Multiple sequence alignment - TraesCS7B01G158100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G158100 chr7B 100.000 6951 0 0 1 6951 213453941 213460891 0.000000e+00 12837.0
1 TraesCS7B01G158100 chr7B 93.694 111 7 0 3632 3742 357651484 357651594 4.310000e-37 167.0
2 TraesCS7B01G158100 chr7D 96.791 3927 88 14 1 3908 236817898 236821805 0.000000e+00 6519.0
3 TraesCS7B01G158100 chr7D 96.438 2190 24 15 4776 6951 236822706 236824855 0.000000e+00 3563.0
4 TraesCS7B01G158100 chr7D 94.805 847 14 5 3943 4770 236821808 236822643 0.000000e+00 1293.0
5 TraesCS7B01G158100 chr7D 100.000 39 0 0 4741 4779 236822680 236822642 9.670000e-09 73.1
6 TraesCS7B01G158100 chr7D 90.000 50 3 2 4734 4781 15146945 15146994 5.820000e-06 63.9
7 TraesCS7B01G158100 chr7A 97.389 3830 92 6 7 3833 252174775 252178599 0.000000e+00 6512.0
8 TraesCS7B01G158100 chr7A 97.461 1418 20 5 4986 6399 252179563 252180968 0.000000e+00 2405.0
9 TraesCS7B01G158100 chr7A 95.091 876 25 5 3842 4701 252178699 252179572 0.000000e+00 1363.0
10 TraesCS7B01G158100 chr7A 97.735 574 8 4 6383 6951 252181181 252181754 0.000000e+00 983.0
11 TraesCS7B01G158100 chr3D 93.519 108 7 0 3631 3738 536330684 536330577 2.010000e-35 161.0
12 TraesCS7B01G158100 chr2A 91.453 117 10 0 3632 3748 205917600 205917716 2.010000e-35 161.0
13 TraesCS7B01G158100 chr3B 92.727 110 8 0 3629 3738 157237741 157237632 7.220000e-35 159.0
14 TraesCS7B01G158100 chr3B 93.458 107 6 1 3632 3738 672778079 672778184 2.600000e-34 158.0
15 TraesCS7B01G158100 chr3B 91.837 49 2 2 4736 4783 814655409 814655362 4.500000e-07 67.6
16 TraesCS7B01G158100 chr3B 90.385 52 1 3 4731 4779 156863969 156864019 1.620000e-06 65.8
17 TraesCS7B01G158100 chr1B 89.600 125 11 2 3629 3752 314565340 314565463 2.600000e-34 158.0
18 TraesCS7B01G158100 chr4D 88.281 128 12 3 3631 3757 259497366 259497241 4.340000e-32 150.0
19 TraesCS7B01G158100 chr4D 93.023 43 1 2 4726 4768 384974378 384974338 2.090000e-05 62.1
20 TraesCS7B01G158100 chr6A 91.837 49 2 2 4731 4779 214565394 214565348 4.500000e-07 67.6
21 TraesCS7B01G158100 chr1A 88.889 54 2 3 4730 4779 313907560 313907507 5.820000e-06 63.9
22 TraesCS7B01G158100 chr2B 81.579 76 10 4 4698 4770 89556458 89556384 7.530000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G158100 chr7B 213453941 213460891 6950 False 12837.000000 12837 100.000000 1 6951 1 chr7B.!!$F1 6950
