Multiple sequence alignment - TraesCS7B01G157500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G157500 chr7B 100.000 2624 0 0 1 2624 212782657 212780034 0.000000e+00 4846.0
1 TraesCS7B01G157500 chr7B 89.762 840 72 9 867 1706 434357806 434358631 0.000000e+00 1062.0
2 TraesCS7B01G157500 chr7B 88.476 807 77 11 867 1666 433865882 433866679 0.000000e+00 961.0
3 TraesCS7B01G157500 chr7B 88.504 635 61 7 867 1496 434160266 434160893 0.000000e+00 758.0
4 TraesCS7B01G157500 chr7B 85.340 764 70 19 1857 2603 433867216 433867954 0.000000e+00 752.0
5 TraesCS7B01G157500 chr7B 93.130 262 18 0 2342 2603 434360563 434360824 4.100000e-103 385.0
6 TraesCS7B01G157500 chr7B 81.481 351 45 12 1982 2328 434166671 434167005 1.200000e-68 270.0
7 TraesCS7B01G157500 chr7B 83.387 313 30 13 2106 2406 434360259 434360561 1.200000e-68 270.0
8 TraesCS7B01G157500 chr7B 84.513 226 28 5 133 351 454528586 454528361 1.580000e-52 217.0
9 TraesCS7B01G157500 chr7B 76.538 260 41 15 402 647 603600105 603600358 9.860000e-25 124.0
10 TraesCS7B01G157500 chr7A 85.294 1258 132 32 435 1649 483484918 483486165 0.000000e+00 1249.0
11 TraesCS7B01G157500 chr7A 84.299 777 70 27 1852 2603 483486615 483487364 0.000000e+00 712.0
12 TraesCS7B01G157500 chr7A 89.011 455 27 8 793 1224 483756919 483757373 2.300000e-150 542.0
13 TraesCS7B01G157500 chr7A 86.400 375 43 7 2233 2603 483942797 483943167 1.130000e-108 403.0
14 TraesCS7B01G157500 chr7D 87.953 938 84 11 878 1798 418898774 418899699 0.000000e+00 1079.0
15 TraesCS7B01G157500 chr7D 87.646 939 77 16 878 1798 418389270 418390187 0.000000e+00 1055.0
16 TraesCS7B01G157500 chr7D 88.874 737 63 12 922 1655 449507984 449508704 0.000000e+00 889.0
17 TraesCS7B01G157500 chr7D 89.083 687 51 8 778 1440 418596615 418597301 0.000000e+00 832.0
18 TraesCS7B01G157500 chr7D 87.340 703 64 6 957 1649 418050787 418051474 0.000000e+00 782.0
19 TraesCS7B01G157500 chr7D 85.776 696 66 6 957 1649 417925794 417926459 0.000000e+00 706.0
20 TraesCS7B01G157500 chr7D 83.761 702 68 20 1922 2603 417926661 417927336 7.980000e-175 623.0
21 TraesCS7B01G157500 chr7D 85.016 634 67 16 1982 2603 418611990 418612607 1.030000e-173 619.0
22 TraesCS7B01G157500 chr7D 84.700 634 60 21 1982 2603 418899839 418900447 1.340000e-167 599.0
23 TraesCS7B01G157500 chr7D 82.553 705 66 28 1922 2603 418051676 418052346 3.790000e-158 568.0
24 TraesCS7B01G157500 chr7D 84.722 504 66 9 2106 2603 418392875 418393373 6.520000e-136 494.0
25 TraesCS7B01G157500 chr7D 84.737 380 35 8 1436 1798 418611444 418611817 2.480000e-95 359.0
26 TraesCS7B01G157500 chr7D 86.435 317 41 2 1977 2291 449542471 449542787 1.930000e-91 346.0
27 TraesCS7B01G157500 chr7D 81.063 301 38 12 412 695 167552171 167552469 3.400000e-54 222.0
28 TraesCS7B01G157500 chr7D 83.539 243 35 5 121 359 428711364 428711605 3.400000e-54 222.0
29 TraesCS7B01G157500 chr7D 82.759 232 35 5 133 360 26835714 26835484 4.430000e-48 202.0
30 TraesCS7B01G157500 chr7D 95.413 109 5 0 642 750 418397707 418397815 9.650000e-40 174.0
31 TraesCS7B01G157500 chr7D 77.068 266 37 17 402 652 556323162 556323418 5.890000e-27 132.0
32 TraesCS7B01G157500 chr6D 87.179 234 24 6 124 354 131608728 131608958 7.200000e-66 261.0
33 TraesCS7B01G157500 chr2D 85.356 239 28 7 121 353 23479860 23479623 9.380000e-60 241.0
34 TraesCS7B01G157500 chr2D 76.400 250 38 12 412 653 606682254 606682490 5.930000e-22 115.0
35 TraesCS7B01G157500 chr2D 83.784 74 9 2 355 426 507218007 507218079 1.690000e-07 67.6
36 TraesCS7B01G157500 chr2B 85.294 238 27 6 124 353 693317412 693317175 3.380000e-59 239.0
37 TraesCS7B01G157500 chr4B 84.519 239 31 6 126 360 89454804 89455040 5.650000e-57 231.0
38 TraesCS7B01G157500 chr1B 83.966 237 31 5 125 359 37566262 37566031 1.220000e-53 220.0
39 TraesCS7B01G157500 chr2A 83.193 238 32 5 124 355 280100709 280100474 7.360000e-51 211.0
40 TraesCS7B01G157500 chr2A 76.050 238 35 14 426 653 738279827 738280052 1.280000e-18 104.0
41 TraesCS7B01G157500 chr1D 83.981 206 19 6 427 624 329498668 329498867 4.460000e-43 185.0
42 TraesCS7B01G157500 chr1D 89.855 69 4 1 412 480 395799675 395799740 4.650000e-13 86.1
43 TraesCS7B01G157500 chr1D 94.000 50 3 0 402 451 395631446 395631495 2.800000e-10 76.8
44 TraesCS7B01G157500 chr1A 87.324 71 6 2 412 481 489928024 489928092 7.790000e-11 78.7
45 TraesCS7B01G157500 chr1A 87.324 71 6 2 412 481 490088784 490088852 7.790000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G157500 chr7B 212780034 212782657 2623 True 4846.000000 4846 100.000000 1 2624 1 chr7B.!!$R1 2623
1 TraesCS7B01G157500 chr7B 433865882 433867954 2072 False 856.500000 961 86.908000 867 2603 2 chr7B.!!$F4 1736
2 TraesCS7B01G157500 chr7B 434160266 434160893 627 False 758.000000 758 88.504000 867 1496 1 chr7B.!!$F1 629
3 TraesCS7B01G157500 chr7B 434357806 434360824 3018 False 572.333333 1062 88.759667 867 2603 3 chr7B.!!$F5 1736
4 TraesCS7B01G157500 chr7A 483484918 483487364 2446 False 980.500000 1249 84.796500 435 2603 2 chr7A.!!$F3 2168
5 TraesCS7B01G157500 chr7D 449507984 449508704 720 False 889.000000 889 88.874000 922 1655 1 chr7D.!!$F5 733
6 TraesCS7B01G157500 chr7D 418898774 418900447 1673 False 839.000000 1079 86.326500 878 2603 2 chr7D.!!$F12 1725
7 TraesCS7B01G157500 chr7D 418596615 418597301 686 False 832.000000 832 89.083000 778 1440 1 chr7D.!!$F3 662
8 TraesCS7B01G157500 chr7D 418389270 418393373 4103 False 774.500000 1055 86.184000 878 2603 2 chr7D.!!$F10 1725
9 TraesCS7B01G157500 chr7D 418050787 418052346 1559 False 675.000000 782 84.946500 957 2603 2 chr7D.!!$F9 1646
10 TraesCS7B01G157500 chr7D 417925794 417927336 1542 False 664.500000 706 84.768500 957 2603 2 chr7D.!!$F8 1646
11 TraesCS7B01G157500 chr7D 418611444 418612607 1163 False 489.000000 619 84.876500 1436 2603 2 chr7D.!!$F11 1167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 324 0.319297 AGGACGGTGTTACTTCGTGC 60.319 55.0 12.23 12.23 43.66 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1956 0.179073 ATCATTCAACGGCTCCCTCG 60.179 55.0 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 8.924511 TTATCTAGAGGATGGCATTTTTAAGG 57.075 34.615 0.00 0.00 35.98 2.69
