Multiple sequence alignment - TraesCS7B01G157200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G157200 chr7B 100.000 4521 0 0 1 4521 212470572 212475092 0.000000e+00 8349
1 TraesCS7B01G157200 chr7D 95.469 1589 47 8 2175 3756 236174558 236176128 0.000000e+00 2512
2 TraesCS7B01G157200 chr7D 92.649 1442 52 11 356 1769 236173144 236174559 0.000000e+00 2026
3 TraesCS7B01G157200 chr7D 88.492 504 48 4 4018 4521 236180317 236180810 6.470000e-168 601
4 TraesCS7B01G157200 chr7D 89.851 404 34 7 1770 2169 629588304 629588704 3.120000e-141 512
5 TraesCS7B01G157200 chr7D 88.452 407 31 10 1773 2168 486108125 486108526 1.140000e-130 477
6 TraesCS7B01G157200 chr7D 86.715 414 38 12 1770 2169 629584537 629584947 1.150000e-120 444
7 TraesCS7B01G157200 chr7D 87.500 224 25 3 1 222 569206867 569207089 5.800000e-64 255
8 TraesCS7B01G157200 chr7D 77.713 341 71 3 3931 4270 457198549 457198885 2.130000e-48 204
9 TraesCS7B01G157200 chr7D 86.387 191 19 3 3748 3932 236176307 236176496 7.670000e-48 202
10 TraesCS7B01G157200 chr7D 85.321 109 10 5 258 362 274261803 274261697 1.720000e-19 108
11 TraesCS7B01G157200 chr7A 93.533 1670 62 20 2175 3817 251279466 251281116 0.000000e+00 2444
12 TraesCS7B01G157200 chr7A 88.150 1443 83 24 356 1769 251278084 251279467 0.000000e+00 1637
13 TraesCS7B01G157200 chr7A 84.823 593 68 11 3933 4521 251281403 251281977 1.090000e-160 577
14 TraesCS7B01G157200 chr2B 88.722 399 31 13 1781 2172 58101247 58101638 4.090000e-130 475
15 TraesCS7B01G157200 chr2B 80.000 190 38 0 3931 4120 727212232 727212043 1.700000e-29 141
16 TraesCS7B01G157200 chr2D 87.563 394 40 7 1773 2162 587204989 587204601 8.920000e-122 448
17 TraesCS7B01G157200 chr2D 86.341 410 39 10 1773 2168 46372109 46371703 8.980000e-117 431
18 TraesCS7B01G157200 chr2D 86.996 223 28 1 1 222 89256760 89256982 2.700000e-62 250
19 TraesCS7B01G157200 chr4A 86.715 414 34 14 1770 2168 721832691 721833098 1.490000e-119 440
20 TraesCS7B01G157200 chr4A 86.996 223 26 3 1 222 728801926 728801706 9.710000e-62 248
21 TraesCS7B01G157200 chr6D 89.306 346 26 9 1826 2167 438884229 438883891 1.500000e-114 424
22 TraesCS7B01G157200 chr6D 89.238 223 22 2 1 222 137121802 137121581 1.240000e-70 278
23 TraesCS7B01G157200 chr3A 86.104 403 42 13 1773 2168 78143772 78144167 5.410000e-114 422
24 TraesCS7B01G157200 chr3A 84.831 356 50 2 1 355 649943581 649943933 5.560000e-94 355
25 TraesCS7B01G157200 chr5B 85.504 407 37 15 1773 2169 331269644 331270038 5.450000e-109 405
26 TraesCS7B01G157200 chr3B 85.196 358 49 4 1 355 680229080 680229436 9.240000e-97 364
27 TraesCS7B01G157200 chr1B 81.765 340 55 6 1 336 484454674 484455010 1.240000e-70 278
28 TraesCS7B01G157200 chrUn 84.982 273 33 7 84 352 225200747 225201015 2.070000e-68 270
29 TraesCS7B01G157200 chr5D 86.547 223 28 2 1 222 430970973 430971194 1.260000e-60 244
30 TraesCS7B01G157200 chr3D 81.890 127 19 3 3931 4057 344334474 344334352 2.220000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G157200 chr7B 212470572 212475092 4520 False 8349.000000 8349 100.000000 1 4521 1 chr7B.!!$F1 4520
1 TraesCS7B01G157200 chr7D 236173144 236180810 7666 False 1335.250000 2512 90.749250 356 4521 4 chr7D.!!$F4 4165
2 TraesCS7B01G157200 chr7D 629584537 629588704 4167 False 478.000000 512 88.283000 1770 2169 2 chr7D.!!$F5 399
3 TraesCS7B01G157200 chr7A 251278084 251281977 3893 False 1552.666667 2444 88.835333 356 4521 3 chr7A.!!$F1 4165

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.031585 TGTGGACGAACTCTCCAACG 59.968 55.0 0.00 0.00 39.60 4.10 F
948 964 0.251916 GTGCCACCAGGTGCACTATA 59.748 55.0 27.09 5.96 37.48 1.31 F
1815 5620 1.021390 CATCTGCACCCGGTCAGAAC 61.021 60.0 18.21 0.00 41.96 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 5934 0.103937 CGAGCTCATCTTCACCCCTC 59.896 60.0 15.40 0.0 0.00 4.30 R
2162 5970 0.252881 AGCTGGGAGGGAATGAGTGA 60.253 55.0 0.00 0.0 0.00 3.41 R
3555 7374 0.314578 CGACGTGCAATTCGATGAGC 60.315 55.0 11.85 0.0 37.43 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.310406 TCTAGCAACGAATCATAATTACCATG 57.690 34.615 0.00 0.00 0.00 3.66
26 27 6.317789 AGCAACGAATCATAATTACCATGG 57.682 37.500 11.19 11.19 0.00 3.66
27 28 5.241506 AGCAACGAATCATAATTACCATGGG 59.758 40.000 18.09 0.00 0.00 4.00
28 29 5.009610 GCAACGAATCATAATTACCATGGGT 59.990 40.000 18.09 4.30 40.16 4.51
29 30 6.437928 CAACGAATCATAATTACCATGGGTG 58.562 40.000 18.09 5.06 36.19 4.61
30 31 5.690865 ACGAATCATAATTACCATGGGTGT 58.309 37.500 18.09 0.00 36.19 4.16
31 32 6.126409 ACGAATCATAATTACCATGGGTGTT 58.874 36.000 18.09 9.66 36.19 3.32
32 33 6.605594 ACGAATCATAATTACCATGGGTGTTT 59.394 34.615 18.09 6.70 36.19 2.83
33 34 7.776030 ACGAATCATAATTACCATGGGTGTTTA 59.224 33.333 18.09 8.72 36.19 2.01
34 35 8.073768 CGAATCATAATTACCATGGGTGTTTAC 58.926 37.037 18.09 0.00 36.19 2.01
35 36 7.833285 ATCATAATTACCATGGGTGTTTACC 57.167 36.000 18.09 0.00 46.76 2.85
36 37 6.975949 TCATAATTACCATGGGTGTTTACCT 58.024 36.000 18.09 0.00 46.66 3.08
37 38 8.103660 TCATAATTACCATGGGTGTTTACCTA 57.896 34.615 18.09 0.00 46.66 3.08
38 39 8.215050 TCATAATTACCATGGGTGTTTACCTAG 58.785 37.037 18.09 0.00 46.66 3.02
39 40 6.397217 AATTACCATGGGTGTTTACCTAGT 57.603 37.500 18.09 0.00 46.66 2.57
40 41 3.994931 ACCATGGGTGTTTACCTAGTC 57.005 47.619 18.09 0.00 46.66 2.59
41 42 2.235402 ACCATGGGTGTTTACCTAGTCG 59.765 50.000 18.09 0.00 46.66 4.18
42 43 2.277084 CATGGGTGTTTACCTAGTCGC 58.723 52.381 0.00 0.00 46.66 5.19
43 44 0.609662 TGGGTGTTTACCTAGTCGCC 59.390 55.000 0.00 0.00 46.66 5.54
44 45 0.609662 GGGTGTTTACCTAGTCGCCA 59.390 55.000 0.00 0.00 46.66 5.69
45 46 1.673923 GGGTGTTTACCTAGTCGCCAC 60.674 57.143 0.00 0.00 46.66 5.01
46 47 1.343506 GTGTTTACCTAGTCGCCACG 58.656 55.000 0.00 0.00 0.00 4.94
47 48 0.961019 TGTTTACCTAGTCGCCACGT 59.039 50.000 0.00 0.00 0.00 4.49
48 49 2.095263 GTGTTTACCTAGTCGCCACGTA 60.095 50.000 0.00 0.00 0.00 3.57
49 50 2.095263 TGTTTACCTAGTCGCCACGTAC 60.095 50.000 0.00 0.00 0.00 3.67
50 51 1.819928 TTACCTAGTCGCCACGTACA 58.180 50.000 0.00 0.00 0.00 2.90
51 52 1.086696 TACCTAGTCGCCACGTACAC 58.913 55.000 0.00 0.00 0.00 2.90
52 53 1.226211 CCTAGTCGCCACGTACACG 60.226 63.158 0.00 0.00 46.33 4.49
53 54 1.866496 CTAGTCGCCACGTACACGC 60.866 63.158 0.85 0.00 44.43 5.34
54 55 2.517391 CTAGTCGCCACGTACACGCA 62.517 60.000 0.85 0.00 44.43 5.24
55 56 2.127634 TAGTCGCCACGTACACGCAA 62.128 55.000 0.85 0.00 44.43 4.85
56 57 3.031457 TCGCCACGTACACGCAAC 61.031 61.111 0.85 0.00 44.43 4.17
57 58 3.033764 CGCCACGTACACGCAACT 61.034 61.111 0.85 0.00 44.43 3.16
58 59 2.549282 GCCACGTACACGCAACTG 59.451 61.111 0.85 0.00 44.43 3.16
59 60 2.549282 CCACGTACACGCAACTGC 59.451 61.111 0.85 0.00 44.43 4.40
60 61 2.241190 CCACGTACACGCAACTGCA 61.241 57.895 0.85 0.00 44.43 4.41
61 62 1.201578 CACGTACACGCAACTGCAG 59.798 57.895 13.48 13.48 44.43 4.41
62 63 1.227147 ACGTACACGCAACTGCAGT 60.227 52.632 15.25 15.25 44.43 4.40
63 64 0.808453 ACGTACACGCAACTGCAGTT 60.808 50.000 26.36 26.36 44.43 3.16