1 TraesCS7B01G158100 chr7D 236817898 236824855 6957 False 3791.666667 6519 96.011333 1 6951 3 chr7D.!!$F2 6950
2 TraesCS7B01G158100 chr7A 252174775 252181754 6979 False 2815.750000 6512 96.919000 7 6951 4 chr7A.!!$F1 6944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 688 0.179227 TCAATGCGACGCACGAAATG 60.179 50.000 27.06 17.94 43.04 2.32 F
849 858 0.951040 AGGCGTGCTACTTGTCTTGC 60.951 55.000 0.00 0.00 0.00 4.01 F
882 891 1.446099 TCTAAAGCCACTCGCAGCG 60.446 57.895 9.06 9.06 41.38 5.18 F
1106 1117 2.247358 GCACAAATTTCTCCTCCCCAA 58.753 47.619 0.00 0.00 0.00 4.12 F
1669 1681 3.131396 GTCGCTCAAGAAACTTGAGGAA 58.869 45.455 29.80 14.72 44.46 3.36 F
2563 2581 0.396811 AACCCCAGACAAGAACCTCG 59.603 55.000 0.00 0.00 0.00 4.63 F
3184 3203 2.899838 AGGCACTTGAAACGCGCA 60.900 55.556 5.73 0.00 27.25 6.09 F
3941 4051 1.379916 CCATGACACCTCAAGCCCA 59.620 57.895 0.00 0.00 0.00 5.36 F
4770 4910 4.082408 TCCGTCCCATAATATAAGAGCGTG 60.082 45.833 0.00 0.00 0.00 5.34 F
4772 4912 4.857588 CGTCCCATAATATAAGAGCGTGTC 59.142 45.833 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1588 1600 0.178068 GTCCTGCTATTTCGGAGGCA 59.822 55.000 0.00 0.00 41.77 4.75 R
1725 1737 0.685097 ACAGGACGGTTGTAGCACAT 59.315 50.000 0.00 0.00 0.00 3.21 R
2135 2153 0.744281 CCGAGGTGTTTTGGCACTTT 59.256 50.000 0.00 0.00 39.21 2.66 R
2187 2205 1.202758 TCCTGATGGCGTTGAACTTGT 60.203 47.619 0.00 0.00 0.00 3.16 R
3391 3410 1.472878 GGAGGGCGGAATTCTGTTTTC 59.527 52.381 15.63 9.97 0.00 2.29 R
3872 3982 0.250901 GCCACACAGTTCAGGATGGT 60.251 55.000 0.00 0.00 36.16 3.55 R
4812 5009 1.001487 CGCCTGAAATGCACACTCAAA 60.001 47.619 0.00 0.00 0.00 2.69 R
5274 5479 0.520847 TGTGTGTTGTGTGTGCTGTG 59.479 50.000 0.00 0.00 0.00 3.66 R
5806 6012 6.187125 TGCATATCTTTTTCAGCTGAGTTC 57.813 37.500 17.43 0.00 0.00 3.01 R
6313 6522 6.633500 TTCATCCTGTTGTTTCTGGTAAAG 57.367 37.500 0.00 0.00 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
232 233 3.373748 TGACAACATATACCAAAGCTGCG 59.626 43.478 0.00 0.00 0.00 5.18
336 337 4.100498 ACGTTAAGGAACAGAGAGAACCAA 59.900 41.667 1.43 0.00 35.06 3.67
403 404 2.582636 ACTTCCATGCCCAGGAAACTAT 59.417 45.455 0.00 0.00 44.07 2.12
423 431 6.837992 ACTATTACACGTTTACCTGCAAATG 58.162 36.000 0.00 0.00 0.00 2.32
454 462 4.940654 TCGATTAATGGTGTGAGCAATTGA 59.059 37.500 10.34 0.00 0.00 2.57
