Multiple sequence alignment - TraesCS7B01G157800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G157800 chr7B 100.000 7379 0 0 1 7379 213245868 213253246 0.000000e+00 13627.0
1 TraesCS7B01G157800 chr7B 92.971 313 21 1 1641 1953 137677504 137677815 8.730000e-124 455.0
2 TraesCS7B01G157800 chr7B 85.317 252 33 3 1970 2218 313691549 313691299 2.640000e-64 257.0
3 TraesCS7B01G157800 chr7B 87.755 147 12 5 6462 6606 63972563 63972705 4.580000e-37 167.0
4 TraesCS7B01G157800 chr7D 95.165 3247 121 13 115 3343 236638489 236641717 0.000000e+00 5094.0
5 TraesCS7B01G157800 chr7D 96.367 2780 78 7 3336 6101 236641780 236644550 0.000000e+00 4553.0
6 TraesCS7B01G157800 chr7D 88.983 472 22 10 6182 6642 236644548 236645000 2.330000e-154 556.0
7 TraesCS7B01G157800 chr7D 89.091 220 20 3 2004 2220 13688480 13688698 3.390000e-68 270.0
8 TraesCS7B01G157800 chr7D 95.402 87 4 0 1 87 236638215 236638301 9.980000e-29 139.0
9 TraesCS7B01G157800 chr7D 88.571 105 9 3 3500 3603 80969711 80969813 2.800000e-24 124.0
10 TraesCS7B01G157800 chr7A 96.399 2777 77 8 3336 6101 251744678 251747442 0.000000e+00 4553.0
11 TraesCS7B01G157800 chr7A 95.262 2005 73 8 1275 3269 251742569 251744561 0.000000e+00 3157.0
12 TraesCS7B01G157800 chr7A 92.653 735 35 14 429 1151 251741724 251742451 0.000000e+00 1040.0
13 TraesCS7B01G157800 chr7A 90.466 472 17 10 6182 6642 251747440 251747894 1.370000e-166 597.0
14 TraesCS7B01G157800 chr7A 84.317 593 77 10 6795 7379 251747896 251748480 3.860000e-157 566.0
15 TraesCS7B01G157800 chr7A 95.745 94 4 0 6096 6189 657720309 657720216 1.280000e-32 152.0
16 TraesCS7B01G157800 chr7A 88.571 105 9 3 3500 3603 83624265 83624367 2.800000e-24 124.0
17 TraesCS7B01G157800 chr7A 96.226 53 2 0 3291 3343 251744563 251744615 3.670000e-13 87.9
18 TraesCS7B01G157800 chr4B 85.969 449 56 7 141 583 540717604 540718051 2.410000e-129 473.0
19 TraesCS7B01G157800 chr4B 77.083 432 63 17 5126 5530 642086625 642087047 4.480000e-52 217.0
20 TraesCS7B01G157800 chr4B 90.826 109 8 2 6100 6207 392046783 392046676 2.150000e-30 145.0
21 TraesCS7B01G157800 chr5D 92.652 313 23 0 1641 1953 6164274 6163962 1.130000e-122 451.0
22 TraesCS7B01G157800 chr5D 92.652 313 21 2 1641 1953 503304510 503304820 4.060000e-122 449.0
23 TraesCS7B01G157800 chr5D 84.049 163 18 4 6641 6796 129872790 129872951 4.610000e-32 150.0
24 TraesCS7B01G157800 chr5D 94.643 56 1 2 1549 1604 12937823 12937876 1.320000e-12 86.1
25 TraesCS7B01G157800 chr1D 92.652 313 22 1 1641 1953 51859393 51859082 4.060000e-122 449.0
26 TraesCS7B01G157800 chr1D 85.354 198 16 10 6455 6642 246940484 246940678 7.560000e-45 193.0
27 TraesCS7B01G157800 chr1D 93.333 90 6 0 3519 3608 101285148 101285237 4.640000e-27 134.0
28 TraesCS7B01G157800 chr2D 92.605 311 23 0 1641 1951 135988167 135988477 1.460000e-121 448.0
29 TraesCS7B01G157800 chr2D 85.425 247 34 1 1971 2215 497919507 497919261 9.500000e-64 255.0
30 TraesCS7B01G157800 chr2D 89.706 136 11 3 6505 6639 243119391 243119524 3.540000e-38 171.0
31 TraesCS7B01G157800 chrUn 92.332 313 24 0 1641 1953 414538402 414538090 5.250000e-121 446.0
32 TraesCS7B01G157800 chrUn 83.133 166 19 5 6638 6796 81477636 81477799 7.720000e-30 143.0
33 TraesCS7B01G157800 chr6D 92.332 313 24 0 1641 1953 429815801 429815489 5.250000e-121 446.0
34 TraesCS7B01G157800 chr6D 83.544 158 18 4 6646 6796 145462468 145462624 2.780000e-29 141.0
35 TraesCS7B01G157800 chr6D 95.455 88 4 0 3519 3606 389976960 389976873 2.780000e-29 141.0
36 TraesCS7B01G157800 chr3D 85.714 266 36 1 1953 2216 170240244 170240509 5.640000e-71 279.0
37 TraesCS7B01G157800 chr3D 83.969 262 36 6 1956 2215 100179516 100179259 5.720000e-61 246.0
38 TraesCS7B01G157800 chr3D 86.667 165 20 2 6480 6644 104391418 104391256 1.640000e-41 182.0
39 TraesCS7B01G157800 chr3D 93.333 90 5 1 3519 3608 477907443 477907355 1.670000e-26 132.0
40 TraesCS7B01G157800 chr3B 85.075 268 34 5 1953 2216 245514213 245514478 1.220000e-67 268.0
41 TraesCS7B01G157800 chr3B 83.929 168 19 6 6638 6798 8816105 8816271 3.570000e-33 154.0
42 TraesCS7B01G157800 chr3B 93.220 59 2 2 1549 1607 51794076 51794020 1.320000e-12 86.1
43 TraesCS7B01G157800 chr3B 93.220 59 2 2 1549 1607 101911449 101911393 1.320000e-12 86.1
44 TraesCS7B01G157800 chr2A 83.835 266 37 3 1955 2216 46113311 46113048 1.590000e-61 248.0
45 TraesCS7B01G157800 chr2A 96.774 93 1 2 6093 6184 101846914 101846823 3.570000e-33 154.0
46 TraesCS7B01G157800 chr2A 92.233 103 5 3 6084 6184 181850126 181850025 7.720000e-30 143.0
47 TraesCS7B01G157800 chr5A 77.336 428 64 17 5126 5530 680075672 680076089 9.640000e-54 222.0
48 TraesCS7B01G157800 chr5A 84.049 163 16 6 6644 6799 136396934 136396775 1.660000e-31 148.0
49 TraesCS7B01G157800 chr5A 83.974 156 17 4 6655 6803 265281912 265281758 7.720000e-30 143.0
50 TraesCS7B01G157800 chr4D 76.179 403 58 20 5156 5530 499290840 499291232 2.120000e-40 178.0
51 TraesCS7B01G157800 chr4D 92.308 65 3 1 1552 1616 207038165 207038103 2.840000e-14 91.6
52 TraesCS7B01G157800 chr2B 94.000 100 4 2 6095 6193 642478461 642478559 4.610000e-32 150.0
53 TraesCS7B01G157800 chr1A 95.745 94 3 1 6099 6191 33232755 33232848 4.610000e-32 150.0
54 TraesCS7B01G157800 chr1A 83.041 171 17 7 6635 6796 106220548 106220715 2.150000e-30 145.0
55 TraesCS7B01G157800 chr1A 93.333 90 6 0 3519 3608 104216547 104216458 4.640000e-27 134.0
56 TraesCS7B01G157800 chr4A 83.432 169 19 5 6635 6796 298243889 298243723 1.660000e-31 148.0
57 TraesCS7B01G157800 chr4A 93.333 90 6 0 3518 3607 27643525 27643614 4.640000e-27 134.0
58 TraesCS7B01G157800 chr1B 93.939 99 5 1 6095 6192 61251342 61251244 1.660000e-31 148.0
59 TraesCS7B01G157800 chr1B 94.845 97 2 3 6091 6184 248358702 248358606 1.660000e-31 148.0
60 TraesCS7B01G157800 chr1B 84.049 163 17 7 6646 6800 334894509 334894670 1.660000e-31 148.0
61 TraesCS7B01G157800 chr1B 93.000 100 5 2 6098 6196 118420663 118420565 2.150000e-30 145.0
62 TraesCS7B01G157800 chr1B 93.220 59 2 2 1549 1607 543405897 543405841 1.320000e-12 86.1
63 TraesCS7B01G157800 chr5B 92.982 57 4 0 1549 1605 625213909 625213853 4.740000e-12 84.2
64 TraesCS7B01G157800 chr5B 92.982 57 4 0 1549 1605 628812814 628812758 4.740000e-12 84.2
65 TraesCS7B01G157800 chr6B 94.000 50 3 0 3 52 582403515 582403466 7.940000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G157800 chr7B 213245868 213253246 7378 False 13627.000000 13627 100.000000 1 7379 1 chr7B.!!$F3 7378
1 TraesCS7B01G157800 chr7D 236638215 236645000 6785 False 2585.500000 5094 93.979250 1 6642 4 chr7D.!!$F3 6641
2 TraesCS7B01G157800 chr7A 251741724 251748480 6756 False 1666.816667 4553 92.553833 429 7379 6 chr7A.!!$F2 6950

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 568 0.253044 TTCCCATTCTTGGCCTCGAG 59.747 55.000 5.13 5.13 42.15 4.04 F
