Multiple sequence alignment - TraesCS7B01G156700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G156700 chr7B 100.000 7509 0 0 480 7988 211797736 211790228 0.000000e+00 13867.0
1 TraesCS7B01G156700 chr7B 100.000 159 0 0 1 159 211798215 211798057 2.180000e-75 294.0
2 TraesCS7B01G156700 chr7B 83.158 95 12 4 5919 6011 680523229 680523321 5.140000e-12 84.2
3 TraesCS7B01G156700 chr7B 100.000 30 0 0 3849 3878 48884996 48885025 1.000000e-03 56.5
4 TraesCS7B01G156700 chr7D 94.802 3290 112 24 1629 4883 235578114 235574849 0.000000e+00 5073.0
5 TraesCS7B01G156700 chr7D 92.842 1425 36 23 6168 7579 235573256 235571885 0.000000e+00 2006.0
6 TraesCS7B01G156700 chr7D 95.622 1165 36 8 480 1632 235579513 235578352 0.000000e+00 1855.0
7 TraesCS7B01G156700 chr7D 94.889 1174 49 5 4956 6126 235574607 235573442 0.000000e+00 1825.0
8 TraesCS7B01G156700 chr7D 94.444 234 12 1 7755 7988 235571397 235571165 7.620000e-95 359.0
9 TraesCS7B01G156700 chr7D 96.855 159 5 0 1 159 235579783 235579625 4.750000e-67 267.0
10 TraesCS7B01G156700 chr7D 85.714 126 16 2 5982 6106 198018962 198019086 1.810000e-26 132.0
11 TraesCS7B01G156700 chr7A 92.155 2613 109 31 4956 7563 250682338 250679817 0.000000e+00 3602.0
12 TraesCS7B01G156700 chr7A 95.397 1673 46 14 2032 3683 250689797 250688135 0.000000e+00 2634.0
13 TraesCS7B01G156700 chr7A 94.879 703 35 1 4176 4877 250683237 250682535 0.000000e+00 1098.0
14 TraesCS7B01G156700 chr7A 96.085 281 11 0 3682 3962 250688011 250687731 7.310000e-125 459.0
15 TraesCS7B01G156700 chr7A 94.860 214 8 1 3970 4183 250684126 250683916 1.660000e-86 331.0
16 TraesCS7B01G156700 chr7A 92.275 233 15 3 7757 7988 250679400 250679170 2.150000e-85 327.0
17 TraesCS7B01G156700 chr7A 95.918 98 3 1 2709 2805 82204212 82204115 2.980000e-34 158.0
18 TraesCS7B01G156700 chr7A 86.667 120 16 0 7530 7649 581843906 581844025 5.030000e-27 134.0
19 TraesCS7B01G156700 chr7A 84.211 133 16 4 5988 6118 701300719 701300848 3.030000e-24 124.0
20 TraesCS7B01G156700 chr7A 85.000 100 15 0 5918 6017 477232462 477232561 1.420000e-17 102.0
21 TraesCS7B01G156700 chr7A 84.211 95 11 4 5919 6011 693184139 693184231 1.100000e-13 89.8
22 TraesCS7B01G156700 chr4B 93.660 694 36 2 944 1629 356437694 356438387 0.000000e+00 1031.0
23 TraesCS7B01G156700 chr4B 96.809 94 3 0 1678 1771 356438377 356438470 2.980000e-34 158.0
24 TraesCS7B01G156700 chr4B 91.089 101 8 1 7550 7649 188648747 188648647 1.400000e-27 135.0
25 TraesCS7B01G156700 chr5D 82.423 421 49 15 1026 1427 119762396 119762810 2.130000e-90 344.0
26 TraesCS7B01G156700 chr5D 85.366 246 34 2 2827 3072 119763711 119763954 3.700000e-63 254.0
27 TraesCS7B01G156700 chr5D 79.151 259 43 6 3319 3571 119764113 119764366 1.380000e-37 169.0
28 TraesCS7B01G156700 chr5D 93.684 95 6 0 2709 2803 533662934 533662840 8.360000e-30 143.0
29 TraesCS7B01G156700 chr5D 88.000 100 10 2 5338 5436 119764866 119764964 5.060000e-22 117.0
30 TraesCS7B01G156700 chr5A 82.567 413 49 17 1026 1422 130127322 130127727 7.680000e-90 342.0
31 TraesCS7B01G156700 chr5A 85.772 246 33 2 2827 3072 130128793 130129036 7.950000e-65 259.0
32 TraesCS7B01G156700 chr5A 89.051 137 14 1 6013 6148 368554717 368554853 1.380000e-37 169.0
33 TraesCS7B01G156700 chr5A 89.916 119 11 1 6022 6139 396688804 396688686 1.390000e-32 152.0
34 TraesCS7B01G156700 chr5A 79.358 218 37 6 3319 3531 130129207 130129421 6.460000e-31 147.0
35 TraesCS7B01G156700 chr5A 87.603 121 10 5 7531 7649 670399127 670399244 1.400000e-27 135.0
36 TraesCS7B01G156700 chr5A 88.000 100 10 2 5338 5436 130133083 130133181 5.060000e-22 117.0
37 TraesCS7B01G156700 chr5B 81.796 412 48 17 1026 1422 133006166 133006565 3.600000e-83 320.0
38 TraesCS7B01G156700 chr5B 85.537 242 33 2 2827 3068 133007475 133007714 1.330000e-62 252.0
39 TraesCS7B01G156700 chr5B 78.599 257 46 7 3320 3571 133007890 133008142 2.310000e-35 161.0
40 TraesCS7B01G156700 chr5B 94.737 95 5 0 2709 2803 673768000 673767906 1.800000e-31 148.0
41 TraesCS7B01G156700 chr5B 91.589 107 7 2 7545 7649 577516233 577516127 6.460000e-31 147.0
42 TraesCS7B01G156700 chr5B 88.000 100 10 2 5338 5436 133008825 133008923 5.060000e-22 117.0
43 TraesCS7B01G156700 chr5B 89.706 68 7 0 4957 5024 54715652 54715585 3.970000e-13 87.9
44 TraesCS7B01G156700 chr5B 100.000 28 0 0 3183 3210 653701288 653701261 1.400000e-02 52.8
45 TraesCS7B01G156700 chr2D 89.630 135 13 1 6013 6146 180881049 180881183 3.830000e-38 171.0
46 TraesCS7B01G156700 chr2D 91.837 98 8 0 2708 2805 99733238 99733141 3.890000e-28 137.0
47 TraesCS7B01G156700 chr2D 92.632 95 7 0 2709 2803 420169393 420169487 3.890000e-28 137.0
48 TraesCS7B01G156700 chr2D 92.473 93 7 0 2709 2801 473091639 473091547 5.030000e-27 134.0
49 TraesCS7B01G156700 chr2D 87.755 98 12 0 5919 6016 398064152 398064055 1.820000e-21 115.0
50 TraesCS7B01G156700 chr2D 89.655 58 5 1 4968 5024 423866783 423866726 1.110000e-08 73.1
51 TraesCS7B01G156700 chr2D 96.970 33 1 0 3846 3878 610471231 610471263 1.000000e-03 56.5
52 TraesCS7B01G156700 chr2D 96.970 33 1 0 3846 3878 610493894 610493926 1.000000e-03 56.5
53 TraesCS7B01G156700 chr6D 89.552 134 13 1 6013 6145 429842103 429842236 1.380000e-37 169.0
54 TraesCS7B01G156700 chr6D 92.079 101 7 1 7549 7649 406391535 406391436 3.010000e-29 141.0
55 TraesCS7B01G156700 chr6D 88.060 67 5 3 4959 5024 163443482 163443546 8.600000e-10 76.8
56 TraesCS7B01G156700 chr6D 76.974 152 22 12 4962 5105 245296085 245295939 3.090000e-09 75.0
57 TraesCS7B01G156700 chr6D 87.302 63 6 1 4962 5024 209216856 209216796 4.000000e-08 71.3
58 TraesCS7B01G156700 chr2A 88.889 135 14 1 6013 6146 195313156 195313290 1.780000e-36 165.0
59 TraesCS7B01G156700 chr2A 87.755 98 12 0 5919 6016 535152545 535152448 1.820000e-21 115.0
60 TraesCS7B01G156700 chr2A 100.000 31 0 0 3849 3879 539304768 539304738 3.110000e-04 58.4
61 TraesCS7B01G156700 chr3D 84.906 159 24 0 1 159 278515991 278515833 2.310000e-35 161.0
62 TraesCS7B01G156700 chr3D 82.759 174 26 4 494 665 104138163 104137992 1.390000e-32 152.0
63 TraesCS7B01G156700 chr3D 93.878 98 6 0 7552 7649 7607384 7607481 1.800000e-31 148.0
64 TraesCS7B01G156700 chr3D 92.079 101 8 0 2707 2807 445019036 445019136 8.360000e-30 143.0
65 TraesCS7B01G156700 chr6A 87.313 134 16 1 6013 6145 263886884 263887017 1.390000e-32 152.0
66 TraesCS7B01G156700 chr6A 86.614 127 9 7 7529 7649 60016911 60016787 5.030000e-27 134.0
67 TraesCS7B01G156700 chr1D 88.095 126 15 0 7524 7649 365727367 365727242 4.990000e-32 150.0
68 TraesCS7B01G156700 chr1D 95.652 92 4 0 7558 7649 11354612 11354703 1.800000e-31 148.0
69 TraesCS7B01G156700 chr1D 100.000 29 0 0 3849 3877 246038543 246038515 4.000000e-03 54.7
70 TraesCS7B01G156700 chr1A 86.131 137 17 2 6013 6148 555641126 555641261 6.460000e-31 147.0
71 TraesCS7B01G156700 chr1A 100.000 33 0 0 5209 5241 117949231 117949199 2.410000e-05 62.1
72 TraesCS7B01G156700 chr1A 100.000 30 0 0 3849 3878 63861142 63861113 1.000000e-03 56.5
73 TraesCS7B01G156700 chr1A 100.000 29 0 0 3849 3877 23019029 23019001 4.000000e-03 54.7
74 TraesCS7B01G156700 chr2B 81.013 158 18 11 4958 5106 518046550 518046396 1.820000e-21 115.0
