Multiple sequence alignment - TraesCS7B01G155900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G155900 chr7B 100.000 3522 0 0 1 3522 210861780 210858259 0.000000e+00 6505
1 TraesCS7B01G155900 chr7A 91.061 1734 85 25 1679 3376 249592028 249590329 0.000000e+00 2279
2 TraesCS7B01G155900 chr7A 92.366 1179 51 20 525 1678 249593223 249592059 0.000000e+00 1642
3 TraesCS7B01G155900 chr7A 95.600 500 22 0 1 500 249593792 249593293 0.000000e+00 802
4 TraesCS7B01G155900 chr7D 91.210 1570 72 19 1869 3424 234804095 234802578 0.000000e+00 2074
5 TraesCS7B01G155900 chr7D 90.684 1170 57 11 525 1678 234805547 234804414 0.000000e+00 1509
6 TraesCS7B01G155900 chr7D 97.000 500 15 0 1 500 234806116 234805617 0.000000e+00 841
7 TraesCS7B01G155900 chr7D 82.843 204 10 9 1679 1859 234804383 234804182 3.640000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G155900 chr7B 210858259 210861780 3521 True 6505.000000 6505 100.00000 1 3522 1 chr7B.!!$R1 3521
1 TraesCS7B01G155900 chr7A 249590329 249593792 3463 True 1574.333333 2279 93.00900 1 3376 3 chr7A.!!$R1 3375
2 TraesCS7B01G155900 chr7D 234802578 234806116 3538 True 1145.750000 2074 90.43425 1 3424 4 chr7D.!!$R1 3423

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 570 0.178967 TGTCCAGGAATGCTTTGCCA 60.179 50.0 0.00 0.0 0.0 4.92 F
517 571 0.244721 GTCCAGGAATGCTTTGCCAC 59.755 55.0 0.00 0.0 0.0 5.01 F
518 572 0.178967 TCCAGGAATGCTTTGCCACA 60.179 50.0 0.00 0.0 0.0 4.17 F
519 573 0.245539 CCAGGAATGCTTTGCCACAG 59.754 55.0 0.00 0.0 0.0 3.66 F
1792 1928 0.107165 GGGGTCCATGGTTACTGCTC 60.107 60.0 12.58 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 1841 0.533951 CCCAAATTCCAAGCCAGAGC 59.466 55.0 0.00 0.0 40.32 4.09 R
1729 1842 0.533951 GCCCAAATTCCAAGCCAGAG 59.466 55.0 0.00 0.0 0.00 3.35 R
1775 1911 0.535335 TCGAGCAGTAACCATGGACC 59.465 55.0 21.47 5.3 0.00 4.46 R
2113 2326 1.016415 TCCTACCCTCTAAGGCCAGT 58.984 55.0 5.01 0.0 32.73 4.00 R
3494 3726 0.181114 ACTGACACAGAAGCTTGGCA 59.819 50.0 2.10 0.0 35.18 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 1.199624 GAAAACCACACTTGCAAGCG 58.800 50.000 26.27 19.55 0.00 4.68
248 249 3.973973 TCCAAGTGGATTACCTGATAGGG 59.026 47.826 0.00 0.00 38.46 3.53
252 253 3.210074 AGTGGATTACCTGATAGGGTCCT 59.790 47.826 13.60 0.00 40.58 3.85
256 257 2.653234 TACCTGATAGGGTCCTCGTC 57.347 55.000 0.00 0.00 40.58 4.20
376 377 2.673833 AGCTGTAAACTACGTGCTGAC 58.326 47.619 0.00 0.00 38.82 3.51
476 477 9.653287 CGAATTATCACCAGAAATATAGCCTTA 57.347 33.333 0.00 0.00 0.00 2.69
500 501 2.059541 GTTTCAGTCAGGTACGCTGTC 58.940 52.381 10.08 6.06 0.00 3.51