126 127 6.575244 TCTAGAGGATGGCATTTTTAAGGA 57.425 37.500 0.00 0.00 0.00 3.36
127 128 6.357367 TCTAGAGGATGGCATTTTTAAGGAC 58.643 40.000 0.00 0.00 0.00 3.85
128 129 4.281657 AGAGGATGGCATTTTTAAGGACC 58.718 43.478 0.00 0.00 0.00 4.46
129 130 3.023832 AGGATGGCATTTTTAAGGACCG 58.976 45.455 0.00 0.00 0.00 4.79
130 131 2.758423 GGATGGCATTTTTAAGGACCGT 59.242 45.455 0.00 0.00 0.00 4.83
131 132 3.949113 GGATGGCATTTTTAAGGACCGTA 59.051 43.478 0.00 0.00 0.00 4.02
132 133 4.399934 GGATGGCATTTTTAAGGACCGTAA 59.600 41.667 0.00 0.00 0.00 3.18
133 134 5.068591 GGATGGCATTTTTAAGGACCGTAAT 59.931 40.000 0.00 0.00 0.00 1.89
134 135 6.263617 GGATGGCATTTTTAAGGACCGTAATA 59.736 38.462 0.00 0.00 0.00 0.98
135 136 7.201839 GGATGGCATTTTTAAGGACCGTAATAA 60.202 37.037 0.00 3.45 0.00 1.40
136 137 7.090953 TGGCATTTTTAAGGACCGTAATAAG 57.909 36.000 0.40 0.10 0.00 1.73
137 138 6.660094 TGGCATTTTTAAGGACCGTAATAAGT 59.340 34.615 0.40 0.00 0.00 2.24
138 139 6.970613 GGCATTTTTAAGGACCGTAATAAGTG 59.029 38.462 0.40 6.87 0.00 3.16
139 140 6.471198 GCATTTTTAAGGACCGTAATAAGTGC 59.529 38.462 17.09 17.09 0.00 4.40
140 141 6.499234 TTTTTAAGGACCGTAATAAGTGCC 57.501 37.500 0.40 0.00 0.00 5.01
141 142 4.822685 TTAAGGACCGTAATAAGTGCCA 57.177 40.909 0.00 0.00 0.00 4.92
142 143 2.685850 AGGACCGTAATAAGTGCCAC 57.314 50.000 0.00 0.00 0.00 5.01
143 144 1.903860 AGGACCGTAATAAGTGCCACA 59.096 47.619 0.00 0.00 0.00 4.17
144 145 2.004733 GGACCGTAATAAGTGCCACAC 58.995 52.381 0.00 0.00 34.10 3.82
145 146 1.657094 GACCGTAATAAGTGCCACACG 59.343 52.381 0.00 0.00 39.64 4.49
146 147 1.001181 ACCGTAATAAGTGCCACACGT 59.999 47.619 0.00 0.00 39.64 4.49
147 148 1.392168 CCGTAATAAGTGCCACACGTG 59.608 52.381 15.48 15.48 39.64 4.49
148 149 2.063266 CGTAATAAGTGCCACACGTGT 58.937 47.619 17.22 17.22 39.64 4.49
149 150 2.159894 CGTAATAAGTGCCACACGTGTG 60.160 50.000 36.13 36.13 45.23 3.82
167 168 3.056328 GCACGAAGCAGTTCCCCC 61.056 66.667 0.00 0.00 44.79 5.40
168 169 2.750350 CACGAAGCAGTTCCCCCT 59.250 61.111 0.00 0.00 0.00 4.79
169 170 1.672356 CACGAAGCAGTTCCCCCTG 60.672 63.158 0.00 0.00 35.49 4.45
170 171 1.841556 ACGAAGCAGTTCCCCCTGA 60.842 57.895 0.00 0.00 34.23 3.86
171 172 1.376037 CGAAGCAGTTCCCCCTGAC 60.376 63.158 0.00 0.00 34.23 3.51
172 173 1.376037 GAAGCAGTTCCCCCTGACG 60.376 63.158 0.00 0.00 34.23 4.35
173 174 2.113243 GAAGCAGTTCCCCCTGACGT 62.113 60.000 0.00 0.00 34.23 4.34
174 175 1.705997 AAGCAGTTCCCCCTGACGTT 61.706 55.000 0.00 0.00 34.23 3.99
175 176 1.228154 GCAGTTCCCCCTGACGTTT 60.228 57.895 0.00 0.00 34.23 3.60
176 177 0.822121 GCAGTTCCCCCTGACGTTTT 60.822 55.000 0.00 0.00 34.23 2.43
177 178 1.687563 CAGTTCCCCCTGACGTTTTT 58.312 50.000 0.00 0.00 34.23 1.94
206 207 8.722480 TGACAAGTTTAGTTATCTGATGATGG 57.278 34.615 0.00 0.00 34.32 3.51
207 208 7.280876 TGACAAGTTTAGTTATCTGATGATGGC 59.719 37.037 0.00 0.00 34.32 4.40
208 209 7.112122 ACAAGTTTAGTTATCTGATGATGGCA 58.888 34.615 0.00 0.00 34.32 4.92
209 210 7.611467 ACAAGTTTAGTTATCTGATGATGGCAA 59.389 33.333 0.00 0.00 34.32 4.52
210 211 7.559590 AGTTTAGTTATCTGATGATGGCAAC 57.440 36.000 0.00 0.00 34.32 4.17
211 212 7.341805 AGTTTAGTTATCTGATGATGGCAACT 58.658 34.615 0.00 3.71 34.91 3.16
212 213 7.831193 AGTTTAGTTATCTGATGATGGCAACTT 59.169 33.333 0.00 0.00 33.54 2.66
213 214 8.462016 GTTTAGTTATCTGATGATGGCAACTTT 58.538 33.333 0.00 0.00 33.54 2.66
214 215 9.679661 TTTAGTTATCTGATGATGGCAACTTTA 57.320 29.630 0.00 0.00 33.54 1.85
215 216 7.798596 AGTTATCTGATGATGGCAACTTTAG 57.201 36.000 0.00 0.00 29.54 1.85
216 217 7.341805 AGTTATCTGATGATGGCAACTTTAGT 58.658 34.615 0.00 0.00 29.54 2.24
217 218 7.831193 AGTTATCTGATGATGGCAACTTTAGTT 59.169 33.333 0.00 0.00 34.96 2.24
218 219 7.558161 TATCTGATGATGGCAACTTTAGTTG 57.442 36.000 16.36 16.36 43.87 3.16
219 220 7.112122 TATCTGATGATGGCAACTTTAGTTGT 58.888 34.615 20.31 4.58 43.48 3.32
220 221 7.066163 TATCTGATGATGGCAACTTTAGTTGTG 59.934 37.037 20.31 1.54 43.48 3.33
240 241 6.449635 TGTGAAGCACAACAACTTTCTATT 57.550 33.333 0.00 0.00 41.69 1.73
241 242 6.862209 TGTGAAGCACAACAACTTTCTATTT 58.138 32.000 0.00 0.00 41.69 1.40
242 243 6.751425 TGTGAAGCACAACAACTTTCTATTTG 59.249 34.615 0.00 0.00 41.69 2.32
243 244 6.972328 GTGAAGCACAACAACTTTCTATTTGA 59.028 34.615 0.00 0.00 34.08 2.69
244 245 7.649306 GTGAAGCACAACAACTTTCTATTTGAT 59.351 33.333 0.00 0.00 34.08 2.57
245 246 7.648908 TGAAGCACAACAACTTTCTATTTGATG 59.351 33.333 0.00 0.00 33.13 3.07
246 247 6.449698 AGCACAACAACTTTCTATTTGATGG 58.550 36.000 0.00 0.00 31.63 3.51
247 248 5.119125 GCACAACAACTTTCTATTTGATGGC 59.881 40.000 0.00 0.00 31.63 4.40
248 249 6.215121 CACAACAACTTTCTATTTGATGGCA 58.785 36.000 0.00 0.00 31.63 4.92
249 250 6.700960 CACAACAACTTTCTATTTGATGGCAA 59.299 34.615 0.00 0.00 31.63 4.52
250 251 6.925165 ACAACAACTTTCTATTTGATGGCAAG 59.075 34.615 0.00 0.00 35.04 4.01
251 252 6.655078 ACAACTTTCTATTTGATGGCAAGT 57.345 33.333 0.00 0.00 35.04 3.16
252 253 7.054491 ACAACTTTCTATTTGATGGCAAGTT 57.946 32.000 0.00 0.00 34.29 2.66
253 254 7.500141 ACAACTTTCTATTTGATGGCAAGTTT 58.500 30.769 0.00 0.00 32.69 2.66
254 255 7.653311 ACAACTTTCTATTTGATGGCAAGTTTC 59.347 33.333 0.00 0.00 32.69 2.78
255 256 7.288810 ACTTTCTATTTGATGGCAAGTTTCA 57.711 32.000 0.00 0.00 35.04 2.69
256 257 7.373493 ACTTTCTATTTGATGGCAAGTTTCAG 58.627 34.615 0.00 0.00 35.04 3.02
257 258 6.899393 TTCTATTTGATGGCAAGTTTCAGT 57.101 33.333 0.00 0.00 35.04 3.41
258 259 6.899393 TCTATTTGATGGCAAGTTTCAGTT 57.101 33.333 0.00 0.00 35.04 3.16
259 260 7.288810 TCTATTTGATGGCAAGTTTCAGTTT 57.711 32.000 0.00 0.00 35.04 2.66
260 261 7.725251 TCTATTTGATGGCAAGTTTCAGTTTT 58.275 30.769 0.00 0.00 35.04 2.43
261 262 8.203485 TCTATTTGATGGCAAGTTTCAGTTTTT 58.797 29.630 0.00 0.00 35.04 1.94
297 298 8.954950 TTTTTGATGGAAATTTTAGTTGCAGA 57.045 26.923 0.00 0.00 29.33 4.26
298 299 8.954950 TTTTGATGGAAATTTTAGTTGCAGAA 57.045 26.923 0.00 0.00 29.33 3.02
299 300 8.954950 TTTGATGGAAATTTTAGTTGCAGAAA 57.045 26.923 0.00 0.00 29.33 2.52