75 TraesCS7B01G156700 chr1B 87.097 93 10 1 6902 6992 580524934 580524842 3.940000e-18 104.0
76 TraesCS7B01G156700 chr4D 84.848 99 13 2 5918 6015 500440032 500440129 1.830000e-16 99.0
77 TraesCS7B01G156700 chr4A 88.235 68 8 0 4957 5024 579425565 579425632 1.850000e-11 82.4
78 TraesCS7B01G156700 chr3A 81.818 99 13 4 5917 6014 416594327 416594233 2.390000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G156700 chr7B 211790228 211798215 7987 True 7080.50 13867 100.000000 1 7988 2 chr7B.!!$R1 7987
1 TraesCS7B01G156700 chr7D 235571165 235579783 8618 True 1897.50 5073 94.909000 1 7988 6 chr7D.!!$R1 7987
2 TraesCS7B01G156700 chr7A 250679170 250689797 10627 True 1408.50 3602 94.275167 2032 7988 6 chr7A.!!$R2 5956
3 TraesCS7B01G156700 chr4B 356437694 356438470 776 False 594.50 1031 95.234500 944 1771 2 chr4B.!!$F1 827
4 TraesCS7B01G156700 chr5D 119762396 119764964 2568 False 221.00 344 83.735000 1026 5436 4 chr5D.!!$F1 4410
5 TraesCS7B01G156700 chr5A 130127322 130133181 5859 False 216.25 342 83.924250 1026 5436 4 chr5A.!!$F3 4410
6 TraesCS7B01G156700 chr5B 133006166 133008923 2757 False 212.50 320 83.483000 1026 5436 4 chr5B.!!$F1 4410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 852 0.613260 AACGTCCAAGCCTGATAGCA 59.387 50.000 0.00 0.0 34.23 3.49 F
1803 2113 0.034089 GCATAACAGAAGGGGGCACT 60.034 55.000 0.00 0.0 0.00 4.40 F
1831 2141 0.456221 ATAGTCTGCTTCGGTGGTCG 59.544 55.000 0.00 0.0 40.90 4.79 F
1902 2233 1.525077 TGCGTGGGTGTGTTTCCTC 60.525 57.895 0.00 0.0 0.00 3.71 F
3181 3752 0.685097 AGTTCTGTTGGCGGCTTCTA 59.315 50.000 11.43 0.0 0.00 2.10 F
4504 12838 0.179000 CGGAGGGAGTAGCTTGCAAT 59.821 55.000 0.00 0.0 0.00 3.56 F
4665 12999 0.381801 CCGCCTATGGTCATTGTTGC 59.618 55.000 0.00 0.0 0.00 4.17 F
5878 14388 0.962356 AATCTGCAGTTGGGAAGCGG 60.962 55.000 14.67 0.0 36.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 2140 0.101759 TCTATTTCGAACCGAGGGCG 59.898 55.000 0.00 0.0 37.14 6.13 R
3155 3726 0.886490 CGCCAACAGAACTGAGCCTT 60.886 55.000 8.87 0.0 0.00 4.35 R
3181 3752 1.857583 GGGGAGGGGGTAGCTTATTTT 59.142 52.381 0.00 0.0 0.00 1.82 R
3857 4560 2.124903 CACTAGCTAAATACCCGTGCG 58.875 52.381 0.00 0.0 0.00 5.34 R
4687 13021 0.179119 GCCTACGTCCTGTGCGTATT 60.179 55.000 0.00 0.0 42.73 1.89 R
5510 14020 0.606401 TGGCTCAAGCTAGCAACCAC 60.606 55.000 18.83 2.9 44.64 4.16 R
6155 14826 2.099921 CACTAGCAGGCTGTCTAATCGT 59.900 50.000 17.16 9.3 0.00 3.73 R
7711 16398 0.187361 CCTCCCTCCCTCTCGAGATT 59.813 60.000 17.03 0.0 30.97 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.499338 TCACTGACATTTTCATTGGCCT 58.501 40.909 3.32 0.00 35.93 5.19
90 91 3.268023 ACGGACTTGAGGATTTGGATC 57.732 47.619 0.00 0.00 0.00 3.36
155 156 2.335712 CCCAACCTCGCTGAAAGGC 61.336 63.158 0.00 0.00 37.42 4.35
503 504 4.577246 TTTTTGCCGTGGCCGCAC 62.577 61.111 18.18 8.32 41.09 5.34
516 518 2.747855 CGCACCCTTTCCTCCTGC 60.748 66.667 0.00 0.00 0.00 4.85
519 521 0.962855 GCACCCTTTCCTCCTGCTTC 60.963 60.000 0.00 0.00 0.00 3.86
531 533 4.113815 TGCTTCCCCCGCCATCAG 62.114 66.667 0.00 0.00 0.00 2.90
546 548 1.830587 ATCAGCACCGCTCCAAGACA 61.831 55.000 0.00 0.00 36.40 3.41
555 557 1.611673 CGCTCCAAGACAGGGAAACAT 60.612 52.381 0.00 0.00 33.11 2.71
575 577 2.637383 GCCTCGTCGACCTTGGTCT 61.637 63.158 16.60 0.00 0.00 3.85
630 632 4.729918 CCAGCCACCCAGGTGCTC 62.730 72.222 11.52 5.37 44.16 4.26
640 642 1.550130 CCAGGTGCTCCGAAACCCTA 61.550 60.000 0.00 0.00 37.13 3.53
649 651 1.684983 TCCGAAACCCTAATCCTAGCG 59.315 52.381 0.00 0.00 0.00 4.26
651 653 2.470821 CGAAACCCTAATCCTAGCGTG 58.529 52.381 0.00 0.00 0.00 5.34
686 695 2.400399 CCTTAGCGTTTCGTGACTTGA 58.600 47.619 0.00 0.00 0.00 3.02
717 726 2.740826 CAATCACGCCCGGTTCGT 60.741 61.111 12.45 12.45 41.28 3.85
732 741 4.690748 CCGGTTCGTATCCTATAAGTACGA 59.309 45.833 0.00 3.08 45.69 3.43
773 782 3.818295 ATACAAGCCACCCCTTAACAA 57.182 42.857 0.00 0.00 0.00 2.83
778 787 3.322191 AGCCACCCCTTAACAAAAGAA 57.678 42.857 0.00 0.00 0.00 2.52
785 794 4.770531 ACCCCTTAACAAAAGAAGGTATGC 59.229 41.667 0.00 0.00 40.66 3.14
788 797 5.390613 CCTTAACAAAAGAAGGTATGCACG 58.609 41.667 0.00 0.00 37.94 5.34
841 852 0.613260 AACGTCCAAGCCTGATAGCA 59.387 50.000 0.00 0.00 34.23 3.49
1007 1019 3.849951 CCCGCTGCCTATGACGGT 61.850 66.667 0.00 0.00 44.14 4.83
1464 1506 4.320057 CCTCTTTGTTGATTCACTGTGCTC 60.320 45.833 2.12 3.27 0.00 4.26
1632 1701 1.210478 TCTTCCTTCATGCCTGTAGCC 59.790 52.381 0.00 0.00 42.71 3.93
1772 2082 5.013183 AGCTTAAGTAACTTCACATCCCACT 59.987 40.000 4.02 0.00 0.00 4.00
1781 2091 5.248640 ACTTCACATCCCACTCATACAAAG 58.751 41.667 0.00 0.00 0.00 2.77
1799 2109 3.933861 AAGTAGCATAACAGAAGGGGG 57.066 47.619 0.00 0.00 0.00 5.40
1803 2113 0.034089 GCATAACAGAAGGGGGCACT 60.034 55.000 0.00 0.00 0.00 4.40
1804 2114 1.755179 CATAACAGAAGGGGGCACTG 58.245 55.000 0.00 0.00 37.62 3.66
1830 2140 1.476891 TCATAGTCTGCTTCGGTGGTC 59.523 52.381 0.00 0.00 0.00 4.02
1831 2141 0.456221 ATAGTCTGCTTCGGTGGTCG 59.544 55.000 0.00 0.00 40.90 4.79
1832 2142 2.209064 TAGTCTGCTTCGGTGGTCGC 62.209 60.000 0.00 0.00 39.05 5.19
1863 2194 9.717892 GGTTCGAAATAGAGGTTATTTTTCATC 57.282 33.333 0.00 0.00 0.00 2.92
1869 2200 5.567138 AGAGGTTATTTTTCATCTTGGCG 57.433 39.130 0.00 0.00 0.00 5.69
1870 2201 4.399303 AGAGGTTATTTTTCATCTTGGCGG 59.601 41.667 0.00 0.00 0.00 6.13
1894 2225 4.250305 GTCTGGGTGCGTGGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
1900 2231 2.719354 GTGCGTGGGTGTGTTTCC 59.281 61.111 0.00 0.00 0.00 3.13
1902 2233 1.525077 TGCGTGGGTGTGTTTCCTC 60.525 57.895 0.00 0.00 0.00 3.71
1907 2238 2.036733 CGTGGGTGTGTTTCCTCTTCTA 59.963 50.000 0.00 0.00 0.00 2.10
1932 2263 2.369860 TCTGGATCTGTGCTTGAGTTGT 59.630 45.455 0.00 0.00 0.00 3.32
1938 2269 6.072508 TGGATCTGTGCTTGAGTTGTTTTATC 60.073 38.462 0.00 0.00 0.00 1.75
1949 2280 3.763897 AGTTGTTTTATCTGTCCATGGGC 59.236 43.478 10.20 10.20 0.00 5.36
1951 2282 3.355378 TGTTTTATCTGTCCATGGGCAG 58.645 45.455 36.05 36.05 0.00 4.85
1958 2289 2.237143 TCTGTCCATGGGCAGTTAAGAG 59.763 50.000 38.43 18.28 34.57 2.85
1976 2307 7.807907 AGTTAAGAGTTTTATGTGAATTTGGCG 59.192 33.333 0.00 0.00 0.00 5.69
2011 2345 4.122046 GGAACAATAATGAGGCCATTTGC 58.878 43.478 5.01 0.00 42.56 3.68
2142 2489 2.899256 ACACTACAGCCCAAAATGCATT 59.101 40.909 5.99 5.99 0.00 3.56
2149 2496 4.342092 ACAGCCCAAAATGCATTCTATACC 59.658 41.667 13.38 0.41 0.00 2.73
2173 2520 5.337652 CCCCTAGCCTTTATGTAGCATCTAC 60.338 48.000 0.00 0.00 0.00 2.59
2176 2523 4.621991 AGCCTTTATGTAGCATCTACACG 58.378 43.478 8.65 0.00 0.00 4.49
2184 2531 8.624701 TTATGTAGCATCTACACGAACTAAAC 57.375 34.615 8.65 0.00 0.00 2.01
2186 2533 4.430137 AGCATCTACACGAACTAAACGA 57.570 40.909 0.00 0.00 34.70 3.85
2260 2616 4.741321 ACCATGGGCAATGTTGATTAAG 57.259 40.909 18.09 0.00 34.11 1.85
2415 2771 4.357142 CAAAAGACATCATAGCATGTGGC 58.643 43.478 0.00 0.00 37.11 5.01
2572 2944 2.159787 GCAAGTGAGTATGCTGTTCGTG 60.160 50.000 0.00 0.00 39.46 4.35
2573 2945 3.059884 CAAGTGAGTATGCTGTTCGTGT 58.940 45.455 0.00 0.00 0.00 4.49
2704 3189 4.023622 GCCTCTTCAGTTGAAAAGGAGAAC 60.024 45.833 16.50 0.00 43.33 3.01
2707 3192 4.809426 TCTTCAGTTGAAAAGGAGAACGTC 59.191 41.667 0.00 0.00 33.07 4.34