477 485 3.197116 CCCGTTACTTTCAGGTCTACCAT 59.803 47.826 1.26 0.00 38.89 3.55
548 557 1.122227 AAAGCAGCACCCATTTGTGT 58.878 45.000 0.00 0.00 38.52 3.72
555 564 1.150536 ACCCATTTGTGTGCTCGGT 59.849 52.632 0.00 0.00 0.00 4.69
677 686 0.305009 TTTCAATGCGACGCACGAAA 59.695 45.000 30.47 30.47 43.04 3.46
678 687 0.515127 TTCAATGCGACGCACGAAAT 59.485 45.000 27.06 5.74 43.04 2.17
679 688 0.179227 TCAATGCGACGCACGAAATG 60.179 50.000 27.06 17.94 43.04 2.32
849 858 0.951040 AGGCGTGCTACTTGTCTTGC 60.951 55.000 0.00 0.00 0.00 4.01
882 891 1.446099 TCTAAAGCCACTCGCAGCG 60.446 57.895 9.06 9.06 41.38 5.18
906 915 4.219944 TCCATCCACTCACTACTTACACAC 59.780 45.833 0.00 0.00 0.00 3.82
913 922 4.762765 ACTCACTACTTACACACCTCTCAG 59.237 45.833 0.00 0.00 0.00 3.35
1106 1117 2.247358 GCACAAATTTCTCCTCCCCAA 58.753 47.619 0.00 0.00 0.00 4.12
1261 1273 5.828328 CCAGGAAGTTTACAGGAGAAAAGTT 59.172 40.000 0.00 0.00 32.34 2.66
1486 1498 7.309377 CCTGAGAAAATGAATGGCACTCTAAAA 60.309 37.037 0.00 0.00 0.00 1.52
1669 1681 3.131396 GTCGCTCAAGAAACTTGAGGAA 58.869 45.455 29.80 14.72 44.46 3.36
1725 1737 9.847224 AGAAAAGGTACATAGAAACAGAAAAGA 57.153 29.630 0.00 0.00 0.00 2.52
1789 1801 6.582677 TTTTATTTTCTTTCAGGGCGATCA 57.417 33.333 0.00 0.00 0.00 2.92
2093 2105 5.676552 TCTAACTTAACAAACAGCACCAGA 58.323 37.500 0.00 0.00 0.00 3.86
2117 2135 6.916360 AACCAGGAAAATGATAGCAAAAGA 57.084 33.333 0.00 0.00 0.00 2.52
2135 2153 6.972328 GCAAAAGATACAAAACAGAACTGACA 59.028 34.615 8.87 0.00 0.00 3.58
2187 2205 1.522806 CTTGCGCCCGGTAGCATTA 60.523 57.895 19.60 7.15 43.42 1.90
2293 2311 9.438291 CAACTCCTCAATAATTTTATTGTAGCG 57.562 33.333 17.97 10.79 46.28 4.26
2426 2444 7.573968 AGCCTTGACAAACTTATGGAATATC 57.426 36.000 0.00 0.00 0.00 1.63
2563 2581 0.396811 AACCCCAGACAAGAACCTCG 59.603 55.000 0.00 0.00 0.00 4.63
2680 2699 4.027295 CAGCGACTAGATCAGTTAAAAGCG 60.027 45.833 0.00 0.00 37.72 4.68
2722 2741 9.719279 CTATTCATCAAAAAGAAAGCTGAGATC 57.281 33.333 0.00 0.00 0.00 2.75
3184 3203 2.899838 AGGCACTTGAAACGCGCA 60.900 55.556 5.73 0.00 27.25 6.09
3391 3410 6.276847 AGGTGAGAGCTTATAACTTCGAATG 58.723 40.000 0.00 0.00 0.00 2.67
3495 3514 3.485463 TCTACAGGGTCCAAACTGTTG 57.515 47.619 4.79 3.85 45.03 3.33
3666 3685 6.459670 TCCATATTACTAGTCGCTCAAACA 57.540 37.500 0.00 0.00 0.00 2.83
3668 3687 5.692204 CCATATTACTAGTCGCTCAAACAGG 59.308 44.000 0.00 0.00 0.00 4.00