470 634 0.605589 AAGTACAGGCCGCAGAAACC 60.606 55.000 0.00 0.00 0.00 3.27 F
1981 2165 0.250793 ACGTCCGGAAATACATGCCA 59.749 50.000 5.23 0.00 0.00 4.92 F
2548 2733 0.890996 CTGGTGGGGTTGTCTGCTTC 60.891 60.000 0.00 0.00 0.00 3.86 F
3301 3487 0.110678 ATGAGATCTGGGCATGCTGG 59.889 55.000 18.92 8.12 0.00 4.85 F
3674 3930 1.005450 TGGGGTGGAGCAAAACTATCC 59.995 52.381 0.00 0.00 0.00 2.59 F
5091 5359 2.098293 CCGGAGGCTGTTTGCATAC 58.902 57.895 0.00 0.00 46.14 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 2090 0.317799 AGTTTCGCCAATTGCATGCA 59.682 45.000 18.46 18.46 41.33 3.96 R
2373 2558 1.697432 TGGGTTCCGAGACAAACTGAT 59.303 47.619 0.00 0.00 0.00 2.90 R
3110 3296 1.202651 CCAACACCTCTCACTTTCCGT 60.203 52.381 0.00 0.00 0.00 4.69 R
4475 4738 2.291153 ACATAGCAACACAGGAGCCATT 60.291 45.455 0.00 0.00 0.00 3.16 R
4886 5149 3.008330 TCTAGCAGTCGGTTCTGAGTAC 58.992 50.000 7.21 0.00 37.61 2.73 R
5661 5933 2.798976 TGGCACATTGCTTTTCTGAC 57.201 45.000 0.00 0.00 44.28 3.51 R
6926 7210 0.326264 AGACAGAGGATGTGGTTGGC 59.674 55.000 0.00 0.00 44.17 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 7.921745 GGGGATCGATTTGCTCTAGTATATAAC 59.078 40.741 0.00 0.00 0.00 1.89
87 88 7.938140 ATATAACTACAAAAGCTTGAAGCCA 57.062 32.000 14.45 0.00 43.77 4.75
88 89 6.840780 ATAACTACAAAAGCTTGAAGCCAT 57.159 33.333 14.45 0.00 43.77 4.40
92 93 4.935352 ACAAAAGCTTGAAGCCATGTAA 57.065 36.364 14.45 0.00 43.77 2.41
93 94 5.473066 ACAAAAGCTTGAAGCCATGTAAT 57.527 34.783 14.45 0.00 43.77 1.89
94 95 5.857268 ACAAAAGCTTGAAGCCATGTAATT 58.143 33.333 14.45 0.00 43.77 1.40
95 96 5.697633 ACAAAAGCTTGAAGCCATGTAATTG 59.302 36.000 14.45 10.65 43.77 2.32
98 99 3.445096 AGCTTGAAGCCATGTAATTGTCC 59.555 43.478 14.45 0.00 43.77 4.02
99 100 3.445096 GCTTGAAGCCATGTAATTGTCCT 59.555 43.478 5.74 0.00 34.48 3.85
101 102 4.032960 TGAAGCCATGTAATTGTCCTGT 57.967 40.909 0.00 0.00 0.00 4.00
102 103 5.172687 TGAAGCCATGTAATTGTCCTGTA 57.827 39.130 0.00 0.00 0.00 2.74
104 105 5.589855 TGAAGCCATGTAATTGTCCTGTATG 59.410 40.000 0.00 0.00 0.00 2.39
105 106 4.464008 AGCCATGTAATTGTCCTGTATGG 58.536 43.478 0.00 0.00 37.30 2.74
135 296 8.619146 ATTATTATTTGTGACATTGCTCAACG 57.381 30.769 0.00 0.00 0.00 4.10
212 375 5.482908 AGGAATATAATTGAGGCGCTAGTG 58.517 41.667 7.64 0.00 0.00 2.74
220 383 0.741221 GAGGCGCTAGTGGAAACCTG 60.741 60.000 7.64 0.00 0.00 4.00
237 400 5.376854 AACCTGTGAATGTAGAAACATGC 57.623 39.130 0.00 0.00 45.79 4.06
284 448 0.958822 CGTGGGAAAGGAAACAAGGG 59.041 55.000 0.00 0.00 0.00 3.95
290 454 1.970640 GAAAGGAAACAAGGGCCATGT 59.029 47.619 8.93 8.93 0.00 3.21
298 462 4.600692 AACAAGGGCCATGTAGAAAAAC 57.399 40.909 15.71 0.00 0.00 2.43
299 463 3.571590 ACAAGGGCCATGTAGAAAAACA 58.428 40.909 13.62 0.00 0.00 2.83
300 464 3.573967 ACAAGGGCCATGTAGAAAAACAG 59.426 43.478 13.62 0.00 31.70 3.16
315 479 3.593442 AAACAGGACCCAACAATCAGA 57.407 42.857 0.00 0.00 0.00 3.27
357 521 2.485426 ACGGTCATGCATGAACTTTCTG 59.515 45.455 35.22 25.79 42.28 3.02
362 526 3.681417 TCATGCATGAACTTTCTGTCTCG 59.319 43.478 26.87 0.00 33.08 4.04
392 556 2.827921 GCCTCAACTGTCATTTCCCATT 59.172 45.455 0.00 0.00 0.00 3.16
404 568 0.253044 TTCCCATTCTTGGCCTCGAG 59.747 55.000 5.13 5.13 42.15 4.04
423 587 0.799393 GACTCCGCCAGAAAAAGAGC 59.201 55.000 0.00 0.00 0.00 4.09
444 608 4.460382 AGCTCACGATGGATGTTTGATTTT 59.540 37.500 0.00 0.00 0.00 1.82
458 622 6.491394 TGTTTGATTTTCCGTGAAAGTACAG 58.509 36.000 0.00 0.00 32.93 2.74
461 625 1.886886 TTTCCGTGAAAGTACAGGCC 58.113 50.000 0.00 0.00 0.00 5.19
470 634 0.605589 AAGTACAGGCCGCAGAAACC 60.606 55.000 0.00 0.00 0.00 3.27
489 653 9.722056 CAGAAACCTTCCTATGAAATAAAATCG 57.278 33.333 0.00 0.00 0.00 3.34
520 684 2.229062 TGCAAACCAAACGACACTTCAA 59.771 40.909 0.00 0.00 0.00 2.69
569 734 5.266788 TGCAGATTTCCTTCATCATTCCTT 58.733 37.500 0.00 0.00 0.00 3.36
588 753 0.947180 TCAAACCGAACGCAGCCTAC 60.947 55.000 0.00 0.00 0.00 3.18
589 754 1.670083 AAACCGAACGCAGCCTACC 60.670 57.895 0.00 0.00 0.00 3.18
592 757 1.810030 CCGAACGCAGCCTACCTTC 60.810 63.158 0.00 0.00 0.00 3.46
642 808 7.232534 ACCATAGGTAGACTTGAGAATGATCTC 59.767 40.741 0.00 0.00 42.77 2.75
732 898 1.332997 AGAACCGTTCGCCTCGTATAG 59.667 52.381 5.62 0.00 34.02 1.31
1250 1425 3.050876 TTTATGCCGTGGCGCGTT 61.051 55.556 20.01 6.37 45.51 4.84
1624 1807 8.560903 ACTTATGTGGATTTCCCTCTTAAGAAT 58.439 33.333 6.63 0.00 42.61 2.40
1689 1872 2.048444 CTGCATCCAGTAGCCACAAT 57.952 50.000 0.00 0.00 34.31 2.71
1981 2165 0.250793 ACGTCCGGAAATACATGCCA 59.749 50.000 5.23 0.00 0.00 4.92
1990 2174 7.001674 TCCGGAAATACATGCCATATAAACTT 58.998 34.615 0.00 0.00 0.00 2.66
2332 2517 4.878439 AGTACGCATTTGTGACTTGTCTA 58.122 39.130 2.35 0.00 0.00 2.59
2373 2558 3.322828 GGACGGGCTAGGTTGATGTATTA 59.677 47.826 0.00 0.00 0.00 0.98
2385 2570 8.723942 AGGTTGATGTATTATCAGTTTGTCTC 57.276 34.615 0.00 0.00 0.00 3.36
2474 2659 5.657302 GGACAAGAAGTGGAGGAGTTCTATA 59.343 44.000 0.00 0.00 42.63 1.31
2548 2733 0.890996 CTGGTGGGGTTGTCTGCTTC 60.891 60.000 0.00 0.00 0.00 3.86
2807 2993 2.225091 TGTTTCCATCAGTGGCCTCATT 60.225 45.455 3.32 0.00 45.63 2.57
3110 3296 6.360370 AAGAGAACTGCAATGAGTAAGGTA 57.640 37.500 0.00 0.00 0.00 3.08
3216 3402 9.294030 GAATGTAAGGAATGCATTTTAGTTCTG 57.706 33.333 14.33 0.00 43.35 3.02
3229 3415 9.787532 GCATTTTAGTTCTGTTATAGAAATGCA 57.212 29.630 19.54 0.00 45.38 3.96
3301 3487 0.110678 ATGAGATCTGGGCATGCTGG 59.889 55.000 18.92 8.12 0.00 4.85
3384 3640 7.434897 GTCTCAGTGCTTTCATAGACTATTCTG 59.565 40.741 0.00 0.00 32.75 3.02
3412 3668 7.596749 ACCTTTGTTTCATCTACGTAATGAG 57.403 36.000 15.28 0.00 34.76 2.90
3417 3673 5.803461 TGTTTCATCTACGTAATGAGGAACG 59.197 40.000 10.35 0.00 44.47 3.95
3524 3780 8.918202 ATACAATTTTGTTCTCTTGTACTCCA 57.082 30.769 0.63 0.00 42.35 3.86
3674 3930 1.005450 TGGGGTGGAGCAAAACTATCC 59.995 52.381 0.00 0.00 0.00 2.59
3746 4002 2.887152 AGGAGGCAAACATGTTGAGTTC 59.113 45.455 12.82 8.17 0.00 3.01
3945 4201 6.293845 GCATATGAAATGAATGGAGAGGTGAC 60.294 42.308 6.97 0.00 0.00 3.67
3960 4217 3.081061 AGGTGACTGCGCATTGATTTTA 58.919 40.909 12.24 0.00 41.13 1.52
4100 4357 6.586868 TTTTTGTTCATGCATGTGTTTCTC 57.413 33.333 25.43 10.06 0.00 2.87
4118 4375 6.017605 TGTTTCTCTGAAGCTGATTTTCTGTC 60.018 38.462 0.00 0.00 0.00 3.51
4330 4593 9.085645 TCTTACTGAACATATATATCCACCGTT 57.914 33.333 0.00 0.00 0.00 4.44
4461 4724 5.312079 AGATGCAACCTTATTATCTGGCTC 58.688 41.667 0.00 0.00 0.00 4.70
4475 4738 5.557576 ATCTGGCTCAATATTCTGCTGTA 57.442 39.130 8.52 0.00 0.00 2.74
4523 4786 3.818586 TCACCCGTCGTGATTTACC 57.181 52.632 0.00 0.00 46.80 2.85
4864 5127 6.863645 TCTTCTCTTGTCTGTTGAAGTAATCG 59.136 38.462 0.00 0.00 36.49 3.34
4875 5138 7.541091 TCTGTTGAAGTAATCGCAGTTAGTAAG 59.459 37.037 0.00 0.00 36.02 2.34
4886 5149 8.630278 ATCGCAGTTAGTAAGTTATGTAGTTG 57.370 34.615 0.00 0.00 0.00 3.16
