Multiple sequence alignment - TraesCS7B01G157700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G157700 chr7B 100.000 5672 0 0 1 5672 213037914 213043585 0.000000e+00 10475.0
1 TraesCS7B01G157700 chr7B 90.784 510 41 2 5167 5670 59674384 59673875 0.000000e+00 676.0
2 TraesCS7B01G157700 chr7B 90.588 510 42 2 5167 5670 735987059 735986550 0.000000e+00 671.0
3 TraesCS7B01G157700 chr7B 85.382 301 31 10 3279 3575 713283952 713284243 3.320000e-77 300.0
4 TraesCS7B01G157700 chr7D 95.113 1412 59 7 2880 4285 236584491 236585898 0.000000e+00 2217.0
5 TraesCS7B01G157700 chr7D 87.491 1407 122 28 3 1381 236580679 236582059 0.000000e+00 1574.0
6 TraesCS7B01G157700 chr7D 97.215 790 21 1 1372 2161 236583103 236583891 0.000000e+00 1336.0
7 TraesCS7B01G157700 chr7D 94.426 610 28 4 2245 2850 236583887 236584494 0.000000e+00 933.0
8 TraesCS7B01G157700 chr7D 93.721 430 17 3 4286 4715 236586887 236587306 2.230000e-178 636.0
9 TraesCS7B01G157700 chr7D 86.842 304 31 6 3278 3575 618773237 618773537 1.180000e-86 331.0
10 TraesCS7B01G157700 chr7D 85.484 310 32 12 3277 3585 618868429 618868726 1.530000e-80 311.0
11 TraesCS7B01G157700 chr7D 84.768 302 30 10 2936 3225 618772858 618773155 7.190000e-74 289.0
12 TraesCS7B01G157700 chr7D 84.039 307 27 8 2936 3220 618868037 618868343 5.600000e-70 276.0
13 TraesCS7B01G157700 chr7D 83.083 266 21 11 2933 3175 618809946 618810210 2.660000e-53 220.0
14 TraesCS7B01G157700 chr7D 92.222 90 5 1 2815 2902 355124991 355125080 5.970000e-25 126.0
15 TraesCS7B01G157700 chr7A 91.885 838 52 10 3706 4541 251560988 251561811 0.000000e+00 1157.0
16 TraesCS7B01G157700 chr7A 87.311 993 93 18 1 981 251557666 251558637 0.000000e+00 1105.0
17 TraesCS7B01G157700 chr7A 88.486 469 25 15 3243 3708 251559465 251559907 1.800000e-149 540.0
18 TraesCS7B01G157700 chr7A 85.882 510 44 9 4687 5172 251598585 251599090 8.420000e-143 518.0
19 TraesCS7B01G157700 chr7A 92.444 225 16 1 2593 2817 251558909 251559132 2.550000e-83 320.0
20 TraesCS7B01G157700 chr7A 92.718 206 13 1 2896 3101 251559130 251559333 4.300000e-76 296.0
21 TraesCS7B01G157700 chr7A 95.092 163 7 1 4539 4700 251581294 251581456 7.290000e-64 255.0
22 TraesCS7B01G157700 chr7A 87.940 199 22 2 2614 2812 712416966 712417162 3.420000e-57 233.0
23 TraesCS7B01G157700 chr7A 91.870 123 10 0 3137 3259 251559331 251559453 7.560000e-39 172.0
24 TraesCS7B01G157700 chr7A 94.393 107 5 1 2156 2262 251558769 251558874 4.550000e-36 163.0
25 TraesCS7B01G157700 chr3D 91.071 504 40 1 5167 5665 395834055 395834558 0.000000e+00 676.0
26 TraesCS7B01G157700 chr3D 84.830 323 34 10 2262 2572 23765792 23765473 1.530000e-80 311.0
27 TraesCS7B01G157700 chr6B 90.607 511 40 4 5167 5670 260601305 260600796 0.000000e+00 671.0
28 TraesCS7B01G157700 chr6B 91.919 99 5 2 2816 2912 44827271 44827174 9.910000e-28 135.0
29 TraesCS7B01G157700 chr4B 90.467 514 42 3 5164 5670 592204237 592204750 0.000000e+00 671.0
30 TraesCS7B01G157700 chr4B 90.588 510 39 3 5167 5670 629957933 629957427 0.000000e+00 667.0
31 TraesCS7B01G157700 chr3A 90.588 510 39 3 5167 5670 735599532 735599026 0.000000e+00 667.0
32 TraesCS7B01G157700 chr3A 82.243 321 33 11 2262 2572 33152614 33152308 7.290000e-64 255.0
33 TraesCS7B01G157700 chr3A 87.500 104 9 3 2814 2914 81463457 81463355 3.590000e-22 117.0
34 TraesCS7B01G157700 chr3A 86.585 82 9 2 719 800 744969311 744969232 7.830000e-14 89.8
35 TraesCS7B01G157700 chr3A 84.146 82 11 2 719 800 745057552 745057473 1.690000e-10 78.7
36 TraesCS7B01G157700 chr1B 90.291 515 43 3 5163 5671 352331944 352332457 0.000000e+00 667.0
37 TraesCS7B01G157700 chr5B 90.392 510 43 2 5167 5670 445179613 445179104 0.000000e+00 665.0
38 TraesCS7B01G157700 chr5B 72.748 444 102 15 1357 1786 21036371 21035933 1.280000e-26 132.0
39 TraesCS7B01G157700 chr3B 84.783 322 36 10 2262 2572 41580417 41580736 1.530000e-80 311.0