3111 3596 3.194755 GGATGTCTTTACCCCGCAAAAAT 59.805 43.478 0.00 0.00 0.00 1.82
3112 3597 4.399934 GGATGTCTTTACCCCGCAAAAATA 59.600 41.667 0.00 0.00 0.00 1.40
3114 3599 5.786264 TGTCTTTACCCCGCAAAAATAAA 57.214 34.783 0.00 0.00 0.00 1.40
3115 3600 6.347859 TGTCTTTACCCCGCAAAAATAAAT 57.652 33.333 0.00 0.00 0.00 1.40
3181 3752 0.685097 AGTTCTGTTGGCGGCTTCTA 59.315 50.000 11.43 0.00 0.00 2.10
3478 4054 3.826524 TGGTTGTCAAAAGCCATCACTA 58.173 40.909 0.00 0.00 0.00 2.74
3495 4071 7.680588 GCCATCACTAACTGAATCCAGATTTTC 60.681 40.741 0.00 0.00 43.02 2.29
3580 4156 5.237344 ACTGGACAGAAGTTCGAAAATCTTG 59.763 40.000 10.40 9.11 0.00 3.02
3593 4169 7.421530 TCGAAAATCTTGGTCTTTACTCTTG 57.578 36.000 0.00 0.00 0.00 3.02
3778 4481 7.596749 TTTGCACAAAGCTAGAGATTACTAC 57.403 36.000 0.00 0.00 45.94 2.73
3783 4486 7.027760 CACAAAGCTAGAGATTACTACGACAA 58.972 38.462 0.00 0.00 0.00 3.18
3857 4560 4.153475 TGAGCATTTAACTTCCGTAGCAAC 59.847 41.667 0.00 0.00 0.00 4.17
3895 4598 2.760650 AGTGGCGATGAGACATGAGTTA 59.239 45.455 0.00 0.00 41.88 2.24
3994 8494 9.013229 AGCAAAGTGATATCTTACACATGAAAA 57.987 29.630 0.00 0.00 39.18 2.29
3995 8495 9.793252 GCAAAGTGATATCTTACACATGAAAAT 57.207 29.630 0.00 0.00 39.18 1.82
4022 8542 4.708726 ATTGGAAGTATGCAAGCTTGTC 57.291 40.909 26.55 18.78 40.42 3.18
4128 11776 8.139989 CCTTTCTCTTTTATGGGATAAATGCAG 58.860 37.037 0.00 0.00 34.92 4.41
4283 12617 6.352016 ACTAGAAATCACATGCGGATATCT 57.648 37.500 2.05 0.00 0.00 1.98
4504 12838 0.179000 CGGAGGGAGTAGCTTGCAAT 59.821 55.000 0.00 0.00 0.00 3.56
4607 12941 2.026729 TCATTTCCACCGCCTCAATACA 60.027 45.455 0.00 0.00 0.00 2.29
4653 12987 1.271840 TTGCTTCCCAGTCCGCCTAT 61.272 55.000 0.00 0.00 0.00 2.57
4654 12988 1.227674 GCTTCCCAGTCCGCCTATG 60.228 63.158 0.00 0.00 0.00 2.23
4665 12999 0.381801 CCGCCTATGGTCATTGTTGC 59.618 55.000 0.00 0.00 0.00 4.17
4687 13021 8.615211 GTTGCACTCTTGTTCATCATATAATCA 58.385 33.333 0.00 0.00 0.00 2.57
4768 13102 1.983196 TTGTGGTGTTGACGTTGGCG 61.983 55.000 0.00 0.00 44.93 5.69
4779 13113 2.430367 GTTGGCGTGAGGGTTCCT 59.570 61.111 0.00 0.00 36.03 3.36
4849 13183 5.843673 TCAAATTGTCCACAAGCTTGTAA 57.156 34.783 30.67 21.35 39.91 2.41
4879 13213 8.816640 ATGATAAACACAAGCCAGTTTAAAAG 57.183 30.769 0.00 0.00 41.76 2.27
4880 13214 6.699642 TGATAAACACAAGCCAGTTTAAAAGC 59.300 34.615 0.00 0.00 41.76 3.51
4881 13215 4.736126 AACACAAGCCAGTTTAAAAGCT 57.264 36.364 3.46 3.46 37.10 3.74
4882 13216 5.845391 AACACAAGCCAGTTTAAAAGCTA 57.155 34.783 8.57 0.00 34.49 3.32
4884 13218 5.772521 ACACAAGCCAGTTTAAAAGCTATG 58.227 37.500 8.57 11.40 34.49 2.23
4885 13219 5.534654 ACACAAGCCAGTTTAAAAGCTATGA 59.465 36.000 17.96 0.00 34.49 2.15
4886 13220 6.209391 ACACAAGCCAGTTTAAAAGCTATGAT 59.791 34.615 17.96 2.06 34.49 2.45
4887 13221 7.393234 ACACAAGCCAGTTTAAAAGCTATGATA 59.607 33.333 17.96 0.00 34.49 2.15
4889 13223 9.627123 ACAAGCCAGTTTAAAAGCTATGATATA 57.373 29.630 8.57 0.00 34.49 0.86
4890 13224 9.884465 CAAGCCAGTTTAAAAGCTATGATATAC 57.116 33.333 8.57 0.00 34.49 1.47
4892 13226 9.057089 AGCCAGTTTAAAAGCTATGATATACAC 57.943 33.333 6.81 0.00 32.73 2.90
4893 13227 8.836413 GCCAGTTTAAAAGCTATGATATACACA 58.164 33.333 0.00 0.00 0.00 3.72
4903 13237 8.498054 AGCTATGATATACACAATGGTAATGC 57.502 34.615 0.00 0.00 0.00 3.56
4905 13239 8.177663 GCTATGATATACACAATGGTAATGCAC 58.822 37.037 0.00 0.00 0.00 4.57
4908 13242 8.098220 TGATATACACAATGGTAATGCACATC 57.902 34.615 0.00 0.00 0.00 3.06
4909 13243 5.772825 ATACACAATGGTAATGCACATCC 57.227 39.130 0.00 0.00 0.00 3.51
4911 13245 4.854173 ACACAATGGTAATGCACATCCTA 58.146 39.130 0.00 0.00 0.00 2.94
4913 13247 6.600388 ACACAATGGTAATGCACATCCTATA 58.400 36.000 0.00 0.00 0.00 1.31
4917 13251 8.632679 ACAATGGTAATGCACATCCTATAAAAG 58.367 33.333 0.00 0.00 0.00 2.27
4918 13252 6.633500 TGGTAATGCACATCCTATAAAAGC 57.367 37.500 0.00 0.00 0.00 3.51
4922 13256 1.946768 GCACATCCTATAAAAGCGGCA 59.053 47.619 1.45 0.00 0.00 5.69
4924 13258 2.031682 CACATCCTATAAAAGCGGCAGC 60.032 50.000 0.00 0.00 45.58 5.25
4938 13272 4.034258 CAGCACAGGCCACAAGCG 62.034 66.667 5.01 0.00 45.17 4.68
4953 13287 4.395583 GCGGCAGCACAGCTCAAC 62.396 66.667 3.18 0.00 44.35 3.18
5037 13542 9.191995 CTACAACACCAAAATTTCACTAAATCC 57.808 33.333 0.00 0.00 34.12 3.01
5200 13706 4.940463 GGTTTTCCCTACTGTTTTTGGTC 58.060 43.478 0.00 0.00 0.00 4.02
5204 13710 5.585820 TTCCCTACTGTTTTTGGTCAAAC 57.414 39.130 0.00 0.00 37.20 2.93
5205 13711 4.862371 TCCCTACTGTTTTTGGTCAAACT 58.138 39.130 0.00 0.00 37.51 2.66
5206 13712 5.265989 TCCCTACTGTTTTTGGTCAAACTT 58.734 37.500 0.00 0.00 37.51 2.66
5207 13713 5.717654 TCCCTACTGTTTTTGGTCAAACTTT 59.282 36.000 0.00 0.00 37.51 2.66
5208 13714 6.211785 TCCCTACTGTTTTTGGTCAAACTTTT 59.788 34.615 0.00 0.00 37.51 2.27
5209 13715 6.876789 CCCTACTGTTTTTGGTCAAACTTTTT 59.123 34.615 0.00 0.00 37.51 1.94
5415 13921 9.899226 CGATATATGTGACAGATAGTGAAGAAA 57.101 33.333 6.09 0.00 0.00 2.52
5465 13974 8.443953 AGCATAACTTTGACCTGAGAAATATC 57.556 34.615 0.00 0.00 0.00 1.63
5593 14103 9.625747 TCACAGGCTTATCATTATTGTTATTCA 57.374 29.630 0.00 0.00 0.00 2.57
5698 14208 0.979665 CCCTTGTCCTGCTCTTGAGA 59.020 55.000 1.30 0.00 0.00 3.27
5701 14211 2.224378 CCTTGTCCTGCTCTTGAGAACA 60.224 50.000 1.30 0.00 0.00 3.18
5717 14227 8.134895 TCTTGAGAACATTTTATTGGACAACAC 58.865 33.333 0.00 0.00 0.00 3.32
5772 14282 2.284150 CGATTGCCTGTATTGTACACCG 59.716 50.000 0.00 0.00 34.46 4.94
5878 14388 0.962356 AATCTGCAGTTGGGAAGCGG 60.962 55.000 14.67 0.00 36.00 5.52
5957 14467 8.344098 CCAAAATAAGTGTCGTGGTTTTAGTTA 58.656 33.333 0.00 0.00 0.00 2.24
5962 14472 9.887406 ATAAGTGTCGTGGTTTTAGTTAAAATG 57.113 29.630 0.86 0.00 37.48 2.32
5984 14494 8.887036 AATGAGTCCAAATTCAAACTAAAACC 57.113 30.769 0.00 0.00 0.00 3.27
5986 14496 8.017418 TGAGTCCAAATTCAAACTAAAACCAT 57.983 30.769 0.00 0.00 0.00 3.55
5988 14498 8.017418 AGTCCAAATTCAAACTAAAACCATGA 57.983 30.769 0.00 0.00 0.00 3.07
6018 14528 3.675348 TGGAACGGAGGGAGTATAAGA 57.325 47.619 0.00 0.00 0.00 2.10
6026 14536 7.427989 ACGGAGGGAGTATAAGACATTTTAA 57.572 36.000 0.00 0.00 0.00 1.52
6028 14538 7.767659 ACGGAGGGAGTATAAGACATTTTAAAC 59.232 37.037 0.00 0.00 0.00 2.01
6120 14630 8.889717 TCTGAATCAGAAAAGAGTTAAAACGTT 58.110 29.630 10.99 0.00 37.57 3.99
6154 14825 2.782341 ACGGAGGGAGTACTATACCTGT 59.218 50.000 15.71 7.60 32.42 4.00
6155 14826 3.976654 ACGGAGGGAGTACTATACCTGTA 59.023 47.826 15.71 0.00 32.42 2.74
6156 14827 4.202409 ACGGAGGGAGTACTATACCTGTAC 60.202 50.000 15.71 7.09 40.19 2.90
6157 14828 4.322567 GGAGGGAGTACTATACCTGTACG 58.677 52.174 15.71 0.00 43.41 3.67
6158 14829 4.040952 GGAGGGAGTACTATACCTGTACGA 59.959 50.000 15.71 0.00 43.41 3.43
6159 14830 5.280419 GGAGGGAGTACTATACCTGTACGAT 60.280 48.000 15.71 0.00 43.41 3.73
6160 14831 6.198237 AGGGAGTACTATACCTGTACGATT 57.802 41.667 11.34 0.00 43.41 3.34
6161 14832 7.321717 AGGGAGTACTATACCTGTACGATTA 57.678 40.000 11.34 0.00 43.41 1.75
6162 14833 7.393216 AGGGAGTACTATACCTGTACGATTAG 58.607 42.308 11.34 0.00 43.41 1.73
6163 14834 7.236432 AGGGAGTACTATACCTGTACGATTAGA 59.764 40.741 11.34 0.00 43.41 2.10
6164 14835 7.333174 GGGAGTACTATACCTGTACGATTAGAC 59.667 44.444 0.00 0.00 43.41 2.59