300 301 9.558396 TTTGATGGAAATTTTAGTTGCAGAAAT 57.442 25.926 0.00 0.00 29.33 2.17
301 302 8.537049 TGATGGAAATTTTAGTTGCAGAAATG 57.463 30.769 0.00 0.00 29.33 2.32
302 303 8.149647 TGATGGAAATTTTAGTTGCAGAAATGT 58.850 29.630 0.00 0.00 29.33 2.71
303 304 7.945033 TGGAAATTTTAGTTGCAGAAATGTC 57.055 32.000 0.00 7.83 0.00 3.06
304 305 7.495901 TGGAAATTTTAGTTGCAGAAATGTCA 58.504 30.769 14.01 6.39 31.56 3.58
305 306 7.652909 TGGAAATTTTAGTTGCAGAAATGTCAG 59.347 33.333 14.01 0.00 31.56 3.51
306 307 7.116805 GGAAATTTTAGTTGCAGAAATGTCAGG 59.883 37.037 14.01 0.00 31.56 3.86
307 308 6.899393 ATTTTAGTTGCAGAAATGTCAGGA 57.101 33.333 0.00 0.00 0.00 3.86
308 309 5.689383 TTTAGTTGCAGAAATGTCAGGAC 57.311 39.130 0.00 0.00 0.00 3.85
309 310 2.146342 AGTTGCAGAAATGTCAGGACG 58.854 47.619 0.00 0.00 0.00 4.79
310 311 1.197721 GTTGCAGAAATGTCAGGACGG 59.802 52.381 0.00 0.00 0.00 4.79
311 312 0.396435 TGCAGAAATGTCAGGACGGT 59.604 50.000 0.00 0.00 0.00 4.83
312 313 0.798776 GCAGAAATGTCAGGACGGTG 59.201 55.000 0.00 0.00 0.00 4.94
313 314 1.878102 GCAGAAATGTCAGGACGGTGT 60.878 52.381 0.00 0.00 0.00 4.16
314 315 2.494059 CAGAAATGTCAGGACGGTGTT 58.506 47.619 0.00 0.00 0.00 3.32
315 316 3.659786 CAGAAATGTCAGGACGGTGTTA 58.340 45.455 0.00 0.00 0.00 2.41
316 317 3.432252 CAGAAATGTCAGGACGGTGTTAC 59.568 47.826 0.00 0.00 0.00 2.50
317 318 3.323979 AGAAATGTCAGGACGGTGTTACT 59.676 43.478 0.00 0.00 0.00 2.24
318 319 3.764237 AATGTCAGGACGGTGTTACTT 57.236 42.857 0.00 0.00 0.00 2.24
319 320 2.806608 TGTCAGGACGGTGTTACTTC 57.193 50.000 0.00 0.00 0.00 3.01
320 321 1.001048 TGTCAGGACGGTGTTACTTCG 60.001 52.381 0.00 0.00 0.00 3.79
321 322 1.000938 GTCAGGACGGTGTTACTTCGT 60.001 52.381 3.72 3.72 39.99 3.85
322 323 1.001048 TCAGGACGGTGTTACTTCGTG 60.001 52.381 8.02 0.89 37.25 4.35
323 324 0.319297 AGGACGGTGTTACTTCGTGC 60.319 55.000 12.23 12.23 43.66 5.34
324 325 1.287041 GGACGGTGTTACTTCGTGCC 61.287 60.000 8.02 6.21 38.87 5.01
325 326 0.598158 GACGGTGTTACTTCGTGCCA 60.598 55.000 8.02 0.00 37.25 4.92
326 327 0.877213 ACGGTGTTACTTCGTGCCAC 60.877 55.000 3.33 0.00 35.70 5.01
327 328 0.876777 CGGTGTTACTTCGTGCCACA 60.877 55.000 0.00 0.00 0.00 4.17
328 329 0.584876 GGTGTTACTTCGTGCCACAC 59.415 55.000 0.00 0.00 37.59 3.82
348 349 5.698832 ACACGTGTGACATTTATCATTTGG 58.301 37.500 22.71 0.00 0.00 3.28
349 350 5.094812 CACGTGTGACATTTATCATTTGGG 58.905 41.667 7.58 0.00 0.00 4.12
350 351 4.764823 ACGTGTGACATTTATCATTTGGGT 59.235 37.500 0.00 0.00 0.00 4.51
351 352 5.941058 ACGTGTGACATTTATCATTTGGGTA 59.059 36.000 0.00 0.00 0.00 3.69
352 353 6.431543 ACGTGTGACATTTATCATTTGGGTAA 59.568 34.615 0.00 0.00 0.00 2.85
353 354 7.040340 ACGTGTGACATTTATCATTTGGGTAAA 60.040 33.333 0.00 0.00 0.00 2.01
354 355 7.973388 CGTGTGACATTTATCATTTGGGTAAAT 59.027 33.333 0.00 0.00 36.97 1.40
355 356 9.651913 GTGTGACATTTATCATTTGGGTAAATT 57.348 29.630 0.00 0.00 34.34 1.82
371 372 9.717942 TTGGGTAAATTTTTAATGGAATGACAG 57.282 29.630 0.00 0.00 0.00 3.51
372 373 8.875168 TGGGTAAATTTTTAATGGAATGACAGT 58.125 29.630 0.00 0.00 0.00 3.55
373 374 9.719355 GGGTAAATTTTTAATGGAATGACAGTT 57.281 29.630 0.00 0.00 0.00 3.16
384 385 8.620116 AATGGAATGACAGTTTTATTTTTGGG 57.380 30.769 0.00 0.00 0.00 4.12
385 386 6.529220 TGGAATGACAGTTTTATTTTTGGGG 58.471 36.000 0.00 0.00 0.00 4.96
386 387 5.411361 GGAATGACAGTTTTATTTTTGGGGC 59.589 40.000 0.00 0.00 0.00 5.80
387 388 5.559148 ATGACAGTTTTATTTTTGGGGCA 57.441 34.783 0.00 0.00 0.00 5.36
388 389 5.559148 TGACAGTTTTATTTTTGGGGCAT 57.441 34.783 0.00 0.00 0.00 4.40
389 390 6.672266 TGACAGTTTTATTTTTGGGGCATA 57.328 33.333 0.00 0.00 0.00 3.14
390 391 7.251321 TGACAGTTTTATTTTTGGGGCATAT 57.749 32.000 0.00 0.00 0.00 1.78
391 392 7.327214 TGACAGTTTTATTTTTGGGGCATATC 58.673 34.615 0.00 0.00 0.00 1.63
392 393 6.649155 ACAGTTTTATTTTTGGGGCATATCC 58.351 36.000 0.00 0.00 0.00 2.59
393 394 6.214412 ACAGTTTTATTTTTGGGGCATATCCA 59.786 34.615 0.00 0.00 36.21 3.41
394 395 7.108847 CAGTTTTATTTTTGGGGCATATCCAA 58.891 34.615 0.00 0.00 41.97 3.53
429 430 7.756395 ATCTAGAGGATGGCATGTTTTAATG 57.244 36.000 3.81 0.00 32.69 1.90
430 431 6.662755 TCTAGAGGATGGCATGTTTTAATGT 58.337 36.000 3.81 0.00 0.00 2.71
431 432 7.118723 TCTAGAGGATGGCATGTTTTAATGTT 58.881 34.615 3.81 0.00 0.00 2.71
432 433 6.610075 AGAGGATGGCATGTTTTAATGTTT 57.390 33.333 3.81 0.00 0.00 2.83
433 434 6.400568 AGAGGATGGCATGTTTTAATGTTTG 58.599 36.000 3.81 0.00 0.00 2.93
442 443 6.532657 GCATGTTTTAATGTTTGAGAGGATGG 59.467 38.462 0.00 0.00 0.00 3.51
453 454 7.504403 TGTTTGAGAGGATGGCATTTTTAAAA 58.496 30.769 0.00 0.00 0.00 1.52
456 457 9.571816 TTTGAGAGGATGGCATTTTTAAAATTT 57.428 25.926 0.00 0.00 0.00 1.82
482 483 4.841422 TGGCATGACATTTTTATTTGGGG 58.159 39.130 0.00 0.00 0.00 4.96
489 490 5.163499 TGACATTTTTATTTGGGGCGTATCC 60.163 40.000 0.00 0.00 0.00 2.59
491 492 5.187967 ACATTTTTATTTGGGGCGTATCCAA 59.812 36.000 2.89 2.89 41.97 3.53
534 535 8.989131 AGAGGATGGTAGTTTTATAAAGTAGCA 58.011 33.333 16.58 16.58 0.00 3.49
535 536 9.780186 GAGGATGGTAGTTTTATAAAGTAGCAT 57.220 33.333 22.03 22.03 33.64 3.79
537 538 9.555727 GGATGGTAGTTTTATAAAGTAGCATGA 57.444 33.333 24.81 6.74 32.34 3.07
626 627 9.496873 TTTTATCTCGAGGATGACAGTTTTAAA 57.503 29.630 13.56 0.00 35.98 1.52
627 628 6.969828 ATCTCGAGGATGACAGTTTTAAAC 57.030 37.500 13.56 0.00 32.69 2.01
641 642 9.093970 GACAGTTTTAAACTTTTAGTTTGGCAT 57.906 29.630 7.71 0.00 46.83 4.40
678 685 7.628769 ATTTTGTTCATGGCATTTTTATCCC 57.371 32.000 0.00 0.00 0.00 3.85
686 693 3.117701 TGGCATTTTTATCCCGAGGATGA 60.118 43.478 13.77 4.84 43.06 2.92
751 761 1.447314 CAAACCGAGGGTCGCTACC 60.447 63.158 0.00 0.00 45.97 3.18
776 791 5.759506 TTTTAGCAACAAGTCCAAATCGA 57.240 34.783 0.00 0.00 0.00 3.59
777 792 5.957842 TTTAGCAACAAGTCCAAATCGAT 57.042 34.783 0.00 0.00 0.00 3.59
778 793 5.957842 TTAGCAACAAGTCCAAATCGATT 57.042 34.783 4.39 4.39 0.00 3.34
779 794 4.164822 AGCAACAAGTCCAAATCGATTG 57.835 40.909 12.25 6.05 38.84 2.67
780 795 3.569701 AGCAACAAGTCCAAATCGATTGT 59.430 39.130 12.25 1.60 37.32 2.71
867 907 1.475441 GAAATCAGCTCCGAGTCGCG 61.475 60.000 7.12 0.00 40.47 5.87