40 TraesCS7B01G157700 chr3B 94.253 87 2 1 2815 2898 623629063 623629149 4.610000e-26 130.0
41 TraesCS7B01G157700 chr3B 90.909 99 4 3 2815 2910 144188987 144188891 1.660000e-25 128.0
42 TraesCS7B01G157700 chr5D 78.295 387 75 4 1734 2114 117723816 117723433 2.040000e-59 241.0
43 TraesCS7B01G157700 chr2D 73.252 658 154 18 1221 1864 81968481 81969130 2.660000e-53 220.0
44 TraesCS7B01G157700 chr4A 94.118 85 3 1 2815 2897 679672692 679672776 1.660000e-25 128.0
45 TraesCS7B01G157700 chr2B 93.258 89 3 1 2813 2898 690207311 690207399 1.660000e-25 128.0
46 TraesCS7B01G157700 chr2B 91.489 94 4 2 2815 2905 6101738 6101830 5.970000e-25 126.0
47 TraesCS7B01G157700 chr5A 88.571 105 7 4 2799 2898 640692791 640692687 7.720000e-24 122.0
48 TraesCS7B01G157700 chr5A 100.000 29 0 0 4875 4903 688704993 688704965 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G157700 chr7B 213037914 213043585 5671 False 10475.000000 10475 100.0000 1 5672 1 chr7B.!!$F1 5671
1 TraesCS7B01G157700 chr7B 59673875 59674384 509 True 676.000000 676 90.7840 5167 5670 1 chr7B.!!$R1 503
2 TraesCS7B01G157700 chr7B 735986550 735987059 509 True 671.000000 671 90.5880 5167 5670 1 chr7B.!!$R2 503
3 TraesCS7B01G157700 chr7D 236580679 236587306 6627 False 1339.200000 2217 93.5932 3 4715 5 chr7D.!!$F3 4712
4 TraesCS7B01G157700 chr7D 618772858 618773537 679 False 310.000000 331 85.8050 2936 3575 2 chr7D.!!$F4 639
5 TraesCS7B01G157700 chr7D 618868037 618868726 689 False 293.500000 311 84.7615 2936 3585 2 chr7D.!!$F5 649
6 TraesCS7B01G157700 chr7A 251557666 251561811 4145 False 536.142857 1157 91.3010 1 4541 7 chr7A.!!$F4 4540
7 TraesCS7B01G157700 chr7A 251598585 251599090 505 False 518.000000 518 85.8820 4687 5172 1 chr7A.!!$F2 485
8 TraesCS7B01G157700 chr3D 395834055 395834558 503 False 676.000000 676 91.0710 5167 5665 1 chr3D.!!$F1 498
9 TraesCS7B01G157700 chr6B 260600796 260601305 509 True 671.000000 671 90.6070 5167 5670 1 chr6B.!!$R2 503
10 TraesCS7B01G157700 chr4B 592204237 592204750 513 False 671.000000 671 90.4670 5164 5670 1 chr4B.!!$F1 506
11 TraesCS7B01G157700 chr4B 629957427 629957933 506 True 667.000000 667 90.5880 5167 5670 1 chr4B.!!$R1 503
12 TraesCS7B01G157700 chr3A 735599026 735599532 506 True 667.000000 667 90.5880 5167 5670 1 chr3A.!!$R3 503
13 TraesCS7B01G157700 chr1B 352331944 352332457 513 False 667.000000 667 90.2910 5163 5671 1 chr1B.!!$F1 508
14 TraesCS7B01G157700 chr5B 445179104 445179613 509 True 665.000000 665 90.3920 5167 5670 1 chr5B.!!$R2 503
15 TraesCS7B01G157700 chr2D 81968481 81969130 649 False 220.000000 220 73.2520 1221 1864 1 chr2D.!!$F1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 116 1.734655 ATGAGAGACCCCACAGTTGT 58.265 50.0 0.0 0.00 0.00 3.32 F
1618 2733 0.853530 AAGGCTTCCTCTGGTGGTTT 59.146 50.0 0.0 0.00 30.89 3.27 F
2042 3166 0.110644 GAAAAAGGTCGTCTGCTGCG 60.111 55.0 0.0 2.03 0.00 5.18 F
2797 3925 0.671796 TCTTGTCCTTCGCTTGTCGA 59.328 50.0 0.0 0.00 46.88 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 3166 1.026718 CACCCAATGCCGAACTCCTC 61.027 60.000 0.0 0.0 0.00 3.71 R
2909 4037 1.866269 TCTCATGTCCCCCTCCTGATA 59.134 52.381 0.0 0.0 0.00 2.15 R
3973 6242 1.459592 CTCGTTGACATGAAACCCGTC 59.540 52.381 0.0 0.0 0.00 4.79 R
4700 7961 0.036952 CTGCTCTCGTTGGTCACCAT 60.037 55.000 0.0 0.0 31.53 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 67 4.251543 ACTAGGCAAAATCCAAAAACCG 57.748 40.909 0.00 0.00 0.00 4.44
81 89 6.059484 ACCGAGGAAAAACTTGAAACTCATA 58.941 36.000 0.00 0.00 0.00 2.15
82 90 6.544564 ACCGAGGAAAAACTTGAAACTCATAA 59.455 34.615 0.00 0.00 0.00 1.90
102 113 3.884037 AAAAATGAGAGACCCCACAGT 57.116 42.857 0.00 0.00 0.00 3.55
105 116 1.734655 ATGAGAGACCCCACAGTTGT 58.265 50.000 0.00 0.00 0.00 3.32
111 122 2.598394 CCCCACAGTTGTGCCCAG 60.598 66.667 6.74 0.00 44.34 4.45