6165 14836 7.875041 GGAGTACTATACCTGTACGATTAGACA 59.125 40.741 0.00 0.00 43.41 3.41
6166 14837 8.830201 AGTACTATACCTGTACGATTAGACAG 57.170 38.462 0.00 0.00 43.41 3.51
6167 14838 6.557291 ACTATACCTGTACGATTAGACAGC 57.443 41.667 0.00 0.00 41.48 4.40
6168 14839 4.850347 ATACCTGTACGATTAGACAGCC 57.150 45.455 0.00 0.00 41.48 4.85
6169 14840 2.736347 ACCTGTACGATTAGACAGCCT 58.264 47.619 0.00 0.00 41.48 4.58
6170 14841 2.427453 ACCTGTACGATTAGACAGCCTG 59.573 50.000 0.00 0.00 41.48 4.85
6240 14911 0.527565 ACAAAGCATCATTCGCACCC 59.472 50.000 0.00 0.00 0.00 4.61
6247 14918 0.828022 ATCATTCGCACCCCGTCTTA 59.172 50.000 0.00 0.00 38.35 2.10
6248 14919 0.828022 TCATTCGCACCCCGTCTTAT 59.172 50.000 0.00 0.00 38.35 1.73
6249 14920 1.208535 TCATTCGCACCCCGTCTTATT 59.791 47.619 0.00 0.00 38.35 1.40
6250 14921 1.597663 CATTCGCACCCCGTCTTATTC 59.402 52.381 0.00 0.00 38.35 1.75
6251 14922 0.899720 TTCGCACCCCGTCTTATTCT 59.100 50.000 0.00 0.00 38.35 2.40
6252 14923 0.899720 TCGCACCCCGTCTTATTCTT 59.100 50.000 0.00 0.00 38.35 2.52
6253 14924 1.006832 CGCACCCCGTCTTATTCTTG 58.993 55.000 0.00 0.00 0.00 3.02
6254 14925 1.674817 CGCACCCCGTCTTATTCTTGT 60.675 52.381 0.00 0.00 0.00 3.16
6255 14926 2.433436 GCACCCCGTCTTATTCTTGTT 58.567 47.619 0.00 0.00 0.00 2.83
6256 14927 2.817844 GCACCCCGTCTTATTCTTGTTT 59.182 45.455 0.00 0.00 0.00 2.83
6257 14928 3.254903 GCACCCCGTCTTATTCTTGTTTT 59.745 43.478 0.00 0.00 0.00 2.43
6258 14929 4.261867 GCACCCCGTCTTATTCTTGTTTTT 60.262 41.667 0.00 0.00 0.00 1.94
6390 15061 5.012354 TGTCCCGATTAAGTACCTGAACTTT 59.988 40.000 0.00 0.00 40.20 2.66
6406 15077 4.334481 TGAACTTTTTCCTTGAAGACGACC 59.666 41.667 0.00 0.00 0.00 4.79
6592 15264 7.406031 AGAATCTTCTTGGTGACGTTCTATA 57.594 36.000 0.00 0.00 32.55 1.31
6597 15269 5.515797 TCTTGGTGACGTTCTATATGAGG 57.484 43.478 0.00 0.00 0.00 3.86
6657 15329 4.261322 CCGAGGAGGTAATGCAATTCATTG 60.261 45.833 11.20 0.00 44.62 2.82
6702 15374 9.639601 CTTCTGTACATTCTGAAGTACACAATA 57.360 33.333 19.55 9.70 43.92 1.90
6707 15379 7.133891 ACATTCTGAAGTACACAATAAGCAC 57.866 36.000 0.00 0.00 0.00 4.40
6708 15380 6.936900 ACATTCTGAAGTACACAATAAGCACT 59.063 34.615 0.00 0.00 0.00 4.40
6709 15381 6.785488 TTCTGAAGTACACAATAAGCACTG 57.215 37.500 0.00 0.00 0.00 3.66
6710 15382 4.690748 TCTGAAGTACACAATAAGCACTGC 59.309 41.667 0.00 0.00 0.00 4.40
6711 15383 3.431912 TGAAGTACACAATAAGCACTGCG 59.568 43.478 0.00 0.00 0.00 5.18
6712 15384 1.732259 AGTACACAATAAGCACTGCGC 59.268 47.619 0.00 0.00 42.91 6.09
6740 15412 8.587627 CGCAATAATATTTAGTATCTTTGCGG 57.412 34.615 19.25 8.83 46.63 5.69
6884 15560 8.957901 TGCTCATCTCAGCAATATGCATCGAT 62.958 42.308 0.19 0.00 46.65 3.59
6895 15571 8.539062 GCAATATGCATCGATTTGACATATAC 57.461 34.615 0.19 10.05 44.26 1.47
6896 15572 7.371615 GCAATATGCATCGATTTGACATATACG 59.628 37.037 0.19 12.14 44.26 3.06
6897 15573 8.382875 CAATATGCATCGATTTGACATATACGT 58.617 33.333 0.19 0.00 33.85 3.57
6898 15574 9.581099 AATATGCATCGATTTGACATATACGTA 57.419 29.630 0.19 0.00 33.85 3.57
6899 15575 6.927933 TGCATCGATTTGACATATACGTAG 57.072 37.500 0.08 0.00 0.00 3.51
6996 15672 8.517878 CCCAATATGTTTGGCTGAGAATATTAG 58.482 37.037 4.18 0.00 38.23 1.73
7000 15676 6.832520 TGTTTGGCTGAGAATATTAGCAAA 57.167 33.333 10.17 3.31 39.15 3.68
7018 15694 3.928375 GCAAAACAGGAATGCTACCAATG 59.072 43.478 0.00 0.00 37.12 2.82
7019 15695 4.561326 GCAAAACAGGAATGCTACCAATGT 60.561 41.667 0.00 0.00 37.12 2.71
7020 15696 5.336372 GCAAAACAGGAATGCTACCAATGTA 60.336 40.000 0.00 0.00 37.12 2.29
7099 15781 3.047877 CAACGGTCCCAAGACGCC 61.048 66.667 0.00 0.00 44.54 5.68
7140 15826 6.474819 TCAATTTCGAAGCAGAATAACGAA 57.525 33.333 0.00 0.00 40.30 3.85
7141 15827 6.534059 TCAATTTCGAAGCAGAATAACGAAG 58.466 36.000 0.00 0.00 42.26 3.79
7143 15829 7.329962 TCAATTTCGAAGCAGAATAACGAAGTA 59.670 33.333 0.00 0.00 45.00 2.24
7202 15888 7.514721 ACAAAGTTGACCTTCTTATCCAAGTA 58.485 34.615 0.00 0.00 33.20 2.24
7235 15921 4.067192 CAAGATTCTTTGCCCCCAAAAAG 58.933 43.478 0.00 0.00 40.21 2.27
7253 15939 1.613630 GAGCCAACCTCCTCCCTGA 60.614 63.158 0.00 0.00 34.35 3.86
7382 16069 3.030291 TGAAACTGCACTCCCAACATTT 58.970 40.909 0.00 0.00 0.00 2.32
7503 16190 8.986991 AGAGATATCAGAAATGTAACAGAAGGT 58.013 33.333 5.32 0.00 0.00 3.50
7576 16263 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36
7577 16264 2.846206 TGTACTACTCCCTCCGTTCCTA 59.154 50.000 0.00 0.00 0.00 2.94
7581 16268 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
7583 16270 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
7584 16271 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
7586 16273 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
7588 16275 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
7620 16307 7.923888 AGATTTCAAATGGAGTATCACATTCG 58.076 34.615 0.00 0.00 35.78 3.34
7621 16308 6.435430 TTTCAAATGGAGTATCACATTCGG 57.565 37.500 0.00 0.00 35.78 4.30
7622 16309 5.351948 TCAAATGGAGTATCACATTCGGA 57.648 39.130 0.00 0.00 35.78 4.55
7624 16311 5.759763 TCAAATGGAGTATCACATTCGGATG 59.240 40.000 0.88 0.88 35.78 3.51
7626 16313 6.419484 AATGGAGTATCACATTCGGATGTA 57.581 37.500 9.54 0.00 44.55 2.29
7628 16315 5.783111 TGGAGTATCACATTCGGATGTATG 58.217 41.667 9.54 0.00 44.55 2.39
7629 16316 5.304357 TGGAGTATCACATTCGGATGTATGT 59.696 40.000 9.54 1.06 44.55 2.29
7630 16317 6.492087 TGGAGTATCACATTCGGATGTATGTA 59.508 38.462 9.54 0.06 44.55 2.29
7631 16318 7.030165 GGAGTATCACATTCGGATGTATGTAG 58.970 42.308 9.54 0.00 44.55 2.74
7632 16319 7.094334 GGAGTATCACATTCGGATGTATGTAGA 60.094 40.741 9.54 2.40 44.55 2.59
7633 16320 7.594714 AGTATCACATTCGGATGTATGTAGAC 58.405 38.462 9.54 3.47 44.55 2.59
7634 16321 5.845391 TCACATTCGGATGTATGTAGACA 57.155 39.130 9.54 0.00 44.55 3.41
7635 16322 6.405278 TCACATTCGGATGTATGTAGACAT 57.595 37.500 9.54 0.08 44.55 3.06
7636 16323 7.519032 TCACATTCGGATGTATGTAGACATA 57.481 36.000 9.54 0.00 44.55 2.29
7637 16324 8.122472 TCACATTCGGATGTATGTAGACATAT 57.878 34.615 9.54 0.00 44.55 1.78
7638 16325 8.585018 TCACATTCGGATGTATGTAGACATATT 58.415 33.333 9.54 0.00 44.55 1.28
7639 16326 9.208022 CACATTCGGATGTATGTAGACATATTT 57.792 33.333 9.54 0.00 44.55 1.40
7640 16327 9.778741 ACATTCGGATGTATGTAGACATATTTT 57.221 29.630 7.81 0.00 44.51 1.82
7665 16352 9.712305 TTAGAGTGTAAAATTTTGAGAGAGAGG 57.288 33.333 13.76 0.00 0.00 3.69
7666 16353 7.164803 AGAGTGTAAAATTTTGAGAGAGAGGG 58.835 38.462 13.76 0.00 0.00 4.30
7667 16354 7.016661 AGAGTGTAAAATTTTGAGAGAGAGGGA 59.983 37.037 13.76 0.00 0.00 4.20
7668 16355 7.164803 AGTGTAAAATTTTGAGAGAGAGGGAG 58.835 38.462 13.76 0.00 0.00 4.30
7669 16356 6.372937 GTGTAAAATTTTGAGAGAGAGGGAGG 59.627 42.308 13.76 0.00 0.00 4.30
7670 16357 4.582973 AAATTTTGAGAGAGAGGGAGGG 57.417 45.455 0.00 0.00 0.00 4.30
7671 16358 3.498614 ATTTTGAGAGAGAGGGAGGGA 57.501 47.619 0.00 0.00 0.00 4.20
7672 16359 2.541233 TTTGAGAGAGAGGGAGGGAG 57.459 55.000 0.00 0.00 0.00 4.30
7673 16360 0.633921 TTGAGAGAGAGGGAGGGAGG 59.366 60.000 0.00 0.00 0.00 4.30
7674 16361 1.292941 TGAGAGAGAGGGAGGGAGGG 61.293 65.000 0.00 0.00 0.00 4.30
7675 16362 2.018086 AGAGAGAGGGAGGGAGGGG 61.018 68.421 0.00 0.00 0.00 4.79
