 4.57
6669 9258 3.495100 GGTGCTCATAAGGATAGGGTGTG 60.495 52.174 0.00 0.00 0.00 3.82
6670 9259 2.706190 GGTGCTCATAAGGATAGGGTGT 59.294 50.000 0.00 0.00 0.00 4.16
6671 9260 2.975489 AGGTGCTCATAAGGATAGGGTG 59.025 50.000 0.00 0.00 0.00 4.61
6672 9261 3.352611 AGGTGCTCATAAGGATAGGGT 57.647 47.619 0.00 0.00 0.00 4.34
6673 9262 3.648067 TGAAGGTGCTCATAAGGATAGGG 59.352 47.826 0.00 0.00 0.00 3.53
6674 9263 4.963318 TGAAGGTGCTCATAAGGATAGG 57.037 45.455 0.00 0.00 0.00 2.57
6675 9264 6.041409 TCTCTTGAAGGTGCTCATAAGGATAG 59.959 42.308 0.00 0.00 0.00 2.08
6676 9265 5.899547 TCTCTTGAAGGTGCTCATAAGGATA 59.100 40.000 0.00 0.00 0.00 2.59
6677 9266 4.718774 TCTCTTGAAGGTGCTCATAAGGAT 59.281 41.667 0.00 0.00 0.00 3.24
6678 9267 4.081420 GTCTCTTGAAGGTGCTCATAAGGA 60.081 45.833 0.00 0.00 0.00 3.36
6679 9268 4.081198 AGTCTCTTGAAGGTGCTCATAAGG 60.081 45.833 0.00 0.00 0.00 2.69
6680 9269 4.869297 CAGTCTCTTGAAGGTGCTCATAAG 59.131 45.833 0.00 0.00 0.00 1.73
6681 9270 4.528206 TCAGTCTCTTGAAGGTGCTCATAA 59.472 41.667 0.00 0.00 0.00 1.90
6682 9271 4.089361 TCAGTCTCTTGAAGGTGCTCATA 58.911 43.478 0.00 0.00 0.00 2.15
6683 9272 2.902486 TCAGTCTCTTGAAGGTGCTCAT 59.098 45.455 0.00 0.00 0.00 2.90
6684 9273 2.298446 CTCAGTCTCTTGAAGGTGCTCA 59.702 50.000 0.00 0.00 0.00 4.26
6685 9274 2.930455 GCTCAGTCTCTTGAAGGTGCTC 60.930 54.545 0.00 0.00 0.00 4.26
6686 9275 1.001860 GCTCAGTCTCTTGAAGGTGCT 59.998 52.381 0.00 0.00 0.00 4.40
6687 9276 1.437625 GCTCAGTCTCTTGAAGGTGC 58.562 55.000 0.00 0.00 0.00 5.01
6688 9277 1.671261 CGGCTCAGTCTCTTGAAGGTG 60.671 57.143 0.00 0.00 0.00 4.00
6689 9278 0.605589 CGGCTCAGTCTCTTGAAGGT 59.394 55.000 0.00 0.00 0.00 3.50
6690 9279 0.108424 CCGGCTCAGTCTCTTGAAGG 60.108 60.000 0.00 0.00 0.00 3.46
6691 9280 0.739112 GCCGGCTCAGTCTCTTGAAG 60.739 60.000 22.15 0.00 0.00 3.02
6692 9281 1.293498 GCCGGCTCAGTCTCTTGAA 59.707 57.895 22.15 0.00 0.00 2.69
6693 9282 1.260538 ATGCCGGCTCAGTCTCTTGA 61.261 55.000 29.70 1.81 0.00 3.02
6694 9283 0.461548 TATGCCGGCTCAGTCTCTTG 59.538 55.000 29.70 0.00 0.00 3.02
6695 9284 1.342819 GATATGCCGGCTCAGTCTCTT 59.657 52.381 29.70 1.60 0.00 2.85
6696 9285 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
6697 9286 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
6698 9287 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
6699 9288 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
6700 9289 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
6701 9290 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
6702 9291 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
6703 9292 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