315 327 4.293648 CGACACGGACCAGGCACA 62.294 66.667 0.00 0.00 0.00 4.57
423 441 8.782533 AATTGAACAATTCTCTAAACACGAAC 57.217 30.769 6.91 0.00 36.34 3.95
425 443 8.651391 TTGAACAATTCTCTAAACACGAACTA 57.349 30.769 0.00 0.00 0.00 2.24
430 448 8.979574 ACAATTCTCTAAACACGAACTAGAAAG 58.020 33.333 0.00 0.00 0.00 2.62
496 516 5.479716 ACAACTTAGGAAACACGAACAAG 57.520 39.130 0.00 0.00 0.00 3.16
506 526 2.365582 ACACGAACAAGCTTTGGAACT 58.634 42.857 0.00 0.00 34.12 3.01
715 738 7.273381 CACGGACATGTTTTGGAATTCTTAATC 59.727 37.037 0.00 0.81 0.00 1.75
794 817 8.735692 AAACAACATTTGAAGAATTGGAACAT 57.264 26.923 0.00 0.00 39.30 2.71
795 818 8.735692 AACAACATTTGAAGAATTGGAACATT 57.264 26.923 0.00 0.00 39.30 2.71
796 819 8.735692 ACAACATTTGAAGAATTGGAACATTT 57.264 26.923 0.00 0.00 39.30 2.32
797 820 9.176460 ACAACATTTGAAGAATTGGAACATTTT 57.824 25.926 0.00 0.00 39.30 1.82
947 970 2.116238 TGTACTGGACTGGGCCTAATC 58.884 52.381 4.53 0.00 0.00 1.75
1001 1056 2.739943 TGACCCAGATCCAGACTACAG 58.260 52.381 0.00 0.00 0.00 2.74
1088 1150 3.436924 CAATGGCTGCTGCTGCGA 61.437 61.111 22.39 19.95 43.34 5.10
1089 1151 2.439701 AATGGCTGCTGCTGCGAT 60.440 55.556 22.39 21.18 43.34 4.58
1177 1239 2.693762 CGAGCAGCCCACCAACATG 61.694 63.158 0.00 0.00 0.00 3.21
1219 1281 1.318158 CGTGCCCCTCCTACGTAACT 61.318 60.000 0.00 0.00 33.48 2.24
1574 2689 3.691342 CGGCCAAGAGACCGTGGA 61.691 66.667 2.24 0.00 43.43 4.02
1603 2718 2.034221 GTCCTGTCCCACCAAGGC 59.966 66.667 0.00 0.00 35.39 4.35
1618 2733 0.853530 AAGGCTTCCTCTGGTGGTTT 59.146 50.000 0.00 0.00 30.89 3.27
1858 2982 1.678970 AAAGGCGACATGGGGAAGC 60.679 57.895 0.00 0.00 0.00 3.86
1863 2987 2.124695 GACATGGGGAAGCCCGAC 60.125 66.667 0.00 0.00 46.66 4.79
1957 3081 4.043200 GCTTTGCCGCTGGTCCAC 62.043 66.667 0.00 0.00 0.00 4.02
1998 3122 4.932200 GGTCTACTTCTTCTTGGACACATG 59.068 45.833 0.00 0.00 0.00 3.21
2042 3166 0.110644 GAAAAAGGTCGTCTGCTGCG 60.111 55.000 0.00 2.03 0.00 5.18
2200 3324 7.751646 TCTCTCTTAACTGTTTTGGGGATTTA 58.248 34.615 0.00 0.00 0.00 1.40
2240 3364 9.645059 TTGTTTTTAAGTGTTGATTTGATGTGA 57.355 25.926 0.00 0.00 0.00 3.58
2244 3368 5.395682 AAGTGTTGATTTGATGTGATGGG 57.604 39.130 0.00 0.00 0.00 4.00
2260 3384 7.936026 TGTGATGGGGCACATATATATAGAT 57.064 36.000 0.06 0.00 43.35 1.98
2288 3412 2.562635 GGTTTCCCCTCGCTTTAGATC 58.437 52.381 0.00 0.00 0.00 2.75
2314 3438 1.152830 AACCGCCCCAACAACATCT 59.847 52.632 0.00 0.00 0.00 2.90
2334 3458 3.087031 CTGACAACAAAGGCCATCTCAT 58.913 45.455 5.01 0.00 0.00 2.90
2340 3464 2.225091 ACAAAGGCCATCTCATGTTCCA 60.225 45.455 5.01 0.00 0.00 3.53
2358 3482 5.874261 TGTTCCAGCCAAAAGAAAGAAAAAG 59.126 36.000 0.00 0.00 0.00 2.27
2427 3554 0.901124 AGCACAGCAAAACAAACCCA 59.099 45.000 0.00 0.00 0.00 4.51
2428 3555 1.485895 AGCACAGCAAAACAAACCCAT 59.514 42.857 0.00 0.00 0.00 4.00
2432 3559 4.024977 GCACAGCAAAACAAACCCATAAAG 60.025 41.667 0.00 0.00 0.00 1.85
2456 3583 6.385467 AGAGGAATCACAAGCTAACTAATCCT 59.615 38.462 7.49 7.49 36.33 3.24
2463 3590 4.125703 CAAGCTAACTAATCCTGCTCTGG 58.874 47.826 0.00 0.00 33.10 3.86
2471 3598 2.985456 CCTGCTCTGGTGGAGGAC 59.015 66.667 4.57 0.00 46.72 3.85
2476 3604 4.715130 TCTGGTGGAGGACGGGGG 62.715 72.222 0.00 0.00 0.00 5.40
2586 3714 3.185203 AGCCACCACCACCCACAT 61.185 61.111 0.00 0.00 0.00 3.21
2650 3778 1.000955 GAAAGCTTGACGACCTCTCCA 59.999 52.381 0.00 0.00 0.00 3.86
2723 3851 6.765512 TGTCAAACATATCATATCCGAAGCAA 59.234 34.615 0.00 0.00 0.00 3.91
2734 3862 8.669946 TCATATCCGAAGCAACATTTTATGTA 57.330 30.769 0.00 0.00 44.07 2.29
2766 3894 5.648178 TTGCATTAATCACACTTGAGCAT 57.352 34.783 0.00 0.00 34.35 3.79
2783 3911 6.721704 TGAGCATCACTATCACTATCTTGT 57.278 37.500 0.00 0.00 42.56 3.16
2797 3925 0.671796 TCTTGTCCTTCGCTTGTCGA 59.328 50.000 0.00 0.00 46.88 4.20
2828 3956 1.473434 CGCAGTTACTCCCTCCATTCC 60.473 57.143 0.00 0.00 0.00 3.01