83 84 2.705730 TGTCATCCAACAACATACCGG 58.294 47.619 0.00 0.00 0.00 5.28
84 85 2.039216 TGTCATCCAACAACATACCGGT 59.961 45.455 13.98 13.98 0.00 5.28
85 86 2.418628 GTCATCCAACAACATACCGGTG 59.581 50.000 19.93 3.36 0.00 4.94
86 87 2.039216 TCATCCAACAACATACCGGTGT 59.961 45.455 19.93 8.05 0.00 4.16
87 88 2.172851 TCCAACAACATACCGGTGTC 57.827 50.000 19.93 0.00 0.00 3.67
88 89 0.793861 CCAACAACATACCGGTGTCG 59.206 55.000 19.93 7.84 0.00 4.35
89 90 1.504359 CAACAACATACCGGTGTCGT 58.496 50.000 19.93 8.58 33.95 4.34
90 91 1.193650 CAACAACATACCGGTGTCGTG 59.806 52.381 19.93 13.11 33.95 4.35
91 92 0.390124 ACAACATACCGGTGTCGTGT 59.610 50.000 19.93 13.80 33.95 4.49
92 93 0.787787 CAACATACCGGTGTCGTGTG 59.212 55.000 19.93 8.70 33.95 3.82
93 94 0.947180 AACATACCGGTGTCGTGTGC 60.947 55.000 19.93 0.00 33.95 4.57
94 95 2.126228 ATACCGGTGTCGTGTGCG 60.126 61.111 19.93 0.00 39.92 5.34
99 100 3.632107 GGTGTCGTGTGCGCGAAA 61.632 61.111 12.10 1.38 42.82 3.46
100 101 2.321740 GTGTCGTGTGCGCGAAAA 59.678 55.556 12.10 0.00 42.82 2.29
101 102 1.717728 GTGTCGTGTGCGCGAAAAG 60.718 57.895 12.10 0.00 42.82 2.27
102 103 2.791331 GTCGTGTGCGCGAAAAGC 60.791 61.111 12.10 0.00 42.82 3.51
112 113 3.339731 CGAAAAGCAGTTCGCCCA 58.660 55.556 8.58 0.00 43.38 5.36
113 114 1.082104 CGAAAAGCAGTTCGCCCAC 60.082 57.895 8.58 0.00 43.38 4.61
114 115 1.781025 CGAAAAGCAGTTCGCCCACA 61.781 55.000 8.58 0.00 43.38 4.17
115 116 0.317854 GAAAAGCAGTTCGCCCACAC 60.318 55.000 0.00 0.00 44.04 3.82
116 117 2.058829 AAAAGCAGTTCGCCCACACG 62.059 55.000 0.00 0.00 44.04 4.49
127 128 2.125713 CCACACGCGCATGGACTA 60.126 61.111 21.58 0.00 38.34 2.59
128 129 2.167219 CCACACGCGCATGGACTAG 61.167 63.158 21.58 0.00 38.34 2.57
129 130 1.153842 CACACGCGCATGGACTAGA 60.154 57.895 8.88 0.00 0.00 2.43
130 131 0.528466 CACACGCGCATGGACTAGAT 60.528 55.000 8.88 0.00 0.00 1.98
131 132 1.029681 ACACGCGCATGGACTAGATA 58.970 50.000 8.88 0.00 0.00 1.98
132 133 1.001268 ACACGCGCATGGACTAGATAG 60.001 52.381 8.88 0.00 0.00 2.08
133 134 1.001268 CACGCGCATGGACTAGATAGT 60.001 52.381 5.73 0.00 39.71 2.12
134 135 1.001268 ACGCGCATGGACTAGATAGTG 60.001 52.381 5.73 0.00 36.50 2.74
135 136 1.667177 CGCGCATGGACTAGATAGTGG 60.667 57.143 8.75 0.00 36.50 4.00
136 137 1.937108 GCGCATGGACTAGATAGTGGC 60.937 57.143 0.30 0.00 36.50 5.01
137 138 1.615883 CGCATGGACTAGATAGTGGCT 59.384 52.381 0.00 0.00 36.50 4.75
138 139 2.608998 CGCATGGACTAGATAGTGGCTG 60.609 54.545 0.00 0.00 36.50 4.85
139 140 2.366916 GCATGGACTAGATAGTGGCTGT 59.633 50.000 0.00 0.00 36.50 4.40
140 141 3.801638 GCATGGACTAGATAGTGGCTGTG 60.802 52.174 0.00 0.00 36.50 3.66
141 142 3.101643 TGGACTAGATAGTGGCTGTGT 57.898 47.619 0.00 0.00 36.50 3.72
142 143 2.760650 TGGACTAGATAGTGGCTGTGTG 59.239 50.000 0.00 0.00 36.50 3.82
143 144 2.101582 GGACTAGATAGTGGCTGTGTGG 59.898 54.545 0.00 0.00 36.50 4.17
144 145 3.024547 GACTAGATAGTGGCTGTGTGGA 58.975 50.000 0.00 0.00 36.50 4.02
145 146 2.761208 ACTAGATAGTGGCTGTGTGGAC 59.239 50.000 0.00 0.00 34.72 4.02
146 147 1.644509 AGATAGTGGCTGTGTGGACA 58.355 50.000 0.00 0.00 0.00 4.02
147 148 5.650834 ACTAGATAGTGGCTGTGTGGACAG 61.651 50.000 0.00 0.00 42.82 3.51
148 149 7.802972 ACTAGATAGTGGCTGTGTGGACAGA 62.803 48.000 6.38 0.00 42.70 3.41
158 159 3.713288 TGTGTGGACAGAAACTAGTTCG 58.287 45.455 8.95 3.44 41.52 3.95
159 160 2.475487 GTGTGGACAGAAACTAGTTCGC 59.525 50.000 8.95 4.48 41.52 4.70
160 161 2.067013 GTGGACAGAAACTAGTTCGCC 58.933 52.381 8.95 6.87 41.52 5.54
161 162 1.689813 TGGACAGAAACTAGTTCGCCA 59.310 47.619 8.95 9.26 41.52 5.69
162 163 2.067013 GGACAGAAACTAGTTCGCCAC 58.933 52.381 8.95 1.48 41.52 5.01
163 164 2.547218 GGACAGAAACTAGTTCGCCACA 60.547 50.000 8.95 0.00 41.52 4.17
164 165 2.475487 GACAGAAACTAGTTCGCCACAC 59.525 50.000 8.95 0.00 41.52 3.82
165 166 2.159014 ACAGAAACTAGTTCGCCACACA 60.159 45.455 8.95 0.00 41.52 3.72
166 167 2.476619 CAGAAACTAGTTCGCCACACAG 59.523 50.000 8.95 0.00 41.52 3.66
167 168 1.194772 GAAACTAGTTCGCCACACAGC 59.805 52.381 8.95 0.00 0.00 4.40
191 192 4.980903 GGCAAACCGCGTGCTGTG 62.981 66.667 18.06 4.44 43.84 3.66
200 201 3.740397 CGTGCTGTGGGGCATGTG 61.740 66.667 0.00 0.00 44.34 3.21
201 202 3.376078 GTGCTGTGGGGCATGTGG 61.376 66.667 0.00 0.00 44.34 4.17
202 203 3.578286 TGCTGTGGGGCATGTGGA 61.578 61.111 0.00 0.00 37.29 4.02
203 204 3.064324 GCTGTGGGGCATGTGGAC 61.064 66.667 0.00 0.00 0.00 4.02
204 205 2.747460 CTGTGGGGCATGTGGACG 60.747 66.667 0.00 0.00 0.00 4.79
205 206 3.245346 TGTGGGGCATGTGGACGA 61.245 61.111 0.00 0.00 0.00 4.20
206 207 2.033448 GTGGGGCATGTGGACGAA 59.967 61.111 0.00 0.00 0.00 3.85
207 208 2.033448 TGGGGCATGTGGACGAAC 59.967 61.111 0.00 0.00 0.00 3.95
208 209 2.351276 GGGGCATGTGGACGAACT 59.649 61.111 0.00 0.00 0.00 3.01
209 210 1.745489 GGGGCATGTGGACGAACTC 60.745 63.158 0.00 0.00 0.00 3.01
210 211 1.296715 GGGCATGTGGACGAACTCT 59.703 57.895 0.00 0.00 0.00 3.24
211 212 0.741221 GGGCATGTGGACGAACTCTC 60.741 60.000 0.00 0.00 0.00 3.20
212 213 0.741221 GGCATGTGGACGAACTCTCC 60.741 60.000 0.00 0.00 0.00 3.71
213 214 0.037326 GCATGTGGACGAACTCTCCA 60.037 55.000 0.00 0.00 35.29 3.86
214 215 1.608025 GCATGTGGACGAACTCTCCAA 60.608 52.381 0.00 0.00 39.60 3.53
215 216 2.069273 CATGTGGACGAACTCTCCAAC 58.931 52.381 0.00 0.00 39.60 3.77
216 217 0.031585 TGTGGACGAACTCTCCAACG 59.968 55.000 0.00 0.00 39.60 4.10
217 218 1.006571 TGGACGAACTCTCCAACGC 60.007 57.895 0.00 0.00 34.70 4.84
218 219 1.737008 GGACGAACTCTCCAACGCC 60.737 63.158 0.00 0.00 0.00 5.68
219 220 1.737008 GACGAACTCTCCAACGCCC 60.737 63.158 0.00 0.00 0.00 6.13
220 221 2.342279 CGAACTCTCCAACGCCCA 59.658 61.111 0.00 0.00 0.00 5.36
221 222 2.027625 CGAACTCTCCAACGCCCAC 61.028 63.158 0.00 0.00 0.00 4.61
222 223 1.671379 GAACTCTCCAACGCCCACC 60.671 63.158 0.00 0.00 0.00 4.61
223 224 3.192103 AACTCTCCAACGCCCACCC 62.192 63.158 0.00 0.00 0.00 4.61
224 225 4.760047 CTCTCCAACGCCCACCCG 62.760 72.222 0.00 0.00 0.00 5.28
233 234 4.856801 GCCCACCCGCACGATGAT 62.857 66.667 0.00 0.00 0.00 2.45
234 235 2.896854 CCCACCCGCACGATGATG 60.897 66.667 0.00 0.00 0.00 3.07
235 236 3.576356 CCACCCGCACGATGATGC 61.576 66.667 0.00 0.00 42.48 3.91
236 237 3.576356 CACCCGCACGATGATGCC 61.576 66.667 0.00 0.00 42.99 4.40
237 238 4.856801 ACCCGCACGATGATGCCC 62.857 66.667 0.00 0.00 42.99 5.36
238 239 4.854924 CCCGCACGATGATGCCCA 62.855 66.667 0.00 0.00 42.99 5.36
239 240 3.576356 CCGCACGATGATGCCCAC 61.576 66.667 0.00 0.00 42.99 4.61
240 241 2.819154 CGCACGATGATGCCCACA 60.819 61.111 0.00 0.00 42.99 4.17
241 242 2.182181 CGCACGATGATGCCCACAT 61.182 57.895 0.00 0.00 42.99 3.21
242 243 1.357690 GCACGATGATGCCCACATG 59.642 57.895 0.00 0.00 39.86 3.21
243 244 2.027325 CACGATGATGCCCACATGG 58.973 57.895 0.00 0.00 36.35 3.66
255 256 3.899052 CCCACATGGCATTCAAATTCT 57.101 42.857 0.00 0.00 0.00 2.40
257 258 5.341872 CCCACATGGCATTCAAATTCTAA 57.658 39.130 0.00 0.00 0.00 2.10
258 259 5.111293 CCCACATGGCATTCAAATTCTAAC 58.889 41.667 0.00 0.00 0.00 2.34
259 260 4.799949 CCACATGGCATTCAAATTCTAACG 59.200 41.667 0.00 0.00 0.00 3.18