6704 9293 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
6705 9294 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
6706 9295 6.820152 TCATAAATCTCAAGATGATATGCCGG 59.180 38.462 0.00 0.00 36.32 6.13
6707 9296 7.838771 TCATAAATCTCAAGATGATATGCCG 57.161 36.000 15.00 0.00 36.32 5.69
6708 9297 9.228949 ACTTCATAAATCTCAAGATGATATGCC 57.771 33.333 15.00 0.00 36.32 4.40
6712 9301 9.770097 GGTGACTTCATAAATCTCAAGATGATA 57.230 33.333 0.00 0.00 34.49 2.15
6713 9302 7.440556 CGGTGACTTCATAAATCTCAAGATGAT 59.559 37.037 0.00 0.00 34.49 2.45
6714 9303 6.758416 CGGTGACTTCATAAATCTCAAGATGA 59.242 38.462 0.00 0.00 34.49 2.92
6715 9304 6.536582 ACGGTGACTTCATAAATCTCAAGATG 59.463 38.462 0.00 0.00 34.49 2.90
6716 9305 6.644347 ACGGTGACTTCATAAATCTCAAGAT 58.356 36.000 0.00 0.00 36.07 2.40
6717 9306 6.037786 ACGGTGACTTCATAAATCTCAAGA 57.962 37.500 0.00 0.00 0.00 3.02
6718 9307 6.477033 CCTACGGTGACTTCATAAATCTCAAG 59.523 42.308 0.00 0.00 0.00 3.02
6719 9308 6.338146 CCTACGGTGACTTCATAAATCTCAA 58.662 40.000 0.00 0.00 0.00 3.02
6720 9309 5.681437 GCCTACGGTGACTTCATAAATCTCA 60.681 44.000 0.00 0.00 0.00 3.27
6721 9310 4.745620 GCCTACGGTGACTTCATAAATCTC 59.254 45.833 0.00 0.00 0.00 2.75
6722 9311 4.694339 GCCTACGGTGACTTCATAAATCT 58.306 43.478 0.00 0.00 0.00 2.40
6723 9312 3.489785 CGCCTACGGTGACTTCATAAATC 59.510 47.826 0.00 0.00 34.74 2.17
6724 9313 3.454375 CGCCTACGGTGACTTCATAAAT 58.546 45.455 0.00 0.00 34.74 1.40
6725 9314 2.883574 CGCCTACGGTGACTTCATAAA 58.116 47.619 0.00 0.00 34.74 1.40
6726 9315 1.470285 GCGCCTACGGTGACTTCATAA 60.470 52.381 0.00 0.00 40.57 1.90
6727 9316 0.101759 GCGCCTACGGTGACTTCATA 59.898 55.000 0.00 0.00 40.57 2.15
6728 9317 1.153628 GCGCCTACGGTGACTTCAT 60.154 57.895 0.00 0.00 40.57 2.57
6729 9318 2.260434 GCGCCTACGGTGACTTCA 59.740 61.111 0.00 0.00 40.57 3.02
6730 9319 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
6733 9322 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
6735 9324 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
6738 9327 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
6749 9338 1.866496 GACGTTCCCATCGACGACG 60.866 63.158 0.00 0.00 41.53 5.12
6750 9339 0.522915 GAGACGTTCCCATCGACGAC 60.523 60.000 0.00 0.00 41.53 4.34
6751 9340 1.651240 GGAGACGTTCCCATCGACGA 61.651 60.000 0.00 0.00 41.53 4.20
6752 9341 1.226603 GGAGACGTTCCCATCGACG 60.227 63.158 0.00 0.00 44.34 5.12
6753 9342 4.808649 GGAGACGTTCCCATCGAC 57.191 61.111 0.00 0.00 40.37 4.20
6761 9350 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
6762 9351 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