4898 5161 6.618811 AGTTATGTAGTTGTACTCAGAACCG 58.381 40.000 0.00 0.00 32.83 4.44
4994 5262 9.759259 CATTACAATATACCGCAGTTATGAATG 57.241 33.333 0.00 0.00 0.00 2.67
5091 5359 2.098293 CCGGAGGCTGTTTGCATAC 58.902 57.895 0.00 0.00 46.14 2.39
5215 5487 6.426587 AGATGTGGCCTTTTATGATTAGTGT 58.573 36.000 3.32 0.00 0.00 3.55
5233 5505 3.961408 AGTGTAGCTGGTATTCTGGTAGG 59.039 47.826 0.00 0.00 0.00 3.18
5257 5529 7.724061 AGGTGTTAATCTACCATCAGTTTGTTT 59.276 33.333 8.59 0.00 39.46 2.83
5324 5596 8.465273 AGCACTTAGTTCTCATAAAACCTTTT 57.535 30.769 0.00 0.00 0.00 2.27
5470 5742 6.773638 AGGTTAGCATTACTTCCATGATAGG 58.226 40.000 0.00 0.00 0.00 2.57
5513 5785 2.499693 TGCAGCTTGTGTAGGTAGCATA 59.500 45.455 0.00 0.00 37.37 3.14
5514 5786 3.134623 TGCAGCTTGTGTAGGTAGCATAT 59.865 43.478 0.00 0.00 37.37 1.78
5661 5933 4.458397 ACATGGGTTGAAGCTCATAGATG 58.542 43.478 0.00 0.00 0.00 2.90
6101 6373 7.007456 GCAGCTTAATTTCTGTGATTTTCGTAC 59.993 37.037 0.00 0.00 33.09 3.67
6102 6374 8.230486 CAGCTTAATTTCTGTGATTTTCGTACT 58.770 33.333 0.00 0.00 0.00 2.73
6103 6375 8.443937 AGCTTAATTTCTGTGATTTTCGTACTC 58.556 33.333 0.00 0.00 0.00 2.59
6104 6376 7.692705 GCTTAATTTCTGTGATTTTCGTACTCC 59.307 37.037 0.00 0.00 0.00 3.85
6105 6377 6.496338 AATTTCTGTGATTTTCGTACTCCC 57.504 37.500 0.00 0.00 0.00 4.30
6106 6378 4.884668 TTCTGTGATTTTCGTACTCCCT 57.115 40.909 0.00 0.00 0.00 4.20
6107 6379 4.451629 TCTGTGATTTTCGTACTCCCTC 57.548 45.455 0.00 0.00 0.00 4.30
6108 6380 3.194968 TCTGTGATTTTCGTACTCCCTCC 59.805 47.826 0.00 0.00 0.00 4.30
6109 6381 2.094390 TGTGATTTTCGTACTCCCTCCG 60.094 50.000 0.00 0.00 0.00 4.63
6110 6382 2.094338 GTGATTTTCGTACTCCCTCCGT 60.094 50.000 0.00 0.00 0.00 4.69
6111 6383 2.564062 TGATTTTCGTACTCCCTCCGTT 59.436 45.455 0.00 0.00 0.00 4.44
6112 6384 2.730550 TTTTCGTACTCCCTCCGTTC 57.269 50.000 0.00 0.00 0.00 3.95
6113 6385 0.890683 TTTCGTACTCCCTCCGTTCC 59.109 55.000 0.00 0.00 0.00 3.62
6114 6386 0.251297 TTCGTACTCCCTCCGTTCCA 60.251 55.000 0.00 0.00 0.00 3.53
6115 6387 0.251297 TCGTACTCCCTCCGTTCCAA 60.251 55.000 0.00 0.00 0.00 3.53
6116 6388 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
6117 6389 1.001181 CGTACTCCCTCCGTTCCAAAA 59.999 52.381 0.00 0.00 0.00 2.44
6118 6390 2.354403 CGTACTCCCTCCGTTCCAAAAT 60.354 50.000 0.00 0.00 0.00 1.82
6119 6391 3.119029 CGTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
6120 6392 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6121 6393 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6122 6394 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6123 6395 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6124 6396 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6125 6397 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
6126 6398 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
6127 6399 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
6128 6400 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
6129 6401 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
6130 6402 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
6131 6403 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
6132 6404 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
6133 6405 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
6134 6406 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
6135 6407 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
6136 6408 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
6137 6409 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
6138 6410 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
6145 6417 9.449719 AGATGACCCAACTTTATACTAACTTTG 57.550 33.333 0.00 0.00 0.00 2.77
6146 6418 9.227777 GATGACCCAACTTTATACTAACTTTGT 57.772 33.333 0.00 0.00 0.00 2.83
6148 6420 9.492973 TGACCCAACTTTATACTAACTTTGTAC 57.507 33.333 0.00 0.00 0.00 2.90
6149 6421 9.492973 GACCCAACTTTATACTAACTTTGTACA 57.507 33.333 0.00 0.00 0.00 2.90
6150 6422 9.850198 ACCCAACTTTATACTAACTTTGTACAA 57.150 29.630 3.59 3.59 0.00 2.41
6174 6446 8.970691 AAAATTGAGTCATCTATTTTGGAACG 57.029 30.769 11.47 0.00 44.08 3.95
6175 6447 6.683974 ATTGAGTCATCTATTTTGGAACGG 57.316 37.500 0.00 0.00 0.00 4.44
6176 6448 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
6177 6449 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
6178 6450 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
6179 6451 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
6180 6452 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6181 6453 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6182 6454 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
6183 6455 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
6184 6456 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
6185 6457 3.343941 TTTTGGAACGGAGGGAGTATG 57.656 47.619 0.00 0.00 0.00 2.39
6186 6458 1.946984 TTGGAACGGAGGGAGTATGT 58.053 50.000 0.00 0.00 0.00 2.29
6252 6524 2.430465 ACTGCTTGTGTTGGCTGATAG 58.570 47.619 0.00 0.00 0.00 2.08
6270 6552 6.149129 TGATAGAATCGCTATGACTTGTGT 57.851 37.500 0.00 0.00 39.90 3.72
6275 6557 7.295952 AGAATCGCTATGACTTGTGTTTTAG 57.704 36.000 0.00 0.00 0.00 1.85
6312 6594 3.187227 AGTGCTTTAAGAATGTGTCAGCG 59.813 43.478 0.00 0.00 0.00 5.18
6351 6633 0.607620 TTTTGGGCATAACAGCAGGC 59.392 50.000 0.00 0.00 35.83 4.85
6352 6634 0.251742 TTTGGGCATAACAGCAGGCT 60.252 50.000 0.00 0.00 35.83 4.58
6385 6667 6.759827 GGAGAATTATCGTGGTTAGTGCTTAA 59.240 38.462 0.00 0.00 0.00 1.85
6646 6930 9.750125 GATTAAATGAACATCCAAACTATTCCC 57.250 33.333 0.00 0.00 0.00 3.97
6647 6931 8.893563 TTAAATGAACATCCAAACTATTCCCT 57.106 30.769 0.00 0.00 0.00 4.20
6648 6932 7.797121 AAATGAACATCCAAACTATTCCCTT 57.203 32.000 0.00 0.00 0.00 3.95
6649 6933 7.410120 AATGAACATCCAAACTATTCCCTTC 57.590 36.000 0.00 0.00 0.00 3.46
6650 6934 4.941263 TGAACATCCAAACTATTCCCTTCG 59.059 41.667 0.00 0.00 0.00 3.79
6651 6935 4.569719 ACATCCAAACTATTCCCTTCGT 57.430 40.909 0.00 0.00 0.00 3.85
6652 6936 4.918588 ACATCCAAACTATTCCCTTCGTT 58.081 39.130 0.00 0.00 0.00 3.85
6653 6937 4.941873 ACATCCAAACTATTCCCTTCGTTC 59.058 41.667 0.00 0.00 0.00 3.95
6654 6938 3.946606 TCCAAACTATTCCCTTCGTTCC 58.053 45.455 0.00 0.00 0.00 3.62
6655 6939 3.585732 TCCAAACTATTCCCTTCGTTCCT 59.414 43.478 0.00 0.00 0.00 3.36
6656 6940 4.778958 TCCAAACTATTCCCTTCGTTCCTA 59.221 41.667 0.00 0.00 0.00 2.94
6657 6941 5.248934 TCCAAACTATTCCCTTCGTTCCTAA 59.751 40.000 0.00 0.00 0.00 2.69
6658 6942 5.941647 CCAAACTATTCCCTTCGTTCCTAAA 59.058 40.000 0.00 0.00 0.00 1.85
6659 6943 6.602009 CCAAACTATTCCCTTCGTTCCTAAAT 59.398 38.462 0.00 0.00 0.00 1.40
6660 6944 7.771826 CCAAACTATTCCCTTCGTTCCTAAATA 59.228 37.037 0.00 0.00 0.00 1.40
6661 6945 9.338622 CAAACTATTCCCTTCGTTCCTAAATAT 57.661 33.333 0.00 0.00 0.00 1.28