260 261 4.799949 CACATGGCATTCAAATTCTAACGG 59.200 41.667 0.00 0.00 0.00 4.44
261 262 4.704540 ACATGGCATTCAAATTCTAACGGA 59.295 37.500 0.00 0.00 0.00 4.69
262 263 5.360714 ACATGGCATTCAAATTCTAACGGAT 59.639 36.000 0.00 0.00 0.00 4.18
263 264 5.913137 TGGCATTCAAATTCTAACGGATT 57.087 34.783 0.00 0.00 0.00 3.01
264 265 6.279513 TGGCATTCAAATTCTAACGGATTT 57.720 33.333 0.00 0.00 0.00 2.17
265 266 6.329496 TGGCATTCAAATTCTAACGGATTTC 58.671 36.000 0.00 0.00 0.00 2.17
266 267 6.152661 TGGCATTCAAATTCTAACGGATTTCT 59.847 34.615 0.00 0.00 0.00 2.52
267 268 7.035612 GGCATTCAAATTCTAACGGATTTCTT 58.964 34.615 0.00 0.00 0.00 2.52
268 269 7.545615 GGCATTCAAATTCTAACGGATTTCTTT 59.454 33.333 0.00 0.00 0.00 2.52
269 270 9.567848 GCATTCAAATTCTAACGGATTTCTTTA 57.432 29.630 0.00 0.00 0.00 1.85
272 273 9.509956 TTCAAATTCTAACGGATTTCTTTAGGA 57.490 29.630 0.00 0.00 0.00 2.94
273 274 9.681062 TCAAATTCTAACGGATTTCTTTAGGAT 57.319 29.630 0.00 0.00 0.00 3.24
276 277 7.766219 TTCTAACGGATTTCTTTAGGATTCG 57.234 36.000 0.00 0.00 0.00 3.34
277 278 6.870769 TCTAACGGATTTCTTTAGGATTCGT 58.129 36.000 0.00 0.00 0.00 3.85
278 279 5.796350 AACGGATTTCTTTAGGATTCGTG 57.204 39.130 0.00 0.00 0.00 4.35
279 280 4.828829 ACGGATTTCTTTAGGATTCGTGT 58.171 39.130 0.00 0.00 0.00 4.49
280 281 5.969423 ACGGATTTCTTTAGGATTCGTGTA 58.031 37.500 0.00 0.00 0.00 2.90
281 282 6.400568 ACGGATTTCTTTAGGATTCGTGTAA 58.599 36.000 0.00 0.00 0.00 2.41
282 283 6.875195 ACGGATTTCTTTAGGATTCGTGTAAA 59.125 34.615 0.00 0.00 0.00 2.01
283 284 7.388500 ACGGATTTCTTTAGGATTCGTGTAAAA 59.612 33.333 0.00 0.00 0.00 1.52
284 285 7.691050 CGGATTTCTTTAGGATTCGTGTAAAAC 59.309 37.037 0.00 0.00 0.00 2.43
285 286 8.508875 GGATTTCTTTAGGATTCGTGTAAAACA 58.491 33.333 0.00 0.00 0.00 2.83
286 287 9.543018 GATTTCTTTAGGATTCGTGTAAAACAG 57.457 33.333 0.00 0.00 0.00 3.16
287 288 8.665643 TTTCTTTAGGATTCGTGTAAAACAGA 57.334 30.769 0.00 0.00 0.00 3.41
288 289 8.665643 TTCTTTAGGATTCGTGTAAAACAGAA 57.334 30.769 0.00 0.00 0.00 3.02
289 290 8.842358 TCTTTAGGATTCGTGTAAAACAGAAT 57.158 30.769 5.16 5.16 35.87 2.40
290 291 9.280174 TCTTTAGGATTCGTGTAAAACAGAATT 57.720 29.630 6.34 0.00 34.42 2.17
294 295 7.515643 AGGATTCGTGTAAAACAGAATTAACG 58.484 34.615 0.00 0.00 34.42 3.18
295 296 6.247791 GGATTCGTGTAAAACAGAATTAACGC 59.752 38.462 0.00 0.00 34.42 4.84
296 297 5.654317 TCGTGTAAAACAGAATTAACGCA 57.346 34.783 0.00 0.00 0.00 5.24
297 298 5.672051 TCGTGTAAAACAGAATTAACGCAG 58.328 37.500 0.00 0.00 0.00 5.18
298 299 5.462729 TCGTGTAAAACAGAATTAACGCAGA 59.537 36.000 0.00 0.00 0.00 4.26
299 300 6.146510 TCGTGTAAAACAGAATTAACGCAGAT 59.853 34.615 0.00 0.00 0.00 2.90
300 301 6.795114 CGTGTAAAACAGAATTAACGCAGATT 59.205 34.615 0.00 0.00 0.00 2.40
301 302 7.953173 CGTGTAAAACAGAATTAACGCAGATTA 59.047 33.333 0.00 0.00 0.00 1.75
302 303 9.601971 GTGTAAAACAGAATTAACGCAGATTAA 57.398 29.630 0.00 0.00 0.00 1.40
305 306 7.796958 AAACAGAATTAACGCAGATTAAAGC 57.203 32.000 0.00 0.00 0.00 3.51
306 307 6.494893 ACAGAATTAACGCAGATTAAAGCA 57.505 33.333 0.00 0.00 0.00 3.91
307 308 7.088589 ACAGAATTAACGCAGATTAAAGCAT 57.911 32.000 0.00 0.00 0.00 3.79
308 309 6.968904 ACAGAATTAACGCAGATTAAAGCATG 59.031 34.615 0.00 0.00 0.00 4.06
309 310 6.968904 CAGAATTAACGCAGATTAAAGCATGT 59.031 34.615 0.00 0.00 0.00 3.21
310 311 6.968904 AGAATTAACGCAGATTAAAGCATGTG 59.031 34.615 0.00 0.00 0.00 3.21
311 312 3.492421 AACGCAGATTAAAGCATGTGG 57.508 42.857 0.00 0.00 0.00 4.17
312 313 1.745087 ACGCAGATTAAAGCATGTGGG 59.255 47.619 0.00 0.00 36.68 4.61
313 314 1.534595 CGCAGATTAAAGCATGTGGGC 60.535 52.381 0.00 0.00 0.00 5.36
314 315 1.477700 GCAGATTAAAGCATGTGGGCA 59.522 47.619 0.00 0.00 35.83 5.36
315 316 2.094078 GCAGATTAAAGCATGTGGGCAA 60.094 45.455 0.00 0.00 35.83 4.52
316 317 3.431207 GCAGATTAAAGCATGTGGGCAAT 60.431 43.478 0.00 0.00 35.83 3.56
317 318 4.116961 CAGATTAAAGCATGTGGGCAATG 58.883 43.478 0.00 0.00 35.83 2.82
318 319 3.770933 AGATTAAAGCATGTGGGCAATGT 59.229 39.130 0.00 0.00 35.83 2.71
319 320 3.316071 TTAAAGCATGTGGGCAATGTG 57.684 42.857 0.00 0.00 35.83 3.21
320 321 0.320946 AAAGCATGTGGGCAATGTGC 60.321 50.000 0.00 0.00 44.08 4.57
330 331 1.782807 GCAATGTGCAAACATGCCG 59.217 52.632 5.37 0.00 44.26 5.69
331 332 1.782807 CAATGTGCAAACATGCCGC 59.217 52.632 0.00 0.00 0.00 6.53
332 333 0.944788 CAATGTGCAAACATGCCGCA 60.945 50.000 0.00 0.00 0.00 5.69
334 335 3.098958 GTGCAAACATGCCGCACG 61.099 61.111 16.09 0.00 45.69 5.34
335 336 3.590857 TGCAAACATGCCGCACGT 61.591 55.556 0.00 0.00 0.00 4.49
336 337 3.098958 GCAAACATGCCGCACGTG 61.099 61.111 12.28 12.28 41.41 4.49
345 346 2.744318 CCGCACGTGTGGGCATTA 60.744 61.111 35.43 0.00 41.84 1.90
346 347 2.112198 CCGCACGTGTGGGCATTAT 61.112 57.895 35.43 0.00 41.84 1.28
347 348 1.351707 CGCACGTGTGGGCATTATC 59.648 57.895 21.32 0.00 36.73 1.75
348 349 1.365368 CGCACGTGTGGGCATTATCA 61.365 55.000 21.32 0.00 36.73 2.15
349 350 1.024271 GCACGTGTGGGCATTATCAT 58.976 50.000 18.38 0.00 0.00 2.45
350 351 1.405105 GCACGTGTGGGCATTATCATT 59.595 47.619 18.38 0.00 0.00 2.57
351 352 2.159254 GCACGTGTGGGCATTATCATTT 60.159 45.455 18.38 0.00 0.00 2.32
352 353 3.437428 CACGTGTGGGCATTATCATTTG 58.563 45.455 7.58 0.00 0.00 2.32
353 354 2.426738 ACGTGTGGGCATTATCATTTGG 59.573 45.455 0.00 0.00 0.00 3.28
354 355 2.223782 CGTGTGGGCATTATCATTTGGG 60.224 50.000 0.00 0.00 0.00 4.12
410 411 6.821388 TGTTACAAAATAGTGGCCAAATTGT 58.179 32.000 7.24 16.35 34.31 2.71
420 421 5.296748 AGTGGCCAAATTGTATTGTGTTTC 58.703 37.500 7.24 0.00 0.00 2.78
422 423 5.405269 GTGGCCAAATTGTATTGTGTTTCTC 59.595 40.000 7.24 0.00 0.00 2.87
423 424 4.929211 GGCCAAATTGTATTGTGTTTCTCC 59.071 41.667 0.00 0.00 0.00 3.71
425 426 5.405269 GCCAAATTGTATTGTGTTTCTCCAC 59.595 40.000 0.00 0.00 35.86 4.02
429 430 9.743057 CAAATTGTATTGTGTTTCTCCACTAAA 57.257 29.630 0.00 0.00 36.30 1.85
430 431 9.744468 AAATTGTATTGTGTTTCTCCACTAAAC 57.256 29.630 0.00 0.00 37.35 2.01
433 434 8.514330 TGTATTGTGTTTCTCCACTAAACTTT 57.486 30.769 0.00 0.00 37.64 2.66
436 437 6.202516 TGTGTTTCTCCACTAAACTTTTGG 57.797 37.500 0.00 0.00 37.64 3.28
465 466 4.782019 ATATGTGTTGCAACGTGGAAAT 57.218 36.364 23.79 9.93 26.96 2.17
497 498 4.088648 CGCGGAATAGTAAACTTTGCAAG 58.911 43.478 0.00 0.00 0.00 4.01
618 634 5.428253 TGATAGAAGTGTACTTTGATGGGC 58.572 41.667 0.00 0.00 36.11 5.36
713 729 2.224161 TGCTTGTATGTTTGGGTTTGGC 60.224 45.455 0.00 0.00 0.00 4.52
856 872 4.508124 GGCACTATTATTCCAACTCAGACG 59.492 45.833 0.00 0.00 0.00 4.18
947 963 1.002134 GTGCCACCAGGTGCACTAT 60.002 57.895 27.09 2.70 37.48 2.12
948 964 0.251916 GTGCCACCAGGTGCACTATA 59.748 55.000 27.09 5.96 37.48 1.31
949 965 1.134098 GTGCCACCAGGTGCACTATAT 60.134 52.381 27.09 0.00 37.48 0.86
950 966 2.104111 GTGCCACCAGGTGCACTATATA 59.896 50.000 27.09 2.97 37.48 0.86
1166 1183 2.171237 TCCTCAATGCTACACTGGATGG 59.829 50.000 0.00 0.00 0.00 3.51
1245 1262 1.484240 CCCAAGGTCAGTGATCCTCTC 59.516 57.143 12.78 0.00 33.09 3.20
1309 1339 7.023575 CCTCATTGTTTACCTTCGATTTTCTG 58.976 38.462 0.00 0.00 0.00 3.02