7676 16363 3.039526 AGAGAGGGAGGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
7677 16364 3.036959 GAGAGGGAGGGAGGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
7678 16365 2.543637 AGAGGGAGGGAGGGGGAA 60.544 66.667 0.00 0.00 0.00 3.97
7679 16366 2.040359 GAGGGAGGGAGGGGGAAG 60.040 72.222 0.00 0.00 0.00 3.46
7680 16367 3.711782 AGGGAGGGAGGGGGAAGG 61.712 72.222 0.00 0.00 0.00 3.46
7681 16368 4.845307 GGGAGGGAGGGGGAAGGG 62.845 77.778 0.00 0.00 0.00 3.95
7682 16369 3.707189 GGAGGGAGGGGGAAGGGA 61.707 72.222 0.00 0.00 0.00 4.20
7687 16374 2.040359 GAGGGGGAAGGGAGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
7698 16385 1.381089 GGGAGGGAGGGAGGGAGTAT 61.381 65.000 0.00 0.00 0.00 2.12
7700 16387 1.061268 GGAGGGAGGGAGGGAGTATTT 60.061 57.143 0.00 0.00 0.00 1.40
7703 16390 3.904965 GAGGGAGGGAGGGAGTATTTTAG 59.095 52.174 0.00 0.00 0.00 1.85
7705 16392 3.904965 GGGAGGGAGGGAGTATTTTAGAG 59.095 52.174 0.00 0.00 0.00 2.43
7706 16393 4.558715 GGAGGGAGGGAGTATTTTAGAGT 58.441 47.826 0.00 0.00 0.00 3.24
7708 16395 4.961585 AGGGAGGGAGTATTTTAGAGTGT 58.038 43.478 0.00 0.00 0.00 3.55
7709 16396 6.101274 AGGGAGGGAGTATTTTAGAGTGTA 57.899 41.667 0.00 0.00 0.00 2.90
7710 16397 6.509386 AGGGAGGGAGTATTTTAGAGTGTAA 58.491 40.000 0.00 0.00 0.00 2.41
7711 16398 6.964086 AGGGAGGGAGTATTTTAGAGTGTAAA 59.036 38.462 0.00 0.00 0.00 2.01
7713 16400 8.272889 GGGAGGGAGTATTTTAGAGTGTAAAAT 58.727 37.037 18.72 18.72 39.55 1.82
7714 16401 9.327628 GGAGGGAGTATTTTAGAGTGTAAAATC 57.672 37.037 18.37 11.75 37.95 2.17
7717 16404 9.032420 GGGAGTATTTTAGAGTGTAAAATCTCG 57.968 37.037 18.37 0.00 37.95 4.04
7718 16405 9.798994 GGAGTATTTTAGAGTGTAAAATCTCGA 57.201 33.333 18.37 2.35 37.95 4.04
7722 16409 8.934507 ATTTTAGAGTGTAAAATCTCGAGAGG 57.065 34.615 21.52 0.00 33.33 3.69
7723 16410 4.993029 AGAGTGTAAAATCTCGAGAGGG 57.007 45.455 21.52 0.00 36.03 4.30
7730 16417 3.336820 TCTCGAGAGGGAGGGAGG 58.663 66.667 12.08 0.00 34.08 4.30
7731 16418 2.197324 CTCGAGAGGGAGGGAGGG 59.803 72.222 6.58 0.00 0.00 4.30
7732 16419 2.286962 TCGAGAGGGAGGGAGGGA 60.287 66.667 0.00 0.00 0.00 4.20
7733 16420 2.197324 CGAGAGGGAGGGAGGGAG 59.803 72.222 0.00 0.00 0.00 4.30
7734 16421 2.612251 GAGAGGGAGGGAGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
7735 16422 3.039526 AGAGGGAGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
7736 16423 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
7737 16424 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
7739 16426 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
7741 16428 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
7743 16430 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
7745 16432 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
7747 16434 2.612251 GGAGGGAGGGAGGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
7750 16437 0.996762 GAGGGAGGGAGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
7751 16438 0.998945 AGGGAGGGAGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
7770 16841 4.930963 AGAGAGAGTCAGCGTATTGATTG 58.069 43.478 0.00 0.00 0.00 2.67
7817 16888 4.995487 CGGGAAAATGTACCTATAAGGCTC 59.005 45.833 0.00 0.00 39.63 4.70
7846 16918 7.843760 ACAATATTGGATGAGGGGTCAATAAAA 59.156 33.333 19.37 0.00 36.22 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.123227 CAGTAGACAAAGTTTGTTCTCCCA 58.877 41.667 21.70 4.43 45.52 4.37
44 45 0.317160 CACCGTTGGTCAGCAGTAGA 59.683 55.000 0.00 0.00 31.02 2.59
503 504 1.304617 GGGAAGCAGGAGGAAAGGG 59.695 63.158 0.00 0.00 0.00 3.95
516 518 4.113815 TGCTGATGGCGGGGGAAG 62.114 66.667 0.00 0.00 45.43 3.46
531 533 2.743928 CCTGTCTTGGAGCGGTGC 60.744 66.667 0.00 0.00 0.00 5.01
546 548 0.460311 CGACGAGGCTATGTTTCCCT 59.540 55.000 0.00 0.00 0.00 4.20
555 557 1.303888 ACCAAGGTCGACGAGGCTA 60.304 57.895 16.51 0.00 0.00 3.93
575 577 4.467084 GGCGATGGCGTCTTCCCA 62.467 66.667 5.00 0.00 39.48 4.37
630 632 2.150397 CGCTAGGATTAGGGTTTCGG 57.850 55.000 0.00 0.00 35.67 4.30
649 651 4.811761 GCGGCGATTGCGTTCCAC 62.812 66.667 12.98 0.00 44.10 4.02
686 695 0.928505 TGATTGCATCTGGGGTCCAT 59.071 50.000 0.00 0.00 30.82 3.41
708 717 4.142816 CGTACTTATAGGATACGAACCGGG 60.143 50.000 6.32 0.00 43.37 5.73
717 726 7.333528 ACGTGGTTTTCGTACTTATAGGATA 57.666 36.000 0.00 0.00 39.78 2.59
732 741 7.715657 TGTATTCGTATAGGATACGTGGTTTT 58.284 34.615 16.22 2.79 46.39 2.43
733 742 7.275888 TGTATTCGTATAGGATACGTGGTTT 57.724 36.000 16.22 4.11 46.39 3.27
773 782 2.851263 TGGTCGTGCATACCTTCTTT 57.149 45.000 18.75 0.00 37.91 2.52
778 787 0.393077 GGCTATGGTCGTGCATACCT 59.607 55.000 18.75 9.42 37.91 3.08
785 794 3.467226 ACGGGGGCTATGGTCGTG 61.467 66.667 0.00 0.00 32.60 4.35
788 797 2.830186 TTTGCACGGGGGCTATGGTC 62.830 60.000 0.00 0.00 34.04 4.02
826 836 3.480470 GCTAATTGCTATCAGGCTTGGA 58.520 45.455 0.00 0.00 38.95 3.53
841 852 4.697352 GCGGTATCAATGAGATGGCTAATT 59.303 41.667 0.00 0.00 37.57 1.40
1282 1304 3.768757 TGAAATCCCTGCCCATACAAAAG 59.231 43.478 0.00 0.00 0.00 2.27
1464 1506 0.171903 GCAGCATTGCCCAGTTACAG 59.828 55.000 4.70 0.00 44.74 2.74
1535 1583 2.480419 GGAACAACTTCACACCTCATCG 59.520 50.000 0.00 0.00 0.00 3.84
1658 1968 6.375377 CATGAATTTCCTGGTGCAAATTTTG 58.625 36.000 4.72 4.72 33.31 2.44
1660 1970 4.456566 GCATGAATTTCCTGGTGCAAATTT 59.543 37.500 0.00 0.00 33.31 1.82
1662 1972 3.602483 GCATGAATTTCCTGGTGCAAAT 58.398 40.909 0.00 0.00 33.09 2.32
1664 1974 1.275856 GGCATGAATTTCCTGGTGCAA 59.724 47.619 0.00 0.00 34.45 4.08
1665 1975 0.896923 GGCATGAATTTCCTGGTGCA 59.103 50.000 0.00 0.00 34.45 4.57
1667 1977 2.564062 AACAGGCATGAATTTCCTGGTG 59.436 45.455 17.42 0.00 45.52 4.17
1742 2052 6.706055 TGTGAAGTTACTTAAGCTTGATCG 57.294 37.500 9.86 0.00 0.00 3.69
1772 2082 7.047891 CCCTTCTGTTATGCTACTTTGTATGA 58.952 38.462 0.00 0.00 0.00 2.15
1781 2091 1.211949 TGCCCCCTTCTGTTATGCTAC 59.788 52.381 0.00 0.00 0.00 3.58
1799 2109 2.057316 CAGACTATGATAGCGCAGTGC 58.943 52.381 11.47 4.58 46.98 4.40
1803 2113 2.605580 CGAAGCAGACTATGATAGCGCA 60.606 50.000 11.47 0.00 0.00 6.09
1804 2114 1.982223 CGAAGCAGACTATGATAGCGC 59.018 52.381 0.00 0.00 0.00 5.92
1830 2140 0.101759 TCTATTTCGAACCGAGGGCG 59.898 55.000 0.00 0.00 37.14 6.13
1831 2141 1.538419 CCTCTATTTCGAACCGAGGGC 60.538 57.143 20.78 0.00 38.04 5.19
1832 2142 1.755380 ACCTCTATTTCGAACCGAGGG 59.245 52.381 27.13 17.36 44.27 4.30
1842 2172 9.521503 GCCAAGATGAAAAATAACCTCTATTTC 57.478 33.333 0.00 0.00 0.00 2.17
1894 2225 8.646004 CAGATCCAGATAATAGAAGAGGAAACA 58.354 37.037 0.00 0.00 0.00 2.83
1900 2231 7.230849 AGCACAGATCCAGATAATAGAAGAG 57.769 40.000 0.00 0.00 0.00 2.85
1902 2233 7.440198 TCAAGCACAGATCCAGATAATAGAAG 58.560 38.462 0.00 0.00 0.00 2.85
1907 2238 5.627182 ACTCAAGCACAGATCCAGATAAT 57.373 39.130 0.00 0.00 0.00 1.28
1932 2263 3.737559 ACTGCCCATGGACAGATAAAA 57.262 42.857 32.11 0.00 37.35 1.52
1938 2269 2.026822 ACTCTTAACTGCCCATGGACAG 60.027 50.000 24.99 24.99 39.86 3.51
1949 2280 8.915654 GCCAAATTCACATAAAACTCTTAACTG 58.084 33.333 0.00 0.00 0.00 3.16
1951 2282 7.593644 ACGCCAAATTCACATAAAACTCTTAAC 59.406 33.333 0.00 0.00 0.00 2.01
1958 2289 7.433719 TGCATATACGCCAAATTCACATAAAAC 59.566 33.333 0.00 0.00 0.00 2.43