516 570 0.178967 TGTCCAGGAATGCTTTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
517 571 0.244721 GTCCAGGAATGCTTTGCCAC 59.755 55.000 0.00 0.00 0.00 5.01
518 572 0.178967 TCCAGGAATGCTTTGCCACA 60.179 50.000 0.00 0.00 0.00 4.17
519 573 0.245539 CCAGGAATGCTTTGCCACAG 59.754 55.000 0.00 0.00 0.00 3.66
520 574 0.245539 CAGGAATGCTTTGCCACAGG 59.754 55.000 0.00 0.00 0.00 4.00
562 616 8.058847 ACCTGTATTATCACCCACATTGTTATT 58.941 33.333 0.00 0.00 0.00 1.40
583 637 2.159099 TCTGTCAGCCGAATAAGCGAAT 60.159 45.455 0.00 0.00 34.64 3.34
608 662 6.495181 TGGCTCCATGTTTTCTAAAACCAATA 59.505 34.615 14.08 0.00 45.82 1.90
614 668 8.364142 CCATGTTTTCTAAAACCAATACCTTCA 58.636 33.333 14.08 0.00 45.82 3.02
633 687 2.489329 TCATGTTTTGCAAGCTAGAGCC 59.511 45.455 0.00 0.00 43.38 4.70
638 692 4.141959 TGTTTTGCAAGCTAGAGCCTTTTT 60.142 37.500 0.00 0.00 43.38 1.94
707 774 4.500837 CGTTGAGTCGAGATCTTTGTATGG 59.499 45.833 0.00 0.00 0.00 2.74
712 779 6.071334 TGAGTCGAGATCTTTGTATGGTTCTT 60.071 38.462 0.00 0.00 0.00 2.52
713 780 6.702329 AGTCGAGATCTTTGTATGGTTCTTT 58.298 36.000 0.00 0.00 0.00 2.52
714 781 7.162082 AGTCGAGATCTTTGTATGGTTCTTTT 58.838 34.615 0.00 0.00 0.00 2.27
715 782 7.661847 AGTCGAGATCTTTGTATGGTTCTTTTT 59.338 33.333 0.00 0.00 0.00 1.94
743 811 4.887071 TGTGTGTGGTCTAAAAGAAATGCT 59.113 37.500 0.00 0.00 0.00 3.79
848 917 5.836347 TGCACTACACTAGAAGAGCATATG 58.164 41.667 0.00 0.00 0.00 1.78
849 918 5.594317 TGCACTACACTAGAAGAGCATATGA 59.406 40.000 6.97 0.00 0.00 2.15
857 926 7.497249 ACACTAGAAGAGCATATGACATTTTCC 59.503 37.037 6.97 0.00 0.00 3.13
877 946 5.055642 TCCTGTACTAGACGAACACATTG 57.944 43.478 0.00 0.00 0.00 2.82
888 957 3.625313 ACGAACACATTGTCACAACATGA 59.375 39.130 9.38 0.00 34.73 3.07
889 958 4.275689 ACGAACACATTGTCACAACATGAT 59.724 37.500 9.38 0.00 40.28 2.45
895 964 4.696877 ACATTGTCACAACATGATGATCGT 59.303 37.500 10.29 0.00 40.28 3.73
925 995 0.386731 CCGCGTGGACAAATTTGGAC 60.387 55.000 21.74 13.96 37.49 4.02
1115 1187 2.100631 CAAGATCGTGCGGACCACC 61.101 63.158 0.00 0.00 41.53 4.61
1175 1247 4.753662 ACGCGAGCCCACCCTCTA 62.754 66.667 15.93 0.00 0.00 2.43
1238 1310 3.950254 CCGATCGACCCCGTCTCG 61.950 72.222 18.66 0.00 39.64 4.04
1239 1311 3.200593 CGATCGACCCCGTCTCGT 61.201 66.667 10.26 0.00 37.31 4.18
1276 1350 0.831307 ATCCGGTAGCTGTTCTTCCC 59.169 55.000 0.00 0.00 0.00 3.97
1277 1351 1.221021 CCGGTAGCTGTTCTTCCCC 59.779 63.158 0.00 0.00 0.00 4.81
1518 1599 1.478510 GTCCTCTTCTTCCTCATCGCA 59.521 52.381 0.00 0.00 0.00 5.10
1554 1635 4.077184 CTCGTAAGCCCGCACCCA 62.077 66.667 0.00 0.00 37.18 4.51
1637 1720 2.363680 GCACCTGCTAGCAAGAGATCTA 59.636 50.000 20.14 0.00 38.21 1.98