3872 3982 3.399181 CTTAGCCACCGCCCCTCA 61.399 66.667 0.00 0.00 34.57 3.86
3941 4051 1.379916 CCATGACACCTCAAGCCCA 59.620 57.895 0.00 0.00 0.00 5.36
4250 4373 4.432712 ACAAGAAACCAAATGACAAGCAC 58.567 39.130 0.00 0.00 0.00 4.40
4325 4448 8.181904 AGTAAACAATGAATCCAACAACTGAT 57.818 30.769 0.00 0.00 0.00 2.90
4466 4597 5.201713 TCACTGGAAGAAGCCTATTATCG 57.798 43.478 0.00 0.00 37.43 2.92
4770 4910 4.082408 TCCGTCCCATAATATAAGAGCGTG 60.082 45.833 0.00 0.00 0.00 5.34
4772 4912 4.857588 CGTCCCATAATATAAGAGCGTGTC 59.142 45.833 0.00 0.00 0.00 3.67
4773 4913 5.564063 CGTCCCATAATATAAGAGCGTGTCA 60.564 44.000 0.00 0.00 0.00 3.58
4774 4914 6.220930 GTCCCATAATATAAGAGCGTGTCAA 58.779 40.000 0.00 0.00 0.00 3.18
4809 5006 6.285990 TCCGCTGGGAAAAATATACTTAGAC 58.714 40.000 0.00 0.00 40.15 2.59
4810 5007 5.469084 CCGCTGGGAAAAATATACTTAGACC 59.531 44.000 0.00 0.00 34.06 3.85
4811 5008 6.289064 CGCTGGGAAAAATATACTTAGACCT 58.711 40.000 0.00 0.00 0.00 3.85
4812 5009 6.766467 CGCTGGGAAAAATATACTTAGACCTT 59.234 38.462 0.00 0.00 0.00 3.50
4814 5011 8.967918 GCTGGGAAAAATATACTTAGACCTTTT 58.032 33.333 0.00 0.00 0.00 2.27
5269 5474 6.074356 GCCAAACAAAAATACACTCATCACAC 60.074 38.462 0.00 0.00 0.00 3.82
5270 5475 7.202526 CCAAACAAAAATACACTCATCACACT 58.797 34.615 0.00 0.00 0.00 3.55
5271 5476 7.379529 CCAAACAAAAATACACTCATCACACTC 59.620 37.037 0.00 0.00 0.00 3.51
5272 5477 7.566760 AACAAAAATACACTCATCACACTCA 57.433 32.000 0.00 0.00 0.00 3.41
5273 5478 7.750229 ACAAAAATACACTCATCACACTCAT 57.250 32.000 0.00 0.00 0.00 2.90
5274 5479 7.810658 ACAAAAATACACTCATCACACTCATC 58.189 34.615 0.00 0.00 0.00 2.92
5275 5480 7.445096 ACAAAAATACACTCATCACACTCATCA 59.555 33.333 0.00 0.00 0.00 3.07
5276 5481 6.974932 AAATACACTCATCACACTCATCAC 57.025 37.500 0.00 0.00 0.00 3.06
5277 5482 5.665916 ATACACTCATCACACTCATCACA 57.334 39.130 0.00 0.00 0.00 3.58
5806 6012 8.253810 TCTGTAGATCAACAACCTATTTCAGAG 58.746 37.037 0.00 0.00 0.00 3.35
6019 6225 3.755378 ACTCAAAGCTATTGCAGAAGTGG 59.245 43.478 1.12 0.00 42.74 4.00
6313 6522 1.966451 CGAGGCAAACAGTCACCCC 60.966 63.158 0.00 0.00 0.00 4.95
6370 6579 6.935741 TTGCGTGCCAACTTCTTATTATAT 57.064 33.333 0.00 0.00 0.00 0.86
6843 7284 0.419865 TTACCCCCTGATCACCCTCA 59.580 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.235926 GAGACGTCTGCTGGTTTTGC 59.764 55.000 25.58 0.00 0.00 3.68