6763 9352 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
6764 9353 0.969894 ACTTTCAGTGGGAGGAGACG 59.030 55.000 0.00 0.00 0.00 4.18
6765 9354 1.609320 GCACTTTCAGTGGGAGGAGAC 60.609 57.143 6.05 0.00 46.01 3.36
6766 9355 0.687354 GCACTTTCAGTGGGAGGAGA 59.313 55.000 6.05 0.00 46.01 3.71
6767 9356 0.397941 TGCACTTTCAGTGGGAGGAG 59.602 55.000 6.05 0.00 46.01 3.69
6768 9357 1.003580 GATGCACTTTCAGTGGGAGGA 59.996 52.381 6.05 0.00 46.01 3.71
6769 9358 1.457346 GATGCACTTTCAGTGGGAGG 58.543 55.000 6.05 0.00 46.01 4.30
6770 9359 1.081892 CGATGCACTTTCAGTGGGAG 58.918 55.000 6.05 0.00 46.01 4.30
6771 9360 0.955428 GCGATGCACTTTCAGTGGGA 60.955 55.000 6.05 0.00 46.01 4.37
6772 9361 1.503542 GCGATGCACTTTCAGTGGG 59.496 57.895 6.05 0.00 46.01 4.61
6773 9362 1.503542 GGCGATGCACTTTCAGTGG 59.496 57.895 6.05 0.00 46.01 4.00
6775 9364 2.034879 CCGGCGATGCACTTTCAGT 61.035 57.895 9.30 0.00 0.00 3.41
6776 9365 1.298157 TTCCGGCGATGCACTTTCAG 61.298 55.000 9.30 0.00 0.00 3.02
6777 9366 0.886938 TTTCCGGCGATGCACTTTCA 60.887 50.000 9.30 0.00 0.00 2.69
6778 9367 0.451783 ATTTCCGGCGATGCACTTTC 59.548 50.000 9.30 0.00 0.00 2.62
6779 9368 0.451783 GATTTCCGGCGATGCACTTT 59.548 50.000 9.30 0.00 0.00 2.66
6780 9369 1.376609 GGATTTCCGGCGATGCACTT 61.377 55.000 9.30 0.00 0.00 3.16
6781 9370 1.819632 GGATTTCCGGCGATGCACT 60.820 57.895 9.30 0.00 0.00 4.40
6782 9371 2.715624 GGATTTCCGGCGATGCAC 59.284 61.111 9.30 0.00 0.00 4.57
6783 9372 2.515991 GGGATTTCCGGCGATGCA 60.516 61.111 9.30 0.00 36.71 3.96
6784 9373 1.662438 TTTGGGATTTCCGGCGATGC 61.662 55.000 9.30 0.00 38.76 3.91
6785 9374 0.814457 TTTTGGGATTTCCGGCGATG 59.186 50.000 9.30 0.00 38.76 3.84
6786 9375 1.775385 ATTTTGGGATTTCCGGCGAT 58.225 45.000 9.30 0.00 38.76 4.58
6787 9376 2.421751 TATTTTGGGATTTCCGGCGA 57.578 45.000 9.30 0.00 38.76 5.54
6788 9377 3.512033 TTTATTTTGGGATTTCCGGCG 57.488 42.857 0.00 0.00 38.76 6.46
6789 9378 4.141824 TGGATTTATTTTGGGATTTCCGGC 60.142 41.667 0.00 0.00 38.76 6.13
6790 9379 5.453198 CCTGGATTTATTTTGGGATTTCCGG 60.453 44.000 0.00 0.00 38.76 5.14
6791 9380 5.362430 TCCTGGATTTATTTTGGGATTTCCG 59.638 40.000 0.00 0.00 38.76 4.30
6792 9381 6.806668 TCCTGGATTTATTTTGGGATTTCC 57.193 37.500 0.00 0.00 0.00 3.13
6796 9385 8.377799 GCATTATTCCTGGATTTATTTTGGGAT 58.622 33.333 0.00 0.00 0.00 3.85
6797 9386 7.471260 CGCATTATTCCTGGATTTATTTTGGGA 60.471 37.037 0.00 0.00 0.00 4.37
6798 9387 6.646240 CGCATTATTCCTGGATTTATTTTGGG 59.354 38.462 0.00 0.00 0.00 4.12
6799 9388 7.432869 TCGCATTATTCCTGGATTTATTTTGG 58.567 34.615 0.00 0.00 0.00 3.28
6800 9389 8.511465 CTCGCATTATTCCTGGATTTATTTTG 57.489 34.615 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.