2011 2345 7.514784 TGATGATATGCCATCTTTTACTTGG 57.485 36.000 0.00 0.00 42.49 3.61
2057 2391 3.181465 CCTCATCGTGCCACCTAGTATTT 60.181 47.826 0.00 0.00 0.00 1.40
2058 2392 2.365617 CCTCATCGTGCCACCTAGTATT 59.634 50.000 0.00 0.00 0.00 1.89
2060 2394 1.064240 TCCTCATCGTGCCACCTAGTA 60.064 52.381 0.00 0.00 0.00 1.82
2061 2395 0.324368 TCCTCATCGTGCCACCTAGT 60.324 55.000 0.00 0.00 0.00 2.57
2142 2489 5.364620 ACATAAAGGCTAGGGGGTATAGA 57.635 43.478 0.00 0.00 0.00 1.98
2149 2496 3.584848 AGATGCTACATAAAGGCTAGGGG 59.415 47.826 0.00 0.00 0.00 4.79
2173 2520 7.515643 AGAATTAAATGGTCGTTTAGTTCGTG 58.484 34.615 17.33 0.00 41.38 4.35
2176 2523 7.007099 CGCAAGAATTAAATGGTCGTTTAGTTC 59.993 37.037 16.41 16.41 39.03 3.01
2184 2531 3.100817 CAGCGCAAGAATTAAATGGTCG 58.899 45.455 11.47 0.00 43.02 4.79
2186 2533 2.166254 CCCAGCGCAAGAATTAAATGGT 59.834 45.455 11.47 0.00 43.02 3.55
2506 2862 4.154918 CAGAAACAAGATGGCTACAAGGTC 59.845 45.833 0.00 0.00 0.00 3.85
2514 2882 4.090761 TCTGAACAGAAACAAGATGGCT 57.909 40.909 1.79 0.00 33.91 4.75
2572 2944 5.171476 TGTCATCTAGTAAGCAAAGCTGAC 58.829 41.667 0.00 0.00 40.19 3.51
2573 2945 5.405935 TGTCATCTAGTAAGCAAAGCTGA 57.594 39.130 0.00 0.00 39.62 4.26
2704 3189 1.823041 GGGACGGAGGGAGTAGACG 60.823 68.421 0.00 0.00 0.00 4.18
2707 3192 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
2791 3276 4.625324 CGATTTTGGAATGTACTCCCTCCA 60.625 45.833 0.00 0.00 36.16 3.86
3135 3706 8.874744 AGCCTTCATGATATTTGCATAGTAAT 57.125 30.769 0.00 0.00 0.00 1.89
3136 3707 7.938490 TGAGCCTTCATGATATTTGCATAGTAA 59.062 33.333 0.00 0.00 0.00 2.24
3137 3708 7.452562 TGAGCCTTCATGATATTTGCATAGTA 58.547 34.615 0.00 0.00 0.00 1.82
3138 3709 6.301486 TGAGCCTTCATGATATTTGCATAGT 58.699 36.000 0.00 0.00 0.00 2.12
3155 3726 0.886490 CGCCAACAGAACTGAGCCTT 60.886 55.000 8.87 0.00 0.00 4.35
3181 3752 1.857583 GGGGAGGGGGTAGCTTATTTT 59.142 52.381 0.00 0.00 0.00 1.82
3478 4054 4.347607 CAGGGGAAAATCTGGATTCAGTT 58.652 43.478 0.00 0.00 41.59 3.16
3560 4136 5.467063 AGACCAAGATTTTCGAACTTCTGTC 59.533 40.000 0.00 7.89 0.00 3.51
3593 4169 3.211045 TGCCACCAACTCAGACTTTTAC 58.789 45.455 0.00 0.00 0.00 2.01
3778 4481 4.191662 AGTTGTTTAAACGCTCTTGTCG 57.808 40.909 13.45 0.00 0.00 4.35
3783 4486 3.563808 TGCATGAGTTGTTTAAACGCTCT 59.436 39.130 27.68 19.43 35.76 4.09
3857 4560 2.124903 CACTAGCTAAATACCCGTGCG 58.875 52.381 0.00 0.00 0.00 5.34
3911 4614 5.296151 TCCATACCATCAAAGATCTCCAC 57.704 43.478 0.00 0.00 0.00 4.02
3994 8494 6.704310 AGCTTGCATACTTCCAATTGAAAAT 58.296 32.000 7.12 0.00 31.06 1.82
3995 8495 6.100404 AGCTTGCATACTTCCAATTGAAAA 57.900 33.333 7.12 0.00 31.06 2.29
4012 8512 3.615155 AGAATTCTAGGGACAAGCTTGC 58.385 45.455 26.27 17.80 0.00 4.01
4109 11757 7.516198 AGCTACTGCATTTATCCCATAAAAG 57.484 36.000 0.00 0.00 42.74 2.27
4110 11758 7.896383 AAGCTACTGCATTTATCCCATAAAA 57.104 32.000 0.00 0.00 42.74 1.52
4111 11759 7.896383 AAAGCTACTGCATTTATCCCATAAA 57.104 32.000 0.00 0.00 42.74 1.40
4117 11765 5.526111 TCGGTAAAAGCTACTGCATTTATCC 59.474 40.000 0.00 5.21 42.00 2.59
4128 11776 9.363763 GTATAATTATCCCTCGGTAAAAGCTAC 57.636 37.037 0.00 0.00 0.00 3.58
4283 12617 3.120108 AGCCTGCCCTGTTTATACCTTA 58.880 45.455 0.00 0.00 0.00 2.69
4519 12853 3.418047 CGGTGGAAACCCTTCTACATTT 58.582 45.455 4.15 0.00 43.07 2.32
4520 12854 2.878526 GCGGTGGAAACCCTTCTACATT 60.879 50.000 4.15 0.00 43.07 2.71
4571 12905 2.507339 AATGATTTTTATGCGGGGCG 57.493 45.000 0.00 0.00 0.00 6.13
4607 12941 6.210584 CCAACAAATTCTAGGGTTTATGTGGT 59.789 38.462 0.00 0.00 0.00 4.16
4653 12987 2.653726 ACAAGAGTGCAACAATGACCA 58.346 42.857 0.00 0.00 41.43 4.02
4654 12988 3.066621 TGAACAAGAGTGCAACAATGACC 59.933 43.478 0.00 0.00 41.43 4.02
4687 13021 0.179119 GCCTACGTCCTGTGCGTATT 60.179 55.000 0.00 0.00 42.73 1.89
4725 13059 1.471287 CGATGTGTAGACCGGTTCAGA 59.529 52.381 9.42 8.11 0.00 3.27
4768 13102 2.358322 TGTTTCCAAGGAACCCTCAC 57.642 50.000 0.00 0.00 33.41 3.51
4779 13113 6.424509 GCATCATGAGATTTGTTTGTTTCCAA 59.575 34.615 0.09 0.00 30.20 3.53
4809 13143 5.576337 TTTGATAATCGCGATCTTACAGC 57.424 39.130 23.92 8.77 0.00 4.40
4878 13212 8.102676 TGCATTACCATTGTGTATATCATAGCT 58.897 33.333 0.00 0.00 0.00 3.32
4879 13213 8.177663 GTGCATTACCATTGTGTATATCATAGC 58.822 37.037 0.00 0.00 0.00 2.97
4880 13214 9.218440 TGTGCATTACCATTGTGTATATCATAG 57.782 33.333 0.00 0.00 0.00 2.23
4881 13215 9.737844 ATGTGCATTACCATTGTGTATATCATA 57.262 29.630 0.00 0.00 0.00 2.15
4882 13216 8.640063 ATGTGCATTACCATTGTGTATATCAT 57.360 30.769 0.00 0.00 0.00 2.45
4884 13218 7.391554 AGGATGTGCATTACCATTGTGTATATC 59.608 37.037 0.00 0.00 0.00 1.63
4885 13219 7.233632 AGGATGTGCATTACCATTGTGTATAT 58.766 34.615 0.00 0.00 0.00 0.86
4886 13220 6.600388 AGGATGTGCATTACCATTGTGTATA 58.400 36.000 0.00 0.00 0.00 1.47
4887 13221 5.448654 AGGATGTGCATTACCATTGTGTAT 58.551 37.500 0.00 0.00 0.00 2.29
4889 13223 3.700538 AGGATGTGCATTACCATTGTGT 58.299 40.909 0.00 0.00 0.00 3.72
4890 13224 7.509141 TTATAGGATGTGCATTACCATTGTG 57.491 36.000 0.00 0.00 0.00 3.33
4892 13226 7.596248 GCTTTTATAGGATGTGCATTACCATTG 59.404 37.037 0.00 0.00 0.00 2.82
4893 13227 7.522073 CGCTTTTATAGGATGTGCATTACCATT 60.522 37.037 0.00 0.00 0.00 3.16
4894 13228 6.072508 CGCTTTTATAGGATGTGCATTACCAT 60.073 38.462 0.00 0.00 0.00 3.55
4896 13230 5.334879 CCGCTTTTATAGGATGTGCATTACC 60.335 44.000 0.00 0.00 0.00 2.85
4898 13232 4.215399 GCCGCTTTTATAGGATGTGCATTA 59.785 41.667 0.00 0.00 0.00 1.90
4900 13234 2.554032 GCCGCTTTTATAGGATGTGCAT 59.446 45.455 0.00 0.00 0.00 3.96
4902 13236 1.946768 TGCCGCTTTTATAGGATGTGC 59.053 47.619 0.00 0.00 0.00 4.57
4903 13237 2.031682 GCTGCCGCTTTTATAGGATGTG 60.032 50.000 0.00 0.00 0.00 3.21
4905 13239 2.031682 GTGCTGCCGCTTTTATAGGATG 60.032 50.000 0.70 0.00 36.97 3.51
4908 13242 1.331756 CTGTGCTGCCGCTTTTATAGG 59.668 52.381 0.70 0.00 36.97 2.57
4909 13243 1.331756 CCTGTGCTGCCGCTTTTATAG 59.668 52.381 0.70 0.00 36.97 1.31
4911 13245 1.937546 GCCTGTGCTGCCGCTTTTAT 61.938 55.000 0.70 0.00 36.97 1.40
4913 13247 3.982241 GCCTGTGCTGCCGCTTTT 61.982 61.111 0.70 0.00 36.97 2.27
4930 13264 4.034258 CTGTGCTGCCGCTTGTGG 62.034 66.667 0.70 0.00 36.97 4.17
4934 13268 4.631247 TGAGCTGTGCTGCCGCTT 62.631 61.111 0.70 0.00 39.88 4.68
4936 13270 4.395583 GTTGAGCTGTGCTGCCGC 62.396 66.667 0.00 0.00 39.88 6.53
4938 13272 1.849976 GAGTGTTGAGCTGTGCTGCC 61.850 60.000 0.00 0.00 39.88 4.85
4939 13273 1.573436 GAGTGTTGAGCTGTGCTGC 59.427 57.895 0.00 0.00 39.88 5.25
4942 13276 0.250038 TCAGGAGTGTTGAGCTGTGC 60.250 55.000 0.00 0.00 0.00 4.57
4943 13277 1.069823 ACTCAGGAGTGTTGAGCTGTG 59.930 52.381 0.22 0.00 44.63 3.66
4945 13279 1.342496 TGACTCAGGAGTGTTGAGCTG 59.658 52.381 6.68 0.00 44.63 4.24
4950 13284 4.446371 AGAAGTTTGACTCAGGAGTGTTG 58.554 43.478 6.68 0.00 42.66 3.33
4951 13285 4.762289 AGAAGTTTGACTCAGGAGTGTT 57.238 40.909 6.68 0.00 42.66 3.32
4952 13286 4.762289 AAGAAGTTTGACTCAGGAGTGT 57.238 40.909 6.68 0.00 42.66 3.55
4953 13287 6.763610 ACTTAAAGAAGTTTGACTCAGGAGTG 59.236 38.462 6.68 0.00 43.70 3.51
5007 13512 7.346751 AGTGAAATTTTGGTGTTGTAGATGT 57.653 32.000 0.00 0.00 0.00 3.06
5016 13521 5.227152 GCGGATTTAGTGAAATTTTGGTGT 58.773 37.500 0.00 0.00 35.33 4.16