159 160 0.523072 ATGTCACCTCGCATTTGTGC 59.477 50.000 0.00 0.00 0.00 4.57
269 270 4.952071 TGTGGATTGCTGAATTTTCCAA 57.048 36.364 0.00 0.00 38.16 3.53
403 404 5.297278 ACTTCATTTGCAGGTAAACGTGTAA 59.703 36.000 2.80 2.80 35.26 2.41
423 431 6.237861 GCTCACACCATTAATCGAGTAACTTC 60.238 42.308 7.58 0.00 0.00 3.01
477 485 1.895131 GGTTACTCGGTGGTTACTGGA 59.105 52.381 0.00 0.00 33.84 3.86
548 557 1.230635 GCAGCTGAAGAAACCGAGCA 61.231 55.000 20.43 0.00 33.67 4.26
849 858 3.300009 CTTTAGACGCTGGTTTTGCTTG 58.700 45.455 0.00 0.00 0.00 4.01
882 891 4.219944 TGTGTAAGTAGTGAGTGGATGGAC 59.780 45.833 0.00 0.00 0.00 4.02
906 915 1.153005 GCATTGGAGGGCTGAGAGG 60.153 63.158 0.00 0.00 0.00 3.69
913 922 0.107017 TAGAGCTTGCATTGGAGGGC 60.107 55.000 0.00 0.00 0.00 5.19
974 985 3.219052 AGAACTTCCGACAATCTCGAC 57.781 47.619 0.00 0.00 46.14 4.20
1051 1062 5.939764 TGAAGCAAGTATGTAGATGAGGT 57.060 39.130 0.00 0.00 0.00 3.85
1261 1273 5.632244 TCCGCGACATATTAGCACTATTA 57.368 39.130 8.23 0.00 0.00 0.98
1278 1290 0.447406 TTGATGCAGTTGAATCCGCG 59.553 50.000 0.00 0.00 0.00 6.46
1401 1413 4.728772 TGTTTCCCTTGTGAATGTGATCT 58.271 39.130 0.00 0.00 0.00 2.75
1454 1466 3.056393 CCATTCATTTTCTCAGGCTGCAA 60.056 43.478 10.34 1.81 0.00 4.08
1486 1498 2.026542 TGTGATGGAATTCAGCTGCTCT 60.027 45.455 9.47 0.00 32.06 4.09
1588 1600 0.178068 GTCCTGCTATTTCGGAGGCA 59.822 55.000 0.00 0.00 41.77 4.75
1669 1681 1.406539 CTTTGCAGCTCACTTTGGTGT 59.593 47.619 0.00 0.00 43.41 4.16
1724 1736 1.337823 ACAGGACGGTTGTAGCACATC 60.338 52.381 0.00 0.00 0.00 3.06
1725 1737 0.685097 ACAGGACGGTTGTAGCACAT 59.315 50.000 0.00 0.00 0.00 3.21
1789 1801 3.004752 ACTCTTCAACTTTGCACAGGT 57.995 42.857 4.63 0.00 0.00 4.00
2076 2088 3.764434 TGGTTTCTGGTGCTGTTTGTTAA 59.236 39.130 0.00 0.00 0.00 2.01
2093 2105 7.301868 TCTTTTGCTATCATTTTCCTGGTTT 57.698 32.000 0.00 0.00 0.00 3.27
2117 2135 6.265577 GCACTTTGTCAGTTCTGTTTTGTAT 58.734 36.000 0.00 0.00 30.92 2.29
2135 2153 0.744281 CCGAGGTGTTTTGGCACTTT 59.256 50.000 0.00 0.00 39.21 2.66
2187 2205 1.202758 TCCTGATGGCGTTGAACTTGT 60.203 47.619 0.00 0.00 0.00 3.16
2293 2311 8.252964 ACTAGGAAAATCACTAACATTCGAAC 57.747 34.615 0.00 0.00 0.00 3.95
2426 2444 5.617308 GCGTTCTTCCATCGTAGTATCTAGG 60.617 48.000 0.00 0.00 0.00 3.02
2563 2581 5.424121 AATTAATGCAGCATAACTCGGAC 57.576 39.130 8.75 0.00 0.00 4.79