2835 3963 6.318900 CAGTTACTCCCTCCATTCCAAAATAC 59.681 42.308 0.00 0.00 0.00 1.89
2843 3971 5.887598 CCTCCATTCCAAAATACATGACTCA 59.112 40.000 0.00 0.00 0.00 3.41
2850 3978 7.581213 TCCAAAATACATGACTCAACTTTGT 57.419 32.000 0.00 0.00 0.00 2.83
2851 3979 8.684386 TCCAAAATACATGACTCAACTTTGTA 57.316 30.769 0.00 0.00 0.00 2.41
2852 3980 8.564574 TCCAAAATACATGACTCAACTTTGTAC 58.435 33.333 0.00 0.00 0.00 2.90
2853 3981 8.567948 CCAAAATACATGACTCAACTTTGTACT 58.432 33.333 0.00 0.00 0.00 2.73
2857 3985 9.998106 AATACATGACTCAACTTTGTACTAACT 57.002 29.630 0.00 0.00 0.00 2.24
2858 3986 9.998106 ATACATGACTCAACTTTGTACTAACTT 57.002 29.630 0.00 0.00 0.00 2.66
2859 3987 8.732746 ACATGACTCAACTTTGTACTAACTTT 57.267 30.769 0.00 0.00 0.00 2.66
2860 3988 9.826574 ACATGACTCAACTTTGTACTAACTTTA 57.173 29.630 0.00 0.00 0.00 1.85
2862 3990 9.826574 ATGACTCAACTTTGTACTAACTTTACA 57.173 29.630 0.00 0.00 0.00 2.41
2863 3991 9.656040 TGACTCAACTTTGTACTAACTTTACAA 57.344 29.630 0.00 0.00 37.60 2.41
2892 4020 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
2955 4083 4.290985 TCAAGTAAAATCATCAGGTGGGGA 59.709 41.667 0.00 0.00 0.00 4.81
3000 4128 5.688807 TCCTGAATGAGGATTCTTGAATCC 58.311 41.667 26.50 26.50 46.96 3.01
3012 4140 7.371159 GGATTCTTGAATCCGAAAAAGAAACT 58.629 34.615 21.94 0.00 40.82 2.66
3203 4353 1.400494 GCCATGCTTTTGGTACCTACG 59.600 52.381 14.36 0.46 39.11 3.51
3410 4593 2.979678 TGATGGCCCCTCCTTAGAATAC 59.020 50.000 0.00 0.00 35.26 1.89
3537 4720 8.934023 ACCTGTACAATTTCTTGAATTAGGAA 57.066 30.769 0.00 0.00 35.79 3.36
3581 4766 5.812127 GGAAAAATACCTAAGCAATGCCTTG 59.188 40.000 0.00 0.00 35.36 3.61
3629 4815 3.513515 TCACAAAACAGAAGGCCAAAGTT 59.486 39.130 5.01 0.67 0.00 2.66
3741 6010 3.780294 TCACAGGGTATAGGCACTTCAAT 59.220 43.478 0.00 0.00 41.75 2.57
3765 6034 4.588951 TCTCGCAGAATATGGATTAGGTGT 59.411 41.667 0.00 0.00 34.09 4.16
3931 6200 5.643421 AGTTGATCATATTCTGGGAGCTT 57.357 39.130 0.00 0.00 0.00 3.74
3938 6207 8.219868 TGATCATATTCTGGGAGCTTAAATTCA 58.780 33.333 0.00 0.00 0.00 2.57
3973 6242 4.281688 TCTTTTCTTGATTTGAAGGGCCTG 59.718 41.667 6.92 0.00 0.00 4.85
3975 6244 2.795329 TCTTGATTTGAAGGGCCTGAC 58.205 47.619 6.92 5.29 0.00 3.51
4020 6289 3.604875 TTATTGACTCGGTGGAAGTCC 57.395 47.619 1.17 0.00 0.00 3.85
4024 6293 1.521450 GACTCGGTGGAAGTCCGTGA 61.521 60.000 12.14 0.00 46.86 4.35
4057 6326 1.489230 ACAGAGCTGCCATCATCATGA 59.511 47.619 0.00 0.00 30.57 3.07
4092 6362 5.871396 TCTTAACCTATGTGGACTGATCC 57.129 43.478 0.00 0.00 46.48 3.36
4188 6458 7.962441 TGCACTATATGTTTCAGAGCCTAATA 58.038 34.615 0.00 0.00 0.00 0.98
4269 6541 1.238439 CATCCAAGCACGGACTGTTT 58.762 50.000 0.00 0.00 38.07 2.83
4270 6542 1.608590 CATCCAAGCACGGACTGTTTT 59.391 47.619 0.00 0.00 38.07 2.43
4285 6557 5.983118 GGACTGTTTTATTCCAGTGTTTTGG 59.017 40.000 0.00 0.00 41.80 3.28
4287 7548 4.698575 TGTTTTATTCCAGTGTTTTGGGC 58.301 39.130 0.00 0.00 38.81 5.36
4291 7552 3.302344 CCAGTGTTTTGGGCGGGG 61.302 66.667 0.00 0.00 34.46 5.73
4292 7553 3.302344 CAGTGTTTTGGGCGGGGG 61.302 66.667 0.00 0.00 0.00 5.40
4337 7598 2.000447 GCTTGGGCTTAGTGAAGTACG 59.000 52.381 0.00 0.00 34.90 3.67
4338 7599 2.618053 CTTGGGCTTAGTGAAGTACGG 58.382 52.381 0.00 0.00 34.90 4.02
4340 7601 1.822990 TGGGCTTAGTGAAGTACGGAG 59.177 52.381 0.00 0.00 34.90 4.63
4436 7697 2.611751 CAGATCTCGACGATGACTCAGT 59.388 50.000 0.00 0.00 30.84 3.41
4443 7704 2.510874 GACGATGACTCAGTTGACTCG 58.489 52.381 0.00 0.00 0.00 4.18
4569 7830 9.334693 GTTGCTCTTTAATTATTGACTTGTCAG 57.665 33.333 3.61 0.00 0.00 3.51
4593 7854 6.540189 AGACCTTAGACAAATATGTGATGCAC 59.460 38.462 0.00 0.00 40.74 4.57
4638 7899 5.827797 TCTTTTCTGTAAGTTGGCAAGTGAT 59.172 36.000 8.61 0.00 33.76 3.06
4660 7921 6.710295 TGATCCGTATGCTGCTACATAAAAAT 59.290 34.615 0.00 0.00 34.41 1.82
4682 7943 6.811253 ATATTGTTGTGGTTTGACGTGTAT 57.189 33.333 0.00 0.00 0.00 2.29