868 908 1.934220 AAATCAGCTCCGAGTCGCGA 61.934 55.000 3.71 3.71 44.57 5.87
869 909 1.729470 AATCAGCTCCGAGTCGCGAT 61.729 55.000 14.06 0.47 44.57 4.58
870 910 2.123988 ATCAGCTCCGAGTCGCGATC 62.124 60.000 14.06 10.23 44.57 3.69
871 911 2.515057 AGCTCCGAGTCGCGATCT 60.515 61.111 14.06 11.78 44.57 2.75
1128 1208 1.985116 GTTCGAGCTGGAGGAGGGT 60.985 63.158 0.00 0.00 0.00 4.34
1140 1220 2.808206 GGAGGGTGGCGGAATCGAT 61.808 63.158 0.00 0.00 39.00 3.59
1143 1223 2.203070 GGTGGCGGAATCGATGCT 60.203 61.111 2.72 0.00 39.00 3.79
1214 1294 0.540365 CACATGTGGGGCTGGTTCTT 60.540 55.000 18.51 0.00 0.00 2.52
1452 1544 1.068753 CTACATCAGGGCTCTGGCG 59.931 63.158 15.13 7.73 41.23 5.69
1524 1616 2.651361 CTGTCCGCCTTCTGTCGT 59.349 61.111 0.00 0.00 0.00 4.34
1547 1639 5.045831 TGGGCATGATGGGTATATTAGGAT 58.954 41.667 0.00 0.00 0.00 3.24
1559 1651 7.179269 GGGTATATTAGGATGTTTATGCCCAA 58.821 38.462 9.28 0.00 42.97 4.12
1612 1704 0.946221 CGCGTGGGAGGAAGATATGC 60.946 60.000 0.00 0.00 0.00 3.14
1694 1982 1.672881 AGCCGTTGAATGATTAGCTGC 59.327 47.619 0.00 0.00 0.00 5.25
1707 1995 6.196079 TGATTAGCTGCTACGAGTATATGG 57.804 41.667 9.27 0.00 0.00 2.74
1718 2270 9.239551 TGCTACGAGTATATGGACAAGTAATAT 57.760 33.333 0.00 0.00 0.00 1.28
1752 2304 7.267600 CCGTGTTTACTGTTTGTCGATATTTTC 59.732 37.037 0.00 0.00 0.00 2.29
1754 2306 9.659830 GTGTTTACTGTTTGTCGATATTTTCTT 57.340 29.630 0.00 0.00 0.00 2.52
1755 2307 9.872757 TGTTTACTGTTTGTCGATATTTTCTTC 57.127 29.630 0.00 0.00 0.00 2.87
1761 2313 6.712998 TGTTTGTCGATATTTTCTTCCCTTCA 59.287 34.615 0.00 0.00 0.00 3.02
1764 2316 4.270325 GTCGATATTTTCTTCCCTTCACGG 59.730 45.833 0.00 0.00 0.00 4.94
1775 2327 2.232941 TCCCTTCACGGTCTCAATGTAC 59.767 50.000 0.00 0.00 0.00 2.90
1798 2354 4.279671 CCTCTATTGACAGACCGAAGCTAT 59.720 45.833 0.00 0.00 0.00 2.97
1799 2355 5.221342 CCTCTATTGACAGACCGAAGCTATT 60.221 44.000 0.00 0.00 0.00 1.73
1805 2394 3.362706 ACAGACCGAAGCTATTGGAGTA 58.637 45.455 5.86 0.00 0.00 2.59
1811 2445 3.372954 CGAAGCTATTGGAGTAACTCGG 58.627 50.000 0.00 0.00 0.00 4.63
1834 2484 5.106987 GGTTTGATGCCATGTTTTGATCAAC 60.107 40.000 7.89 0.00 31.71 3.18
1852 2502 4.619973 TCAACATTGGCAAGCAAACTTAG 58.380 39.130 5.96 0.00 33.74 2.18
1854 2504 2.364970 ACATTGGCAAGCAAACTTAGCA 59.635 40.909 5.96 0.00 33.74 3.49
1855 2505 3.007182 ACATTGGCAAGCAAACTTAGCAT 59.993 39.130 5.96 0.00 33.74 3.79
1896 4195 2.887152 AGAGCAAAGTTTGGGTCATGAC 59.113 45.455 17.91 17.91 34.11 3.06
1929 4666 3.569701 AGCATTCGTTTTGGTCATCAACT 59.430 39.130 0.00 0.00 34.67 3.16
1961 4698 2.363306 TGCCATCACTTGTTCACCTT 57.637 45.000 0.00 0.00 0.00 3.50
1978 4867 2.176045 CCTTTTCACCCCCACCATAAC 58.824 52.381 0.00 0.00 0.00 1.89
1989 4881 4.252878 CCCCACCATAACAAGAAAAATGC 58.747 43.478 0.00 0.00 0.00 3.56
1994 4886 6.146021 CCACCATAACAAGAAAAATGCAGTTC 59.854 38.462 0.00 0.00 0.00 3.01
2058 4950 8.330302 GCATTTTGGCTAAATTTATGACATCAC 58.670 33.333 9.21 0.00 34.19 3.06
2061 4953 6.135290 TGGCTAAATTTATGACATCACAGC 57.865 37.500 0.00 0.00 0.00 4.40
2064 4956 7.720957 TGGCTAAATTTATGACATCACAGCTAT 59.279 33.333 0.00 0.00 0.00 2.97
2065 4957 8.571336 GGCTAAATTTATGACATCACAGCTATT 58.429 33.333 0.00 0.00 0.00 1.73
2072 4970 5.756195 TGACATCACAGCTATTAAATGGC 57.244 39.130 0.00 0.00 36.97 4.40
2073 4971 5.192176 TGACATCACAGCTATTAAATGGCA 58.808 37.500 0.00 0.00 39.48 4.92
2081 4983 7.973388 TCACAGCTATTAAATGGCAATACAAAC 59.027 33.333 0.00 0.00 39.48 2.93
2082 4984 7.975616 CACAGCTATTAAATGGCAATACAAACT 59.024 33.333 0.00 0.00 39.48 2.66
2095 4997 8.892723 TGGCAATACAAACTAGAAATATCACAG 58.107 33.333 0.00 0.00 0.00 3.66
2146 6314 6.100279 TGCTACAAGGATCAGACTTCCATAAT 59.900 38.462 0.00 0.00 35.59 1.28
2147 6315 6.995091 GCTACAAGGATCAGACTTCCATAATT 59.005 38.462 0.00 0.00 35.59 1.40
2148 6316 7.041508 GCTACAAGGATCAGACTTCCATAATTG 60.042 40.741 0.00 0.00 35.59 2.32
2149 6317 6.125029 ACAAGGATCAGACTTCCATAATTGG 58.875 40.000 0.00 0.00 45.15 3.16
2150 6318 4.723309 AGGATCAGACTTCCATAATTGGC 58.277 43.478 0.00 0.00 43.29 4.52
2151 6319 4.414846 AGGATCAGACTTCCATAATTGGCT 59.585 41.667 0.00 0.00 43.29 4.75
2152 6320 4.759183 GGATCAGACTTCCATAATTGGCTC 59.241 45.833 0.00 0.00 43.29 4.70
2153 6321 4.842531 TCAGACTTCCATAATTGGCTCA 57.157 40.909 0.00 0.00 43.29 4.26
2154 6322 5.178096 TCAGACTTCCATAATTGGCTCAA 57.822 39.130 0.00 0.00 43.29 3.02
2159 6327 6.267471 AGACTTCCATAATTGGCTCAAACAAA 59.733 34.615 0.00 0.00 43.29 2.83
2236 6408 7.178274 ACAATGTCAGTGCTTTTTGGGAATATA 59.822 33.333 0.00 0.00 0.00 0.86
2250 6422 5.918608 TGGGAATATAAGAGAACTGAGTGC 58.081 41.667 0.00 0.00 0.00 4.40
2310 6494 4.021016 AGAGAATAGCGAAGAAACAGTGGT 60.021 41.667 0.00 0.00 0.00 4.16
2312 6496 5.169295 AGAATAGCGAAGAAACAGTGGTAC 58.831 41.667 0.00 0.00 0.00 3.34
2313 6497 2.902705 AGCGAAGAAACAGTGGTACA 57.097 45.000 0.00 0.00 0.00 2.90
2335 6526 4.156922 CACCGGTAACAATGCAATTTCCTA 59.843 41.667 6.87 0.00 31.22 2.94
2339 6530 6.485313 CCGGTAACAATGCAATTTCCTATAGA 59.515 38.462 0.00 0.00 31.22 1.98
2340 6531 7.012894 CCGGTAACAATGCAATTTCCTATAGAA 59.987 37.037 0.00 0.00 31.22 2.10
2350 6541 7.973388 TGCAATTTCCTATAGAATTTTTCACCG 59.027 33.333 0.00 0.00 33.44 4.94
2355 6546 5.353123 TCCTATAGAATTTTTCACCGCACAC 59.647 40.000 0.00 0.00 0.00 3.82
2358 6549 3.641648 AGAATTTTTCACCGCACACATG 58.358 40.909 0.00 0.00 0.00 3.21
2367 6558 1.346395 ACCGCACACATGTAAGGAAGA 59.654 47.619 0.00 0.00 0.00 2.87
2376 6632 6.692681 CACACATGTAAGGAAGAAAAACAGTG 59.307 38.462 0.00 0.00 0.00 3.66
2417 6673 5.220416 GCCGATGTACACAACAAGAGTTATC 60.220 44.000 0.00 0.00 42.70 1.75
2418 6674 6.100004 CCGATGTACACAACAAGAGTTATCT 58.900 40.000 0.00 0.00 42.70 1.98
2419 6675 7.255569 CCGATGTACACAACAAGAGTTATCTA 58.744 38.462 0.00 0.00 42.70 1.98
2420 6676 7.220300 CCGATGTACACAACAAGAGTTATCTAC 59.780 40.741 0.00 0.00 42.70 2.59
2421 6677 7.753580 CGATGTACACAACAAGAGTTATCTACA 59.246 37.037 0.00 0.00 42.70 2.74
2422 6678 9.587772 GATGTACACAACAAGAGTTATCTACAT 57.412 33.333 0.00 0.00 42.70 2.29
2423 6679 8.757164 TGTACACAACAAGAGTTATCTACATG 57.243 34.615 0.00 0.00 35.85 3.21