1316 1346 8.225107 TGTTTACCTTCGATTTTCTGAAATACG 58.775 33.333 17.12 17.12 35.65 3.06
1412 1442 9.691362 GTGTAATCATGTTGTATTGTCCTTTTT 57.309 29.630 0.00 0.00 0.00 1.94
1418 1448 6.922247 TGTTGTATTGTCCTTTTTACACGA 57.078 33.333 0.00 0.00 0.00 4.35
1524 1554 5.172687 TGCTAATTGAGTAACCATGTGGA 57.827 39.130 5.96 0.00 38.94 4.02
1658 1688 1.237285 TGCAGCTCCTTTTTCGCCTC 61.237 55.000 0.00 0.00 0.00 4.70
1668 1698 2.074547 TTTTCGCCTCCTCAGTTACG 57.925 50.000 0.00 0.00 0.00 3.18
1741 1779 2.621055 AGGAGTGTAGAAGCGCATCTAG 59.379 50.000 21.74 0.00 32.72 2.43
1760 1798 7.633772 GCATCTAGTGACTCCCTTGATTTTCTA 60.634 40.741 0.00 0.00 0.00 2.10
1767 1805 8.261522 GTGACTCCCTTGATTTTCTACTAGATT 58.738 37.037 0.00 0.00 0.00 2.40
1768 1806 8.478877 TGACTCCCTTGATTTTCTACTAGATTC 58.521 37.037 0.00 0.00 0.00 2.52
1801 1839 2.124403 GGTGCCCAGGCTCATCTG 60.124 66.667 10.58 0.00 42.51 2.90
1815 5620 1.021390 CATCTGCACCCGGTCAGAAC 61.021 60.000 18.21 0.00 41.96 3.01
1823 5628 3.004944 GCACCCGGTCAGAACAAAAATAA 59.995 43.478 0.00 0.00 0.00 1.40
1824 5629 4.500035 GCACCCGGTCAGAACAAAAATAAA 60.500 41.667 0.00 0.00 0.00 1.40
1863 5669 8.506168 AATCTATTTCCTTTTGCGTGATAGAA 57.494 30.769 0.00 0.00 30.96 2.10
1873 5679 7.220683 CCTTTTGCGTGATAGAAAATTGTATGG 59.779 37.037 0.00 0.00 0.00 2.74
1883 5689 4.700213 AGAAAATTGTATGGGTGAGGTTCG 59.300 41.667 0.00 0.00 0.00 3.95
1894 5700 2.296190 GGTGAGGTTCGCTCCAAATTTT 59.704 45.455 0.00 0.00 0.00 1.82
1897 5703 4.915667 GTGAGGTTCGCTCCAAATTTTAAC 59.084 41.667 0.00 0.00 0.00 2.01
1918 5724 3.944015 ACTTATTTGGACATCTGAGCAGC 59.056 43.478 0.00 0.00 0.00 5.25
1922 5728 1.273759 TGGACATCTGAGCAGCTCTT 58.726 50.000 23.15 5.67 0.00 2.85
1926 5732 1.829849 ACATCTGAGCAGCTCTTAGCA 59.170 47.619 23.15 2.15 45.56 3.49
1962 5768 1.599542 GGCTCAGAACAGTGTGTGAAC 59.400 52.381 0.00 0.00 0.00 3.18
2029 5835 5.374921 AGTTGCTCAGATATCCAAATGAGG 58.625 41.667 16.99 4.37 39.63 3.86
2038 5844 8.689061 TCAGATATCCAAATGAGGTGAAATTTG 58.311 33.333 0.00 0.00 41.41 2.32
2074 5880 5.579511 ACGCATAAACTTATCTACCACACAC 59.420 40.000 0.00 0.00 0.00 3.82
2141 5949 3.887621 TTCGTTAGAGGGGTGAAGATG 57.112 47.619 0.00 0.00 0.00 2.90
2162 5970 3.302347 CTCGGGAGCAGAAACGCCT 62.302 63.158 0.00 0.00 0.00 5.52
2169 5977 0.322975 AGCAGAAACGCCTCACTCAT 59.677 50.000 0.00 0.00 0.00 2.90
2170 5978 1.160137 GCAGAAACGCCTCACTCATT 58.840 50.000 0.00 0.00 0.00 2.57
2171 5979 1.129437 GCAGAAACGCCTCACTCATTC 59.871 52.381 0.00 0.00 0.00 2.67
2172 5980 1.734465 CAGAAACGCCTCACTCATTCC 59.266 52.381 0.00 0.00 0.00 3.01
2173 5981 1.087501 GAAACGCCTCACTCATTCCC 58.912 55.000 0.00 0.00 0.00 3.97
2194 6002 2.233431 CTCCCAGCTATATCTGCACTCC 59.767 54.545 0.00 0.00 32.87 3.85
2207 6015 1.271325 TGCACTCCGTGAATCCATGTT 60.271 47.619 0.00 0.00 35.23 2.71
2215 6023 5.249420 TCCGTGAATCCATGTTCAATGTAA 58.751 37.500 0.65 0.00 39.61 2.41
2216 6024 5.885352 TCCGTGAATCCATGTTCAATGTAAT 59.115 36.000 0.65 0.00 39.61 1.89
2217 6025 7.051000 TCCGTGAATCCATGTTCAATGTAATA 58.949 34.615 0.65 0.00 39.61 0.98
2218 6026 7.011950 TCCGTGAATCCATGTTCAATGTAATAC 59.988 37.037 0.65 0.00 39.61 1.89
2219 6027 7.012327 CCGTGAATCCATGTTCAATGTAATACT 59.988 37.037 0.65 0.00 39.61 2.12
2349 6157 6.150140 GCCTTCAGATAGGGCTTGTAATATTG 59.850 42.308 0.00 0.00 42.31 1.90
2355 6163 4.021102 AGGGCTTGTAATATTGGGATCG 57.979 45.455 0.00 0.00 0.00 3.69
2544 6353 8.362860 AGTCAAAATCATGAACTATCATCTCG 57.637 34.615 0.00 0.00 44.53 4.04
2559 6368 3.618594 TCATCTCGTTTGCAGCATCTAAC 59.381 43.478 0.00 0.00 0.00 2.34
2657 6466 3.261580 GTGATCATGACGTCCATCAACA 58.738 45.455 18.41 8.35 31.94 3.33
2698 6507 1.152271 TCCCTCCTGGACCTCTTTCTT 59.848 52.381 0.00 0.00 38.61 2.52
3319 7136 2.358737 CAGTTCCTGGACACGGCC 60.359 66.667 0.00 0.00 0.00 6.13
3522 7339 2.046988 CAGGTGCATCCGCTGACA 60.047 61.111 0.00 0.00 41.99 3.58
3526 7343 1.812922 GTGCATCCGCTGACAGAGG 60.813 63.158 18.45 18.45 39.64 3.69
3527 7344 2.285773 TGCATCCGCTGACAGAGGT 61.286 57.895 22.73 9.35 36.49 3.85
3528 7345 1.812922 GCATCCGCTGACAGAGGTG 60.813 63.158 22.73 19.63 36.49 4.00
3555 7374 2.825836 GTCAGCGGGCTGGAATGG 60.826 66.667 19.64 0.00 43.75 3.16
3556 7375 4.802051 TCAGCGGGCTGGAATGGC 62.802 66.667 19.64 0.00 43.75 4.40
3567 7386 2.287427 GCTGGAATGGCTCATCGAATTG 60.287 50.000 0.00 0.00 0.00 2.32
3596 7415 3.128589 GTGTCCTTGTTCTTGTTTCTGCA 59.871 43.478 0.00 0.00 0.00 4.41
3621 7448 0.594602 GTGGCTGGTTTTTACCCGAC 59.405 55.000 0.00 0.00 0.00 4.79
3627 7454 2.812011 CTGGTTTTTACCCGACTTGAGG 59.188 50.000 0.00 0.00 0.00 3.86
3646 7476 2.301870 AGGTTGATGTTGGAGTTCGCTA 59.698 45.455 0.00 0.00 0.00 4.26
3674 7504 1.400500 GGTGTATTTTGCAACGTCGGG 60.400 52.381 0.00 0.00 0.00 5.14
3805 7825 2.672961 TGTTAAGGCATCTCCGACTG 57.327 50.000 0.00 0.00 40.77 3.51
3817 7837 4.508461 TCTCCGACTGTAAATCGAACAA 57.492 40.909 0.00 0.00 42.25 2.83
3819 7839 4.022589 TCTCCGACTGTAAATCGAACAACT 60.023 41.667 0.00 0.00 42.25 3.16
3821 7841 5.771469 TCCGACTGTAAATCGAACAACTTA 58.229 37.500 0.00 0.00 42.25 2.24
3832 7852 3.057734 CGAACAACTTATCTATCCGCCC 58.942 50.000 0.00 0.00 0.00 6.13
3863 7883 1.901085 GAGAGCCGACCATCCAACT 59.099 57.895 0.00 0.00 0.00 3.16
3869 7889 1.299541 CCGACCATCCAACTGCATAC 58.700 55.000 0.00 0.00 0.00 2.39
3875 7895 4.929479 ACCATCCAACTGCATACCTAAAA 58.071 39.130 0.00 0.00 0.00 1.52
3876 7896 4.949856 ACCATCCAACTGCATACCTAAAAG 59.050 41.667 0.00 0.00 0.00 2.27
3878 7898 5.066505 CCATCCAACTGCATACCTAAAAGTC 59.933 44.000 0.00 0.00 0.00 3.01
3915 7941 3.131396 CAAATACATAGCTCCCGGTCAC 58.869 50.000 0.00 0.00 0.00 3.67
3916 7942 0.959553 ATACATAGCTCCCGGTCACG 59.040 55.000 0.00 0.00 40.55 4.35
3920 7946 1.453762 ATAGCTCCCGGTCACGTAGC 61.454 60.000 0.00 0.00 43.46 3.58
3966 10810 3.256704 TGGTTGAGAGACTTTACCCCAT 58.743 45.455 0.00 0.00 0.00 4.00
3973 10817 1.427368 AGACTTTACCCCATGGTTGCA 59.573 47.619 11.73 0.00 44.75 4.08
3983 10827 2.439409 CCATGGTTGCAGATGAGTTCA 58.561 47.619 2.57 0.00 0.00 3.18
4004 10848 2.463752 TCGGTGTAGGGCTCTAAATGT 58.536 47.619 0.00 0.00 0.00 2.71
4026 10870 6.757237 TGTTTGTGCTCATGAAACCAAATAT 58.243 32.000 13.31 0.00 0.00 1.28
4027 10871 7.890515 TGTTTGTGCTCATGAAACCAAATATA 58.109 30.769 13.31 4.88 0.00 0.86
4049 11816 4.696479 AATGTTGGCCCAAAATGTTACA 57.304 36.364 0.00 0.00 0.00 2.41
4058 11825 5.454897 GGCCCAAAATGTTACACCCTTTTAA 60.455 40.000 0.00 0.00 0.00 1.52
4065 11832 4.970711 TGTTACACCCTTTTAATCCGTGA 58.029 39.130 0.00 0.00 0.00 4.35
4088 11855 7.065204 GTGACATAGATCTGATCGATGCTAGTA 59.935 40.741 29.10 15.03 43.48 1.82
4095 11862 4.645136 TCTGATCGATGCTAGTAACCAACT 59.355 41.667 0.54 0.00 42.62 3.16
4106 11873 8.018537 TGCTAGTAACCAACTATGTATCACAT 57.981 34.615 0.00 0.00 39.96 3.21
4115 11882 8.318412 ACCAACTATGTATCACATAACAACTCA 58.682 33.333 1.07 0.00 40.23 3.41
4125 11892 5.869344 TCACATAACAACTCATCCTTCTTCG 59.131 40.000 0.00 0.00 0.00 3.79
4168 11935 5.869579 ACTCTTCTTATTTGAACCAGCAGA 58.130 37.500 0.00 0.00 0.00 4.26