1638 1721 3.552684 GCACCTGCTAGCAAGAGATCTAG 60.553 52.174 20.14 4.14 38.21 2.43
1639 1722 3.636300 CACCTGCTAGCAAGAGATCTAGT 59.364 47.826 20.14 3.27 35.80 2.57
1717 1830 5.968528 CGTAGGAGAGATGGTAGCTAATT 57.031 43.478 0.00 0.00 0.00 1.40
1718 1831 6.334102 CGTAGGAGAGATGGTAGCTAATTT 57.666 41.667 0.00 0.00 0.00 1.82
1719 1832 7.450124 CGTAGGAGAGATGGTAGCTAATTTA 57.550 40.000 0.00 0.00 0.00 1.40
1720 1833 7.883217 CGTAGGAGAGATGGTAGCTAATTTAA 58.117 38.462 0.00 0.00 0.00 1.52
1723 1836 7.164803 AGGAGAGATGGTAGCTAATTTAATGC 58.835 38.462 0.00 0.00 0.00 3.56
1726 1839 8.388484 AGAGATGGTAGCTAATTTAATGCAAG 57.612 34.615 0.00 0.00 0.00 4.01
1728 1841 7.934457 AGATGGTAGCTAATTTAATGCAAGTG 58.066 34.615 0.00 0.00 0.00 3.16
1729 1842 5.890334 TGGTAGCTAATTTAATGCAAGTGC 58.110 37.500 0.00 0.00 42.50 4.40
1730 1843 5.652014 TGGTAGCTAATTTAATGCAAGTGCT 59.348 36.000 4.69 0.00 42.66 4.40
1775 1911 3.213506 TGAATCGAATGTAGGCATTGGG 58.786 45.455 0.00 0.00 44.61 4.12
1792 1928 0.107165 GGGGTCCATGGTTACTGCTC 60.107 60.000 12.58 0.00 0.00 4.26
1795 1931 1.471676 GGTCCATGGTTACTGCTCGAG 60.472 57.143 12.58 8.45 0.00 4.04
1825 1961 8.250332 TCCAACTATGCTATTCAAATTGAAACC 58.750 33.333 12.75 4.86 40.12 3.27
1854 1990 0.109504 GCTCGTCTGGAGACACAGTC 60.110 60.000 7.54 0.00 46.23 3.51
1857 1993 3.275143 CTCGTCTGGAGACACAGTCTAT 58.725 50.000 7.54 0.00 46.23 1.98
1858 1994 4.443621 CTCGTCTGGAGACACAGTCTATA 58.556 47.826 7.54 0.00 46.23 1.31
1859 1995 4.190001 TCGTCTGGAGACACAGTCTATAC 58.810 47.826 7.54 0.00 43.53 1.47
1976 2189 3.876914 TGGAACAAGTGTAGTCTGCTTTG 59.123 43.478 4.91 4.91 31.92 2.77
2113 2326 2.842496 AGAAGCCTGATCAAGATGACCA 59.158 45.455 0.00 0.00 0.00 4.02
2212 2427 6.341316 TGTACATTCTGTAGAGGCTCATTTC 58.659 40.000 18.26 4.44 32.84 2.17
2271 2486 1.286880 GCTTTTGACATGCTGCCGT 59.713 52.632 0.00 0.00 0.00 5.68
2370 2585 1.299316 CAAACAAGCTGCCACACGG 60.299 57.895 0.00 0.00 0.00 4.94
2380 2595 1.281656 GCCACACGGTGTTAAGTGC 59.718 57.895 11.82 5.95 41.72 4.40
2440 2655 8.947940 GCATGACGTTTTCTTCATTTATATCAC 58.052 33.333 0.00 0.00 36.81 3.06
2441 2656 9.986833 CATGACGTTTTCTTCATTTATATCACA 57.013 29.630 0.00 0.00 36.81 3.58
2444 2659 9.438291 GACGTTTTCTTCATTTATATCACATGG 57.562 33.333 0.00 0.00 0.00 3.66
2460 2675 4.554036 GGCATCCCCACGAGCTCC 62.554 72.222 8.47 0.00 0.00 4.70
2525 2740 1.346395 TGTGTGCCGAAGATTACCACT 59.654 47.619 0.00 0.00 0.00 4.00
2536 2751 6.264744 CCGAAGATTACCACTATTGAGGTCTA 59.735 42.308 0.00 0.00 38.17 2.59
2570 2785 6.037786 TCTGACGGTAATCTTGTTGAGAAT 57.962 37.500 0.00 0.00 38.06 2.40
2599 2815 3.870633 ATGGTTCTAGTCACTCGGAAC 57.129 47.619 12.59 12.59 37.79 3.62