6667 6951 7.059202 TCCCTTCGTTCCTAAATATAAGTCC 57.941 40.000 0.00 0.00 0.00 3.85
6668 6952 6.842807 TCCCTTCGTTCCTAAATATAAGTCCT 59.157 38.462 0.00 0.00 0.00 3.85
6669 6953 7.346436 TCCCTTCGTTCCTAAATATAAGTCCTT 59.654 37.037 0.00 0.00 0.00 3.36
6670 6954 7.991460 CCCTTCGTTCCTAAATATAAGTCCTTT 59.009 37.037 0.00 0.00 0.00 3.11
6671 6955 9.392259 CCTTCGTTCCTAAATATAAGTCCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
6689 6973 9.620259 AGTCCTTTTAGAGATTTCAATATGGAC 57.380 33.333 0.00 0.00 38.27 4.02
6690 6974 9.620259 GTCCTTTTAGAGATTTCAATATGGACT 57.380 33.333 0.00 0.00 35.99 3.85
6697 6981 8.723942 AGAGATTTCAATATGGACTAACACAC 57.276 34.615 0.00 0.00 0.00 3.82
6698 6982 7.492669 AGAGATTTCAATATGGACTAACACACG 59.507 37.037 0.00 0.00 0.00 4.49
6699 6983 6.538742 AGATTTCAATATGGACTAACACACGG 59.461 38.462 0.00 0.00 0.00 4.94
6700 6984 5.408880 TTCAATATGGACTAACACACGGA 57.591 39.130 0.00 0.00 0.00 4.69
6701 6985 5.607939 TCAATATGGACTAACACACGGAT 57.392 39.130 0.00 0.00 0.00 4.18
6702 6986 5.356426 TCAATATGGACTAACACACGGATG 58.644 41.667 0.00 0.00 0.00 3.51
6703 6987 5.105106 TCAATATGGACTAACACACGGATGT 60.105 40.000 0.00 0.00 40.80 3.06
6704 6988 6.097129 TCAATATGGACTAACACACGGATGTA 59.903 38.462 0.00 0.00 36.72 2.29
6705 6989 6.665992 ATATGGACTAACACACGGATGTAT 57.334 37.500 0.00 0.00 36.72 2.29
6706 6990 7.770366 ATATGGACTAACACACGGATGTATA 57.230 36.000 0.00 0.00 36.72 1.47
6707 6991 6.665992 ATGGACTAACACACGGATGTATAT 57.334 37.500 0.00 0.00 36.72 0.86
6708 6992 7.770366 ATGGACTAACACACGGATGTATATA 57.230 36.000 0.00 0.00 36.72 0.86
6709 6993 7.770366 TGGACTAACACACGGATGTATATAT 57.230 36.000 0.00 0.00 36.72 0.86
6710 6994 8.866970 TGGACTAACACACGGATGTATATATA 57.133 34.615 0.00 0.00 36.72 0.86
6711 6995 9.470399 TGGACTAACACACGGATGTATATATAT 57.530 33.333 0.00 0.00 36.72 0.86
6712 6996 9.731819 GGACTAACACACGGATGTATATATATG 57.268 37.037 5.44 0.00 36.72 1.78
6713 6997 9.234384 GACTAACACACGGATGTATATATATGC 57.766 37.037 5.44 4.69 36.72 3.14
6714 6998 8.745590 ACTAACACACGGATGTATATATATGCA 58.254 33.333 14.81 14.81 36.72 3.96
6715 6999 9.750125 CTAACACACGGATGTATATATATGCAT 57.250 33.333 21.89 21.89 40.86 3.96
6717 7001 9.448438 AACACACGGATGTATATATATGCATTT 57.552 29.630 22.40 11.42 38.78 2.32
6718 7002 9.448438 ACACACGGATGTATATATATGCATTTT 57.552 29.630 22.40 10.68 38.78 1.82
6746 7030 9.507280 GAATGAATACACTCATTTTGTATGTGG 57.493 33.333 0.71 0.00 44.29 4.17
6747 7031 7.994425 TGAATACACTCATTTTGTATGTGGT 57.006 32.000 0.00 0.00 39.58 4.16
6748 7032 8.039603 TGAATACACTCATTTTGTATGTGGTC 57.960 34.615 0.00 0.00 39.58 4.02
6749 7033 7.120579 TGAATACACTCATTTTGTATGTGGTCC 59.879 37.037 0.00 0.00 39.58 4.46
6750 7034 4.724399 ACACTCATTTTGTATGTGGTCCA 58.276 39.130 0.00 0.00 33.44 4.02
6751 7035 5.324409 ACACTCATTTTGTATGTGGTCCAT 58.676 37.500 0.00 0.00 37.58 3.41
6752 7036 6.480763 ACACTCATTTTGTATGTGGTCCATA 58.519 36.000 0.00 0.00 34.86 2.74
6753 7037 7.118723 ACACTCATTTTGTATGTGGTCCATAT 58.881 34.615 6.35 6.35 38.29 1.78
6754 7038 7.615365 ACACTCATTTTGTATGTGGTCCATATT 59.385 33.333 6.41 0.00 38.29 1.28
6755 7039 7.916977 CACTCATTTTGTATGTGGTCCATATTG 59.083 37.037 6.41 0.00 38.29 1.90
6756 7040 7.833682 ACTCATTTTGTATGTGGTCCATATTGA 59.166 33.333 6.41 2.79 38.29 2.57
6757 7041 8.586879 TCATTTTGTATGTGGTCCATATTGAA 57.413 30.769 6.41 0.00 38.29 2.69
6758 7042 9.029368 TCATTTTGTATGTGGTCCATATTGAAA 57.971 29.630 6.41 6.37 38.29 2.69
6759 7043 9.820725 CATTTTGTATGTGGTCCATATTGAAAT 57.179 29.630 6.41 8.11 38.29 2.17
6761 7045 8.821686 TTTGTATGTGGTCCATATTGAAATCT 57.178 30.769 6.41 0.00 38.29 2.40
6762 7046 9.913310 TTTGTATGTGGTCCATATTGAAATCTA 57.087 29.630 6.41 0.00 38.29 1.98
6790 7074 7.611213 AATGACTTGTATTTAGAAACGGAGG 57.389 36.000 0.00 0.00 0.00 4.30
6791 7075 5.484715 TGACTTGTATTTAGAAACGGAGGG 58.515 41.667 0.00 0.00 0.00 4.30
6792 7076 5.246656 TGACTTGTATTTAGAAACGGAGGGA 59.753 40.000 0.00 0.00 0.00 4.20
6793 7077 5.731591 ACTTGTATTTAGAAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
6796 7080 6.461110 TGTATTTAGAAACGGAGGGAGTAG 57.539 41.667 0.00 0.00 0.00 2.57
6804 7088 2.599677 ACGGAGGGAGTAGATCATTCC 58.400 52.381 0.00 0.00 32.20 3.01
6833 7117 7.973048 TTACAATAGACTCCTATGAACACCT 57.027 36.000 0.00 0.00 35.84 4.00
6871 7155 0.959553 ATGTTGTCGGACTCGTCACT 59.040 50.000 9.88 0.00 34.54 3.41
6895 7179 2.383527 CGCCGAGCTCAACCTTGTC 61.384 63.158 15.40 0.00 0.00 3.18
6897 7181 1.006102 CCGAGCTCAACCTTGTCGT 60.006 57.895 15.40 0.00 0.00 4.34
6915 7199 2.337361 TCGAACTCGAGCTTGACCA 58.663 52.632 13.61 0.00 44.22 4.02
6917 7201 0.318699 CGAACTCGAGCTTGACCACA 60.319 55.000 13.61 0.00 43.02 4.17
6918 7202 1.140816 GAACTCGAGCTTGACCACAC 58.859 55.000 13.61 0.00 0.00 3.82
6919 7203 0.249911 AACTCGAGCTTGACCACACC 60.250 55.000 13.61 0.00 0.00 4.16
6920 7204 1.734477 CTCGAGCTTGACCACACCG 60.734 63.158 0.00 0.00 0.00 4.94
6921 7205 2.738521 CGAGCTTGACCACACCGG 60.739 66.667 0.00 0.00 42.50 5.28
6922 7206 2.741092 GAGCTTGACCACACCGGA 59.259 61.111 9.46 0.00 38.63 5.14
6923 7207 1.374758 GAGCTTGACCACACCGGAG 60.375 63.158 9.46 1.26 38.63 4.63
6936 7220 4.047125 CGGAGGGGCCAACCACAT 62.047 66.667 4.39 0.00 44.59 3.21
6949 7233 1.059098 ACCACATCCTCTGTCTTGCA 58.941 50.000 0.00 0.00 35.29 4.08
6980 7279 4.660771 TCCCTCTTTCAGAAGAACTCCTTT 59.339 41.667 0.00 0.00 41.19 3.11
6983 7282 4.137543 TCTTTCAGAAGAACTCCTTTGCC 58.862 43.478 0.00 0.00 38.91 4.52
6992 7291 0.694771 ACTCCTTTGCCTGCATGAGA 59.305 50.000 16.06 3.99 0.00 3.27
7023 7322 1.361668 CCTCGTGAACCTTGCCATCG 61.362 60.000 0.00 0.00 0.00 3.84
7025 7324 2.034879 CGTGAACCTTGCCATCGCT 61.035 57.895 0.00 0.00 35.36 4.93
7033 7332 1.783031 CTTGCCATCGCTGCCTCATC 61.783 60.000 0.00 0.00 35.36 2.92
7035 7334 3.344215 CCATCGCTGCCTCATCGC 61.344 66.667 0.00 0.00 0.00 4.58
7039 7338 0.745845 ATCGCTGCCTCATCGCTTTT 60.746 50.000 0.00 0.00 0.00 2.27
7045 7344 0.678048 GCCTCATCGCTTTTCCTGGT 60.678 55.000 0.00 0.00 0.00 4.00
7053 7352 0.110486 GCTTTTCCTGGTGTCCCTCA 59.890 55.000 0.00 0.00 0.00 3.86
7057 7356 1.518367 TTCCTGGTGTCCCTCAACTT 58.482 50.000 0.00 0.00 34.34 2.66
7083 7382 1.351017 TGATGCGGGTCTTCCTCTTTT 59.649 47.619 0.00 0.00 0.00 2.27
7089 7388 1.073444 GGGTCTTCCTCTTTTTCGGGT 59.927 52.381 0.00 0.00 0.00 5.28
7103 7402 1.608336 CGGGTGGGACTCACTGGTA 60.608 63.158 5.23 0.00 45.38 3.25
7132 7436 3.545124 AACTTCACATCCGCCCGCA 62.545 57.895 0.00 0.00 0.00 5.69
7134 7438 1.227527 CTTCACATCCGCCCGCATA 60.228 57.895 0.00 0.00 0.00 3.14
7137 7441 1.301637 CACATCCGCCCGCATATCA 60.302 57.895 0.00 0.00 0.00 2.15
7154 7458 5.008415 GCATATCAATCACCAGGAAGTTGAG 59.992 44.000 0.00 0.00 32.93 3.02
7161 7465 0.671781 CCAGGAAGTTGAGCTCGTGG 60.672 60.000 9.64 2.43 32.89 4.94
7165 7469 1.891060 GAAGTTGAGCTCGTGGCACG 61.891 60.000 32.75 32.75 44.79 5.34