2467 6729 2.234661 CCAGCAACTCTCCTGTGACATA 59.765 50.000 0.00 0.00 0.00 2.29
2475 6737 6.602410 ACTCTCCTGTGACATATCATATGG 57.398 41.667 9.54 0.00 37.14 2.74
2564 6826 2.313317 AGTGTCACAGTAGGAACCGAA 58.687 47.619 5.62 0.00 0.00 4.30
2592 6854 2.223829 GGTGACTCGTAGATGATGTGGG 60.224 54.545 0.00 0.00 33.89 4.61
2603 6865 1.357137 TGATGTGGGTGTTAGGCTCA 58.643 50.000 0.00 0.00 0.00 4.26
2604 6866 1.278985 TGATGTGGGTGTTAGGCTCAG 59.721 52.381 0.00 0.00 0.00 3.35
2605 6867 1.279271 GATGTGGGTGTTAGGCTCAGT 59.721 52.381 0.00 0.00 0.00 3.41
2606 6868 0.685097 TGTGGGTGTTAGGCTCAGTC 59.315 55.000 0.00 0.00 0.00 3.51
2607 6869 0.389948 GTGGGTGTTAGGCTCAGTCG 60.390 60.000 0.00 0.00 0.00 4.18
2608 6870 1.218316 GGGTGTTAGGCTCAGTCGG 59.782 63.158 0.00 0.00 0.00 4.79
2609 6871 1.542187 GGGTGTTAGGCTCAGTCGGT 61.542 60.000 0.00 0.00 0.00 4.69
2610 6872 0.320697 GGTGTTAGGCTCAGTCGGTT 59.679 55.000 0.00 0.00 0.00 4.44
2611 6873 1.270678 GGTGTTAGGCTCAGTCGGTTT 60.271 52.381 0.00 0.00 0.00 3.27
2612 6874 2.028748 GGTGTTAGGCTCAGTCGGTTTA 60.029 50.000 0.00 0.00 0.00 2.01
2613 6875 3.369157 GGTGTTAGGCTCAGTCGGTTTAT 60.369 47.826 0.00 0.00 0.00 1.40
2614 6876 3.864003 GTGTTAGGCTCAGTCGGTTTATC 59.136 47.826 0.00 0.00 0.00 1.75
2615 6877 3.118884 TGTTAGGCTCAGTCGGTTTATCC 60.119 47.826 0.00 0.00 0.00 2.59
2616 6878 1.867363 AGGCTCAGTCGGTTTATCCT 58.133 50.000 0.00 0.00 0.00 3.24
2617 6879 1.482593 AGGCTCAGTCGGTTTATCCTG 59.517 52.381 0.00 0.00 0.00 3.86
2618 6880 1.480954 GGCTCAGTCGGTTTATCCTGA 59.519 52.381 0.00 0.00 33.22 3.86
2619 6881 2.093658 GGCTCAGTCGGTTTATCCTGAA 60.094 50.000 0.00 0.00 33.83 3.02
2620 6882 3.432326 GGCTCAGTCGGTTTATCCTGAAT 60.432 47.826 0.00 0.00 33.83 2.57
2621 6883 3.557595 GCTCAGTCGGTTTATCCTGAATG 59.442 47.826 0.00 0.00 36.74 2.67
2622 6884 4.759782 CTCAGTCGGTTTATCCTGAATGT 58.240 43.478 0.00 0.00 36.75 2.71
2623 6885 5.681437 GCTCAGTCGGTTTATCCTGAATGTA 60.681 44.000 0.00 0.00 36.75 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.360093 CCAAAATAAAACTATCGTGGCATTAAA 57.640 29.630 0.00 0.00 0.00 1.52
50 51 7.976734 CCCAAAATAAAACTATCGTGGCATTAA 59.023 33.333 0.00 0.00 0.00 1.40
51 52 7.339721 TCCCAAAATAAAACTATCGTGGCATTA 59.660 33.333 0.00 0.00 0.00 1.90
52 53 6.153680 TCCCAAAATAAAACTATCGTGGCATT 59.846 34.615 0.00 0.00 0.00 3.56
53 54 5.654650 TCCCAAAATAAAACTATCGTGGCAT 59.345 36.000 0.00 0.00 0.00 4.40
54 55 5.010933 TCCCAAAATAAAACTATCGTGGCA 58.989 37.500 0.00 0.00 0.00 4.92
55 56 5.570234 TCCCAAAATAAAACTATCGTGGC 57.430 39.130 0.00 0.00 0.00 5.01
56 57 5.124776 TGCTCCCAAAATAAAACTATCGTGG 59.875 40.000 0.00 0.00 0.00 4.94
57 58 6.189677 TGCTCCCAAAATAAAACTATCGTG 57.810 37.500 0.00 0.00 0.00 4.35
58 59 8.691661 ATATGCTCCCAAAATAAAACTATCGT 57.308 30.769 0.00 0.00 0.00 3.73
59 60 8.237267 GGATATGCTCCCAAAATAAAACTATCG 58.763 37.037 0.00 0.00 38.19 2.92
60 61 9.077885 TGGATATGCTCCCAAAATAAAACTATC 57.922 33.333 0.00 0.00 44.23 2.08
61 62 9.432982 TTGGATATGCTCCCAAAATAAAACTAT 57.567 29.630 0.00 0.00 44.23 2.12
62 63 8.830915 TTGGATATGCTCCCAAAATAAAACTA 57.169 30.769 0.00 0.00 44.23 2.24
63 64 7.732222 TTGGATATGCTCCCAAAATAAAACT 57.268 32.000 0.00 0.00 44.23 2.66
99 100 9.525826 CCTTAAAAATGCCATCCTCTAGATAAT 57.474 33.333 0.00 0.00 32.37 1.28
100 101 8.723365 TCCTTAAAAATGCCATCCTCTAGATAA 58.277 33.333 0.00 0.00 32.37 1.75
101 102 8.157476 GTCCTTAAAAATGCCATCCTCTAGATA 58.843 37.037 0.00 0.00 32.37 1.98
102 103 7.001073 GTCCTTAAAAATGCCATCCTCTAGAT 58.999 38.462 0.00 0.00 34.66 1.98
103 104 6.357367 GTCCTTAAAAATGCCATCCTCTAGA 58.643 40.000 0.00 0.00 0.00 2.43
104 105 5.532779 GGTCCTTAAAAATGCCATCCTCTAG 59.467 44.000 0.00 0.00 0.00 2.43
105 106 5.445964 GGTCCTTAAAAATGCCATCCTCTA 58.554 41.667 0.00 0.00 0.00 2.43
106 107 4.281657 GGTCCTTAAAAATGCCATCCTCT 58.718 43.478 0.00 0.00 0.00 3.69
107 108 3.066760 CGGTCCTTAAAAATGCCATCCTC 59.933 47.826 0.00 0.00 0.00 3.71
108 109 3.023832 CGGTCCTTAAAAATGCCATCCT 58.976 45.455 0.00 0.00 0.00 3.24
109 110 2.758423 ACGGTCCTTAAAAATGCCATCC 59.242 45.455 0.00 0.00 0.00 3.51
110 111 5.570234 TTACGGTCCTTAAAAATGCCATC 57.430 39.130 0.00 0.00 0.00 3.51
111 112 7.340999 ACTTATTACGGTCCTTAAAAATGCCAT 59.659 33.333 0.00 0.00 0.00 4.40
112 113 6.660094 ACTTATTACGGTCCTTAAAAATGCCA 59.340 34.615 0.00 0.00 0.00 4.92
113 114 6.970613 CACTTATTACGGTCCTTAAAAATGCC 59.029 38.462 0.00 0.00 0.00 4.40
114 115 6.471198 GCACTTATTACGGTCCTTAAAAATGC 59.529 38.462 0.00 0.00 0.00 3.56
115 116 6.970613 GGCACTTATTACGGTCCTTAAAAATG 59.029 38.462 0.00 0.00 0.00 2.32
116 117 6.660094 TGGCACTTATTACGGTCCTTAAAAAT 59.340 34.615 0.00 0.00 0.00 1.82
117 118 6.002704 TGGCACTTATTACGGTCCTTAAAAA 58.997 36.000 0.00 0.00 0.00 1.94
118 119 5.412286 GTGGCACTTATTACGGTCCTTAAAA 59.588 40.000 11.13 0.00 0.00 1.52
119 120 4.937015 GTGGCACTTATTACGGTCCTTAAA 59.063 41.667 11.13 0.00 0.00 1.52
120 121 4.020396 TGTGGCACTTATTACGGTCCTTAA 60.020 41.667 19.83 0.00 0.00 1.85
121 122 3.514706 TGTGGCACTTATTACGGTCCTTA 59.485 43.478 19.83 0.00 0.00 2.69
122 123 2.303600 TGTGGCACTTATTACGGTCCTT 59.696 45.455 19.83 0.00 0.00 3.36
123 124 1.903860 TGTGGCACTTATTACGGTCCT 59.096 47.619 19.83 0.00 0.00 3.85
124 125 2.004733 GTGTGGCACTTATTACGGTCC 58.995 52.381 19.83 0.00 0.00 4.46
125 126 1.657094 CGTGTGGCACTTATTACGGTC 59.343 52.381 19.83 0.00 31.34 4.79
126 127 1.001181 ACGTGTGGCACTTATTACGGT 59.999 47.619 24.82 12.21 36.01 4.83
127 128 1.392168 CACGTGTGGCACTTATTACGG 59.608 52.381 24.82 13.81 36.01 4.02
128 129 2.063266 ACACGTGTGGCACTTATTACG 58.937 47.619 22.71 21.21 37.54 3.18
129 130 3.449322 CACACGTGTGGCACTTATTAC 57.551 47.619 35.65 7.08 42.10 1.89
145 146 1.279840 GAACTGCTTCGTGCCACAC 59.720 57.895 0.00 0.00 42.00 3.82
146 147 1.891919 GGAACTGCTTCGTGCCACA 60.892 57.895 0.00 0.00 42.00 4.17
147 148 2.617274 GGGAACTGCTTCGTGCCAC 61.617 63.158 1.66 0.00 42.00 5.01
148 149 2.281484 GGGAACTGCTTCGTGCCA 60.281 61.111 1.66 0.00 42.00 4.92
149 150 3.056328 GGGGAACTGCTTCGTGCC 61.056 66.667 1.30 0.00 42.00 5.01
150 151 3.056328 GGGGGAACTGCTTCGTGC 61.056 66.667 0.00 0.00 43.25 5.34