2618 2834 6.013984 TCGGAACCTTTGAAACCTAGATAAGT 60.014 38.462 0.00 0.00 0.00 2.24
2619 2835 6.313164 CGGAACCTTTGAAACCTAGATAAGTC 59.687 42.308 0.00 0.00 0.00 3.01
2642 2858 9.053840 AGTCATGCATCTTATTTTAGTCATCAG 57.946 33.333 0.00 0.00 0.00 2.90
2667 2883 4.788075 TGATGATGGGTCCTCCTTAAAGAA 59.212 41.667 0.00 0.00 36.20 2.52
2713 2929 9.757227 ATCATAGAACAACTGAAGTTATAGCTC 57.243 33.333 0.00 0.00 36.32 4.09
2714 2930 8.972127 TCATAGAACAACTGAAGTTATAGCTCT 58.028 33.333 0.00 0.00 36.32 4.09
2715 2931 9.029243 CATAGAACAACTGAAGTTATAGCTCTG 57.971 37.037 0.00 0.00 36.32 3.35
2716 2932 6.402222 AGAACAACTGAAGTTATAGCTCTGG 58.598 40.000 0.00 0.00 36.32 3.86
2769 2989 8.771766 CAGATAAATGTCTCACAATATCCACTG 58.228 37.037 8.25 0.00 34.34 3.66
2880 3100 1.078285 GCATTGGGCATTTGGGTGG 60.078 57.895 0.00 0.00 43.97 4.61
2898 3122 5.427157 TGGGTGGCATAAGACTTCACTATTA 59.573 40.000 0.00 0.00 0.00 0.98
2899 3123 5.992217 GGGTGGCATAAGACTTCACTATTAG 59.008 44.000 0.00 0.00 0.00 1.73
2900 3124 6.408206 GGGTGGCATAAGACTTCACTATTAGT 60.408 42.308 0.00 0.00 0.00 2.24
2901 3125 7.048512 GGTGGCATAAGACTTCACTATTAGTT 58.951 38.462 0.00 0.00 0.00 2.24
2902 3126 8.202137 GGTGGCATAAGACTTCACTATTAGTTA 58.798 37.037 0.00 0.00 0.00 2.24
2903 3127 9.765795 GTGGCATAAGACTTCACTATTAGTTAT 57.234 33.333 0.00 0.00 0.00 1.89
2904 3128 9.982651 TGGCATAAGACTTCACTATTAGTTATC 57.017 33.333 0.00 0.00 0.00 1.75
2910 3134 8.760980 AGACTTCACTATTAGTTATCTGAGCT 57.239 34.615 0.00 0.00 0.00 4.09
2911 3135 9.854668 AGACTTCACTATTAGTTATCTGAGCTA 57.145 33.333 0.00 0.00 0.00 3.32
2912 3136 9.887406 GACTTCACTATTAGTTATCTGAGCTAC 57.113 37.037 0.00 0.00 0.00 3.58
2913 3137 8.852135 ACTTCACTATTAGTTATCTGAGCTACC 58.148 37.037 0.00 0.00 0.00 3.18
2914 3138 7.762588 TCACTATTAGTTATCTGAGCTACCC 57.237 40.000 0.00 0.00 0.00 3.69
2915 3139 7.527796 TCACTATTAGTTATCTGAGCTACCCT 58.472 38.462 0.00 0.00 0.00 4.34
2916 3140 8.666821 TCACTATTAGTTATCTGAGCTACCCTA 58.333 37.037 0.00 0.00 0.00 3.53
2917 3141 9.298250 CACTATTAGTTATCTGAGCTACCCTAA 57.702 37.037 0.00 0.00 0.00 2.69
2918 3142 9.878737 ACTATTAGTTATCTGAGCTACCCTAAA 57.121 33.333 0.00 0.00 0.00 1.85
2984 3208 6.111382 TGAACCTATGATTCTCTTTGAGCAG 58.889 40.000 0.00 0.00 0.00 4.24
3019 3250 9.178758 GAAGGCCACTTAATAATAGGATAATGG 57.821 37.037 5.01 0.00 36.97 3.16
3067 3298 6.138761 GCTATTGGATTGAATCATCGTTCAC 58.861 40.000 7.56 0.00 37.80 3.18
3088 3319 7.094508 TCACAGTGTTTCTTAAAATGAGCAA 57.905 32.000 0.00 0.00 0.00 3.91
3203 3434 7.681259 TCTGGGATATCCATTGATCGATATT 57.319 36.000 23.27 0.00 46.01 1.28
3212 3443 6.830912 TCCATTGATCGATATTGGAGTTCTT 58.169 36.000 15.75 0.00 32.80 2.52