4700 7961 8.542497 ACGTGTATTTTGAAGCACTCTTTATA 57.458 30.769 0.00 0.00 31.48 0.98
4701 7962 9.162764 ACGTGTATTTTGAAGCACTCTTTATAT 57.837 29.630 0.00 0.00 31.48 0.86
4705 7966 9.722056 GTATTTTGAAGCACTCTTTATATGGTG 57.278 33.333 0.00 0.00 31.48 4.17
4711 7972 5.186198 AGCACTCTTTATATGGTGACCAAC 58.814 41.667 9.06 0.00 36.95 3.77
4719 7980 0.036952 ATGGTGACCAACGAGAGCAG 60.037 55.000 9.06 0.00 36.95 4.24
4731 7993 2.289002 ACGAGAGCAGCTTTTTCTTGTG 59.711 45.455 0.00 0.61 34.94 3.33
4749 8011 8.893219 TTCTTGTGCAACCTATATATTCTCTG 57.107 34.615 0.00 0.00 34.36 3.35
4754 8016 8.874156 TGTGCAACCTATATATTCTCTGAATCT 58.126 33.333 0.00 0.00 34.36 2.40
4863 8125 7.881775 AGCAAAGAAATAATATTTCCTCCGT 57.118 32.000 18.92 1.29 0.00 4.69
4910 8191 4.077108 GGGACGAAGGAAGTACCAATTTT 58.923 43.478 0.00 0.00 42.20 1.82
4911 8192 5.247862 GGGACGAAGGAAGTACCAATTTTA 58.752 41.667 0.00 0.00 42.20 1.52
4912 8193 5.122869 GGGACGAAGGAAGTACCAATTTTAC 59.877 44.000 0.00 0.00 42.20 2.01
4913 8194 5.702209 GGACGAAGGAAGTACCAATTTTACA 59.298 40.000 0.00 0.00 42.04 2.41
4914 8195 6.373495 GGACGAAGGAAGTACCAATTTTACAT 59.627 38.462 0.00 0.00 42.04 2.29
4921 8202 5.054390 AGTACCAATTTTACATGCCGTTG 57.946 39.130 0.00 0.00 0.00 4.10
4922 8203 3.311486 ACCAATTTTACATGCCGTTGG 57.689 42.857 11.91 11.91 41.33 3.77
4953 8234 5.987347 AGACTGAAACAAAGCCATCAATTTG 59.013 36.000 0.00 0.00 41.22 2.32
4956 8237 4.512198 TGAAACAAAGCCATCAATTTGCAG 59.488 37.500 0.00 0.00 39.49 4.41
4959 8240 5.664294 ACAAAGCCATCAATTTGCAGATA 57.336 34.783 0.00 0.00 39.49 1.98
4961 8242 6.103997 ACAAAGCCATCAATTTGCAGATAAG 58.896 36.000 0.00 0.00 39.49 1.73
4997 8278 1.197721 CTTTCGTCGCTTCTGCCATTT 59.802 47.619 0.00 0.00 35.36 2.32
5030 8311 1.982660 TTGGTTGCACGATGGGTTTA 58.017 45.000 0.00 0.00 0.00 2.01
5039 8320 4.579340 TGCACGATGGGTTTACAAAAGTTA 59.421 37.500 0.00 0.00 0.00 2.24
5040 8321 5.067413 TGCACGATGGGTTTACAAAAGTTAA 59.933 36.000 0.00 0.00 0.00 2.01
5042 8323 6.074729 GCACGATGGGTTTACAAAAGTTAAAC 60.075 38.462 0.00 0.00 38.28 2.01
5049 8331 4.978083 TTACAAAAGTTAAACCGTGCCA 57.022 36.364 0.00 0.00 0.00 4.92
5055 8337 1.528776 TTAAACCGTGCCACCCCAC 60.529 57.895 0.00 0.00 0.00 4.61
5076 8358 7.285858 CCCCACCAAGGAATTAATCGTTTTATA 59.714 37.037 0.00 0.00 41.22 0.98
5098 8382 0.330267 TTCCCGTTTTCATCCTCCCC 59.670 55.000 0.00 0.00 0.00 4.81
5112 8396 1.274728 CCTCCCCATATTGAGAGAGCG 59.725 57.143 0.00 0.00 0.00 5.03
5132 8416 1.840635 GCTTATGGGGAGGAGACAACT 59.159 52.381 0.00 0.00 0.00 3.16
5135 8419 0.987294 ATGGGGAGGAGACAACTGTG 59.013 55.000 0.00 0.00 0.00 3.66
5151 8435 2.549754 ACTGTGGCGTGAATTTCTCTTG 59.450 45.455 0.00 0.00 0.00 3.02
5158 8442 5.147162 GGCGTGAATTTCTCTTGTTTACAG 58.853 41.667 0.00 0.00 0.00 2.74
5276 8561 1.134159 AGACCACCTAGCGACGACTAT 60.134 52.381 0.00 0.00 0.00 2.12
5280 8565 2.225963 CCACCTAGCGACGACTATAAGG 59.774 54.545 0.00 2.32 0.00 2.69
5349 8634 1.299089 GTCGGGCACAACTTGTTGC 60.299 57.895 12.76 4.23 0.00 4.17
5353 8638 0.175531 GGGCACAACTTGTTGCAGTT 59.824 50.000 12.76 0.00 37.49 3.16
5393 8683 3.976701 CTAAGGCCCCACCAGCACG 62.977 68.421 0.00 0.00 43.14 5.34
5402 8692 2.186160 CACCAGCACGCCAGAACAA 61.186 57.895 0.00 0.00 0.00 2.83
5411 8701 1.652563 GCCAGAACAACAACCGTCC 59.347 57.895 0.00 0.00 0.00 4.79
5426 8716 2.102588 ACCGTCCCCGATGAAGAATAAG 59.897 50.000 0.00 0.00 35.63 1.73
5433 8723 5.844516 TCCCCGATGAAGAATAAGGTAGATT 59.155 40.000 0.00 0.00 0.00 2.40
5468 8758 3.005050 TCCAAAGACACACGAACGTAGAT 59.995 43.478 0.00 0.00 0.00 1.98
5475 8765 4.304110 ACACACGAACGTAGATGAACAAT 58.696 39.130 0.00 0.00 0.00 2.71
5652 8942 3.379057 AGGACACAAACCCTAACAAAACG 59.621 43.478 0.00 0.00 0.00 3.60
5658 8948 4.142116 ACAAACCCTAACAAAACGGAAAGG 60.142 41.667 0.00 0.00 0.00 3.11
5665 8955 2.358015 ACAAAACGGAAAGGAACGACA 58.642 42.857 0.00 0.00 0.00 4.35