4177 11944 4.647424 TTGAACCAGCAGAAAATTCGTT 57.353 36.364 0.00 0.00 0.00 3.85
4178 11945 4.223320 TGAACCAGCAGAAAATTCGTTC 57.777 40.909 0.00 0.00 0.00 3.95
4230 11997 1.344953 CCCCTGCTGGCTGGTATACA 61.345 60.000 15.41 0.00 33.83 2.29
4250 12017 3.118738 ACAAATTCGGCTCTAGGGTGTAG 60.119 47.826 0.00 0.00 0.00 2.74
4261 12028 4.778143 GGTGTAGGTGCCCGGCTG 62.778 72.222 11.61 0.00 0.00 4.85
4288 12055 2.922740 ACGTGTTTGACTGGGTGTAT 57.077 45.000 0.00 0.00 0.00 2.29
4298 12065 2.440247 GGGTGTATGTGCCTGGCC 60.440 66.667 17.53 8.23 0.00 5.36
4341 12108 0.613853 TACCCGTCCTTGTAGCAGCT 60.614 55.000 0.00 0.00 0.00 4.24
4411 12178 2.743928 GCTGACTCGCCTGGTTGG 60.744 66.667 0.00 0.00 39.35 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.387673 CCATGGTAATTATGATTCGTTGCTAGA 59.612 37.037 2.57 0.00 0.00 2.43
1 2 7.361201 CCCATGGTAATTATGATTCGTTGCTAG 60.361 40.741 11.73 0.00 0.00 3.42
2 3 6.429692 CCCATGGTAATTATGATTCGTTGCTA 59.570 38.462 11.73 0.00 0.00 3.49
3 4 5.241506 CCCATGGTAATTATGATTCGTTGCT 59.758 40.000 11.73 0.00 0.00 3.91
4 5 5.009610 ACCCATGGTAATTATGATTCGTTGC 59.990 40.000 11.73 0.00 32.11 4.17
5 6 6.039270 ACACCCATGGTAATTATGATTCGTTG 59.961 38.462 11.73 0.00 32.11 4.10
6 7 6.126409 ACACCCATGGTAATTATGATTCGTT 58.874 36.000 11.73 0.00 32.11 3.85
7 8 5.690865 ACACCCATGGTAATTATGATTCGT 58.309 37.500 11.73 0.00 32.11 3.85
8 9 6.633500 AACACCCATGGTAATTATGATTCG 57.367 37.500 11.73 0.00 32.11 3.34
9 10 8.357402 GGTAAACACCCATGGTAATTATGATTC 58.643 37.037 11.73 0.00 32.11 2.52
10 11 8.065007 AGGTAAACACCCATGGTAATTATGATT 58.935 33.333 11.73 3.14 32.11 2.57
11 12 7.591821 AGGTAAACACCCATGGTAATTATGAT 58.408 34.615 11.73 0.00 32.11 2.45
12 13 6.975949 AGGTAAACACCCATGGTAATTATGA 58.024 36.000 11.73 0.00 32.11 2.15
13 14 7.996644 ACTAGGTAAACACCCATGGTAATTATG 59.003 37.037 11.73 1.67 32.11 1.90
14 15 8.109560 ACTAGGTAAACACCCATGGTAATTAT 57.890 34.615 11.73 0.00 32.11 1.28
15 16 7.513560 ACTAGGTAAACACCCATGGTAATTA 57.486 36.000 11.73 1.92 32.11 1.40
16 17 6.397217 ACTAGGTAAACACCCATGGTAATT 57.603 37.500 11.73 2.90 32.11 1.40
17 18 5.395990 CGACTAGGTAAACACCCATGGTAAT 60.396 44.000 11.73 0.00 32.11 1.89
18 19 4.081531 CGACTAGGTAAACACCCATGGTAA 60.082 45.833 11.73 0.00 32.11 2.85
19 20 3.448301 CGACTAGGTAAACACCCATGGTA 59.552 47.826 11.73 0.00 32.11 3.25
20 21 2.235402 CGACTAGGTAAACACCCATGGT 59.765 50.000 11.73 0.00 35.62 3.55
21 22 2.901249 CGACTAGGTAAACACCCATGG 58.099 52.381 4.14 4.14 0.00 3.66
22 23 2.277084 GCGACTAGGTAAACACCCATG 58.723 52.381 0.00 0.00 0.00 3.66
23 24 1.208776 GGCGACTAGGTAAACACCCAT 59.791 52.381 0.00 0.00 0.00 4.00
24 25 0.609662 GGCGACTAGGTAAACACCCA 59.390 55.000 0.00 0.00 0.00 4.51
25 26 0.609662 TGGCGACTAGGTAAACACCC 59.390 55.000 0.00 0.00 0.00 4.61
26 27 1.718396 GTGGCGACTAGGTAAACACC 58.282 55.000 0.00 0.00 0.00 4.16
27 28 1.336240 ACGTGGCGACTAGGTAAACAC 60.336 52.381 0.00 0.00 0.00 3.32
28 29 0.961019 ACGTGGCGACTAGGTAAACA 59.039 50.000 0.00 0.00 0.00 2.83
29 30 2.095263 TGTACGTGGCGACTAGGTAAAC 60.095 50.000 0.00 0.00 0.00 2.01
30 31 2.095263 GTGTACGTGGCGACTAGGTAAA 60.095 50.000 0.00 0.00 0.00 2.01
31 32 1.468520 GTGTACGTGGCGACTAGGTAA 59.531 52.381 0.00 0.00 0.00 2.85
32 33 1.086696 GTGTACGTGGCGACTAGGTA 58.913 55.000 0.00 0.00 0.00 3.08
33 34 1.878775 GTGTACGTGGCGACTAGGT 59.121 57.895 0.00 0.00 0.00 3.08
34 35 1.226211 CGTGTACGTGGCGACTAGG 60.226 63.158 0.00 0.00 34.11 3.02
35 36 1.866496 GCGTGTACGTGGCGACTAG 60.866 63.158 0.00 0.00 42.22 2.57
36 37 2.127634 TTGCGTGTACGTGGCGACTA 62.128 55.000 0.00 0.00 42.22 2.59
37 38 3.487764 TTGCGTGTACGTGGCGACT 62.488 57.895 0.00 0.00 42.22 4.18
38 39 3.031457 TTGCGTGTACGTGGCGAC 61.031 61.111 0.00 0.00 42.22 5.19
39 40 3.031457 GTTGCGTGTACGTGGCGA 61.031 61.111 0.00 0.00 42.22 5.54
40 41 3.033764 AGTTGCGTGTACGTGGCG 61.034 61.111 0.00 0.57 42.22 5.69
41 42 2.549282 CAGTTGCGTGTACGTGGC 59.451 61.111 0.00 0.00 42.22 5.01
42 43 2.158058 CTGCAGTTGCGTGTACGTGG 62.158 60.000 5.25 0.00 45.83 4.94
43 44 1.201578 CTGCAGTTGCGTGTACGTG 59.798 57.895 5.25 0.00 45.83 4.49
44 45 0.808453 AACTGCAGTTGCGTGTACGT 60.808 50.000 30.66 2.58 45.83 3.57
45 46 1.931551 AACTGCAGTTGCGTGTACG 59.068 52.632 30.66 0.00 45.83 3.67
62 63 3.078097 CCGGTATGTTGTTGGATGACAA 58.922 45.455 0.00 0.00 37.20 3.18
63 64 2.039216 ACCGGTATGTTGTTGGATGACA 59.961 45.455 4.49 0.00 0.00 3.58
64 65 2.418628 CACCGGTATGTTGTTGGATGAC 59.581 50.000 6.87 0.00 0.00 3.06
65 66 2.039216 ACACCGGTATGTTGTTGGATGA 59.961 45.455 6.87 0.00 0.00 2.92
66 67 2.418628 GACACCGGTATGTTGTTGGATG 59.581 50.000 6.87 0.00 31.24 3.51
67 68 2.706890 GACACCGGTATGTTGTTGGAT 58.293 47.619 6.87 0.00 31.24 3.41
68 69 1.605968 CGACACCGGTATGTTGTTGGA 60.606 52.381 6.87 0.00 31.24 3.53
69 70 0.793861 CGACACCGGTATGTTGTTGG 59.206 55.000 6.87 0.00 31.24 3.77
70 71 1.193650 CACGACACCGGTATGTTGTTG 59.806 52.381 6.87 7.36 43.42 3.33
71 72 1.202557 ACACGACACCGGTATGTTGTT 60.203 47.619 6.87 0.99 43.42 2.83
72 73 0.390124 ACACGACACCGGTATGTTGT 59.610 50.000 6.87 9.79 46.25 3.32
73 74 0.787787 CACACGACACCGGTATGTTG 59.212 55.000 6.87 9.03 40.78 3.33
74 75 0.947180 GCACACGACACCGGTATGTT 60.947 55.000 6.87 0.00 40.78 2.71
75 76 1.373748 GCACACGACACCGGTATGT 60.374 57.895 6.87 6.98 40.78 2.29
76 77 2.441378 CGCACACGACACCGGTATG 61.441 63.158 6.87 6.26 43.93 2.39
77 78 2.126228 CGCACACGACACCGGTAT 60.126 61.111 6.87 0.00 43.93 2.73
82 83 3.158011 TTTTCGCGCACACGACACC 62.158 57.895 8.75 0.00 42.78 4.16
83 84 1.717728 CTTTTCGCGCACACGACAC 60.718 57.895 8.75 0.00 42.78 3.67
84 85 2.623718 CTTTTCGCGCACACGACA 59.376 55.556 8.75 0.00 42.78 4.35
85 86 2.791331 GCTTTTCGCGCACACGAC 60.791 61.111 8.75 0.00 42.78 4.34
86 87 3.222126 CTGCTTTTCGCGCACACGA 62.222 57.895 8.75 0.00 43.93 4.35
87 88 2.792543 CTGCTTTTCGCGCACACG 60.793 61.111 8.75 0.00 43.27 4.49
88 89 1.262166 GAACTGCTTTTCGCGCACAC 61.262 55.000 8.75 0.00 43.27 3.82
89 90 1.010125 GAACTGCTTTTCGCGCACA 60.010 52.632 8.75 0.00 43.27 4.57
90 91 2.069277 CGAACTGCTTTTCGCGCAC 61.069 57.895 8.75 0.00 41.73 5.34
91 92 2.248140 CGAACTGCTTTTCGCGCA 59.752 55.556 8.75 0.00 41.73 6.09
96 97 0.317854 GTGTGGGCGAACTGCTTTTC 60.318 55.000 0.00 0.00 45.43 2.29
97 98 1.733526 GTGTGGGCGAACTGCTTTT 59.266 52.632 0.00 0.00 45.43 2.27
98 99 2.542907 CGTGTGGGCGAACTGCTTT 61.543 57.895 0.00 0.00 45.43 3.51
99 100 2.972505 CGTGTGGGCGAACTGCTT 60.973 61.111 0.00 0.00 45.43 3.91
109 110 3.657448 TAGTCCATGCGCGTGTGGG 62.657 63.158 26.86 13.23 36.15 4.61
110 111 2.125713 TAGTCCATGCGCGTGTGG 60.126 61.111 26.86 21.77 36.82 4.17
111 112 0.528466 ATCTAGTCCATGCGCGTGTG 60.528 55.000 26.86 18.24 0.00 3.82
112 113 1.001268 CTATCTAGTCCATGCGCGTGT 60.001 52.381 26.86 12.30 0.00 4.49
113 114 1.001268 ACTATCTAGTCCATGCGCGTG 60.001 52.381 22.83 22.83 0.00 5.34
114 115 1.001268 CACTATCTAGTCCATGCGCGT 60.001 52.381 8.43 0.00 33.46 6.01
115 116 1.667177 CCACTATCTAGTCCATGCGCG 60.667 57.143 0.00 0.00 33.46 6.86
116 117 1.937108 GCCACTATCTAGTCCATGCGC 60.937 57.143 0.00 0.00 33.46 6.09