3213 3444 6.707608 TCCATTGATCGATATTGGAGTTCTTG 59.292 38.462 15.75 0.00 32.80 3.02
3230 3461 8.897752 GGAGTTCTTGCATATCTGAAATTTAGT 58.102 33.333 0.00 0.00 0.00 2.24
3233 3464 9.638300 GTTCTTGCATATCTGAAATTTAGTACG 57.362 33.333 0.00 0.00 0.00 3.67
3311 3542 3.117093 TGGGGTCTAATTTTTGTGTGGGA 60.117 43.478 0.00 0.00 0.00 4.37
3313 3544 4.345547 GGGGTCTAATTTTTGTGTGGGAAA 59.654 41.667 0.00 0.00 0.00 3.13
3315 3546 5.303333 GGGTCTAATTTTTGTGTGGGAAAGA 59.697 40.000 0.00 0.00 0.00 2.52
3360 3591 6.468972 AACCAGCATGATAAACCCCTATAT 57.531 37.500 0.00 0.00 39.69 0.86
3365 3596 8.328758 CCAGCATGATAAACCCCTATATCTAAA 58.671 37.037 0.00 0.00 39.69 1.85
3377 3608 7.572861 ACCCCTATATCTAAATGGTTCTTCTGT 59.427 37.037 0.00 0.00 0.00 3.41
3378 3609 7.880195 CCCCTATATCTAAATGGTTCTTCTGTG 59.120 40.741 0.00 0.00 0.00 3.66
3427 3659 7.607250 AGTATTGTGATACTAGATTGCTAGCC 58.393 38.462 13.29 0.00 45.12 3.93
3428 3660 6.678568 ATTGTGATACTAGATTGCTAGCCT 57.321 37.500 13.29 4.64 46.55 4.58
3429 3661 6.485830 TTGTGATACTAGATTGCTAGCCTT 57.514 37.500 13.29 0.00 46.55 4.35
3430 3662 5.847304 TGTGATACTAGATTGCTAGCCTTG 58.153 41.667 13.29 5.85 46.55 3.61
3431 3663 5.363868 TGTGATACTAGATTGCTAGCCTTGT 59.636 40.000 13.29 11.44 46.55 3.16
3432 3664 6.127054 TGTGATACTAGATTGCTAGCCTTGTT 60.127 38.462 13.29 0.00 46.55 2.83
3433 3665 6.763610 GTGATACTAGATTGCTAGCCTTGTTT 59.236 38.462 13.29 4.68 46.55 2.83
3434 3666 7.926555 GTGATACTAGATTGCTAGCCTTGTTTA 59.073 37.037 13.29 0.00 46.55 2.01
3435 3667 8.144478 TGATACTAGATTGCTAGCCTTGTTTAG 58.856 37.037 13.29 9.01 46.55 1.85
3436 3668 5.119694 ACTAGATTGCTAGCCTTGTTTAGC 58.880 41.667 13.29 0.00 46.55 3.09
3439 3671 1.821216 TGCTAGCCTTGTTTAGCACC 58.179 50.000 13.29 0.00 45.26 5.01
3440 3672 1.095600 GCTAGCCTTGTTTAGCACCC 58.904 55.000 2.29 0.00 41.45 4.61
3441 3673 1.613255 GCTAGCCTTGTTTAGCACCCA 60.613 52.381 2.29 0.00 41.45 4.51
3442 3674 2.945890 GCTAGCCTTGTTTAGCACCCAT 60.946 50.000 2.29 0.00 41.45 4.00
3443 3675 2.309136 AGCCTTGTTTAGCACCCATT 57.691 45.000 0.00 0.00 0.00 3.16
3444 3676 2.608623 AGCCTTGTTTAGCACCCATTT 58.391 42.857 0.00 0.00 0.00 2.32
3445 3677 2.972021 AGCCTTGTTTAGCACCCATTTT 59.028 40.909 0.00 0.00 0.00 1.82
3446 3678 3.006859 AGCCTTGTTTAGCACCCATTTTC 59.993 43.478 0.00 0.00 0.00 2.29
3447 3679 3.244044 GCCTTGTTTAGCACCCATTTTCA 60.244 43.478 0.00 0.00 0.00 2.69
3448 3680 4.563374 GCCTTGTTTAGCACCCATTTTCAT 60.563 41.667 0.00 0.00 0.00 2.57
3449 3681 5.550290 CCTTGTTTAGCACCCATTTTCATT 58.450 37.500 0.00 0.00 0.00 2.57
3450 3682 5.997129 CCTTGTTTAGCACCCATTTTCATTT 59.003 36.000 0.00 0.00 0.00 2.32