7187 7491 2.581354 GCTGAGCCTCCACACGAT 59.419 61.111 0.00 0.00 0.00 3.73
7194 7498 0.108186 GCCTCCACACGATGATGTCA 60.108 55.000 0.00 0.00 0.00 3.58
7217 7521 3.204827 GCGTGCGGCCATCTTCAT 61.205 61.111 2.24 0.00 34.80 2.57
7218 7522 2.764314 GCGTGCGGCCATCTTCATT 61.764 57.895 2.24 0.00 34.80 2.57
7242 7546 0.532862 CGAAGGTGCCGAGCCAATAT 60.533 55.000 0.00 0.00 0.00 1.28
7243 7547 1.230324 GAAGGTGCCGAGCCAATATC 58.770 55.000 0.00 0.00 0.00 1.63
7244 7548 0.546122 AAGGTGCCGAGCCAATATCA 59.454 50.000 0.00 0.00 0.00 2.15
7254 7558 1.626654 GCCAATATCATCGGCCGTCG 61.627 60.000 27.15 17.54 40.07 5.12
7256 7560 0.943835 CAATATCATCGGCCGTCGCA 60.944 55.000 27.15 5.72 39.05 5.10
7257 7561 0.037326 AATATCATCGGCCGTCGCAT 60.037 50.000 27.15 15.06 39.05 4.73
7260 7564 3.940640 CATCGGCCGTCGCATTGG 61.941 66.667 27.15 2.96 39.05 3.16
7265 7569 2.332654 GGCCGTCGCATTGGAACTT 61.333 57.895 0.00 0.00 36.38 2.66
7276 7580 4.309099 GCATTGGAACTTGATGCTGAAAA 58.691 39.130 0.00 0.00 42.12 2.29
7277 7581 4.751098 GCATTGGAACTTGATGCTGAAAAA 59.249 37.500 0.00 0.00 42.12 1.94
7278 7582 5.333568 GCATTGGAACTTGATGCTGAAAAAC 60.334 40.000 0.00 0.00 42.12 2.43
7279 7583 3.963665 TGGAACTTGATGCTGAAAAACG 58.036 40.909 0.00 0.00 0.00 3.60
7280 7584 3.243367 TGGAACTTGATGCTGAAAAACGG 60.243 43.478 0.00 0.00 0.00 4.44
7288 7592 0.586802 GCTGAAAAACGGCGAACTCT 59.413 50.000 16.62 0.00 41.21 3.24
7289 7593 1.398578 GCTGAAAAACGGCGAACTCTC 60.399 52.381 16.62 3.80 41.21 3.20
7299 7603 3.425578 CGAACTCTCGTGGCTGAAT 57.574 52.632 0.00 0.00 40.33 2.57
7302 7606 1.016130 AACTCTCGTGGCTGAATGCG 61.016 55.000 0.00 0.00 44.05 4.73
7303 7607 2.125552 TCTCGTGGCTGAATGCGG 60.126 61.111 0.00 0.00 44.05 5.69
7323 7627 1.079127 GGCAGCCGAACTTGCTCTA 60.079 57.895 0.00 0.00 36.81 2.43
7330 7634 0.435008 CGAACTTGCTCTACACACGC 59.565 55.000 0.00 0.00 0.00 5.34
7333 7637 2.240493 ACTTGCTCTACACACGCTTT 57.760 45.000 0.00 0.00 0.00 3.51
7338 7642 1.060713 CTCTACACACGCTTTGACGG 58.939 55.000 0.00 0.00 37.37 4.79
7360 7664 2.502510 CGGCAGATGCAACGCAAC 60.503 61.111 7.19 0.00 43.62 4.17
7361 7665 2.502510 GGCAGATGCAACGCAACG 60.503 61.111 7.19 0.00 43.62 4.10
7363 7667 1.793613 GCAGATGCAACGCAACGAC 60.794 57.895 0.00 0.00 43.62 4.34
7364 7668 1.569003 CAGATGCAACGCAACGACA 59.431 52.632 0.00 0.00 43.62 4.35
7365 7669 0.451628 CAGATGCAACGCAACGACAG 60.452 55.000 0.00 0.00 43.62 3.51
7366 7670 0.880278 AGATGCAACGCAACGACAGT 60.880 50.000 0.00 0.00 43.62 3.55
7367 7671 0.722469 GATGCAACGCAACGACAGTG 60.722 55.000 0.00 0.00 43.62 3.66
7368 7672 1.436195 ATGCAACGCAACGACAGTGT 61.436 50.000 0.00 0.00 43.62 3.55
7369 7673 0.806492 TGCAACGCAACGACAGTGTA 60.806 50.000 0.00 0.00 34.76 2.90
7371 7675 1.267632 GCAACGCAACGACAGTGTAAA 60.268 47.619 0.00 0.00 0.00 2.01
7372 7676 2.601266 GCAACGCAACGACAGTGTAAAT 60.601 45.455 0.00 0.00 0.00 1.40
7374 7678 3.515071 ACGCAACGACAGTGTAAATTC 57.485 42.857 0.00 0.00 0.00 2.17
7375 7679 2.097104 ACGCAACGACAGTGTAAATTCG 60.097 45.455 0.00 0.00 37.50 3.34
7376 7680 2.097104 CGCAACGACAGTGTAAATTCGT 60.097 45.455 0.00 0.00 46.26 3.85
7377 7681 3.466836 GCAACGACAGTGTAAATTCGTC 58.533 45.455 7.32 0.00 43.64 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.510038 ACATGGCTTCAAGCTTTTGTAG 57.490 40.909 9.83 0.00 41.99 2.74
79 80 4.406456 ACAGGACAATTACATGGCTTCAA 58.594 39.130 0.00 0.00 0.00 2.69
80 81 4.032960 ACAGGACAATTACATGGCTTCA 57.967 40.909 0.00 0.00 0.00 3.02
110 111 7.701924 CCGTTGAGCAATGTCACAAATAATAAT 59.298 33.333 2.16 0.00 0.00 1.28
111 112 7.026562 CCGTTGAGCAATGTCACAAATAATAA 58.973 34.615 2.16 0.00 0.00 1.40
112 113 6.550843 CCGTTGAGCAATGTCACAAATAATA 58.449 36.000 2.16 0.00 0.00 0.98
113 114 5.401550 CCGTTGAGCAATGTCACAAATAAT 58.598 37.500 2.16 0.00 0.00 1.28
123 284 1.453155 CCTTAGCCGTTGAGCAATGT 58.547 50.000 2.16 0.00 34.23 2.71
182 345 7.042335 GCGCCTCAATTATATTCCTATACAGT 58.958 38.462 0.00 0.00 0.00 3.55
186 349 8.414003 CACTAGCGCCTCAATTATATTCCTATA 58.586 37.037 2.29 0.00 0.00 1.31
205 368 2.163818 TTCACAGGTTTCCACTAGCG 57.836 50.000 0.00 0.00 0.00 4.26
212 375 6.381801 CATGTTTCTACATTCACAGGTTTCC 58.618 40.000 0.00 0.00 42.29 3.13
220 383 7.928908 TTTCTTTGCATGTTTCTACATTCAC 57.071 32.000 0.00 0.00 42.29 3.18
249 413 4.647611 TCCCACGAACATAACAGTTCAAT 58.352 39.130 7.49 0.00 46.32 2.57
257 421 4.276431 TGTTTCCTTTCCCACGAACATAAC 59.724 41.667 0.00 0.00 0.00 1.89
260 424 2.938838 TGTTTCCTTTCCCACGAACAT 58.061 42.857 0.00 0.00 0.00 2.71
284 448 2.492088 GGGTCCTGTTTTTCTACATGGC 59.508 50.000 0.00 0.00 0.00 4.40
290 454 5.450453 TGATTGTTGGGTCCTGTTTTTCTA 58.550 37.500 0.00 0.00 0.00 2.10
298 462 4.588899 TGTATTCTGATTGTTGGGTCCTG 58.411 43.478 0.00 0.00 0.00 3.86
299 463 4.927267 TGTATTCTGATTGTTGGGTCCT 57.073 40.909 0.00 0.00 0.00 3.85
300 464 5.418840 ACATTGTATTCTGATTGTTGGGTCC 59.581 40.000 0.00 0.00 0.00 4.46
337 501 2.485426 ACAGAAAGTTCATGCATGACCG 59.515 45.455 28.72 11.83 36.36 4.79
338 502 3.755378 AGACAGAAAGTTCATGCATGACC 59.245 43.478 28.72 22.24 36.36 4.02
344 508 2.802816 ACACGAGACAGAAAGTTCATGC 59.197 45.455 0.00 0.00 0.00 4.06
345 509 4.271049 ACAACACGAGACAGAAAGTTCATG 59.729 41.667 0.00 0.00 0.00 3.07
357 521 1.668151 GAGGCCCACAACACGAGAC 60.668 63.158 0.00 0.00 0.00 3.36
362 526 0.751643 ACAGTTGAGGCCCACAACAC 60.752 55.000 31.16 16.13 46.58 3.32
392 556 2.046864 CGGAGTCTCGAGGCCAAGA 61.047 63.158 14.69 2.11 0.00 3.02
404 568 0.799393 GCTCTTTTTCTGGCGGAGTC 59.201 55.000 0.00 0.00 0.00 3.36
423 587 5.335127 GGAAAATCAAACATCCATCGTGAG 58.665 41.667 0.00 0.00 32.08 3.51
444 608 1.290955 CGGCCTGTACTTTCACGGA 59.709 57.895 0.00 0.00 0.00 4.69
458 622 0.107165 ATAGGAAGGTTTCTGCGGCC 60.107 55.000 0.00 0.00 0.00 6.13
461 625 6.677781 TTATTTCATAGGAAGGTTTCTGCG 57.322 37.500 0.00 0.00 33.82 5.18
489 653 2.866156 GTTTGGTTTGCAGGAAAGAAGC 59.134 45.455 0.00 0.00 0.00 3.86
569 734 0.947180 GTAGGCTGCGTTCGGTTTGA 60.947 55.000 0.00 0.00 0.00 2.69
588 753 6.080406 CGCTGCTAGTAAAAGAAAAAGAAGG 58.920 40.000 0.00 0.00 0.00 3.46
589 754 6.073222 TCCGCTGCTAGTAAAAGAAAAAGAAG 60.073 38.462 0.00 0.00 0.00 2.85
592 757 5.408604 TCTCCGCTGCTAGTAAAAGAAAAAG 59.591 40.000 0.00 0.00 0.00 2.27
732 898 4.548457 GCGTTTAGCTACATTGTTTCGTTC 59.452 41.667 0.00 0.00 44.04 3.95
817 990 1.820519 ACATTCCATGTGCCATGACAC 59.179 47.619 5.03 5.03 43.01 3.67
830 1003 1.475034 GCTCGATGGCCTAACATTCCA 60.475 52.381 3.32 0.00 0.00 3.53
831 1004 1.230324 GCTCGATGGCCTAACATTCC 58.770 55.000 3.32 0.00 0.00 3.01
1020 1195 1.892862 CTCCTCCGCGTAGTCCGAT 60.893 63.158 4.92 0.00 39.56 4.18
1250 1425 1.368950 GGCTCATATCAGCAGCCGA 59.631 57.895 0.00 0.00 43.35 5.54
1282 1457 1.180456 TCCGAGCCTAAACACGGACA 61.180 55.000 0.00 0.00 45.87 4.02
1624 1807 3.317455 TCGTATACTAGGCCCTCCAAA 57.683 47.619 0.00 0.00 33.74 3.28