117 118 1.615883 AGCCACTATCTAGTCCATGCG 59.384 52.381 0.00 0.00 33.46 4.73
118 119 2.366916 ACAGCCACTATCTAGTCCATGC 59.633 50.000 0.00 0.00 33.46 4.06
119 120 3.386078 ACACAGCCACTATCTAGTCCATG 59.614 47.826 0.00 0.00 33.46 3.66
120 121 3.386078 CACACAGCCACTATCTAGTCCAT 59.614 47.826 0.00 0.00 33.46 3.41
121 122 2.760650 CACACAGCCACTATCTAGTCCA 59.239 50.000 0.00 0.00 33.46 4.02
122 123 2.101582 CCACACAGCCACTATCTAGTCC 59.898 54.545 0.00 0.00 33.46 3.85
123 124 3.024547 TCCACACAGCCACTATCTAGTC 58.975 50.000 0.00 0.00 33.46 2.59
124 125 2.761208 GTCCACACAGCCACTATCTAGT 59.239 50.000 0.00 0.00 36.90 2.57
125 126 2.760650 TGTCCACACAGCCACTATCTAG 59.239 50.000 0.00 0.00 0.00 2.43
126 127 2.760650 CTGTCCACACAGCCACTATCTA 59.239 50.000 0.00 0.00 43.77 1.98
127 128 1.552337 CTGTCCACACAGCCACTATCT 59.448 52.381 0.00 0.00 43.77 1.98
128 129 2.015736 CTGTCCACACAGCCACTATC 57.984 55.000 0.00 0.00 43.77 2.08
137 138 3.713288 CGAACTAGTTTCTGTCCACACA 58.287 45.455 10.02 0.00 31.20 3.72
138 139 2.475487 GCGAACTAGTTTCTGTCCACAC 59.525 50.000 10.02 0.00 31.20 3.82
139 140 2.547218 GGCGAACTAGTTTCTGTCCACA 60.547 50.000 10.02 0.00 31.20 4.17
140 141 2.067013 GGCGAACTAGTTTCTGTCCAC 58.933 52.381 10.02 0.00 31.20 4.02
141 142 1.689813 TGGCGAACTAGTTTCTGTCCA 59.310 47.619 10.02 9.76 31.20 4.02
142 143 2.067013 GTGGCGAACTAGTTTCTGTCC 58.933 52.381 10.02 7.44 31.20 4.02
143 144 2.475487 GTGTGGCGAACTAGTTTCTGTC 59.525 50.000 10.02 5.42 31.20 3.51
144 145 2.159014 TGTGTGGCGAACTAGTTTCTGT 60.159 45.455 10.02 0.00 31.20 3.41
145 146 2.476619 CTGTGTGGCGAACTAGTTTCTG 59.523 50.000 10.02 4.45 31.20 3.02
146 147 2.755650 CTGTGTGGCGAACTAGTTTCT 58.244 47.619 10.02 0.00 31.20 2.52
147 148 1.194772 GCTGTGTGGCGAACTAGTTTC 59.805 52.381 10.02 5.00 0.00 2.78
148 149 1.226746 GCTGTGTGGCGAACTAGTTT 58.773 50.000 10.02 0.00 0.00 2.66
149 150 2.914379 GCTGTGTGGCGAACTAGTT 58.086 52.632 8.13 8.13 0.00 2.24
150 151 4.675404 GCTGTGTGGCGAACTAGT 57.325 55.556 0.00 0.00 0.00 2.57
174 175 4.980903 CACAGCACGCGGTTTGCC 62.981 66.667 15.58 0.00 41.18 4.52
175 176 4.980903 CCACAGCACGCGGTTTGC 62.981 66.667 12.47 12.10 40.52 3.68
176 177 4.326766 CCCACAGCACGCGGTTTG 62.327 66.667 12.47 7.81 0.00 2.93
186 187 3.064324 GTCCACATGCCCCACAGC 61.064 66.667 0.00 0.00 0.00 4.40
187 188 2.746412 TTCGTCCACATGCCCCACAG 62.746 60.000 0.00 0.00 0.00 3.66
188 189 2.823758 TTCGTCCACATGCCCCACA 61.824 57.895 0.00 0.00 0.00 4.17
189 190 2.033448 TTCGTCCACATGCCCCAC 59.967 61.111 0.00 0.00 0.00 4.61
190 191 2.033448 GTTCGTCCACATGCCCCA 59.967 61.111 0.00 0.00 0.00 4.96
191 192 1.745489 GAGTTCGTCCACATGCCCC 60.745 63.158 0.00 0.00 0.00 5.80
192 193 0.741221 GAGAGTTCGTCCACATGCCC 60.741 60.000 0.00 0.00 0.00 5.36
193 194 0.741221 GGAGAGTTCGTCCACATGCC 60.741 60.000 0.00 0.00 33.84 4.40
194 195 0.037326 TGGAGAGTTCGTCCACATGC 60.037 55.000 0.00 0.00 39.28 4.06
195 196 2.069273 GTTGGAGAGTTCGTCCACATG 58.931 52.381 0.00 0.00 44.06 3.21
196 197 1.336887 CGTTGGAGAGTTCGTCCACAT 60.337 52.381 0.00 0.00 44.06 3.21
197 198 0.031585 CGTTGGAGAGTTCGTCCACA 59.968 55.000 0.00 0.00 44.06 4.17
198 199 1.282930 GCGTTGGAGAGTTCGTCCAC 61.283 60.000 0.00 0.00 44.06 4.02
199 200 1.006571 GCGTTGGAGAGTTCGTCCA 60.007 57.895 0.00 0.00 42.62 4.02
200 201 1.737008 GGCGTTGGAGAGTTCGTCC 60.737 63.158 0.00 0.00 34.31 4.79
201 202 1.737008 GGGCGTTGGAGAGTTCGTC 60.737 63.158 0.00 0.00 0.00 4.20
202 203 2.342648 GGGCGTTGGAGAGTTCGT 59.657 61.111 0.00 0.00 0.00 3.85
203 204 2.027625 GTGGGCGTTGGAGAGTTCG 61.028 63.158 0.00 0.00 0.00 3.95
204 205 1.671379 GGTGGGCGTTGGAGAGTTC 60.671 63.158 0.00 0.00 0.00 3.01
205 206 2.430367 GGTGGGCGTTGGAGAGTT 59.570 61.111 0.00 0.00 0.00 3.01
206 207 3.637273 GGGTGGGCGTTGGAGAGT 61.637 66.667 0.00 0.00 0.00 3.24
207 208 4.760047 CGGGTGGGCGTTGGAGAG 62.760 72.222 0.00 0.00 0.00 3.20
216 217 4.856801 ATCATCGTGCGGGTGGGC 62.857 66.667 0.00 0.00 0.00 5.36
217 218 2.896854 CATCATCGTGCGGGTGGG 60.897 66.667 0.00 0.00 0.00 4.61
218 219 3.576356 GCATCATCGTGCGGGTGG 61.576 66.667 0.00 0.00 35.10 4.61
219 220 3.576356 GGCATCATCGTGCGGGTG 61.576 66.667 0.00 0.00 45.97 4.61
220 221 4.856801 GGGCATCATCGTGCGGGT 62.857 66.667 0.00 0.00 45.97 5.28
221 222 4.854924 TGGGCATCATCGTGCGGG 62.855 66.667 0.00 0.00 45.97 6.13
222 223 3.576356 GTGGGCATCATCGTGCGG 61.576 66.667 0.00 0.00 45.97 5.69
223 224 2.182181 ATGTGGGCATCATCGTGCG 61.182 57.895 0.00 0.00 45.97 5.34
224 225 1.357690 CATGTGGGCATCATCGTGC 59.642 57.895 0.00 0.00 44.31 5.34
225 226 2.027325 CCATGTGGGCATCATCGTG 58.973 57.895 0.00 0.00 31.99 4.35
226 227 4.565360 CCATGTGGGCATCATCGT 57.435 55.556 0.00 0.00 31.99 3.73
235 236 3.899052 AGAATTTGAATGCCATGTGGG 57.101 42.857 0.54 0.00 40.85 4.61
236 237 4.799949 CGTTAGAATTTGAATGCCATGTGG 59.200 41.667 0.00 0.00 38.53 4.17
237 238 4.799949 CCGTTAGAATTTGAATGCCATGTG 59.200 41.667 0.00 0.00 0.00 3.21
238 239 4.704540 TCCGTTAGAATTTGAATGCCATGT 59.295 37.500 0.00 0.00 0.00 3.21
239 240 5.247507 TCCGTTAGAATTTGAATGCCATG 57.752 39.130 0.00 0.00 0.00 3.66
240 241 6.469782 AATCCGTTAGAATTTGAATGCCAT 57.530 33.333 0.00 0.00 0.00 4.40
241 242 5.913137 AATCCGTTAGAATTTGAATGCCA 57.087 34.783 0.00 0.00 0.00 4.92
242 243 6.564328 AGAAATCCGTTAGAATTTGAATGCC 58.436 36.000 0.00 0.00 0.00 4.40
243 244 8.466086 AAAGAAATCCGTTAGAATTTGAATGC 57.534 30.769 0.00 0.00 0.00 3.56
246 247 9.509956 TCCTAAAGAAATCCGTTAGAATTTGAA 57.490 29.630 0.00 0.00 38.55 2.69
247 248 9.681062 ATCCTAAAGAAATCCGTTAGAATTTGA 57.319 29.630 0.00 0.00 38.55 2.69
250 251 8.827677 CGAATCCTAAAGAAATCCGTTAGAATT 58.172 33.333 0.00 0.00 38.55 2.17
251 252 7.985752 ACGAATCCTAAAGAAATCCGTTAGAAT 59.014 33.333 0.00 0.00 38.55 2.40
252 253 7.277098 CACGAATCCTAAAGAAATCCGTTAGAA 59.723 37.037 0.00 0.00 38.55 2.10
253 254 6.755141 CACGAATCCTAAAGAAATCCGTTAGA 59.245 38.462 0.00 0.00 38.55 2.10
254 255 6.534079 ACACGAATCCTAAAGAAATCCGTTAG 59.466 38.462 0.00 0.00 36.84 2.34
255 256 6.400568 ACACGAATCCTAAAGAAATCCGTTA 58.599 36.000 0.00 0.00 0.00 3.18
256 257 5.243207 ACACGAATCCTAAAGAAATCCGTT 58.757 37.500 0.00 0.00 0.00 4.44
257 258 4.828829 ACACGAATCCTAAAGAAATCCGT 58.171 39.130 0.00 0.00 0.00 4.69
258 259 6.897259 TTACACGAATCCTAAAGAAATCCG 57.103 37.500 0.00 0.00 0.00 4.18
259 260 8.508875 TGTTTTACACGAATCCTAAAGAAATCC 58.491 33.333 0.00 0.00 0.00 3.01
260 261 9.543018 CTGTTTTACACGAATCCTAAAGAAATC 57.457 33.333 0.00 0.00 0.00 2.17
261 262 9.280174 TCTGTTTTACACGAATCCTAAAGAAAT 57.720 29.630 0.00 0.00 0.00 2.17
262 263 8.665643 TCTGTTTTACACGAATCCTAAAGAAA 57.334 30.769 0.00 0.00 0.00 2.52
263 264 8.665643 TTCTGTTTTACACGAATCCTAAAGAA 57.334 30.769 0.00 0.00 0.00 2.52
264 265 8.842358 ATTCTGTTTTACACGAATCCTAAAGA 57.158 30.769 0.00 0.00 27.55 2.52
268 269 8.649841 CGTTAATTCTGTTTTACACGAATCCTA 58.350 33.333 0.00 0.00 30.42 2.94
269 270 7.515643 CGTTAATTCTGTTTTACACGAATCCT 58.484 34.615 0.00 0.00 30.42 3.24
270 271 6.247791 GCGTTAATTCTGTTTTACACGAATCC 59.752 38.462 0.00 0.00 30.42 3.01
271 272 6.793203 TGCGTTAATTCTGTTTTACACGAATC 59.207 34.615 0.00 0.00 30.42 2.52