3451 3683 6.486320 CCTTGTTTAGCACCCATTTTCATTTT 59.514 34.615 0.00 0.00 0.00 1.82
3452 3684 7.013178 CCTTGTTTAGCACCCATTTTCATTTTT 59.987 33.333 0.00 0.00 0.00 1.94
3475 3707 9.757227 TTTTTATGTTACTTTGGAAGTGGAATG 57.243 29.630 3.70 0.00 42.84 2.67
3476 3708 8.472007 TTTATGTTACTTTGGAAGTGGAATGT 57.528 30.769 3.70 0.00 42.84 2.71
3477 3709 6.575162 ATGTTACTTTGGAAGTGGAATGTC 57.425 37.500 3.70 0.00 42.84 3.06
3478 3710 5.441500 TGTTACTTTGGAAGTGGAATGTCA 58.558 37.500 3.70 0.00 42.84 3.58
3479 3711 5.888724 TGTTACTTTGGAAGTGGAATGTCAA 59.111 36.000 3.70 0.00 42.84 3.18
3480 3712 6.378564 TGTTACTTTGGAAGTGGAATGTCAAA 59.621 34.615 3.70 0.00 42.84 2.69
3481 3713 5.930837 ACTTTGGAAGTGGAATGTCAAAA 57.069 34.783 0.00 0.00 41.01 2.44
3482 3714 5.660460 ACTTTGGAAGTGGAATGTCAAAAC 58.340 37.500 0.00 0.00 41.01 2.43
3483 3715 5.422012 ACTTTGGAAGTGGAATGTCAAAACT 59.578 36.000 0.00 0.00 41.01 2.66
3484 3716 5.930837 TTGGAAGTGGAATGTCAAAACTT 57.069 34.783 0.00 0.00 33.91 2.66
3485 3717 5.514274 TGGAAGTGGAATGTCAAAACTTC 57.486 39.130 5.50 5.50 43.80 3.01
3486 3718 4.952957 TGGAAGTGGAATGTCAAAACTTCA 59.047 37.500 13.92 0.87 45.46 3.02
3487 3719 5.598005 TGGAAGTGGAATGTCAAAACTTCAT 59.402 36.000 13.92 0.00 45.46 2.57
3488 3720 6.098124 TGGAAGTGGAATGTCAAAACTTCATT 59.902 34.615 13.92 0.00 45.46 2.57
3489 3721 6.986231 GGAAGTGGAATGTCAAAACTTCATTT 59.014 34.615 13.92 0.00 45.46 2.32
3490 3722 7.495606 GGAAGTGGAATGTCAAAACTTCATTTT 59.504 33.333 13.92 0.00 45.46 1.82
3491 3723 8.791327 AAGTGGAATGTCAAAACTTCATTTTT 57.209 26.923 0.00 0.00 38.50 1.94
3492 3724 9.883142 AAGTGGAATGTCAAAACTTCATTTTTA 57.117 25.926 0.00 0.00 38.50 1.52
3493 3725 9.883142 AGTGGAATGTCAAAACTTCATTTTTAA 57.117 25.926 0.00 0.00 38.50 1.52
3496 3728 9.597999 GGAATGTCAAAACTTCATTTTTAATGC 57.402 29.630 0.00 0.00 38.50 3.56
3497 3729 9.597999 GAATGTCAAAACTTCATTTTTAATGCC 57.402 29.630 0.00 0.00 38.50 4.40
3498 3730 8.674263 ATGTCAAAACTTCATTTTTAATGCCA 57.326 26.923 0.00 0.00 38.50 4.92
3499 3731 8.498054 TGTCAAAACTTCATTTTTAATGCCAA 57.502 26.923 0.00 0.00 38.50 4.52
3500 3732 8.610896 TGTCAAAACTTCATTTTTAATGCCAAG 58.389 29.630 0.00 0.00 38.50 3.61
3501 3733 7.587392 GTCAAAACTTCATTTTTAATGCCAAGC 59.413 33.333 0.00 0.00 38.50 4.01
3502 3734 7.498570 TCAAAACTTCATTTTTAATGCCAAGCT 59.501 29.630 0.00 0.00 38.50 3.74
3503 3735 7.806409 AAACTTCATTTTTAATGCCAAGCTT 57.194 28.000 0.00 0.00 0.00 3.74
3504 3736 7.425577 AACTTCATTTTTAATGCCAAGCTTC 57.574 32.000 0.00 0.00 0.00 3.86
3505 3737 6.762333 ACTTCATTTTTAATGCCAAGCTTCT 58.238 32.000 0.00 0.00 0.00 2.85
3506 3738 6.647895 ACTTCATTTTTAATGCCAAGCTTCTG 59.352 34.615 0.00 0.00 0.00 3.02