151 152 1.672356 CAGGGGGAACTGCTTCGTG 60.672 63.158 0.00 0.00 0.00 4.35
152 153 1.841556 TCAGGGGGAACTGCTTCGT 60.842 57.895 0.00 0.00 38.36 3.85
153 154 1.376037 GTCAGGGGGAACTGCTTCG 60.376 63.158 0.00 0.00 38.36 3.79
154 155 1.376037 CGTCAGGGGGAACTGCTTC 60.376 63.158 0.00 0.00 38.36 3.86
155 156 1.705997 AACGTCAGGGGGAACTGCTT 61.706 55.000 0.00 0.00 38.36 3.91
156 157 1.705997 AAACGTCAGGGGGAACTGCT 61.706 55.000 0.00 0.00 38.36 4.24
157 158 0.822121 AAAACGTCAGGGGGAACTGC 60.822 55.000 0.00 0.00 38.36 4.40
158 159 1.687563 AAAAACGTCAGGGGGAACTG 58.312 50.000 0.00 0.00 39.84 3.16
180 181 9.334947 CCATCATCAGATAACTAAACTTGTCAT 57.665 33.333 0.00 0.00 31.88 3.06
181 182 7.280876 GCCATCATCAGATAACTAAACTTGTCA 59.719 37.037 0.00 0.00 31.88 3.58
182 183 7.280876 TGCCATCATCAGATAACTAAACTTGTC 59.719 37.037 0.00 0.00 31.88 3.18
183 184 7.112122 TGCCATCATCAGATAACTAAACTTGT 58.888 34.615 0.00 0.00 31.88 3.16
184 185 7.558161 TGCCATCATCAGATAACTAAACTTG 57.442 36.000 0.00 0.00 31.88 3.16
185 186 7.831193 AGTTGCCATCATCAGATAACTAAACTT 59.169 33.333 0.00 0.00 31.85 2.66
186 187 7.341805 AGTTGCCATCATCAGATAACTAAACT 58.658 34.615 0.00 0.00 31.85 2.66
187 188 7.559590 AGTTGCCATCATCAGATAACTAAAC 57.440 36.000 0.00 0.00 31.85 2.01
188 189 8.579850 AAAGTTGCCATCATCAGATAACTAAA 57.420 30.769 0.00 0.00 32.22 1.85
189 190 9.330063 CTAAAGTTGCCATCATCAGATAACTAA 57.670 33.333 0.00 0.00 32.22 2.24
190 191 8.486210 ACTAAAGTTGCCATCATCAGATAACTA 58.514 33.333 0.00 0.00 32.22 2.24
191 192 7.341805 ACTAAAGTTGCCATCATCAGATAACT 58.658 34.615 0.00 0.00 33.91 2.24
192 193 7.559590 ACTAAAGTTGCCATCATCAGATAAC 57.440 36.000 0.00 0.00 31.88 1.89
217 218 6.449635 AATAGAAAGTTGTTGTGCTTCACA 57.550 33.333 0.00 0.00 43.02 3.58
218 219 6.972328 TCAAATAGAAAGTTGTTGTGCTTCAC 59.028 34.615 0.00 0.00 32.58 3.18
219 220 7.094508 TCAAATAGAAAGTTGTTGTGCTTCA 57.905 32.000 0.00 0.00 32.58 3.02
220 221 7.115378 CCATCAAATAGAAAGTTGTTGTGCTTC 59.885 37.037 0.00 0.00 31.58 3.86
221 222 6.925165 CCATCAAATAGAAAGTTGTTGTGCTT 59.075 34.615 0.00 0.00 31.58 3.91
222 223 6.449698 CCATCAAATAGAAAGTTGTTGTGCT 58.550 36.000 0.00 0.00 31.58 4.40
223 224 5.119125 GCCATCAAATAGAAAGTTGTTGTGC 59.881 40.000 0.00 0.00 31.58 4.57
224 225 6.215121 TGCCATCAAATAGAAAGTTGTTGTG 58.785 36.000 0.00 0.00 31.58 3.33
225 226 6.403866 TGCCATCAAATAGAAAGTTGTTGT 57.596 33.333 0.00 0.00 31.58 3.32
226 227 6.925165 ACTTGCCATCAAATAGAAAGTTGTTG 59.075 34.615 0.00 0.00 32.58 3.33
227 228 7.054491 ACTTGCCATCAAATAGAAAGTTGTT 57.946 32.000 0.00 0.00 32.58 2.83
228 229 6.655078 ACTTGCCATCAAATAGAAAGTTGT 57.345 33.333 0.00 0.00 32.58 3.32
229 230 7.652909 TGAAACTTGCCATCAAATAGAAAGTTG 59.347 33.333 0.00 0.00 36.71 3.16
230 231 7.725251 TGAAACTTGCCATCAAATAGAAAGTT 58.275 30.769 0.00 0.00 37.84 2.66
231 232 7.014615 ACTGAAACTTGCCATCAAATAGAAAGT 59.985 33.333 0.00 0.00 0.00 2.66
232 233 7.373493 ACTGAAACTTGCCATCAAATAGAAAG 58.627 34.615 0.00 0.00 0.00 2.62
233 234 7.288810 ACTGAAACTTGCCATCAAATAGAAA 57.711 32.000 0.00 0.00 0.00 2.52
234 235 6.899393 ACTGAAACTTGCCATCAAATAGAA 57.101 33.333 0.00 0.00 0.00 2.10
235 236 6.899393 AACTGAAACTTGCCATCAAATAGA 57.101 33.333 0.00 0.00 0.00 1.98
236 237 7.951530 AAAACTGAAACTTGCCATCAAATAG 57.048 32.000 0.00 0.00 0.00 1.73
272 273 8.954950 TCTGCAACTAAAATTTCCATCAAAAA 57.045 26.923 0.00 0.00 0.00 1.94
273 274 8.954950 TTCTGCAACTAAAATTTCCATCAAAA 57.045 26.923 0.00 0.00 0.00 2.44
274 275 8.954950 TTTCTGCAACTAAAATTTCCATCAAA 57.045 26.923 0.00 0.00 0.00 2.69
275 276 8.991026 CATTTCTGCAACTAAAATTTCCATCAA 58.009 29.630 0.00 0.00 0.00 2.57
276 277 8.149647 ACATTTCTGCAACTAAAATTTCCATCA 58.850 29.630 0.00 0.00 0.00 3.07
277 278 8.538409 ACATTTCTGCAACTAAAATTTCCATC 57.462 30.769 0.00 0.00 0.00 3.51
278 279 8.149647 TGACATTTCTGCAACTAAAATTTCCAT 58.850 29.630 0.00 0.00 0.00 3.41
279 280 7.495901 TGACATTTCTGCAACTAAAATTTCCA 58.504 30.769 0.00 0.00 0.00 3.53
280 281 7.116805 CCTGACATTTCTGCAACTAAAATTTCC 59.883 37.037 0.00 0.00 0.00 3.13
281 282 7.867403 TCCTGACATTTCTGCAACTAAAATTTC 59.133 33.333 0.00 0.00 0.00 2.17
282 283 7.653311 GTCCTGACATTTCTGCAACTAAAATTT 59.347 33.333 0.00 0.00 0.00 1.82
283 284 7.147976 GTCCTGACATTTCTGCAACTAAAATT 58.852 34.615 0.00 0.00 0.00 1.82
284 285 6.568462 CGTCCTGACATTTCTGCAACTAAAAT 60.568 38.462 0.00 0.00 0.00 1.82
285 286 5.277779 CGTCCTGACATTTCTGCAACTAAAA 60.278 40.000 0.00 0.00 0.00 1.52
286 287 4.213270 CGTCCTGACATTTCTGCAACTAAA 59.787 41.667 0.00 0.00 0.00 1.85
287 288 3.745975 CGTCCTGACATTTCTGCAACTAA 59.254 43.478 0.00 0.00 0.00 2.24
288 289 3.325870 CGTCCTGACATTTCTGCAACTA 58.674 45.455 0.00 0.00 0.00 2.24
289 290 2.146342 CGTCCTGACATTTCTGCAACT 58.854 47.619 0.00 0.00 0.00 3.16
290 291 1.197721 CCGTCCTGACATTTCTGCAAC 59.802 52.381 0.00 0.00 0.00 4.17
291 292 1.202758 ACCGTCCTGACATTTCTGCAA 60.203 47.619 0.00 0.00 0.00 4.08
292 293 0.396435 ACCGTCCTGACATTTCTGCA 59.604 50.000 0.00 0.00 0.00 4.41
293 294 0.798776 CACCGTCCTGACATTTCTGC 59.201 55.000 0.00 0.00 0.00 4.26
294 295 2.169832 ACACCGTCCTGACATTTCTG 57.830 50.000 0.00 0.00 0.00 3.02
295 296 2.930826 AACACCGTCCTGACATTTCT 57.069 45.000 0.00 0.00 0.00 2.52
296 297 3.660865 AGTAACACCGTCCTGACATTTC 58.339 45.455 0.00 0.00 0.00 2.17
297 298 3.764237 AGTAACACCGTCCTGACATTT 57.236 42.857 0.00 0.00 0.00 2.32
298 299 3.660865 GAAGTAACACCGTCCTGACATT 58.339 45.455 0.00 0.00 0.00 2.71
299 300 2.352421 CGAAGTAACACCGTCCTGACAT 60.352 50.000 0.00 0.00 0.00 3.06
300 301 1.001048 CGAAGTAACACCGTCCTGACA 60.001 52.381 0.00 0.00 0.00 3.58
301 302 1.000938 ACGAAGTAACACCGTCCTGAC 60.001 52.381 0.00 0.00 41.94 3.51
302 303 1.001048 CACGAAGTAACACCGTCCTGA 60.001 52.381 0.00 0.00 41.61 3.86
303 304 1.415374 CACGAAGTAACACCGTCCTG 58.585 55.000 0.00 0.00 41.61 3.86
304 305 0.319297 GCACGAAGTAACACCGTCCT 60.319 55.000 0.00 0.00 41.61 3.85
305 306 1.287041 GGCACGAAGTAACACCGTCC 61.287 60.000 0.00 0.00 41.61 4.79
306 307 0.598158 TGGCACGAAGTAACACCGTC 60.598 55.000 0.00 0.00 41.61 4.79
307 308 0.877213 GTGGCACGAAGTAACACCGT 60.877 55.000 0.00 0.00 41.61 4.83