5670 8960 4.642445 AACGGAAAGGAACGACAAAAAT 57.358 36.364 0.00 0.00 0.00 1.82
5671 8961 4.219143 ACGGAAAGGAACGACAAAAATC 57.781 40.909 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.257127 CCTCGGTTTTTGGATTTTGCCTA 59.743 43.478 0.00 0.00 0.00 3.93
82 90 3.884037 ACTGTGGGGTCTCTCATTTTT 57.116 42.857 0.00 0.00 0.00 1.94
87 98 0.758734 CACAACTGTGGGGTCTCTCA 59.241 55.000 1.70 0.00 42.10 3.27
88 99 0.603975 GCACAACTGTGGGGTCTCTC 60.604 60.000 11.63 0.00 45.72 3.20
94 105 2.598394 CTGGGCACAACTGTGGGG 60.598 66.667 11.63 0.00 45.72 4.96
100 111 3.367743 CGCATGCTGGGCACAACT 61.368 61.111 17.13 0.00 43.04 3.16
101 112 3.364441 TCGCATGCTGGGCACAAC 61.364 61.111 17.13 0.00 43.04 3.32
102 113 3.364441 GTCGCATGCTGGGCACAA 61.364 61.111 17.13 0.00 43.04 3.33
143 154 2.431942 GCTTGTGTGCTGCCATGC 60.432 61.111 0.00 0.00 0.00 4.06
207 219 9.280174 CCTCTGTACATGGTTCTTTAAAGTTTA 57.720 33.333 14.74 0.00 0.00 2.01
208 220 7.996644 TCCTCTGTACATGGTTCTTTAAAGTTT 59.003 33.333 14.74 0.00 0.00 2.66
267 279 3.006967 CCTGGTTCAGTTGCTACAGTACT 59.993 47.826 0.13 0.00 0.00 2.73
304 316 2.938956 ATAGCTATTGTGCCTGGTCC 57.061 50.000 0.00 0.00 0.00 4.46
401 413 8.139350 TCTAGTTCGTGTTTAGAGAATTGTTCA 58.861 33.333 0.00 0.00 0.00 3.18
417 429 2.792674 TGTTCGTGCTTTCTAGTTCGTG 59.207 45.455 0.00 0.00 0.00 4.35
418 430 3.088194 TGTTCGTGCTTTCTAGTTCGT 57.912 42.857 0.00 0.00 0.00 3.85
419 431 4.647291 AATGTTCGTGCTTTCTAGTTCG 57.353 40.909 0.00 0.00 0.00 3.95
420 432 6.910433 TCAAAAATGTTCGTGCTTTCTAGTTC 59.090 34.615 0.00 0.00 0.00 3.01
423 441 7.132213 TCTTCAAAAATGTTCGTGCTTTCTAG 58.868 34.615 0.00 0.00 0.00 2.43
425 443 5.890334 TCTTCAAAAATGTTCGTGCTTTCT 58.110 33.333 0.00 0.00 0.00 2.52
430 448 5.514914 TCTTGTTCTTCAAAAATGTTCGTGC 59.485 36.000 0.00 0.00 35.48 5.34
520 540 4.916983 CCAAAACTTGGTCACAGATTGA 57.083 40.909 0.00 0.00 45.93 2.57
601 621 9.364989 TGTTCTTGTTTCGAAAATCTTTTGAAT 57.635 25.926 13.10 0.00 0.00 2.57
615 636 8.268738 GGAATTTCAAAGAATGTTCTTGTTTCG 58.731 33.333 8.64 0.00 46.22 3.46
616 637 9.097257 TGGAATTTCAAAGAATGTTCTTGTTTC 57.903 29.630 8.64 7.70 46.22 2.78
674 697 4.452825 TGTCCGTGTTTCCAAAACTGATA 58.547 39.130 4.40 0.00 0.00 2.15
742 765 9.030301 ACAATTCCAAAAACTATTCTCGTTTTG 57.970 29.630 2.15 0.00 42.04 2.44
769 792 8.735692 ATGTTCCAATTCTTCAAATGTTGTTT 57.264 26.923 0.00 0.00 0.00 2.83
947 970 2.983592 GTTGTGTTCCGGGGCAGG 60.984 66.667 0.00 0.00 0.00 4.85
1001 1056 2.105128 CGGGATGAGGAGTGTCGC 59.895 66.667 0.00 0.00 0.00 5.19
1177 1239 3.481453 AGCTTTTCTGAAGGTGAAGGAC 58.519 45.455 2.73 0.00 0.00 3.85
1219 1281 1.154599 GACGACGTTACTCGCGACA 60.155 57.895 3.71 0.00 44.19 4.35
1574 2689 4.052229 CAGGACGCCGTCTCCGTT 62.052 66.667 17.76 0.00 39.30 4.44
1603 2718 3.262915 AGAGATCAAACCACCAGAGGAAG 59.737 47.826 0.00 0.00 0.00 3.46
1618 2733 3.495331 GAGGATGCAGTAGGAGAGATCA 58.505 50.000 0.00 0.00 0.00 2.92
1659 2774 1.296056 CTGGTAAAACTCCGGCACCG 61.296 60.000 1.02 1.02 39.44 4.94
1946 3070 4.802051 CATGGGGTGGACCAGCGG 62.802 72.222 17.21 3.53 45.20 5.52
1957 3081 2.359354 TCGTTGGCGTTCATGGGG 60.359 61.111 0.00 0.00 39.49 4.96
2042 3166 1.026718 CACCCAATGCCGAACTCCTC 61.027 60.000 0.00 0.00 0.00 3.71
2244 3368 9.686683 ACCCTTTTTCATCTATATATATGTGCC 57.313 33.333 5.44 0.00 0.00 5.01
2285 3409 2.582052 TGGGGCGGTTGATTTATGATC 58.418 47.619 0.00 0.00 0.00 2.92
2288 3412 1.821753 TGTTGGGGCGGTTGATTTATG 59.178 47.619 0.00 0.00 0.00 1.90
2314 3438 2.655090 TGAGATGGCCTTTGTTGTCA 57.345 45.000 3.32 0.00 0.00 3.58
2334 3458 5.413309 TTTTCTTTCTTTTGGCTGGAACA 57.587 34.783 0.00 0.00 0.00 3.18
2340 3464 3.865164 CGTGCTTTTTCTTTCTTTTGGCT 59.135 39.130 0.00 0.00 0.00 4.75
2428 3555 9.601217 GATTAGTTAGCTTGTGATTCCTCTTTA 57.399 33.333 0.00 0.00 0.00 1.85
2432 3559 6.481644 CAGGATTAGTTAGCTTGTGATTCCTC 59.518 42.308 0.00 0.00 0.00 3.71