2680 2699 7.478322 TGATGAATAGCTCTTTCATTTTGCTC 58.522 34.615 20.02 11.39 42.38 4.26
2722 2741 4.580167 TGGGATATCTTGCAAATTTCCTCG 59.420 41.667 19.79 2.71 0.00 4.63
3391 3410 1.472878 GGAGGGCGGAATTCTGTTTTC 59.527 52.381 15.63 9.97 0.00 2.29
3666 3685 6.791867 TGTATTTCAGTGCTAGATACACCT 57.208 37.500 0.00 0.00 38.87 4.00
3668 3687 9.619316 CTAGATGTATTTCAGTGCTAGATACAC 57.381 37.037 0.00 0.00 36.40 2.90
3872 3982 0.250901 GCCACACAGTTCAGGATGGT 60.251 55.000 0.00 0.00 36.16 3.55
3941 4051 6.179756 TGACAACAATGACAGGTAATGCTAT 58.820 36.000 0.00 0.00 0.00 2.97
4154 4277 8.729805 TTAATGAAAGCCAAAAATGAAGTTGT 57.270 26.923 0.00 0.00 0.00 3.32
4155 4278 9.654417 CTTTAATGAAAGCCAAAAATGAAGTTG 57.346 29.630 0.00 0.00 35.92 3.16
4156 4279 9.612066 TCTTTAATGAAAGCCAAAAATGAAGTT 57.388 25.926 0.00 0.00 41.68 2.66
4157 4280 9.264719 CTCTTTAATGAAAGCCAAAAATGAAGT 57.735 29.630 0.00 0.00 41.68 3.01
4158 4281 8.715088 CCTCTTTAATGAAAGCCAAAAATGAAG 58.285 33.333 0.00 0.00 41.68 3.02
4159 4282 8.428063 TCCTCTTTAATGAAAGCCAAAAATGAA 58.572 29.630 0.00 0.00 41.68 2.57
4160 4283 7.872483 GTCCTCTTTAATGAAAGCCAAAAATGA 59.128 33.333 0.00 0.00 41.68 2.57
4161 4284 7.874528 AGTCCTCTTTAATGAAAGCCAAAAATG 59.125 33.333 0.00 0.00 41.68 2.32
4162 4285 7.874528 CAGTCCTCTTTAATGAAAGCCAAAAAT 59.125 33.333 0.00 0.00 41.68 1.82
4163 4286 7.069331 TCAGTCCTCTTTAATGAAAGCCAAAAA 59.931 33.333 0.00 0.00 41.68 1.94
4164 4287 6.549364 TCAGTCCTCTTTAATGAAAGCCAAAA 59.451 34.615 0.00 0.00 41.68 2.44
4427 4558 6.365520 TCCAGTGATCTGCTGACTATTACTA 58.634 40.000 16.02 0.00 40.09 1.82
4441 4572 6.295011 CGATAATAGGCTTCTTCCAGTGATCT 60.295 42.308 0.00 0.00 0.00 2.75
4466 4597 9.895138 TGTTATTTACCTTTCTGGGAGTAATAC 57.105 33.333 0.00 0.00 41.11 1.89
4698 4838 2.682352 GTTGCCTGTTTGCCATTTGTTT 59.318 40.909 0.00 0.00 0.00 2.83
4770 4910 4.226761 CCAGCGGATACTTTGTTTTTGAC 58.773 43.478 0.00 0.00 0.00 3.18
4772 4912 3.254657 TCCCAGCGGATACTTTGTTTTTG 59.745 43.478 0.00 0.00 31.13 2.44
4773 4913 3.492337 TCCCAGCGGATACTTTGTTTTT 58.508 40.909 0.00 0.00 31.13 1.94
4774 4914 3.149005 TCCCAGCGGATACTTTGTTTT 57.851 42.857 0.00 0.00 31.13 2.43
4804 5001 5.592282 TGAAATGCACACTCAAAAGGTCTAA 59.408 36.000 0.00 0.00 0.00 2.10
4807 5004 4.293415 CTGAAATGCACACTCAAAAGGTC 58.707 43.478 0.00 0.00 0.00 3.85
4809 5006 3.645884 CCTGAAATGCACACTCAAAAGG 58.354 45.455 0.00 0.00 0.00 3.11