1689 1872 5.793763 TGGGGTAGAAGAAAAGGGAGAAATA 59.206 40.000 0.00 0.00 0.00 1.40
1823 2006 3.707102 CCCCTCGTCTTCTAATTCCTTCT 59.293 47.826 0.00 0.00 0.00 2.85
1899 2083 3.068448 TCGCCAATTGCATGCATCTAATT 59.932 39.130 23.37 15.21 41.33 1.40
1906 2090 0.317799 AGTTTCGCCAATTGCATGCA 59.682 45.000 18.46 18.46 41.33 3.96
2000 2184 3.314357 GGTCAAACTTAGAAAGCGTTGGT 59.686 43.478 0.00 0.00 31.31 3.67
2001 2185 3.314080 TGGTCAAACTTAGAAAGCGTTGG 59.686 43.478 0.00 0.00 31.31 3.77
2005 2189 5.519722 ACATTTGGTCAAACTTAGAAAGCG 58.480 37.500 0.00 0.00 32.51 4.68
2332 2517 6.162777 CCGTCCAAATTAATCCAAAACACAT 58.837 36.000 0.00 0.00 0.00 3.21
2373 2558 1.697432 TGGGTTCCGAGACAAACTGAT 59.303 47.619 0.00 0.00 0.00 2.90
2414 2599 7.497595 TCAGGTATTGTTTCTATAAGCGATGT 58.502 34.615 0.00 0.00 0.00 3.06
2418 2603 7.657761 AGGAATCAGGTATTGTTTCTATAAGCG 59.342 37.037 0.00 0.00 36.29 4.68
2459 2644 4.519730 ACGTGCTATATAGAACTCCTCCAC 59.480 45.833 17.25 10.00 29.21 4.02
2461 2646 5.617308 CGAACGTGCTATATAGAACTCCTCC 60.617 48.000 17.25 3.41 29.21 4.30
2474 2659 4.331443 TGAAACATATTGCGAACGTGCTAT 59.669 37.500 0.00 0.00 34.71 2.97
2548 2733 2.034305 GCATTAAATGGCTCCTGCAGAG 59.966 50.000 17.39 11.85 46.29 3.35
2727 2913 3.692690 TGGTCCTACATTAAGGGTTTGC 58.307 45.455 0.00 0.00 37.24 3.68
2807 2993 5.823861 TGGACAGCTGGATATGCTTATTA 57.176 39.130 19.93 0.00 38.92 0.98
3110 3296 1.202651 CCAACACCTCTCACTTTCCGT 60.203 52.381 0.00 0.00 0.00 4.69
3230 3416 9.236006 GCATTCAGAAATATGGGTACATTAGAT 57.764 33.333 0.00 0.00 38.53 1.98
3231 3417 8.439971 AGCATTCAGAAATATGGGTACATTAGA 58.560 33.333 0.00 0.00 38.53 2.10
3232 3418 8.509690 CAGCATTCAGAAATATGGGTACATTAG 58.490 37.037 0.00 0.00 38.53 1.73
3233 3419 8.217111 TCAGCATTCAGAAATATGGGTACATTA 58.783 33.333 0.00 0.00 38.53 1.90
3234 3420 7.013655 GTCAGCATTCAGAAATATGGGTACATT 59.986 37.037 0.00 0.00 38.53 2.71
3235 3421 6.488006 GTCAGCATTCAGAAATATGGGTACAT 59.512 38.462 0.00 0.00 41.13 2.29
3236 3422 5.822519 GTCAGCATTCAGAAATATGGGTACA 59.177 40.000 0.00 0.00 0.00 2.90
3237 3423 5.822519 TGTCAGCATTCAGAAATATGGGTAC 59.177 40.000 0.00 0.00 0.00 3.34
3238 3424 5.822519 GTGTCAGCATTCAGAAATATGGGTA 59.177 40.000 0.00 0.00 0.00 3.69
3384 3640 7.642071 TTACGTAGATGAAACAAAGGTACAC 57.358 36.000 0.00 0.00 0.00 2.90
3412 3668 2.622064 ATCAAGCAGGGTATCGTTCC 57.378 50.000 0.00 0.00 0.00 3.62
3417 3673 7.775093 TGCCATATAATAATCAAGCAGGGTATC 59.225 37.037 0.00 0.00 0.00 2.24
3674 3930 4.188247 TCCAACTAGTTCAAGGACATCG 57.812 45.455 4.77 0.00 0.00 3.84
3945 4201 6.651755 AAAGGAAATAAAATCAATGCGCAG 57.348 33.333 18.32 2.56 0.00 5.18
3960 4217 9.914131 GTTCAGCTTTGAACTATTAAAGGAAAT 57.086 29.630 10.69 0.00 43.38 2.17
3976 4233 5.625311 GGAACGTTAAATCAGTTCAGCTTTG 59.375 40.000 0.00 0.00 44.20 2.77
3987 4244 2.640826 ACCCCAGAGGAACGTTAAATCA 59.359 45.455 0.00 0.00 39.89 2.57
4048 4305 7.554835 TGAGAAACAGTAAGCAAAAACTAGGAA 59.445 33.333 0.00 0.00 0.00 3.36
4118 4375 7.184800 TGCATTAGGTAATAATTACGTGCTG 57.815 36.000 0.00 0.00 37.00 4.41
4330 4593 5.170021 CAAAAGCCAATGCACAATAAGCTA 58.830 37.500 0.00 0.00 41.13 3.32
4421 4684 7.975616 GGTTGCATCTAAATTTGAGCATAGAAA 59.024 33.333 0.00 0.00 0.00 2.52
4426 4689 5.927281 AGGTTGCATCTAAATTTGAGCAT 57.073 34.783 0.00 0.00 0.00 3.79
4461 4724 5.048921 CAGGAGCCATTACAGCAGAATATTG 60.049 44.000 0.00 0.00 0.00 1.90
4475 4738 2.291153 ACATAGCAACACAGGAGCCATT 60.291 45.455 0.00 0.00 0.00 3.16
4523 4786 5.635280 GGTCACGATTGATGGTCTATACATG 59.365 44.000 0.00 0.00 33.11 3.21
4660 4923 6.692486 AGATTATATTGAAGAGGTACCGCAG 58.308 40.000 18.53 0.00 0.00 5.18
4664 4927 7.455008 TCCCAGAGATTATATTGAAGAGGTACC 59.545 40.741 2.73 2.73 0.00 3.34
4864 5127 9.852091 AGTACAACTACATAACTTACTAACTGC 57.148 33.333 0.00 0.00 0.00 4.40
4875 5138 6.525976 GTCGGTTCTGAGTACAACTACATAAC 59.474 42.308 0.00 0.00 0.00 1.89
4886 5149 3.008330 TCTAGCAGTCGGTTCTGAGTAC 58.992 50.000 7.21 0.00 37.61 2.73
4927 5190 8.021396 GGATTTAGTCCATTGTAGTTGACAAAC 58.979 37.037 0.00 0.00 44.77 2.93
4963 5231 7.478520 AACTGCGGTATATTGTAATGTCTTC 57.521 36.000 0.00 0.00 0.00 2.87
4994 5262 6.919721 TCTGTTCACAGGGCATTATAAAAAC 58.080 36.000 7.11 0.00 43.91 2.43
5046 5314 7.125507 CCCAGTATCTGCCATTCTTCTCTATAT 59.874 40.741 0.00 0.00 0.00 0.86
5091 5359 4.931661 AATGGCAGATAATTGCAAGGAG 57.068 40.909 4.94 0.00 45.86 3.69
5215 5487 3.990369 ACACCTACCAGAATACCAGCTA 58.010 45.455 0.00 0.00 0.00 3.32
5233 5505 9.180678 CAAAACAAACTGATGGTAGATTAACAC 57.819 33.333 0.00 0.00 0.00 3.32
5257 5529 8.870160 GCATCCTGCAATAAATACATAAACAA 57.130 30.769 0.00 0.00 44.26 2.83
5332 5604 7.542890 TGACTTCATTAACACAGAAGCAAAAA 58.457 30.769 0.00 0.00 41.80 1.94
5470 5742 6.931281 TGCAGTATCAGCTTATACATTCCTTC 59.069 38.462 18.02 2.57 35.23 3.46
5513 5785 7.331934 GTGTGTACAACTCATCAGAATGTACAT 59.668 37.037 17.60 1.41 46.22 2.29
5514 5786 6.645003 GTGTGTACAACTCATCAGAATGTACA 59.355 38.462 13.12 13.12 44.67 2.90
5599 5871 7.892771 ACAGATATATCTACTCTCTCAATGCCA 59.107 37.037 14.92 0.00 34.85 4.92
5661 5933 2.798976 TGGCACATTGCTTTTCTGAC 57.201 45.000 0.00 0.00 44.28 3.51
6101 6373 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6102 6374 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6103 6375 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
6104 6376 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
6105 6377 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
6106 6378 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
6107 6379 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
6108 6380 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
6109 6381 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
6110 6382 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
6111 6383 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
6112 6384 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
6119 6391 9.449719 CAAAGTTAGTATAAAGTTGGGTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
6120 6392 9.227777 ACAAAGTTAGTATAAAGTTGGGTCATC 57.772 33.333 0.00 0.00 0.00 2.92
6122 6394 9.492973 GTACAAAGTTAGTATAAAGTTGGGTCA 57.507 33.333 0.00 0.00 0.00 4.02
6123 6395 9.492973 TGTACAAAGTTAGTATAAAGTTGGGTC 57.507 33.333 0.00 0.00 0.00 4.46
6124 6396 9.850198 TTGTACAAAGTTAGTATAAAGTTGGGT 57.150 29.630 5.64 0.00 0.00 4.51
6147 6419 9.696917 GTTCCAAAATAGATGACTCAATTTTGT 57.303 29.630 18.01 0.00 43.14 2.83
6148 6420 8.853345 CGTTCCAAAATAGATGACTCAATTTTG 58.147 33.333 15.00 15.00 43.77 2.44
6149 6421 8.028938 CCGTTCCAAAATAGATGACTCAATTTT 58.971 33.333 0.00 0.00 33.07 1.82
6150 6422 7.393234 TCCGTTCCAAAATAGATGACTCAATTT 59.607 33.333 0.00 0.00 0.00 1.82
6151 6423 6.884295 TCCGTTCCAAAATAGATGACTCAATT 59.116 34.615 0.00 0.00 0.00 2.32
6152 6424 6.414732 TCCGTTCCAAAATAGATGACTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