2456 3583 2.997315 CCGTCCTCCACCAGAGCA 60.997 66.667 0.00 0.00 41.74 4.26
2586 3714 7.561356 TCTGATGAAGCTTCGGATATATATGGA 59.439 37.037 21.11 0.00 0.00 3.41
2650 3778 3.244353 CCTGAGTGAGTGACCAAACTGAT 60.244 47.826 0.00 0.00 0.00 2.90
2734 3862 7.844009 AGTGTGATTAATGCAAATGGAGAATT 58.156 30.769 0.00 0.00 0.00 2.17
2766 3894 5.221067 GCGAAGGACAAGATAGTGATAGTGA 60.221 44.000 0.00 0.00 0.00 3.41
2797 3925 3.240069 GAGTAACTGCGTCGTGTTACAT 58.760 45.455 27.85 19.42 46.28 2.29
2860 3988 9.736023 GTTTCAAAATAGATGACTCAACTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
2861 3989 8.895845 CGTTTCAAAATAGATGACTCAACTTTG 58.104 33.333 0.00 0.00 0.00 2.77
2862 3990 8.076178 CCGTTTCAAAATAGATGACTCAACTTT 58.924 33.333 0.00 0.00 0.00 2.66
2863 3991 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
2864 3992 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
2865 3993 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
2866 3994 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
2867 3995 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
2868 3996 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
2869 3997 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
2870 3998 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
2871 3999 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
2872 4000 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
2873 4001 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
2874 4002 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
2875 4003 4.874396 GGTACTCCCTCCGTTTCAAAATAG 59.126 45.833 0.00 0.00 0.00 1.73
2876 4004 4.533311 AGGTACTCCCTCCGTTTCAAAATA 59.467 41.667 0.00 0.00 40.71 1.40
2877 4005 3.329814 AGGTACTCCCTCCGTTTCAAAAT 59.670 43.478 0.00 0.00 40.71 1.82
2878 4006 2.707257 AGGTACTCCCTCCGTTTCAAAA 59.293 45.455 0.00 0.00 40.71 2.44
2879 4007 2.332117 AGGTACTCCCTCCGTTTCAAA 58.668 47.619 0.00 0.00 40.71 2.69
2880 4008 2.019807 AGGTACTCCCTCCGTTTCAA 57.980 50.000 0.00 0.00 40.71 2.69
2881 4009 3.780307 AGGTACTCCCTCCGTTTCA 57.220 52.632 0.00 0.00 40.71 2.69
2909 4037 1.866269 TCTCATGTCCCCCTCCTGATA 59.134 52.381 0.00 0.00 0.00 2.15
2991 4119 8.665685 GCTATAGTTTCTTTTTCGGATTCAAGA 58.334 33.333 0.84 0.00 0.00 3.02
3000 4128 7.581476 TGACTTTGGCTATAGTTTCTTTTTCG 58.419 34.615 0.84 0.00 0.00 3.46
3012 4140 6.832520 TTCTTGCATTTGACTTTGGCTATA 57.167 33.333 0.00 0.00 0.00 1.31
3016 4144 6.973229 ATATTTCTTGCATTTGACTTTGGC 57.027 33.333 0.00 0.00 0.00 4.52
3203 4353 6.370718 ACTTCCTATTTGGTGATGAAACGTAC 59.629 38.462 0.00 0.00 37.07 3.67
3253 4403 6.807789 ACTCTCTCTGTTTCGTTTTAGTCTT 58.192 36.000 0.00 0.00 0.00 3.01
3263 4442 9.658475 CTATACTCAAATACTCTCTCTGTTTCG 57.342 37.037 0.00 0.00 0.00 3.46
3547 4730 7.234577 TGCTTAGGTATTTTTCCAGACCAAAAT 59.765 33.333 0.00 0.00 36.69 1.82
3550 4733 5.636123 TGCTTAGGTATTTTTCCAGACCAA 58.364 37.500 0.00 0.00 34.18 3.67
3581 4766 6.916440 TCCATATATGATGCTGCATTGTTTC 58.084 36.000 17.36 4.86 0.00 2.78
3629 4815 6.953101 TGCCAGTAGGTGATTCATACTTTTA 58.047 36.000 0.00 0.00 40.94 1.52
3741 6010 5.070446 ACACCTAATCCATATTCTGCGAGAA 59.930 40.000 0.00 1.85 38.78 2.87
3765 6034 4.948341 TCAAGCAGTCTTACTTGTGGTA 57.052 40.909 10.70 0.00 43.05 3.25
3973 6242 1.459592 CTCGTTGACATGAAACCCGTC 59.540 52.381 0.00 0.00 0.00 4.79
3975 6244 1.790755 TCTCGTTGACATGAAACCCG 58.209 50.000 0.00 0.00 0.00 5.28
4020 6289 4.034510 GCTCTGTTATGGAAATCCTTCACG 59.965 45.833 0.44 0.00 36.82 4.35
4024 6293 3.950395 GCAGCTCTGTTATGGAAATCCTT 59.050 43.478 0.44 0.00 36.82 3.36
4188 6458 7.224362 TGAATCAATTGAAACAAGATTGCGTTT 59.776 29.630 13.09 0.00 38.02 3.60
4231 6501 4.202223 GGATGTTACATACCCGTGTCATCT 60.202 45.833 0.00 0.00 34.15 2.90
4232 6502 4.056050 GGATGTTACATACCCGTGTCATC 58.944 47.826 0.00 0.00 33.62 2.92
4269 6541 1.889829 CCGCCCAAAACACTGGAATAA 59.110 47.619 0.00 0.00 38.96 1.40