308 309 0.876777 TGTGGCACGAAGTAACACCG 60.877 55.000 13.77 0.00 41.61 4.94
309 310 0.584876 GTGTGGCACGAAGTAACACC 59.415 55.000 13.77 0.00 41.61 4.16
323 324 4.944962 ATGATAAATGTCACACGTGTGG 57.055 40.909 39.88 25.18 45.65 4.17
324 325 5.568677 CCAAATGATAAATGTCACACGTGTG 59.431 40.000 37.04 37.04 46.91 3.82
325 326 5.335583 CCCAAATGATAAATGTCACACGTGT 60.336 40.000 17.22 17.22 0.00 4.49
326 327 5.094812 CCCAAATGATAAATGTCACACGTG 58.905 41.667 15.48 15.48 0.00 4.49
327 328 4.764823 ACCCAAATGATAAATGTCACACGT 59.235 37.500 0.00 0.00 0.00 4.49
328 329 5.309323 ACCCAAATGATAAATGTCACACG 57.691 39.130 0.00 0.00 0.00 4.49
329 330 9.651913 AATTTACCCAAATGATAAATGTCACAC 57.348 29.630 0.00 0.00 34.53 3.82
345 346 9.717942 CTGTCATTCCATTAAAAATTTACCCAA 57.282 29.630 0.00 0.00 0.00 4.12
346 347 8.875168 ACTGTCATTCCATTAAAAATTTACCCA 58.125 29.630 0.00 0.00 0.00 4.51
347 348 9.719355 AACTGTCATTCCATTAAAAATTTACCC 57.281 29.630 0.00 0.00 0.00 3.69
358 359 9.717942 CCCAAAAATAAAACTGTCATTCCATTA 57.282 29.630 0.00 0.00 0.00 1.90
359 360 7.665145 CCCCAAAAATAAAACTGTCATTCCATT 59.335 33.333 0.00 0.00 0.00 3.16
360 361 7.167535 CCCCAAAAATAAAACTGTCATTCCAT 58.832 34.615 0.00 0.00 0.00 3.41
361 362 6.529220 CCCCAAAAATAAAACTGTCATTCCA 58.471 36.000 0.00 0.00 0.00 3.53
362 363 5.411361 GCCCCAAAAATAAAACTGTCATTCC 59.589 40.000 0.00 0.00 0.00 3.01
363 364 5.994668 TGCCCCAAAAATAAAACTGTCATTC 59.005 36.000 0.00 0.00 0.00 2.67
364 365 5.934781 TGCCCCAAAAATAAAACTGTCATT 58.065 33.333 0.00 0.00 0.00 2.57
365 366 5.559148 TGCCCCAAAAATAAAACTGTCAT 57.441 34.783 0.00 0.00 0.00 3.06
366 367 5.559148 ATGCCCCAAAAATAAAACTGTCA 57.441 34.783 0.00 0.00 0.00 3.58
367 368 6.761242 GGATATGCCCCAAAAATAAAACTGTC 59.239 38.462 0.00 0.00 0.00 3.51
368 369 6.214412 TGGATATGCCCCAAAAATAAAACTGT 59.786 34.615 0.00 0.00 34.97 3.55
369 370 6.648192 TGGATATGCCCCAAAAATAAAACTG 58.352 36.000 0.00 0.00 34.97 3.16
370 371 6.882768 TGGATATGCCCCAAAAATAAAACT 57.117 33.333 0.00 0.00 34.97 2.66
371 372 7.929941 TTTGGATATGCCCCAAAAATAAAAC 57.070 32.000 4.99 0.00 46.99 2.43
403 404 9.288576 CATTAAAACATGCCATCCTCTAGATAA 57.711 33.333 0.00 0.00 32.37 1.75
404 405 8.439971 ACATTAAAACATGCCATCCTCTAGATA 58.560 33.333 0.00 0.00 32.37 1.98
405 406 7.293073 ACATTAAAACATGCCATCCTCTAGAT 58.707 34.615 0.00 0.00 34.66 1.98
406 407 6.662755 ACATTAAAACATGCCATCCTCTAGA 58.337 36.000 0.00 0.00 0.00 2.43
407 408 6.949352 ACATTAAAACATGCCATCCTCTAG 57.051 37.500 0.00 0.00 0.00 2.43
408 409 7.395772 TCAAACATTAAAACATGCCATCCTCTA 59.604 33.333 0.00 0.00 0.00 2.43
409 410 6.211184 TCAAACATTAAAACATGCCATCCTCT 59.789 34.615 0.00 0.00 0.00 3.69
410 411 6.397272 TCAAACATTAAAACATGCCATCCTC 58.603 36.000 0.00 0.00 0.00 3.71
411 412 6.211184 TCTCAAACATTAAAACATGCCATCCT 59.789 34.615 0.00 0.00 0.00 3.24
412 413 6.397272 TCTCAAACATTAAAACATGCCATCC 58.603 36.000 0.00 0.00 0.00 3.51
413 414 6.532657 CCTCTCAAACATTAAAACATGCCATC 59.467 38.462 0.00 0.00 0.00 3.51
414 415 6.211184 TCCTCTCAAACATTAAAACATGCCAT 59.789 34.615 0.00 0.00 0.00 4.40
415 416 5.538053 TCCTCTCAAACATTAAAACATGCCA 59.462 36.000 0.00 0.00 0.00 4.92
416 417 6.024552 TCCTCTCAAACATTAAAACATGCC 57.975 37.500 0.00 0.00 0.00 4.40
417 418 6.532657 CCATCCTCTCAAACATTAAAACATGC 59.467 38.462 0.00 0.00 0.00 4.06
418 419 6.532657 GCCATCCTCTCAAACATTAAAACATG 59.467 38.462 0.00 0.00 0.00 3.21
419 420 6.211184 TGCCATCCTCTCAAACATTAAAACAT 59.789 34.615 0.00 0.00 0.00 2.71
420 421 5.538053 TGCCATCCTCTCAAACATTAAAACA 59.462 36.000 0.00 0.00 0.00 2.83
421 422 6.024552 TGCCATCCTCTCAAACATTAAAAC 57.975 37.500 0.00 0.00 0.00 2.43
422 423 6.855763 ATGCCATCCTCTCAAACATTAAAA 57.144 33.333 0.00 0.00 0.00 1.52
423 424 6.855763 AATGCCATCCTCTCAAACATTAAA 57.144 33.333 0.00 0.00 0.00 1.52
424 425 6.855763 AAATGCCATCCTCTCAAACATTAA 57.144 33.333 0.00 0.00 0.00 1.40
425 426 6.855763 AAAATGCCATCCTCTCAAACATTA 57.144 33.333 0.00 0.00 0.00 1.90
426 427 5.750352 AAAATGCCATCCTCTCAAACATT 57.250 34.783 0.00 0.00 0.00 2.71
427 428 5.750352 AAAAATGCCATCCTCTCAAACAT 57.250 34.783 0.00 0.00 0.00 2.71
428 429 6.662865 TTAAAAATGCCATCCTCTCAAACA 57.337 33.333 0.00 0.00 0.00 2.83
429 430 7.961325 TTTTAAAAATGCCATCCTCTCAAAC 57.039 32.000 0.00 0.00 0.00 2.93
430 431 9.571816 AAATTTTAAAAATGCCATCCTCTCAAA 57.428 25.926 4.44 0.00 0.00 2.69
431 432 9.571816 AAAATTTTAAAAATGCCATCCTCTCAA 57.428 25.926 4.44 0.00 0.00 3.02
456 457 7.555554 CCCCAAATAAAAATGTCATGCCATTAA 59.444 33.333 1.80 0.00 34.01 1.40
468 469 5.269505 TGGATACGCCCCAAATAAAAATG 57.730 39.130 0.00 0.00 42.51 2.32
470 471 5.740290 TTTGGATACGCCCCAAATAAAAA 57.260 34.783 11.07 0.00 45.64 1.94
654 661 6.315891 CGGGATAAAAATGCCATGAACAAAAT 59.684 34.615 0.00 0.00 31.74 1.82
711 718 1.428912 TCCAGAGGCCCATTCAACTTT 59.571 47.619 0.00 0.00 0.00 2.66
714 721 0.681243 GGTCCAGAGGCCCATTCAAC 60.681 60.000 0.00 0.00 0.00 3.18
715 722 1.139498 TGGTCCAGAGGCCCATTCAA 61.139 55.000 0.00 0.00 0.00 2.69
716 723 1.139498 TTGGTCCAGAGGCCCATTCA 61.139 55.000 0.00 0.00 0.00 2.57
721 731 2.035783 GGTTTGGTCCAGAGGCCC 59.964 66.667 0.00 0.00 0.00 5.80
814 829 2.169330 GGGTCGGATCCTAGTGTATCC 58.831 57.143 10.75 6.11 38.66 2.59
867 907 3.181506 GCGTCCAATTCCACTTCAAGATC 60.182 47.826 0.00 0.00 0.00 2.75
868 908 2.749621 GCGTCCAATTCCACTTCAAGAT 59.250 45.455 0.00 0.00 0.00 2.40
869 909 2.151202 GCGTCCAATTCCACTTCAAGA 58.849 47.619 0.00 0.00 0.00 3.02
870 910 1.879380 TGCGTCCAATTCCACTTCAAG 59.121 47.619 0.00 0.00 0.00 3.02
871 911 1.606668 GTGCGTCCAATTCCACTTCAA 59.393 47.619 0.00 0.00 0.00 2.69
958 1032 0.784778 CAGTCGTCGAGCCTTGTTTC 59.215 55.000 0.00 0.00 0.00 2.78
1128 1208 2.896854 GCAGCATCGATTCCGCCA 60.897 61.111 0.00 0.00 35.37 5.69
1165 1245 4.070552 GGGAAGTGCGGCGAGAGT 62.071 66.667 12.98 0.00 0.00 3.24
1214 1294 4.753877 CGAACTCGCGCTCCGTCA 62.754 66.667 5.56 0.00 38.35 4.35
1257 1337 4.988598 CGTGCCCACCGCTCAAGT 62.989 66.667 0.00 0.00 38.78 3.16
1300 1389 1.557269 CCTGACTTGGACCTGAGGGG 61.557 65.000 2.38 0.00 41.89 4.79
1301 1390 1.986413 CCTGACTTGGACCTGAGGG 59.014 63.158 2.38 0.00 38.88 4.30