6153 6425 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
6154 6426 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
6155 6427 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
6156 6428 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
6157 6429 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
6158 6430 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6159 6431 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6160 6432 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6161 6433 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6162 6434 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6163 6435 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
6164 6436 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
6165 6437 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
6166 6438 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
6167 6439 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
6168 6440 2.024655 AGTACATACTCCCTCCGTTCCA 60.025 50.000 0.00 0.00 0.00 3.53
6169 6441 2.664015 AGTACATACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
6170 6442 4.081807 ACAAAGTACATACTCCCTCCGTTC 60.082 45.833 0.00 0.00 34.99 3.95
6171 6443 3.836562 ACAAAGTACATACTCCCTCCGTT 59.163 43.478 0.00 0.00 34.99 4.44
6172 6444 3.438183 ACAAAGTACATACTCCCTCCGT 58.562 45.455 0.00 0.00 34.99 4.69
6173 6445 3.446161 TGACAAAGTACATACTCCCTCCG 59.554 47.826 0.00 0.00 34.99 4.63
6174 6446 5.360591 CATGACAAAGTACATACTCCCTCC 58.639 45.833 0.00 0.00 34.99 4.30
6175 6447 5.128827 TCCATGACAAAGTACATACTCCCTC 59.871 44.000 0.00 0.00 34.99 4.30
6176 6448 5.030147 TCCATGACAAAGTACATACTCCCT 58.970 41.667 0.00 0.00 34.99 4.20
6177 6449 5.353394 TCCATGACAAAGTACATACTCCC 57.647 43.478 0.00 0.00 34.99 4.30
6178 6450 6.313905 CAGTTCCATGACAAAGTACATACTCC 59.686 42.308 0.00 0.00 34.99 3.85
6179 6451 6.874134 ACAGTTCCATGACAAAGTACATACTC 59.126 38.462 0.00 0.00 34.99 2.59
6180 6452 6.650807 CACAGTTCCATGACAAAGTACATACT 59.349 38.462 0.00 0.00 38.39 2.12
6181 6453 6.426937 ACACAGTTCCATGACAAAGTACATAC 59.573 38.462 0.00 0.00 0.00 2.39
6182 6454 6.530120 ACACAGTTCCATGACAAAGTACATA 58.470 36.000 0.00 0.00 0.00 2.29
6183 6455 5.376625 ACACAGTTCCATGACAAAGTACAT 58.623 37.500 0.00 0.00 0.00 2.29
6184 6456 4.776349 ACACAGTTCCATGACAAAGTACA 58.224 39.130 0.00 0.00 0.00 2.90
6185 6457 5.505654 CCAACACAGTTCCATGACAAAGTAC 60.506 44.000 0.00 0.00 0.00 2.73
6186 6458 4.578516 CCAACACAGTTCCATGACAAAGTA 59.421 41.667 0.00 0.00 0.00 2.24
6252 6524 6.312918 TCCTAAAACACAAGTCATAGCGATTC 59.687 38.462 0.00 0.00 0.00 2.52
6270 6552 5.695816 GCACTTCAAACATGCATTCCTAAAA 59.304 36.000 0.00 0.00 39.23 1.52
6275 6557 3.308438 AGCACTTCAAACATGCATTCC 57.692 42.857 0.00 0.00 41.97 3.01
6312 6594 5.989551 AAAATTTGTGGTTCATGCTCAAC 57.010 34.783 0.00 0.00 0.00 3.18
6351 6633 4.445718 CCACGATAATTCTCCATCGAACAG 59.554 45.833 13.75 3.03 45.32 3.16
6352 6634 4.142026 ACCACGATAATTCTCCATCGAACA 60.142 41.667 13.75 0.00 45.32 3.18
6470 6752 8.922931 ATTTTCAATTGCCCTAAGTCATTTTT 57.077 26.923 0.00 0.00 0.00 1.94
6559 6842 7.487484 TGAAGTGAACTATGCAATGTTTGAAA 58.513 30.769 8.70 0.00 0.00 2.69
6642 6926 7.346436 AGGACTTATATTTAGGAACGAAGGGAA 59.654 37.037 0.00 0.00 0.00 3.97
6643 6927 6.842807 AGGACTTATATTTAGGAACGAAGGGA 59.157 38.462 0.00 0.00 0.00 4.20
6644 6928 7.063934 AGGACTTATATTTAGGAACGAAGGG 57.936 40.000 0.00 0.00 0.00 3.95
6645 6929 8.959705 AAAGGACTTATATTTAGGAACGAAGG 57.040 34.615 0.00 0.00 0.00 3.46
6663 6947 9.620259 GTCCATATTGAAATCTCTAAAAGGACT 57.380 33.333 0.00 0.00 37.06 3.85
6664 6948 9.620259 AGTCCATATTGAAATCTCTAAAAGGAC 57.380 33.333 0.00 0.00 39.53 3.85
6671 6955 9.817809 GTGTGTTAGTCCATATTGAAATCTCTA 57.182 33.333 0.00 0.00 0.00 2.43
6672 6956 7.492669 CGTGTGTTAGTCCATATTGAAATCTCT 59.507 37.037 0.00 0.00 0.00 3.10
6673 6957 7.254455 CCGTGTGTTAGTCCATATTGAAATCTC 60.254 40.741 0.00 0.00 0.00 2.75
6674 6958 6.538742 CCGTGTGTTAGTCCATATTGAAATCT 59.461 38.462 0.00 0.00 0.00 2.40
6675 6959 6.537301 TCCGTGTGTTAGTCCATATTGAAATC 59.463 38.462 0.00 0.00 0.00 2.17
6676 6960 6.411376 TCCGTGTGTTAGTCCATATTGAAAT 58.589 36.000 0.00 0.00 0.00 2.17
6677 6961 5.795972 TCCGTGTGTTAGTCCATATTGAAA 58.204 37.500 0.00 0.00 0.00 2.69
6678 6962 5.408880 TCCGTGTGTTAGTCCATATTGAA 57.591 39.130 0.00 0.00 0.00 2.69
6679 6963 5.105106 ACATCCGTGTGTTAGTCCATATTGA 60.105 40.000 0.00 0.00 37.14 2.57
6680 6964 5.116180 ACATCCGTGTGTTAGTCCATATTG 58.884 41.667 0.00 0.00 37.14 1.90
6681 6965 5.353394 ACATCCGTGTGTTAGTCCATATT 57.647 39.130 0.00 0.00 37.14 1.28
6682 6966 6.665992 ATACATCCGTGTGTTAGTCCATAT 57.334 37.500 0.00 0.00 39.39 1.78
6683 6967 7.770366 ATATACATCCGTGTGTTAGTCCATA 57.230 36.000 0.00 0.00 39.39 2.74
6684 6968 6.665992 ATATACATCCGTGTGTTAGTCCAT 57.334 37.500 0.00 0.00 39.39 3.41
6685 6969 7.770366 ATATATACATCCGTGTGTTAGTCCA 57.230 36.000 0.00 0.00 39.39 4.02
6686 6970 9.731819 CATATATATACATCCGTGTGTTAGTCC 57.268 37.037 0.00 0.00 39.39 3.85
6687 6971 9.234384 GCATATATATACATCCGTGTGTTAGTC 57.766 37.037 0.00 0.00 39.39 2.59
6688 6972 8.745590 TGCATATATATACATCCGTGTGTTAGT 58.254 33.333 0.00 0.00 39.39 2.24
6689 6973 9.750125 ATGCATATATATACATCCGTGTGTTAG 57.250 33.333 0.00 0.00 39.39 2.34
6691 6975 9.448438 AAATGCATATATATACATCCGTGTGTT 57.552 29.630 8.59 0.00 39.39 3.32
6692 6976 9.448438 AAAATGCATATATATACATCCGTGTGT 57.552 29.630 8.59 0.00 39.39 3.72
6720 7004 9.507280 CCACATACAAAATGAGTGTATTCATTC 57.493 33.333 3.54 0.00 44.74 2.67
6721 7005 9.023962 ACCACATACAAAATGAGTGTATTCATT 57.976 29.630 0.00 0.00 46.81 2.57
6722 7006 8.579850 ACCACATACAAAATGAGTGTATTCAT 57.420 30.769 0.00 0.00 39.60 2.57
6723 7007 7.120579 GGACCACATACAAAATGAGTGTATTCA 59.879 37.037 0.00 0.00 39.60 2.57
6724 7008 7.120579 TGGACCACATACAAAATGAGTGTATTC 59.879 37.037 0.00 0.00 39.60 1.75
6725 7009 6.945435 TGGACCACATACAAAATGAGTGTATT 59.055 34.615 0.00 0.00 39.60 1.89
6726 7010 6.480763 TGGACCACATACAAAATGAGTGTAT 58.519 36.000 0.00 0.00 41.76 2.29
6727 7011 5.870706 TGGACCACATACAAAATGAGTGTA 58.129 37.500 0.00 0.00 35.98 2.90
6728 7012 4.724399 TGGACCACATACAAAATGAGTGT 58.276 39.130 0.00 0.00 0.00 3.55
6729 7013 5.902613 ATGGACCACATACAAAATGAGTG 57.097 39.130 0.00 0.00 38.26 3.51
6730 7014 7.833682 TCAATATGGACCACATACAAAATGAGT 59.166 33.333 0.00 0.00 44.41 3.41
6731 7015 8.224389 TCAATATGGACCACATACAAAATGAG 57.776 34.615 0.00 0.00 44.41 2.90
6732 7016 8.586879 TTCAATATGGACCACATACAAAATGA 57.413 30.769 0.00 0.00 44.41 2.57
6733 7017 9.820725 ATTTCAATATGGACCACATACAAAATG 57.179 29.630 0.00 0.00 44.41 2.32
6735 7019 9.253832 AGATTTCAATATGGACCACATACAAAA 57.746 29.630 0.00 0.00 44.41 2.44
6736 7020 8.821686 AGATTTCAATATGGACCACATACAAA 57.178 30.769 0.00 0.00 44.41 2.83
6764 7048 8.512138 CCTCCGTTTCTAAATACAAGTCATTTT 58.488 33.333 0.00 0.00 0.00 1.82