4270 6542 1.540267 CCGCCCAAAACACTGGAATA 58.460 50.000 0.00 0.00 38.96 1.75
4323 7584 4.691860 TGTACTCCGTACTTCACTAAGC 57.308 45.455 5.83 0.00 39.49 3.09
4337 7598 5.239525 AGACAAACAAGCTGATTTGTACTCC 59.760 40.000 22.13 13.26 46.40 3.85
4338 7599 6.017934 TCAGACAAACAAGCTGATTTGTACTC 60.018 38.462 22.13 13.53 46.40 2.59
4340 7601 6.060028 TCAGACAAACAAGCTGATTTGTAC 57.940 37.500 22.13 16.74 46.40 2.90
4443 7704 0.250381 TCTCCTCCTCGCTCGTATCC 60.250 60.000 0.00 0.00 0.00 2.59
4569 7830 6.510157 CGTGCATCACATATTTGTCTAAGGTC 60.510 42.308 0.00 0.00 32.34 3.85
4593 7854 1.068474 GACGTCCAAACAGATCCACG 58.932 55.000 3.51 0.00 0.00 4.94
4638 7899 8.503196 CAATATTTTTATGTAGCAGCATACGGA 58.497 33.333 0.00 0.00 31.77 4.69
4660 7921 6.621316 AATACACGTCAAACCACAACAATA 57.379 33.333 0.00 0.00 0.00 1.90
4682 7943 7.094377 GGTCACCATATAAAGAGTGCTTCAAAA 60.094 37.037 0.00 0.00 31.82 2.44
4700 7961 0.036952 CTGCTCTCGTTGGTCACCAT 60.037 55.000 0.00 0.00 31.53 3.55
4701 7962 1.367471 CTGCTCTCGTTGGTCACCA 59.633 57.895 0.00 0.00 0.00 4.17
4705 7966 1.230324 AAAAGCTGCTCTCGTTGGTC 58.770 50.000 1.00 0.00 0.00 4.02
4711 7972 2.913613 CACAAGAAAAAGCTGCTCTCG 58.086 47.619 1.00 0.00 0.00 4.04
4719 7980 9.237846 GAATATATAGGTTGCACAAGAAAAAGC 57.762 33.333 0.00 0.00 0.00 3.51
4806 8068 3.961480 AAAAATAGAGCCAAAGGGTGC 57.039 42.857 0.00 0.00 36.17 5.01
4838 8100 8.974060 ACGGAGGAAATATTATTTCTTTGCTA 57.026 30.769 22.26 0.00 31.77 3.49
4921 8202 3.339141 CTTTGTTTCAGTCTCCTAGGCC 58.661 50.000 2.96 0.00 0.00 5.19
4922 8203 2.744741 GCTTTGTTTCAGTCTCCTAGGC 59.255 50.000 2.96 0.00 0.00 3.93
4953 8234 2.084546 AGTTTTCCGCCACTTATCTGC 58.915 47.619 0.00 0.00 0.00 4.26
4956 8237 2.612672 GGCTAGTTTTCCGCCACTTATC 59.387 50.000 0.00 0.00 43.25 1.75
4959 8240 0.400594 AGGCTAGTTTTCCGCCACTT 59.599 50.000 2.12 0.00 46.14 3.16
4961 8242 1.199327 GAAAGGCTAGTTTTCCGCCAC 59.801 52.381 2.12 0.00 46.14 5.01
4981 8262 3.773117 AAAAATGGCAGAAGCGACG 57.227 47.368 0.00 0.00 43.41 5.12
4997 8278 3.254892 GCAACCAAAACTGAACCGAAAA 58.745 40.909 0.00 0.00 0.00 2.29
5001 8282 1.555477 GTGCAACCAAAACTGAACCG 58.445 50.000 0.00 0.00 0.00 4.44
5013 8294 1.240256 TGTAAACCCATCGTGCAACC 58.760 50.000 0.00 0.00 0.00 3.77
5030 8311 2.159212 GGTGGCACGGTTTAACTTTTGT 60.159 45.455 12.17 0.00 0.00 2.83
5039 8320 4.906537 GGTGGGGTGGCACGGTTT 62.907 66.667 12.17 0.00 0.00 3.27
5046 8328 0.040499 TAATTCCTTGGTGGGGTGGC 59.960 55.000 0.00 0.00 36.20 5.01
5049 8331 2.310647 ACGATTAATTCCTTGGTGGGGT 59.689 45.455 0.00 0.00 36.20 4.95
5076 8358 3.096852 GGGAGGATGAAAACGGGAAAAT 58.903 45.455 0.00 0.00 0.00 1.82
5084 8366 5.694995 TCTCAATATGGGGAGGATGAAAAC 58.305 41.667 0.00 0.00 0.00 2.43
5098 8382 3.931468 CCCATAAGCGCTCTCTCAATATG 59.069 47.826 12.06 13.07 0.00 1.78
5112 8396 1.840635 AGTTGTCTCCTCCCCATAAGC 59.159 52.381 0.00 0.00 0.00 3.09
5132 8416 2.571212 ACAAGAGAAATTCACGCCACA 58.429 42.857 0.00 0.00 0.00 4.17
5135 8419 5.049680 TCTGTAAACAAGAGAAATTCACGCC 60.050 40.000 0.00 0.00 0.00 5.68
5276 8561 0.963856 TCGGCTCGCTTCAGTCCTTA 60.964 55.000 0.00 0.00 0.00 2.69
5280 8565 1.073768 GTCTTCGGCTCGCTTCAGTC 61.074 60.000 0.00 0.00 0.00 3.51
5349 8634 1.784525 GACTTCCCGACTGTCAACTG 58.215 55.000 8.73 0.00 0.00 3.16
5353 8638 1.848932 CGACGACTTCCCGACTGTCA 61.849 60.000 8.73 0.00 0.00 3.58
5393 8683 1.652563 GGACGGTTGTTGTTCTGGC 59.347 57.895 0.00 0.00 0.00 4.85
5411 8701 8.123639 TCTAATCTACCTTATTCTTCATCGGG 57.876 38.462 0.00 0.00 0.00 5.14
5468 8758 2.735444 GCTCGGATCTCGTCATTGTTCA 60.735 50.000 0.00 0.00 40.32 3.18
5475 8765 1.202417 GGATTTGCTCGGATCTCGTCA 60.202 52.381 0.00 0.00 40.32 4.35
5566 8856 4.862823 GTCTCCCCGCCTAGCCCT 62.863 72.222 0.00 0.00 0.00 5.19
5592 8882 0.810031 GCGGCGGCTTTCTGAAGATA 60.810 55.000 9.78 0.00 34.71 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.