4810 5007 3.054878 GCCTGAAATGCACACTCAAAAG 58.945 45.455 0.00 0.00 0.00 2.27
4811 5008 2.543445 CGCCTGAAATGCACACTCAAAA 60.543 45.455 0.00 0.00 0.00 2.44
4812 5009 1.001487 CGCCTGAAATGCACACTCAAA 60.001 47.619 0.00 0.00 0.00 2.69
4814 5011 1.855213 GCGCCTGAAATGCACACTCA 61.855 55.000 0.00 0.00 0.00 3.41
4815 5012 1.154150 GCGCCTGAAATGCACACTC 60.154 57.895 0.00 0.00 0.00 3.51
4871 5068 9.793252 GTGATGAACTGTTCTAAAATATTGCAT 57.207 29.630 20.18 2.83 0.00 3.96
4872 5069 8.791675 TGTGATGAACTGTTCTAAAATATTGCA 58.208 29.630 20.18 6.06 0.00 4.08
4873 5070 9.793252 ATGTGATGAACTGTTCTAAAATATTGC 57.207 29.630 20.18 4.00 0.00 3.56
4881 5078 9.725019 ACAAGATAATGTGATGAACTGTTCTAA 57.275 29.630 20.18 2.70 30.82 2.10
4882 5079 9.725019 AACAAGATAATGTGATGAACTGTTCTA 57.275 29.630 20.18 8.31 32.81 2.10
4883 5080 8.627208 AACAAGATAATGTGATGAACTGTTCT 57.373 30.769 20.18 7.08 32.81 3.01
4884 5081 9.334693 GAAACAAGATAATGTGATGAACTGTTC 57.665 33.333 13.49 13.49 32.81 3.18
4885 5082 8.299570 GGAAACAAGATAATGTGATGAACTGTT 58.700 33.333 0.00 0.00 32.81 3.16
4886 5083 7.448161 TGGAAACAAGATAATGTGATGAACTGT 59.552 33.333 0.00 0.00 37.44 3.55
4887 5084 7.819644 TGGAAACAAGATAATGTGATGAACTG 58.180 34.615 0.00 0.00 37.44 3.16
5228 5433 2.951458 GCGTGCGGCCTTAAACTT 59.049 55.556 0.00 0.00 34.80 2.66
5269 5474 1.941975 TGTTGTGTGTGCTGTGATGAG 59.058 47.619 0.00 0.00 0.00 2.90
5270 5475 1.670295 GTGTTGTGTGTGCTGTGATGA 59.330 47.619 0.00 0.00 0.00 2.92
5271 5476 1.401199 TGTGTTGTGTGTGCTGTGATG 59.599 47.619 0.00 0.00 0.00 3.07
5272 5477 1.401552 GTGTGTTGTGTGTGCTGTGAT 59.598 47.619 0.00 0.00 0.00 3.06
5273 5478 0.801872 GTGTGTTGTGTGTGCTGTGA 59.198 50.000 0.00 0.00 0.00 3.58
5274 5479 0.520847 TGTGTGTTGTGTGTGCTGTG 59.479 50.000 0.00 0.00 0.00 3.66
5275 5480 0.521291 GTGTGTGTTGTGTGTGCTGT 59.479 50.000 0.00 0.00 0.00 4.40
5276 5481 0.520847 TGTGTGTGTTGTGTGTGCTG 59.479 50.000 0.00 0.00 0.00 4.41
5277 5482 0.521291 GTGTGTGTGTTGTGTGTGCT 59.479 50.000 0.00 0.00 0.00 4.40
5677 5883 7.439056 GTGTTGGGCCTTGATATAAATGAATTG 59.561 37.037 4.53 0.00 0.00 2.32
5806 6012 6.187125 TGCATATCTTTTTCAGCTGAGTTC 57.813 37.500 17.43 0.00 0.00 3.01
6313 6522 6.633500 TTCATCCTGTTGTTTCTGGTAAAG 57.367 37.500 0.00 0.00 0.00 1.85
6843 7284 5.478407 TGTCATTGTTACAGTCATGTCGAT 58.522 37.500 0.00 0.00 41.01 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.