272 273 6.660722 TGCGTTAATTCTGTTTTACACGAAT 58.339 32.000 0.00 0.00 31.84 3.34
273 274 6.018913 TCTGCGTTAATTCTGTTTTACACGAA 60.019 34.615 0.00 0.00 0.00 3.85
274 275 5.462729 TCTGCGTTAATTCTGTTTTACACGA 59.537 36.000 0.00 0.00 0.00 4.35
275 276 5.672051 TCTGCGTTAATTCTGTTTTACACG 58.328 37.500 0.00 0.00 0.00 4.49
276 277 9.601971 TTAATCTGCGTTAATTCTGTTTTACAC 57.398 29.630 0.00 0.00 0.00 2.90
279 280 9.337091 GCTTTAATCTGCGTTAATTCTGTTTTA 57.663 29.630 0.00 0.00 0.00 1.52
280 281 7.865385 TGCTTTAATCTGCGTTAATTCTGTTTT 59.135 29.630 0.00 0.00 0.00 2.43
281 282 7.367285 TGCTTTAATCTGCGTTAATTCTGTTT 58.633 30.769 0.00 0.00 0.00 2.83
282 283 6.908825 TGCTTTAATCTGCGTTAATTCTGTT 58.091 32.000 0.00 0.00 0.00 3.16
283 284 6.494893 TGCTTTAATCTGCGTTAATTCTGT 57.505 33.333 0.00 0.00 0.00 3.41
284 285 6.968904 ACATGCTTTAATCTGCGTTAATTCTG 59.031 34.615 0.00 0.00 0.00 3.02
285 286 6.968904 CACATGCTTTAATCTGCGTTAATTCT 59.031 34.615 0.00 0.00 0.00 2.40
286 287 6.197096 CCACATGCTTTAATCTGCGTTAATTC 59.803 38.462 0.00 0.00 0.00 2.17
287 288 6.035843 CCACATGCTTTAATCTGCGTTAATT 58.964 36.000 0.00 0.00 0.00 1.40
288 289 5.450412 CCCACATGCTTTAATCTGCGTTAAT 60.450 40.000 0.00 0.00 0.00 1.40
289 290 4.142491 CCCACATGCTTTAATCTGCGTTAA 60.142 41.667 0.00 0.00 0.00 2.01
290 291 3.376859 CCCACATGCTTTAATCTGCGTTA 59.623 43.478 0.00 0.00 0.00 3.18
291 292 2.164219 CCCACATGCTTTAATCTGCGTT 59.836 45.455 0.00 0.00 0.00 4.84
292 293 1.745087 CCCACATGCTTTAATCTGCGT 59.255 47.619 0.00 0.00 0.00 5.24
293 294 1.534595 GCCCACATGCTTTAATCTGCG 60.535 52.381 0.00 0.00 0.00 5.18
294 295 1.477700 TGCCCACATGCTTTAATCTGC 59.522 47.619 0.00 0.00 0.00 4.26
295 296 3.872511 TTGCCCACATGCTTTAATCTG 57.127 42.857 0.00 0.00 0.00 2.90
296 297 3.770933 ACATTGCCCACATGCTTTAATCT 59.229 39.130 0.00 0.00 0.00 2.40
297 298 3.866910 CACATTGCCCACATGCTTTAATC 59.133 43.478 0.00 0.00 0.00 1.75
298 299 3.864243 CACATTGCCCACATGCTTTAAT 58.136 40.909 0.00 0.00 0.00 1.40
299 300 2.612471 GCACATTGCCCACATGCTTTAA 60.612 45.455 0.00 0.00 37.42 1.52
300 301 1.067000 GCACATTGCCCACATGCTTTA 60.067 47.619 0.00 0.00 37.42 1.85
301 302 0.320946 GCACATTGCCCACATGCTTT 60.321 50.000 0.00 0.00 37.42 3.51
302 303 1.294138 GCACATTGCCCACATGCTT 59.706 52.632 0.00 0.00 37.42 3.91
303 304 1.473497 TTGCACATTGCCCACATGCT 61.473 50.000 0.00 0.00 44.23 3.79
304 305 0.603172 TTTGCACATTGCCCACATGC 60.603 50.000 0.00 0.00 44.23 4.06
305 306 1.149987 GTTTGCACATTGCCCACATG 58.850 50.000 0.00 0.00 44.23 3.21
306 307 0.757512 TGTTTGCACATTGCCCACAT 59.242 45.000 0.00 0.00 44.23 3.21
307 308 0.757512 ATGTTTGCACATTGCCCACA 59.242 45.000 0.00 0.00 41.16 4.17
308 309 1.149987 CATGTTTGCACATTGCCCAC 58.850 50.000 0.00 0.00 41.16 4.61
309 310 3.608760 CATGTTTGCACATTGCCCA 57.391 47.368 0.00 0.00 41.16 5.36
320 321 2.010286 CACACGTGCGGCATGTTTG 61.010 57.895 24.35 23.34 30.47 2.93
321 322 2.331098 CACACGTGCGGCATGTTT 59.669 55.556 24.35 16.28 30.47 2.83
322 323 3.659092 CCACACGTGCGGCATGTT 61.659 61.111 24.35 13.37 30.47 2.71
328 329 2.047151 GATAATGCCCACACGTGCGG 62.047 60.000 17.22 16.48 0.00 5.69
329 330 1.351707 GATAATGCCCACACGTGCG 59.648 57.895 17.22 5.90 0.00 5.34
330 331 1.024271 ATGATAATGCCCACACGTGC 58.976 50.000 17.22 1.22 0.00 5.34
331 332 3.437428 CAAATGATAATGCCCACACGTG 58.563 45.455 15.48 15.48 0.00 4.49
332 333 2.426738 CCAAATGATAATGCCCACACGT 59.573 45.455 0.00 0.00 0.00 4.49
333 334 2.223782 CCCAAATGATAATGCCCACACG 60.224 50.000 0.00 0.00 0.00 4.49
334 335 3.030291 TCCCAAATGATAATGCCCACAC 58.970 45.455 0.00 0.00 0.00 3.82
335 336 3.395054 TCCCAAATGATAATGCCCACA 57.605 42.857 0.00 0.00 0.00 4.17
336 337 3.642848 ACATCCCAAATGATAATGCCCAC 59.357 43.478 0.00 0.00 0.00 4.61
337 338 3.926198 ACATCCCAAATGATAATGCCCA 58.074 40.909 0.00 0.00 0.00 5.36
338 339 4.961438 AACATCCCAAATGATAATGCCC 57.039 40.909 0.00 0.00 0.00 5.36
339 340 7.388500 CCAATAAACATCCCAAATGATAATGCC 59.612 37.037 0.00 0.00 0.00 4.40
340 341 8.149647 TCCAATAAACATCCCAAATGATAATGC 58.850 33.333 0.00 0.00 0.00 3.56
341 342 9.480053 GTCCAATAAACATCCCAAATGATAATG 57.520 33.333 0.00 0.00 0.00 1.90
342 343 9.438163 AGTCCAATAAACATCCCAAATGATAAT 57.562 29.630 0.00 0.00 0.00 1.28
343 344 8.837099 AGTCCAATAAACATCCCAAATGATAA 57.163 30.769 0.00 0.00 0.00 1.75
344 345 8.837099 AAGTCCAATAAACATCCCAAATGATA 57.163 30.769 0.00 0.00 0.00 2.15
345 346 7.738437 AAGTCCAATAAACATCCCAAATGAT 57.262 32.000 0.00 0.00 0.00 2.45
346 347 7.552050 AAAGTCCAATAAACATCCCAAATGA 57.448 32.000 0.00 0.00 0.00 2.57
383 384 9.598517 CAATTTGGCCACTATTTTGTAACATAT 57.401 29.630 3.88 0.00 0.00 1.78
391 392 7.387397 ACACAATACAATTTGGCCACTATTTTG 59.613 33.333 3.88 12.10 0.00 2.44
407 408 8.514330 AAGTTTAGTGGAGAAACACAATACAA 57.486 30.769 0.00 0.00 43.72 2.41
410 411 8.410141 CCAAAAGTTTAGTGGAGAAACACAATA 58.590 33.333 0.61 0.00 43.72 1.90
429 430 8.589338 TGCAACACATATTTATAACCCAAAAGT 58.411 29.630 0.00 0.00 0.00 2.66
430 431 8.994429 TGCAACACATATTTATAACCCAAAAG 57.006 30.769 0.00 0.00 0.00 2.27
433 434 7.030165 CGTTGCAACACATATTTATAACCCAA 58.970 34.615 28.01 0.00 0.00 4.12
436 437 6.470877 CCACGTTGCAACACATATTTATAACC 59.529 38.462 28.01 0.00 0.00 2.85
448 449 4.794169 AGATAATTTCCACGTTGCAACAC 58.206 39.130 28.01 4.26 0.00 3.32
497 498 9.811995 AAGTTCCAAAAAGTTTAAATGTACCTC 57.188 29.630 0.00 0.00 0.00 3.85
526 527 0.887836 TGTAGCACCGTGTCTCGTCT 60.888 55.000 0.00 0.00 37.94 4.18
542 543 1.210234 CCAGTGTGAGGATGCCATGTA 59.790 52.381 0.00 0.00 0.00 2.29
572 588 3.985925 AGTTTACTCGGTTCAAGCGTAAG 59.014 43.478 9.15 2.39 40.41 2.34
618 634 9.478019 GATTCACTCACTTTACAAAATATCACG 57.522 33.333 0.00 0.00 0.00 4.35
713 729 6.538742 TGAAGGAACGGAAAAGAATATGCTAG 59.461 38.462 0.00 0.00 0.00 3.42
856 872 5.050295 GGAACGTTATGCTGTAGATTAAGGC 60.050 44.000 0.00 0.00 0.00 4.35
1245 1262 6.980397 AGCAAAAGTATTCAACAAGAACAAGG 59.020 34.615 0.00 0.00 39.49 3.61
1309 1339 7.246674 TGCAAGATCAAACTATCCGTATTTC 57.753 36.000 0.00 0.00 0.00 2.17
1347 1377 4.976116 GTCAAAATTAGCTCGCAAGTTTGT 59.024 37.500 16.09 0.00 40.19 2.83
1524 1554 6.825610 GGATACTCTCCAGTCTTCATTCATT 58.174 40.000 0.00 0.00 44.26 2.57
1644 1674 1.002544 ACTGAGGAGGCGAAAAAGGAG 59.997 52.381 0.00 0.00 0.00 3.69
1658 1688 4.452825 TCAGGAGTATCTCGTAACTGAGG 58.547 47.826 0.00 0.00 36.61 3.86
1668 1698 8.397575 TCATGTAACTGTATCAGGAGTATCTC 57.602 38.462 0.00 0.00 35.51 2.75
1702 1740 2.771372 TCCTACAGCAATGGACATAGCA 59.229 45.455 0.00 0.00 0.00 3.49
1741 1779 7.171630 TCTAGTAGAAAATCAAGGGAGTCAC 57.828 40.000 0.00 0.00 0.00 3.67
1760 1798 7.611855 ACCGAATTGGATTTTTGAGAATCTAGT 59.388 33.333 0.00 0.00 42.00 2.57
1767 1805 3.056891 GGCACCGAATTGGATTTTTGAGA 60.057 43.478 0.00 0.00 42.00 3.27
1768 1806 3.253230 GGCACCGAATTGGATTTTTGAG 58.747 45.455 0.00 0.00 42.00 3.02
1801 1839 0.741915 TTTTTGTTCTGACCGGGTGC 59.258 50.000 3.30 0.00 0.00 5.01
1842 5647 9.352784 CAATTTTCTATCACGCAAAAGGAAATA 57.647 29.630 0.00 0.00 29.07 1.40