3507 3739 6.100404 TCATTTTTAATGCCAAGCTTCTGT 57.900 33.333 0.00 0.00 0.00 3.41
3508 3740 5.927689 TCATTTTTAATGCCAAGCTTCTGTG 59.072 36.000 0.00 0.00 0.00 3.66
3509 3741 4.935352 TTTTAATGCCAAGCTTCTGTGT 57.065 36.364 0.00 0.00 0.00 3.72
3510 3742 4.503741 TTTAATGCCAAGCTTCTGTGTC 57.496 40.909 0.00 0.00 0.00 3.67
3511 3743 1.985473 AATGCCAAGCTTCTGTGTCA 58.015 45.000 0.00 0.00 0.00 3.58
3512 3744 1.531423 ATGCCAAGCTTCTGTGTCAG 58.469 50.000 0.00 0.00 0.00 3.51
3513 3745 0.181114 TGCCAAGCTTCTGTGTCAGT 59.819 50.000 0.00 0.00 32.61 3.41
3514 3746 1.312815 GCCAAGCTTCTGTGTCAGTT 58.687 50.000 0.00 0.00 32.61 3.16
3515 3747 1.678101 GCCAAGCTTCTGTGTCAGTTT 59.322 47.619 0.00 0.00 32.61 2.66
3516 3748 2.542411 GCCAAGCTTCTGTGTCAGTTTG 60.542 50.000 0.00 0.00 32.61 2.93
3517 3749 2.945008 CCAAGCTTCTGTGTCAGTTTGA 59.055 45.455 0.00 0.00 32.61 2.69
3518 3750 3.567164 CCAAGCTTCTGTGTCAGTTTGAT 59.433 43.478 0.00 0.00 32.61 2.57
3519 3751 4.320057 CCAAGCTTCTGTGTCAGTTTGATC 60.320 45.833 0.00 0.00 32.61 2.92
3520 3752 4.348863 AGCTTCTGTGTCAGTTTGATCT 57.651 40.909 0.00 0.00 32.61 2.75
3521 3753 4.063689 AGCTTCTGTGTCAGTTTGATCTG 58.936 43.478 0.00 0.00 36.85 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 6.421801 GTGGTTTTCTCAAAGGAATGAATGTG 59.578 38.462 0.00 0.00 0.00 3.21
111 112 3.681417 GGCTTTTCTGTGAAATTGATGCC 59.319 43.478 0.00 0.00 0.00 4.40
248 249 2.014128 CTGGAGAGAAGAGACGAGGAC 58.986 57.143 0.00 0.00 0.00 3.85
252 253 3.636153 TGATCTGGAGAGAAGAGACGA 57.364 47.619 0.00 0.00 0.00 4.20
256 257 7.345422 TCTTTGTATGATCTGGAGAGAAGAG 57.655 40.000 0.00 0.00 0.00 2.85
366 367 3.242518 CTCAAAGAATCGTCAGCACGTA 58.757 45.455 0.00 0.00 46.76 3.57
370 371 2.462456 AGCTCAAAGAATCGTCAGCA 57.538 45.000 3.70 0.00 0.00 4.41
434 435 8.513774 GTGATAATTCGTTTTAGGTTTTACCCA 58.486 33.333 0.00 0.00 39.75 4.51
476 477 2.038557 AGCGTACCTGACTGAAACCAAT 59.961 45.455 0.00 0.00 0.00 3.16
500 501 0.245539 CTGTGGCAAAGCATTCCTGG 59.754 55.000 0.00 0.00 0.00 4.45
516 570 0.322277 CTGATTGCCTGTCAGCCTGT 60.322 55.000 0.00 0.00 36.95 4.00
517 571 0.035725 TCTGATTGCCTGTCAGCCTG 60.036 55.000 0.00 0.00 42.17 4.85
518 572 0.035630 GTCTGATTGCCTGTCAGCCT 60.036 55.000 0.00 0.00 42.17 4.58
519 573 1.028868 GGTCTGATTGCCTGTCAGCC 61.029 60.000 0.00 6.54 42.17 4.85
520 574 0.035630 AGGTCTGATTGCCTGTCAGC 60.036 55.000 0.00 0.00 42.17 4.26
521 575 1.735386 CAGGTCTGATTGCCTGTCAG 58.265 55.000 4.97 0.00 45.28 3.51
522 576 3.942351 CAGGTCTGATTGCCTGTCA 57.058 52.632 4.97 0.00 45.28 3.58
562 616 0.815095 TCGCTTATTCGGCTGACAGA 59.185 50.000 6.65 0.00 0.00 3.41