5415 13921 7.936584 TCACGACAAACCTTCATCTTTATTTT 58.063 30.769 0.00 0.00 0.00 1.82
5425 13934 2.254546 ATGCTCACGACAAACCTTCA 57.745 45.000 0.00 0.00 0.00 3.02
5436 13945 3.325870 TCAGGTCAAAGTTATGCTCACG 58.674 45.455 0.00 0.00 0.00 4.35
5465 13974 5.333645 GCTCAAGATATGTAATTGTCGGCAG 60.334 44.000 0.00 0.00 0.00 4.85
5503 14013 2.618241 CAAGCTAGCAACCACTTCACAA 59.382 45.455 18.83 0.00 0.00 3.33
5510 14020 0.606401 TGGCTCAAGCTAGCAACCAC 60.606 55.000 18.83 2.90 44.64 4.16
5593 14103 6.610075 AGCATATTTGTTCACCTGGAAAAT 57.390 33.333 0.00 1.58 37.23 1.82
5698 14208 9.474920 CACTAATGTGTTGTCCAATAAAATGTT 57.525 29.630 0.00 0.00 39.24 2.71
5701 14211 7.665690 TGCACTAATGTGTTGTCCAATAAAAT 58.334 30.769 0.00 0.00 45.44 1.82
5772 14282 5.583854 TCTCAAGCAATACATCTCAGAAAGC 59.416 40.000 0.00 0.00 0.00 3.51
5835 14345 6.013379 TCTGTAGGACTGAGATCTTTTCTGT 58.987 40.000 0.00 0.00 33.74 3.41
5844 14354 4.285020 TGCAGATTCTGTAGGACTGAGAT 58.715 43.478 14.90 0.00 33.43 2.75
5846 14356 3.446873 ACTGCAGATTCTGTAGGACTGAG 59.553 47.826 28.20 9.30 45.95 3.35
5878 14388 7.011828 AGTACCAAATAAATCGTATGCACAC 57.988 36.000 0.00 0.00 0.00 3.82
5962 14472 8.141268 TCATGGTTTTAGTTTGAATTTGGACTC 58.859 33.333 0.00 0.00 0.00 3.36
5973 14483 9.019764 CAAAGTAAGTGTCATGGTTTTAGTTTG 57.980 33.333 16.63 16.63 37.84 2.93
5974 14484 8.194769 CCAAAGTAAGTGTCATGGTTTTAGTTT 58.805 33.333 0.00 0.98 30.86 2.66
5984 14494 4.062293 TCCGTTCCAAAGTAAGTGTCATG 58.938 43.478 0.00 0.00 0.00 3.07
5986 14496 3.493699 CCTCCGTTCCAAAGTAAGTGTCA 60.494 47.826 0.00 0.00 0.00 3.58
5988 14498 2.224450 CCCTCCGTTCCAAAGTAAGTGT 60.224 50.000 0.00 0.00 0.00 3.55
6026 14536 8.208224 TCCGTATGTAGTCCATATTGAAATGTT 58.792 33.333 0.00 0.00 38.29 2.71
6028 14538 7.872993 AGTCCGTATGTAGTCCATATTGAAATG 59.127 37.037 0.00 0.00 38.29 2.32
6042 14552 7.277760 TGTTCATTCATTTCAGTCCGTATGTAG 59.722 37.037 0.00 0.00 0.00 2.74
6154 14825 3.315470 CACTAGCAGGCTGTCTAATCGTA 59.685 47.826 17.16 0.00 0.00 3.43
6155 14826 2.099921 CACTAGCAGGCTGTCTAATCGT 59.900 50.000 17.16 9.30 0.00 3.73
6156 14827 2.359214 TCACTAGCAGGCTGTCTAATCG 59.641 50.000 17.16 8.74 0.00 3.34
6157 14828 4.280677 AGATCACTAGCAGGCTGTCTAATC 59.719 45.833 17.16 15.42 0.00 1.75
6158 14829 4.222336 AGATCACTAGCAGGCTGTCTAAT 58.778 43.478 17.16 5.30 0.00 1.73
6159 14830 3.636679 AGATCACTAGCAGGCTGTCTAA 58.363 45.455 17.16 4.18 0.00 2.10
6160 14831 3.304911 AGATCACTAGCAGGCTGTCTA 57.695 47.619 17.16 15.76 0.00 2.59
6161 14832 2.157640 AGATCACTAGCAGGCTGTCT 57.842 50.000 17.16 15.47 0.00 3.41
6162 14833 2.977772 AAGATCACTAGCAGGCTGTC 57.022 50.000 17.16 8.57 0.00 3.51
6163 14834 3.099905 TGTAAGATCACTAGCAGGCTGT 58.900 45.455 17.16 5.61 0.00 4.40
6164 14835 3.808466 TGTAAGATCACTAGCAGGCTG 57.192 47.619 10.94 10.94 0.00 4.85
6165 14836 3.708631 ACATGTAAGATCACTAGCAGGCT 59.291 43.478 0.00 0.00 0.00 4.58
6166 14837 3.806521 CACATGTAAGATCACTAGCAGGC 59.193 47.826 0.00 0.00 0.00 4.85
6167 14838 3.806521 GCACATGTAAGATCACTAGCAGG 59.193 47.826 0.00 0.00 0.00 4.85
6168 14839 4.507021 CAGCACATGTAAGATCACTAGCAG 59.493 45.833 0.00 0.00 0.00 4.24
6169 14840 4.436332 CAGCACATGTAAGATCACTAGCA 58.564 43.478 0.00 0.00 0.00 3.49
6170 14841 3.806521 CCAGCACATGTAAGATCACTAGC 59.193 47.826 0.00 0.00 0.00 3.42
6260 14931 9.847224 AGGAACAAAACAAGAATAAGACTCTAA 57.153 29.630 0.00 0.00 0.00 2.10
6261 14932 9.273016 CAGGAACAAAACAAGAATAAGACTCTA 57.727 33.333 0.00 0.00 0.00 2.43
6262 14933 7.255277 GCAGGAACAAAACAAGAATAAGACTCT 60.255 37.037 0.00 0.00 0.00 3.24
6263 14934 6.858478 GCAGGAACAAAACAAGAATAAGACTC 59.142 38.462 0.00 0.00 0.00 3.36
6264 14935 6.321181 TGCAGGAACAAAACAAGAATAAGACT 59.679 34.615 0.00 0.00 0.00 3.24
6265 14936 6.503524 TGCAGGAACAAAACAAGAATAAGAC 58.496 36.000 0.00 0.00 0.00 3.01
6266 14937 6.707440 TGCAGGAACAAAACAAGAATAAGA 57.293 33.333 0.00 0.00 0.00 2.10
6267 14938 7.951530 ATTGCAGGAACAAAACAAGAATAAG 57.048 32.000 0.00 0.00 32.27 1.73
6268 14939 9.995003 AATATTGCAGGAACAAAACAAGAATAA 57.005 25.926 0.00 0.00 32.27 1.40
6269 14940 9.638239 GAATATTGCAGGAACAAAACAAGAATA 57.362 29.630 0.00 0.00 32.27 1.75
6390 15061 3.762407 TCATGGTCGTCTTCAAGGAAA 57.238 42.857 0.00 0.00 0.00 3.13
6406 15077 5.634439 CCTTCTTTATCTGCTCGAGATCATG 59.366 44.000 18.75 0.37 40.88 3.07
6476 15148 6.945636 TGAGGAAAATAGGTAGAGGAAACA 57.054 37.500 0.00 0.00 0.00 2.83
6592 15264 6.045072 TCGTATGTCTTTTAACCACCTCAT 57.955 37.500 0.00 0.00 0.00 2.90
6597 15269 5.169295 AGCTCTCGTATGTCTTTTAACCAC 58.831 41.667 0.00 0.00 0.00 4.16
6657 15329 2.983229 AGTGTGCAAGATGACAGATCC 58.017 47.619 0.00 0.00 0.00 3.36
6710 15382 3.449322 ACTAAATATTATTGCGCCGCG 57.551 42.857 8.83 8.83 0.00 6.46
6711 15383 6.345920 AGATACTAAATATTATTGCGCCGC 57.654 37.500 4.18 0.00 0.00 6.53
6712 15384 7.216317 GCAAAGATACTAAATATTATTGCGCCG 59.784 37.037 4.18 0.00 36.37 6.46
6762 15437 5.907197 ATATAATTACGTGTGAGCACAGC 57.093 39.130 3.12 0.00 45.50 4.40
6828 15503 1.704641 ACTATAGCCATGCTGTCGGA 58.295 50.000 0.00 0.00 40.10 4.55
6996 15672 3.658757 TTGGTAGCATTCCTGTTTTGC 57.341 42.857 0.00 0.00 36.63 3.68
7099 15781 8.484799 CGAAATTGATCATGGCTAAAATCATTG 58.515 33.333 0.00 0.00 0.00 2.82
7140 15826 9.930693 CCAAAAAGAGACTAGTGAATTAGTACT 57.069 33.333 0.00 0.00 34.13 2.73
7141 15827 9.708092 ACCAAAAAGAGACTAGTGAATTAGTAC 57.292 33.333 0.00 0.00 34.13 2.73
7143 15829 9.057089 CAACCAAAAAGAGACTAGTGAATTAGT 57.943 33.333 0.00 0.00 36.61 2.24
7202 15888 4.699257 GCAAAGAATCTTGTCCAGTCAGAT 59.301 41.667 0.00 0.00 0.00 2.90
7235 15921 1.201429 TTCAGGGAGGAGGTTGGCTC 61.201 60.000 0.00 0.00 0.00 4.70
7482 16169 7.824289 CAGGAACCTTCTGTTACATTTCTGATA 59.176 37.037 0.00 0.00 40.58 2.15
7498 16185 5.238868 GTGGAAGTAAGTTTCAGGAACCTTC 59.761 44.000 0.00 2.00 39.13 3.46
7503 16190 5.130477 AGTGAGTGGAAGTAAGTTTCAGGAA 59.870 40.000 0.00 0.00 0.00 3.36
7542 16229 9.845214 AGGGAGTAGTACATATGAAAATATCCT 57.155 33.333 10.38 4.59 0.00 3.24
7562 16249 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
7563 16250 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
7564 16251 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
7565 16252 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
7594 16281 8.400947 CGAATGTGATACTCCATTTGAAATCTT 58.599 33.333 0.00 0.00 35.38 2.40
7596 16283 7.012327 TCCGAATGTGATACTCCATTTGAAATC 59.988 37.037 0.00 0.00 35.38 2.17
7597 16284 6.828273 TCCGAATGTGATACTCCATTTGAAAT 59.172 34.615 0.00 0.00 35.38 2.17
7598 16285 6.176896 TCCGAATGTGATACTCCATTTGAAA 58.823 36.000 0.00 0.00 35.38 2.69
7599 16286 5.739959 TCCGAATGTGATACTCCATTTGAA 58.260 37.500 0.00 0.00 35.38 2.69
7601 16288 5.528690 ACATCCGAATGTGATACTCCATTTG 59.471 40.000 0.00 0.00 44.51 2.32
7602 16289 5.684704 ACATCCGAATGTGATACTCCATTT 58.315 37.500 0.00 0.00 44.51 2.32
7603 16290 5.296151 ACATCCGAATGTGATACTCCATT 57.704 39.130 0.00 0.00 44.51 3.16
7604 16291 4.963318 ACATCCGAATGTGATACTCCAT 57.037 40.909 0.00 0.00 44.51 3.41
7606 16293 5.784177 ACATACATCCGAATGTGATACTCC 58.216 41.667 0.00 0.00 45.72 3.85
7608 16295 7.230712 TGTCTACATACATCCGAATGTGATACT 59.769 37.037 0.00 0.00 45.72 2.12
7611 16298 6.405278 TGTCTACATACATCCGAATGTGAT 57.595 37.500 0.00 0.00 45.72 3.06