1333 1422 3.254060 CGTTGTTGATCTCGAACTCCAT 58.746 45.455 0.00 0.00 0.00 3.41
1524 1616 4.443658 TCCTAATATACCCATCATGCCCA 58.556 43.478 0.00 0.00 0.00 5.36
1547 1639 6.152661 CCTCTTCAAATACTTGGGCATAAACA 59.847 38.462 0.00 0.00 33.01 2.83
1559 1651 3.454082 CTCCCTGAGCCTCTTCAAATACT 59.546 47.826 0.00 0.00 0.00 2.12
1666 1954 0.807667 CATTCAACGGCTCCCTCGAG 60.808 60.000 5.13 5.13 39.33 4.04
1667 1955 1.218047 CATTCAACGGCTCCCTCGA 59.782 57.895 0.00 0.00 0.00 4.04
1668 1956 0.179073 ATCATTCAACGGCTCCCTCG 60.179 55.000 0.00 0.00 0.00 4.63
1669 1957 2.044123 AATCATTCAACGGCTCCCTC 57.956 50.000 0.00 0.00 0.00 4.30
1675 1963 1.672881 AGCAGCTAATCATTCAACGGC 59.327 47.619 0.00 0.00 0.00 5.68
1677 1965 3.796717 TCGTAGCAGCTAATCATTCAACG 59.203 43.478 2.87 2.80 0.00 4.10
1707 1995 5.461078 ACACGGCGACAATATATTACTTGTC 59.539 40.000 16.62 12.19 44.92 3.18
1718 2270 3.029320 ACAGTAAACACGGCGACAATA 57.971 42.857 16.62 0.00 0.00 1.90
1752 2304 2.289694 ACATTGAGACCGTGAAGGGAAG 60.290 50.000 0.00 0.00 46.96 3.46
1754 2306 1.348064 ACATTGAGACCGTGAAGGGA 58.652 50.000 0.00 0.00 46.96 4.20
1755 2307 2.618053 GTACATTGAGACCGTGAAGGG 58.382 52.381 0.00 0.00 46.96 3.95
1761 2313 4.954202 TCAATAGAGGTACATTGAGACCGT 59.046 41.667 2.99 2.88 40.91 4.83
1764 2316 6.975772 GTCTGTCAATAGAGGTACATTGAGAC 59.024 42.308 6.59 7.87 40.77 3.36
1775 2327 2.428890 AGCTTCGGTCTGTCAATAGAGG 59.571 50.000 0.00 0.00 0.00 3.69
1798 2354 3.071479 GCATCAAACCGAGTTACTCCAA 58.929 45.455 6.80 0.00 0.00 3.53
1799 2355 2.614481 GGCATCAAACCGAGTTACTCCA 60.614 50.000 6.80 0.00 0.00 3.86
1805 2394 1.909700 ACATGGCATCAAACCGAGTT 58.090 45.000 0.00 0.00 0.00 3.01
1811 2445 5.466058 TGTTGATCAAAACATGGCATCAAAC 59.534 36.000 10.35 0.00 35.33 2.93
1834 2484 3.029320 TGCTAAGTTTGCTTGCCAATG 57.971 42.857 10.60 0.00 36.22 2.82
1896 4195 6.420604 ACCAAAACGAATGCTATTGTTTTCTG 59.579 34.615 13.95 11.61 42.33 3.02
1937 4674 2.030371 TGAACAAGTGATGGCAAAGCA 58.970 42.857 0.00 0.00 0.00 3.91
1961 4698 2.447429 TCTTGTTATGGTGGGGGTGAAA 59.553 45.455 0.00 0.00 0.00 2.69
1978 4867 7.440523 AGTAGGTAGAACTGCATTTTTCTTG 57.559 36.000 9.83 0.00 33.96 3.02
1989 4881 3.056536 TGAGCAGCAAGTAGGTAGAACTG 60.057 47.826 0.00 0.00 0.00 3.16
1994 4886 3.118629 TGGAATGAGCAGCAAGTAGGTAG 60.119 47.826 0.00 0.00 0.00 3.18
2020 4912 2.287129 GCCAAAATGCTGCCAAAACTTG 60.287 45.455 0.00 0.00 0.00 3.16
2058 4950 9.669353 CTAGTTTGTATTGCCATTTAATAGCTG 57.331 33.333 0.00 0.00 0.00 4.24
2068 4960 9.407380 TGTGATATTTCTAGTTTGTATTGCCAT 57.593 29.630 0.00 0.00 0.00 4.40
2069 4961 8.800370 TGTGATATTTCTAGTTTGTATTGCCA 57.200 30.769 0.00 0.00 0.00 4.92
2070 4962 7.857885 GCTGTGATATTTCTAGTTTGTATTGCC 59.142 37.037 0.00 0.00 0.00 4.52
2072 4970 9.926751 CTGCTGTGATATTTCTAGTTTGTATTG 57.073 33.333 0.00 0.00 0.00 1.90
2073 4971 8.616076 GCTGCTGTGATATTTCTAGTTTGTATT 58.384 33.333 0.00 0.00 0.00 1.89
2081 4983 6.145858 GTCTGATGCTGCTGTGATATTTCTAG 59.854 42.308 0.00 0.00 0.00 2.43
2082 4984 5.987953 GTCTGATGCTGCTGTGATATTTCTA 59.012 40.000 0.00 0.00 0.00 2.10
2087 4989 2.547430 CGGTCTGATGCTGCTGTGATAT 60.547 50.000 0.00 0.00 0.00 1.63
2095 4997 0.815213 TTATGGCGGTCTGATGCTGC 60.815 55.000 0.00 0.00 37.50 5.25
2146 6314 2.392662 TCCATGGTTTGTTTGAGCCAA 58.607 42.857 12.58 0.00 34.39 4.52
2147 6315 2.079170 TCCATGGTTTGTTTGAGCCA 57.921 45.000 12.58 0.00 35.28 4.75
2148 6316 2.415893 CGATCCATGGTTTGTTTGAGCC 60.416 50.000 12.58 0.00 0.00 4.70
2149 6317 2.228822 ACGATCCATGGTTTGTTTGAGC 59.771 45.455 12.58 0.00 0.00 4.26
2150 6318 3.366273 CCACGATCCATGGTTTGTTTGAG 60.366 47.826 12.58 1.78 32.08 3.02
2151 6319 2.556189 CCACGATCCATGGTTTGTTTGA 59.444 45.455 12.58 0.00 32.08 2.69
2152 6320 2.556189 TCCACGATCCATGGTTTGTTTG 59.444 45.455 12.58 7.30 38.47 2.93
2153 6321 2.870175 TCCACGATCCATGGTTTGTTT 58.130 42.857 12.58 0.00 38.47 2.83
2154 6322 2.577606 TCCACGATCCATGGTTTGTT 57.422 45.000 12.58 0.00 38.47 2.83
2182 6350 4.708177 ACACATTGTGCTAGTCAACTCTT 58.292 39.130 16.62 0.00 36.98 2.85
2214 6382 6.945435 TCTTATATTCCCAAAAAGCACTGACA 59.055 34.615 0.00 0.00 0.00 3.58
2215 6383 7.336931 TCTCTTATATTCCCAAAAAGCACTGAC 59.663 37.037 0.00 0.00 0.00 3.51
2216 6384 7.402054 TCTCTTATATTCCCAAAAAGCACTGA 58.598 34.615 0.00 0.00 0.00 3.41
2217 6385 7.630242 TCTCTTATATTCCCAAAAAGCACTG 57.370 36.000 0.00 0.00 0.00 3.66
2236 6408 3.571401 CCAAAATGGCACTCAGTTCTCTT 59.429 43.478 0.00 0.00 31.92 2.85
2250 6422 7.651027 AGAATATGACCTCTTTCCAAAATGG 57.349 36.000 0.00 0.00 39.43 3.16
2283 6455 7.278868 CCACTGTTTCTTCGCTATTCTCTAAAT 59.721 37.037 0.00 0.00 0.00 1.40
2300 6472 2.802247 GTTACCGGTGTACCACTGTTTC 59.198 50.000 19.93 0.00 38.92 2.78
2310 6494 4.082679 GGAAATTGCATTGTTACCGGTGTA 60.083 41.667 19.93 1.41 0.00 2.90
2312 6496 3.056891 AGGAAATTGCATTGTTACCGGTG 60.057 43.478 19.93 0.00 0.00 4.94
2313 6497 3.161866 AGGAAATTGCATTGTTACCGGT 58.838 40.909 13.98 13.98 0.00 5.28
2314 6498 3.866883 AGGAAATTGCATTGTTACCGG 57.133 42.857 0.00 0.00 0.00 5.28
2335 6526 5.048083 ACATGTGTGCGGTGAAAAATTCTAT 60.048 36.000 0.00 0.00 0.00 1.98
2339 6530 3.451141 ACATGTGTGCGGTGAAAAATT 57.549 38.095 0.00 0.00 0.00 1.82
2340 6531 4.545610 CTTACATGTGTGCGGTGAAAAAT 58.454 39.130 9.11 0.00 0.00 1.82
2350 6541 5.587289 TGTTTTTCTTCCTTACATGTGTGC 58.413 37.500 9.11 0.00 0.00 4.57
2355 6546 9.003658 ACTATCACTGTTTTTCTTCCTTACATG 57.996 33.333 0.00 0.00 0.00 3.21
2358 6549 7.041372 TGCACTATCACTGTTTTTCTTCCTTAC 60.041 37.037 0.00 0.00 0.00 2.34
2395 6651 7.753580 TGTAGATAACTCTTGTTGTGTACATCG 59.246 37.037 0.00 0.00 43.52 3.84
2417 6673 8.057156 GCGTGACGATATACTCTATACATGTAG 58.943 40.741 10.10 1.58 0.00 2.74
2418 6674 7.903062 GCGTGACGATATACTCTATACATGTA 58.097 38.462 10.10 8.27 0.00 2.29
2419 6675 6.773080 GCGTGACGATATACTCTATACATGT 58.227 40.000 10.10 2.69 0.00 3.21
2516 6778 8.392631 TGTATAGACCAGGGCATTATGATATT 57.607 34.615 0.00 0.00 0.00 1.28
2564 6826 4.527944 TCATCTACGAGTCACCAGATTCT 58.472 43.478 0.00 0.00 0.00 2.40
2592 6854 2.165319 AAACCGACTGAGCCTAACAC 57.835 50.000 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.