6765 7049 7.120726 CCCTCCGTTTCTAAATACAAGTCATTT 59.879 37.037 0.00 0.00 0.00 2.32
6766 7050 6.598064 CCCTCCGTTTCTAAATACAAGTCATT 59.402 38.462 0.00 0.00 0.00 2.57
6767 7051 6.070424 TCCCTCCGTTTCTAAATACAAGTCAT 60.070 38.462 0.00 0.00 0.00 3.06
6768 7052 5.246656 TCCCTCCGTTTCTAAATACAAGTCA 59.753 40.000 0.00 0.00 0.00 3.41
6769 7053 5.727434 TCCCTCCGTTTCTAAATACAAGTC 58.273 41.667 0.00 0.00 0.00 3.01
6770 7054 5.247792 ACTCCCTCCGTTTCTAAATACAAGT 59.752 40.000 0.00 0.00 0.00 3.16
6771 7055 5.731591 ACTCCCTCCGTTTCTAAATACAAG 58.268 41.667 0.00 0.00 0.00 3.16
6772 7056 5.750352 ACTCCCTCCGTTTCTAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
6773 7057 6.189859 TCTACTCCCTCCGTTTCTAAATACA 58.810 40.000 0.00 0.00 0.00 2.29
6774 7058 6.705863 TCTACTCCCTCCGTTTCTAAATAC 57.294 41.667 0.00 0.00 0.00 1.89
6775 7059 7.064866 TGATCTACTCCCTCCGTTTCTAAATA 58.935 38.462 0.00 0.00 0.00 1.40
6776 7060 5.897824 TGATCTACTCCCTCCGTTTCTAAAT 59.102 40.000 0.00 0.00 0.00 1.40
6777 7061 5.266788 TGATCTACTCCCTCCGTTTCTAAA 58.733 41.667 0.00 0.00 0.00 1.85
6778 7062 4.863548 TGATCTACTCCCTCCGTTTCTAA 58.136 43.478 0.00 0.00 0.00 2.10
6779 7063 4.515028 TGATCTACTCCCTCCGTTTCTA 57.485 45.455 0.00 0.00 0.00 2.10
6780 7064 3.383698 TGATCTACTCCCTCCGTTTCT 57.616 47.619 0.00 0.00 0.00 2.52
6781 7065 4.501743 GGAATGATCTACTCCCTCCGTTTC 60.502 50.000 0.00 0.00 0.00 2.78
6782 7066 3.388350 GGAATGATCTACTCCCTCCGTTT 59.612 47.826 0.00 0.00 0.00 3.60
6783 7067 2.966516 GGAATGATCTACTCCCTCCGTT 59.033 50.000 0.00 0.00 0.00 4.44
6784 7068 2.091278 TGGAATGATCTACTCCCTCCGT 60.091 50.000 0.00 0.00 0.00 4.69
6785 7069 2.598565 TGGAATGATCTACTCCCTCCG 58.401 52.381 0.00 0.00 0.00 4.63
6786 7070 3.711704 TGTTGGAATGATCTACTCCCTCC 59.288 47.826 0.00 0.00 0.00 4.30
6787 7071 5.559148 ATGTTGGAATGATCTACTCCCTC 57.441 43.478 0.00 0.00 0.00 4.30
6788 7072 5.983333 AATGTTGGAATGATCTACTCCCT 57.017 39.130 0.00 0.00 0.00 4.20
6789 7073 6.591935 TGTAATGTTGGAATGATCTACTCCC 58.408 40.000 0.00 0.00 0.00 4.30
6790 7074 8.682936 ATTGTAATGTTGGAATGATCTACTCC 57.317 34.615 0.00 0.00 0.00 3.85
6796 7080 8.778358 GGAGTCTATTGTAATGTTGGAATGATC 58.222 37.037 0.00 0.00 0.00 2.92
6804 7088 9.599866 TGTTCATAGGAGTCTATTGTAATGTTG 57.400 33.333 0.00 0.00 34.16 3.33
6833 7117 4.787551 ACATTGACTTGGACAACCTGTAA 58.212 39.130 0.00 0.00 37.04 2.41
6846 7130 2.223971 ACGAGTCCGACAACATTGACTT 60.224 45.455 0.40 0.00 38.15 3.01
6871 7155 1.139734 GTTGAGCTCGGCGATGAGA 59.860 57.895 11.27 0.00 38.28 3.27
6895 7179 1.066114 GGTCAAGCTCGAGTTCGACG 61.066 60.000 15.13 0.00 44.22 5.12
6919 7203 3.995506 GATGTGGTTGGCCCCTCCG 62.996 68.421 0.00 0.00 37.80 4.63
6920 7204 2.043953 GATGTGGTTGGCCCCTCC 60.044 66.667 0.00 0.00 0.00 4.30
6921 7205 2.043953 GGATGTGGTTGGCCCCTC 60.044 66.667 0.00 0.00 0.00 4.30
6922 7206 2.535317 AGGATGTGGTTGGCCCCT 60.535 61.111 0.00 0.00 0.00 4.79
6923 7207 2.043953 GAGGATGTGGTTGGCCCC 60.044 66.667 0.00 0.00 0.00 5.80
6924 7208 1.379044 CAGAGGATGTGGTTGGCCC 60.379 63.158 0.00 0.00 0.00 5.80
6925 7209 0.678048 GACAGAGGATGTGGTTGGCC 60.678 60.000 0.00 0.00 44.17 5.36
6926 7210 0.326264 AGACAGAGGATGTGGTTGGC 59.674 55.000 0.00 0.00 44.17 4.52
6927 7211 2.430465 CAAGACAGAGGATGTGGTTGG 58.570 52.381 0.00 0.00 44.17 3.77
6928 7212 1.808945 GCAAGACAGAGGATGTGGTTG 59.191 52.381 0.00 0.00 44.17 3.77
6929 7213 1.421268 TGCAAGACAGAGGATGTGGTT 59.579 47.619 0.00 0.00 44.17 3.67
6930 7214 1.059098 TGCAAGACAGAGGATGTGGT 58.941 50.000 0.00 0.00 44.17 4.16
6931 7215 1.002888 AGTGCAAGACAGAGGATGTGG 59.997 52.381 0.00 0.00 44.17 4.17
6932 7216 2.344950 GAGTGCAAGACAGAGGATGTG 58.655 52.381 0.00 0.00 44.17 3.21
6934 7218 1.067283 ACGAGTGCAAGACAGAGGATG 60.067 52.381 0.00 0.00 0.00 3.51
6935 7219 1.261480 ACGAGTGCAAGACAGAGGAT 58.739 50.000 0.00 0.00 0.00 3.24
6936 7220 1.040646 AACGAGTGCAAGACAGAGGA 58.959 50.000 0.00 0.00 0.00 3.71
6949 7233 2.317040 TCTGAAAGAGGGACAACGAGT 58.683 47.619 0.00 0.00 38.67 4.18
6992 7291 1.674322 CACGAGGGAAAACCCGCAT 60.674 57.895 9.42 0.00 41.63 4.73
7002 7301 1.488705 ATGGCAAGGTTCACGAGGGA 61.489 55.000 0.00 0.00 0.00 4.20
7023 7322 1.028868 AGGAAAAGCGATGAGGCAGC 61.029 55.000 0.00 0.00 34.64 5.25
7025 7324 0.677731 CCAGGAAAAGCGATGAGGCA 60.678 55.000 0.00 0.00 34.64 4.75
7033 7332 0.955919 GAGGGACACCAGGAAAAGCG 60.956 60.000 0.00 0.00 40.13 4.68
7035 7334 2.158608 AGTTGAGGGACACCAGGAAAAG 60.159 50.000 0.00 0.00 40.13 2.27
7039 7338 0.764890 CAAGTTGAGGGACACCAGGA 59.235 55.000 0.00 0.00 40.13 3.86
7053 7352 0.620556 ACCCGCATCATCCTCAAGTT 59.379 50.000 0.00 0.00 0.00 2.66
7057 7356 0.465705 GAAGACCCGCATCATCCTCA 59.534 55.000 0.00 0.00 0.00 3.86
7083 7382 2.214216 CCAGTGAGTCCCACCCGAA 61.214 63.158 0.00 0.00 46.87 4.30
7089 7388 1.192146 GGCTGTACCAGTGAGTCCCA 61.192 60.000 0.00 0.00 38.86 4.37
7103 7402 0.396435 TGTGAAGTTCATCGGGCTGT 59.604 50.000 9.18 0.00 0.00 4.40
7132 7436 5.104193 AGCTCAACTTCCTGGTGATTGATAT 60.104 40.000 8.82 0.00 42.19 1.63
7134 7438 3.009916 AGCTCAACTTCCTGGTGATTGAT 59.990 43.478 8.82 0.00 42.19 2.57
7137 7441 2.613977 CGAGCTCAACTTCCTGGTGATT 60.614 50.000 15.40 0.00 42.19 2.57
7170 7474 1.812922 CATCGTGTGGAGGCTCAGC 60.813 63.158 17.69 8.67 0.00 4.26
7185 7489 0.786581 CACGCGCCTATGACATCATC 59.213 55.000 5.73 0.00 37.76 2.92
7187 7491 1.882625 GCACGCGCCTATGACATCA 60.883 57.895 5.73 0.00 0.00 3.07
7216 7520 1.972198 TCGGCACCTTCGAGACAAT 59.028 52.632 0.00 0.00 32.51 2.71
7217 7521 3.450507 TCGGCACCTTCGAGACAA 58.549 55.556 0.00 0.00 32.51 3.18
7242 7546 2.889988 CAATGCGACGGCCGATGA 60.890 61.111 35.90 13.00 41.76 2.92
7243 7547 3.940640 CCAATGCGACGGCCGATG 61.941 66.667 35.90 24.10 41.76 3.84
7244 7548 3.673956 TTCCAATGCGACGGCCGAT 62.674 57.895 35.90 16.95 41.76 4.18
7254 7558 3.581024 TTCAGCATCAAGTTCCAATGC 57.419 42.857 6.36 6.36 44.80 3.56
7256 7560 4.984161 CGTTTTTCAGCATCAAGTTCCAAT 59.016 37.500 0.00 0.00 0.00 3.16
7257 7561 4.358851 CGTTTTTCAGCATCAAGTTCCAA 58.641 39.130 0.00 0.00 0.00 3.53
7260 7564 2.726241 GCCGTTTTTCAGCATCAAGTTC 59.274 45.455 0.00 0.00 0.00 3.01
7265 7569 0.947960 TTCGCCGTTTTTCAGCATCA 59.052 45.000 0.00 0.00 0.00 3.07
7307 7611 1.071605 GTGTAGAGCAAGTTCGGCTG 58.928 55.000 0.00 0.00 42.78 4.85
7311 7615 0.435008 GCGTGTGTAGAGCAAGTTCG 59.565 55.000 0.00 0.00 0.00 3.95
7323 7627 1.841663 GATGCCGTCAAAGCGTGTGT 61.842 55.000 0.00 0.00 0.00 3.72
7330 7634 2.745884 TGCCGGATGCCGTCAAAG 60.746 61.111 5.05 0.00 46.80 2.77
7333 7637 3.469970 ATCTGCCGGATGCCGTCA 61.470 61.111 5.05 0.00 46.80 4.35
7345 7649 1.793613 GTCGTTGCGTTGCATCTGC 60.794 57.895 0.00 0.00 38.76 4.26
7353 7657 3.602946 CGAATTTACACTGTCGTTGCGTT 60.603 43.478 0.00 0.00 0.00 4.84
7354 7658 2.097104 CGAATTTACACTGTCGTTGCGT 60.097 45.455 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.