1844 5649 7.206687 ACAATTTTCTATCACGCAAAAGGAAA 58.793 30.769 0.00 0.00 0.00 3.13
1848 5653 7.220683 CCCATACAATTTTCTATCACGCAAAAG 59.779 37.037 0.00 0.00 0.00 2.27
1854 5660 6.017934 CCTCACCCATACAATTTTCTATCACG 60.018 42.308 0.00 0.00 0.00 4.35
1863 5669 2.752903 GCGAACCTCACCCATACAATTT 59.247 45.455 0.00 0.00 0.00 1.82
1873 5679 1.534729 AATTTGGAGCGAACCTCACC 58.465 50.000 0.00 0.00 42.62 4.02
1894 5700 5.586243 GCTGCTCAGATGTCCAAATAAGTTA 59.414 40.000 0.29 0.00 0.00 2.24
1897 5703 4.197750 AGCTGCTCAGATGTCCAAATAAG 58.802 43.478 0.00 0.00 0.00 1.73
1905 5711 2.159128 TGCTAAGAGCTGCTCAGATGTC 60.159 50.000 29.49 14.14 42.97 3.06
1944 5750 3.525537 ACTGTTCACACACTGTTCTGAG 58.474 45.455 0.00 0.00 0.00 3.35
1946 5752 5.351465 AGTTTACTGTTCACACACTGTTCTG 59.649 40.000 0.00 0.00 31.81 3.02
2029 5835 0.598065 AGGTGCGCTCCAAATTTCAC 59.402 50.000 28.68 4.94 0.00 3.18
2120 5926 3.835978 TCATCTTCACCCCTCTAACGAAA 59.164 43.478 0.00 0.00 0.00 3.46
2123 5929 2.482142 GCTCATCTTCACCCCTCTAACG 60.482 54.545 0.00 0.00 0.00 3.18
2124 5930 2.769095 AGCTCATCTTCACCCCTCTAAC 59.231 50.000 0.00 0.00 0.00 2.34
2125 5931 3.034635 GAGCTCATCTTCACCCCTCTAA 58.965 50.000 9.40 0.00 0.00 2.10
2127 5933 1.494960 GAGCTCATCTTCACCCCTCT 58.505 55.000 9.40 0.00 0.00 3.69
2128 5934 0.103937 CGAGCTCATCTTCACCCCTC 59.896 60.000 15.40 0.00 0.00 4.30
2129 5935 1.333636 CCGAGCTCATCTTCACCCCT 61.334 60.000 15.40 0.00 0.00 4.79
2130 5936 1.144936 CCGAGCTCATCTTCACCCC 59.855 63.158 15.40 0.00 0.00 4.95
2162 5970 0.252881 AGCTGGGAGGGAATGAGTGA 60.253 55.000 0.00 0.00 0.00 3.41
2169 5977 2.260822 GCAGATATAGCTGGGAGGGAA 58.739 52.381 19.11 0.00 36.41 3.97
2170 5978 1.149923 TGCAGATATAGCTGGGAGGGA 59.850 52.381 19.11 0.00 36.41 4.20
2171 5979 1.277557 GTGCAGATATAGCTGGGAGGG 59.722 57.143 19.11 0.00 36.41 4.30
2172 5980 2.233431 GAGTGCAGATATAGCTGGGAGG 59.767 54.545 19.11 0.00 36.41 4.30
2173 5981 2.233431 GGAGTGCAGATATAGCTGGGAG 59.767 54.545 19.11 0.00 36.41 4.30
2194 6002 7.919690 AGTATTACATTGAACATGGATTCACG 58.080 34.615 0.00 0.00 38.31 4.35
2216 6024 9.128404 CGCCAAATAGGTATATGAGGTATAGTA 57.872 37.037 0.00 0.00 40.61 1.82
2217 6025 7.069578 CCGCCAAATAGGTATATGAGGTATAGT 59.930 40.741 0.00 0.00 40.61 2.12
2218 6026 7.069578 ACCGCCAAATAGGTATATGAGGTATAG 59.930 40.741 0.00 0.00 39.30 1.31
2219 6027 6.899075 ACCGCCAAATAGGTATATGAGGTATA 59.101 38.462 0.00 0.00 39.30 1.47
2349 6157 1.202302 GCTTTAAGGCTTTGCGATCCC 60.202 52.381 4.45 0.00 0.00 3.85
2355 6163 2.297315 AGGTTCAGCTTTAAGGCTTTGC 59.703 45.455 9.73 8.23 41.00 3.68
2544 6353 6.036470 GGGAAATAAGTTAGATGCTGCAAAC 58.964 40.000 6.36 7.02 0.00 2.93
2559 6368 2.972625 TCGTCTGCACAGGGAAATAAG 58.027 47.619 0.00 0.00 0.00 1.73
2657 6466 4.796231 CGGAGCAGCGTACGCCTT 62.796 66.667 34.88 21.24 43.17 4.35
2695 6504 1.544825 CCACCCGGAAGCTCTCAAGA 61.545 60.000 0.73 0.00 0.00 3.02
2698 6507 3.003173 CCCACCCGGAAGCTCTCA 61.003 66.667 0.73 0.00 0.00 3.27
3538 7355 2.825836 CCATTCCAGCCCGCTGAC 60.826 66.667 18.19 0.00 46.30 3.51
3555 7374 0.314578 CGACGTGCAATTCGATGAGC 60.315 55.000 11.85 0.00 37.43 4.26
3556 7375 0.992072 ACGACGTGCAATTCGATGAG 59.008 50.000 21.56 4.47 38.63 2.90
3567 7386 0.874607 AGAACAAGGACACGACGTGC 60.875 55.000 27.11 18.78 36.98 5.34
3596 7415 1.618343 GTAAAAACCAGCCACTGCCAT 59.382 47.619 0.00 0.00 38.69 4.40
3621 7448 3.187227 CGAACTCCAACATCAACCTCAAG 59.813 47.826 0.00 0.00 0.00 3.02
3627 7454 3.064207 TGTAGCGAACTCCAACATCAAC 58.936 45.455 0.00 0.00 0.00 3.18
3646 7476 4.505922 CGTTGCAAAATACACCAAACATGT 59.494 37.500 0.00 0.00 0.00 3.21
3805 7825 7.359014 GGCGGATAGATAAGTTGTTCGATTTAC 60.359 40.741 0.00 0.00 0.00 2.01
3817 7837 1.874345 CGGCGGGCGGATAGATAAGT 61.874 60.000 16.95 0.00 0.00 2.24
3819 7839 1.592400 CTCGGCGGGCGGATAGATAA 61.592 60.000 24.00 0.62 0.00 1.75
3821 7841 3.374402 CTCGGCGGGCGGATAGAT 61.374 66.667 24.00 0.00 0.00 1.98
3846 7866 1.599047 CAGTTGGATGGTCGGCTCT 59.401 57.895 0.00 0.00 0.00 4.09
3849 7869 0.463654 TATGCAGTTGGATGGTCGGC 60.464 55.000 0.00 0.00 0.00 5.54
3863 7883 5.765576 TTACCCAGACTTTTAGGTATGCA 57.234 39.130 0.00 0.00 34.89 3.96
3905 7931 4.849329 GCGCTACGTGACCGGGAG 62.849 72.222 6.32 0.00 38.78 4.30
3920 7946 4.316930 CGATGATATATCATTGAGCGTGCG 60.317 45.833 28.64 20.06 46.87 5.34
3935 10775 6.662865 AAGTCTCTCAACCATCGATGATAT 57.337 37.500 26.86 8.88 0.00 1.63
3938 10778 4.808414 AAAGTCTCTCAACCATCGATGA 57.192 40.909 26.86 6.62 0.00 2.92
3983 10827 3.039011 ACATTTAGAGCCCTACACCGAT 58.961 45.455 0.00 0.00 0.00 4.18
3986 10830 4.156008 CACAAACATTTAGAGCCCTACACC 59.844 45.833 0.00 0.00 0.00 4.16
3988 10832 3.756434 GCACAAACATTTAGAGCCCTACA 59.244 43.478 0.00 0.00 0.00 2.74
4004 10848 9.941325 ATTTATATTTGGTTTCATGAGCACAAA 57.059 25.926 17.36 17.36 33.11 2.83
4026 10870 5.992217 GTGTAACATTTTGGGCCAACATTTA 59.008 36.000 20.79 15.03 36.32 1.40
4027 10871 4.819088 GTGTAACATTTTGGGCCAACATTT 59.181 37.500 20.79 15.93 36.32 2.32
4049 11816 5.687166 TCTATGTCACGGATTAAAAGGGT 57.313 39.130 0.00 0.00 0.00 4.34
4058 11825 4.327680 TCGATCAGATCTATGTCACGGAT 58.672 43.478 8.82 0.00 0.00 4.18
4065 11832 7.148154 GGTTACTAGCATCGATCAGATCTATGT 60.148 40.741 20.63 12.74 37.52 2.29
4088 11855 9.162764 GAGTTGTTATGTGATACATAGTTGGTT 57.837 33.333 2.37 0.00 41.56 3.67
4095 11862 9.764363 GAAGGATGAGTTGTTATGTGATACATA 57.236 33.333 0.00 0.00 39.88 2.29
4106 11873 5.209818 ACACGAAGAAGGATGAGTTGTTA 57.790 39.130 0.00 0.00 0.00 2.41
4143 11910 7.450074 TCTGCTGGTTCAAATAAGAAGAGTAA 58.550 34.615 0.00 0.00 0.00 2.24
4161 11928 1.804151 TCCGAACGAATTTTCTGCTGG 59.196 47.619 0.00 0.00 0.00 4.85
4168 11935 3.124636 CGACCTTGATCCGAACGAATTTT 59.875 43.478 0.00 0.00 0.00 1.82
4177 11944 1.798735 GACGACGACCTTGATCCGA 59.201 57.895 0.00 0.00 0.00 4.55
4178 11945 1.582937 CGACGACGACCTTGATCCG 60.583 63.158 0.00 0.00 42.66 4.18
4212 11979 0.546122 TTGTATACCAGCCAGCAGGG 59.454 55.000 6.01 2.56 40.85 4.45
4217 11984 2.290641 GCCGAATTTGTATACCAGCCAG 59.709 50.000 0.00 0.00 0.00 4.85
4222 11989 4.039973 CCCTAGAGCCGAATTTGTATACCA 59.960 45.833 0.00 0.00 0.00 3.25
4230 11997 2.434702 CCTACACCCTAGAGCCGAATTT 59.565 50.000 0.00 0.00 0.00 1.82
4275 12042 1.064003 AGGCACATACACCCAGTCAA 58.936 50.000 0.00 0.00 0.00 3.18
4276 12043 0.324614 CAGGCACATACACCCAGTCA 59.675 55.000 0.00 0.00 0.00 3.41
4298 12065 0.524392 GATGACTCAGAGTCCACGCG 60.524 60.000 25.11 3.53 44.44 6.01
4341 12108 1.629861 TGATCCATGACAGAGGTGCAA 59.370 47.619 0.00 0.00 0.00 4.08
4345 12112 3.650948 TGAGATGATCCATGACAGAGGT 58.349 45.455 0.00 0.00 0.00 3.85
4386 12153 2.434134 GGCGAGTCAGCGTACAACG 61.434 63.158 0.00 0.00 45.88 4.10
4389 12156 2.566529 CAGGCGAGTCAGCGTACA 59.433 61.111 0.00 0.00 38.18 2.90
4396 12163 2.525629 TCCCAACCAGGCGAGTCA 60.526 61.111 0.00 0.00 35.39 3.41
4411 12178 2.550978 CATCTGTTCACCGGTATGTCC 58.449 52.381 6.87 0.00 0.00 4.02
4443 12210 0.036765 GGACGTATGGTGTGGAGCAA 60.037 55.000 0.00 0.00 32.09 3.91
4493 12260 0.960364 GGTGCCGCTCATTTTCTCCA 60.960 55.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.