7612 16299 5.845391 TGTCTACATACATCCGAATGTGA 57.155 39.130 0.00 0.00 45.72 3.58
7613 16300 8.763049 AATATGTCTACATACATCCGAATGTG 57.237 34.615 0.00 0.00 45.72 3.21
7639 16326 9.712305 CCTCTCTCTCAAAATTTTACACTCTAA 57.288 33.333 2.44 0.00 0.00 2.10
7640 16327 8.314751 CCCTCTCTCTCAAAATTTTACACTCTA 58.685 37.037 2.44 0.00 0.00 2.43
7641 16328 7.016661 TCCCTCTCTCTCAAAATTTTACACTCT 59.983 37.037 2.44 0.00 0.00 3.24
7642 16329 7.162082 TCCCTCTCTCTCAAAATTTTACACTC 58.838 38.462 2.44 0.00 0.00 3.51
7643 16330 7.079451 TCCCTCTCTCTCAAAATTTTACACT 57.921 36.000 2.44 0.00 0.00 3.55
7644 16331 6.372937 CCTCCCTCTCTCTCAAAATTTTACAC 59.627 42.308 2.44 0.00 0.00 2.90
7645 16332 6.476378 CCTCCCTCTCTCTCAAAATTTTACA 58.524 40.000 2.44 0.00 0.00 2.41
7646 16333 5.883115 CCCTCCCTCTCTCTCAAAATTTTAC 59.117 44.000 2.44 0.00 0.00 2.01
7647 16334 5.790618 TCCCTCCCTCTCTCTCAAAATTTTA 59.209 40.000 2.44 0.00 0.00 1.52
7648 16335 4.603610 TCCCTCCCTCTCTCTCAAAATTTT 59.396 41.667 0.00 0.00 0.00 1.82
7649 16336 4.179133 TCCCTCCCTCTCTCTCAAAATTT 58.821 43.478 0.00 0.00 0.00 1.82
7650 16337 3.779738 CTCCCTCCCTCTCTCTCAAAATT 59.220 47.826 0.00 0.00 0.00 1.82
7651 16338 3.383223 CTCCCTCCCTCTCTCTCAAAAT 58.617 50.000 0.00 0.00 0.00 1.82
7652 16339 2.560841 CCTCCCTCCCTCTCTCTCAAAA 60.561 54.545 0.00 0.00 0.00 2.44
7653 16340 1.007721 CCTCCCTCCCTCTCTCTCAAA 59.992 57.143 0.00 0.00 0.00 2.69
7654 16341 0.633921 CCTCCCTCCCTCTCTCTCAA 59.366 60.000 0.00 0.00 0.00 3.02
7655 16342 1.292941 CCCTCCCTCCCTCTCTCTCA 61.293 65.000 0.00 0.00 0.00 3.27
7656 16343 1.541672 CCCTCCCTCCCTCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
7657 16344 2.018086 CCCCTCCCTCCCTCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
7658 16345 2.612251 CCCCTCCCTCCCTCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
7659 16346 3.039526 CCCCCTCCCTCCCTCTCT 61.040 72.222 0.00 0.00 0.00 3.10
7660 16347 2.613576 CTTCCCCCTCCCTCCCTCTC 62.614 70.000 0.00 0.00 0.00 3.20
7661 16348 2.543637 TTCCCCCTCCCTCCCTCT 60.544 66.667 0.00 0.00 0.00 3.69
7662 16349 2.040359 CTTCCCCCTCCCTCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
7663 16350 3.711782 CCTTCCCCCTCCCTCCCT 61.712 72.222 0.00 0.00 0.00 4.20
7664 16351 4.845307 CCCTTCCCCCTCCCTCCC 62.845 77.778 0.00 0.00 0.00 4.30
7665 16352 3.707189 TCCCTTCCCCCTCCCTCC 61.707 72.222 0.00 0.00 0.00 4.30
7666 16353 2.040359 CTCCCTTCCCCCTCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
7667 16354 3.711782 CCTCCCTTCCCCCTCCCT 61.712 72.222 0.00 0.00 0.00 4.20
7668 16355 4.845307 CCCTCCCTTCCCCCTCCC 62.845 77.778 0.00 0.00 0.00 4.30
7669 16356 3.707189 TCCCTCCCTTCCCCCTCC 61.707 72.222 0.00 0.00 0.00 4.30
7670 16357 2.040359 CTCCCTCCCTTCCCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
7671 16358 3.711782 CCTCCCTCCCTTCCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
7672 16359 4.845307 CCCTCCCTCCCTTCCCCC 62.845 77.778 0.00 0.00 0.00 5.40
7673 16360 3.707189 TCCCTCCCTCCCTTCCCC 61.707 72.222 0.00 0.00 0.00 4.81
7674 16361 2.040359 CTCCCTCCCTCCCTTCCC 60.040 72.222 0.00 0.00 0.00 3.97
7675 16362 2.040359 CCTCCCTCCCTCCCTTCC 60.040 72.222 0.00 0.00 0.00 3.46
7676 16363 2.040359 CCCTCCCTCCCTCCCTTC 60.040 72.222 0.00 0.00 0.00 3.46
7677 16364 2.543637 TCCCTCCCTCCCTCCCTT 60.544 66.667 0.00 0.00 0.00 3.95
7678 16365 2.541709 TACTCCCTCCCTCCCTCCCT 62.542 65.000 0.00 0.00 0.00 4.20
7679 16366 1.381089 ATACTCCCTCCCTCCCTCCC 61.381 65.000 0.00 0.00 0.00 4.30
7680 16367 0.568697 AATACTCCCTCCCTCCCTCC 59.431 60.000 0.00 0.00 0.00 4.30
7681 16368 2.498473 AAATACTCCCTCCCTCCCTC 57.502 55.000 0.00 0.00 0.00 4.30
7682 16369 2.993604 AAAATACTCCCTCCCTCCCT 57.006 50.000 0.00 0.00 0.00 4.20
7687 16374 6.803366 TTACACTCTAAAATACTCCCTCCC 57.197 41.667 0.00 0.00 0.00 4.30
7698 16385 7.177921 TCCCTCTCGAGATTTTACACTCTAAAA 59.822 37.037 17.03 0.00 0.00 1.52
7700 16387 6.185511 TCCCTCTCGAGATTTTACACTCTAA 58.814 40.000 17.03 0.00 0.00 2.10
7703 16390 4.202070 CCTCCCTCTCGAGATTTTACACTC 60.202 50.000 17.03 0.00 30.97 3.51
7705 16392 3.181474 CCCTCCCTCTCGAGATTTTACAC 60.181 52.174 17.03 0.00 30.97 2.90
7706 16393 3.031736 CCCTCCCTCTCGAGATTTTACA 58.968 50.000 17.03 0.00 30.97 2.41
7708 16395 3.567397 CTCCCTCCCTCTCGAGATTTTA 58.433 50.000 17.03 1.23 30.97 1.52
7709 16396 2.393646 CTCCCTCCCTCTCGAGATTTT 58.606 52.381 17.03 0.00 30.97 1.82
7710 16397 1.412361 CCTCCCTCCCTCTCGAGATTT 60.412 57.143 17.03 0.00 30.97 2.17
7711 16398 0.187361 CCTCCCTCCCTCTCGAGATT 59.813 60.000 17.03 0.00 30.97 2.40
7713 16400 2.387772 CCCTCCCTCCCTCTCGAGA 61.388 68.421 15.70 15.70 30.97 4.04
7714 16401 2.197324 CCCTCCCTCCCTCTCGAG 59.803 72.222 5.93 5.93 0.00 4.04
7716 16403 2.197324 CTCCCTCCCTCCCTCTCG 59.803 72.222 0.00 0.00 0.00 4.04
7717 16404 2.612251 CCTCCCTCCCTCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
7718 16405 3.039526 CCCTCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
7719 16406 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
7720 16407 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
7721 16408 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
7722 16409 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
7723 16410 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
7725 16412 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
7726 16413 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
7727 16414 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
7729 16416 3.036959 TCTCCCTCCCTCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
7730 16417 2.015726 TCTCTCCCTCCCTCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
7731 16418 0.996762 TCTCTCTCCCTCCCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
7732 16419 0.998945 CTCTCTCTCCCTCCCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
7733 16420 0.996762 TCTCTCTCTCCCTCCCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
7734 16421 0.478507 CTCTCTCTCTCCCTCCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
7735 16422 1.421646 CTCTCTCTCTCTCCCTCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
7736 16423 1.275002 ACTCTCTCTCTCTCCCTCCCT 60.275 57.143 0.00 0.00 0.00 4.20
7737 16424 1.143073 GACTCTCTCTCTCTCCCTCCC 59.857 61.905 0.00 0.00 0.00 4.30
7739 16426 2.746472 GCTGACTCTCTCTCTCTCCCTC 60.746 59.091 0.00 0.00 0.00 4.30
7741 16428 1.680338 GCTGACTCTCTCTCTCTCCC 58.320 60.000 0.00 0.00 0.00 4.30
7743 16430 2.024176 ACGCTGACTCTCTCTCTCTC 57.976 55.000 0.00 0.00 0.00 3.20
7745 16432 3.874543 TCAATACGCTGACTCTCTCTCTC 59.125 47.826 0.00 0.00 0.00 3.20
7747 16434 4.829064 ATCAATACGCTGACTCTCTCTC 57.171 45.455 0.00 0.00 0.00 3.20
7750 16437 4.158579 TGTCAATCAATACGCTGACTCTCT 59.841 41.667 3.06 0.00 39.15 3.10
7751 16438 4.424626 TGTCAATCAATACGCTGACTCTC 58.575 43.478 3.06 0.00 39.15 3.20
7792 16863 5.104235 AGCCTTATAGGTACATTTTCCCGTT 60.104 40.000 0.00 0.00 37.80 4.44
7817 16888 3.891366 GACCCCTCATCCAATATTGTTGG 59.109 47.826 14.25 5.86 40.87 3.77
7846 16918 9.454585 CACATTATTTTCAGATCGCATACAAAT 57.545 29.630 0.00 0.00 0.00 2.32
7866 16938 3.055747 TCATAACACCACTCGCCACATTA 60.056 43.478 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.