608 662 4.144297 TCTAGCTTGCAAAACATGAAGGT 58.856 39.130 0.00 0.00 34.03 3.50
614 668 2.800250 AGGCTCTAGCTTGCAAAACAT 58.200 42.857 0.00 0.00 41.70 2.71
638 692 6.487668 CACCAAATAGAACAGGATGCATATGA 59.512 38.462 16.21 0.00 42.53 2.15
680 747 3.917329 AAGATCTCGACTCAACGTTGA 57.083 42.857 28.07 28.07 34.81 3.18
714 781 6.576662 TCTTTTAGACCACACACACAAAAA 57.423 33.333 0.00 0.00 0.00 1.94
715 782 6.576662 TTCTTTTAGACCACACACACAAAA 57.423 33.333 0.00 0.00 0.00 2.44
717 784 6.559810 CATTTCTTTTAGACCACACACACAA 58.440 36.000 0.00 0.00 0.00 3.33
719 786 4.976116 GCATTTCTTTTAGACCACACACAC 59.024 41.667 0.00 0.00 0.00 3.82
721 788 5.438761 AGCATTTCTTTTAGACCACACAC 57.561 39.130 0.00 0.00 0.00 3.82
848 917 6.089150 GTGTTCGTCTAGTACAGGAAAATGTC 59.911 42.308 0.00 0.00 34.56 3.06
849 918 5.924825 GTGTTCGTCTAGTACAGGAAAATGT 59.075 40.000 0.00 0.00 37.19 2.71
857 926 5.342525 GTGACAATGTGTTCGTCTAGTACAG 59.657 44.000 0.00 0.00 30.67 2.74
983 1055 2.507339 AACCAAGTCCAAATTGTGCG 57.493 45.000 0.00 0.00 0.00 5.34
987 1059 4.379652 CCCTTCAAACCAAGTCCAAATTG 58.620 43.478 0.00 0.00 0.00 2.32
1050 1122 1.185618 GCAAGGGGAAGGAACCAACC 61.186 60.000 0.00 0.00 0.00 3.77
1051 1123 0.178961 AGCAAGGGGAAGGAACCAAC 60.179 55.000 0.00 0.00 0.00 3.77
1052 1124 0.178964 CAGCAAGGGGAAGGAACCAA 60.179 55.000 0.00 0.00 0.00 3.67
1053 1125 1.460255 CAGCAAGGGGAAGGAACCA 59.540 57.895 0.00 0.00 0.00 3.67
1054 1126 1.979155 GCAGCAAGGGGAAGGAACC 60.979 63.158 0.00 0.00 0.00 3.62
1055 1127 0.540597 AAGCAGCAAGGGGAAGGAAC 60.541 55.000 0.00 0.00 0.00 3.62
1058 1130 2.042831 CGAAGCAGCAAGGGGAAGG 61.043 63.158 0.00 0.00 0.00 3.46
1059 1131 1.003355 TCGAAGCAGCAAGGGGAAG 60.003 57.895 0.00 0.00 0.00 3.46
1276 1350 0.035439 AAGTATGGCTGGGTGAACGG 60.035 55.000 0.00 0.00 0.00 4.44
1277 1351 1.086696 CAAGTATGGCTGGGTGAACG 58.913 55.000 0.00 0.00 0.00 3.95
1554 1635 1.830408 CGGGGAGAGAAGGCGAGAT 60.830 63.158 0.00 0.00 0.00 2.75
1637 1720 2.425975 GGGCATAGACCACCCTACTACT 60.426 54.545 0.00 0.00 40.75 2.57
1638 1721 1.969208 GGGCATAGACCACCCTACTAC 59.031 57.143 0.00 0.00 40.75 2.73
1639 1722 1.132945 GGGGCATAGACCACCCTACTA 60.133 57.143 0.00 0.00 43.68 1.82
1700 1813 7.969536 TGCATTAAATTAGCTACCATCTCTC 57.030 36.000 0.00 0.00 0.00 3.20
1712 1825 5.039333 GCCAGAGCACTTGCATTAAATTAG 58.961 41.667 3.62 0.00 45.16 1.73
1713 1826 4.706476 AGCCAGAGCACTTGCATTAAATTA 59.294 37.500 9.78 0.00 45.16 1.40
1714 1827 3.512724 AGCCAGAGCACTTGCATTAAATT 59.487 39.130 9.78 0.00 45.16 1.82
1715 1828 3.094572 AGCCAGAGCACTTGCATTAAAT 58.905 40.909 9.78 0.00 45.16 1.40
1717 1830 2.205022 AGCCAGAGCACTTGCATTAA 57.795 45.000 9.78 0.00 45.16 1.40
1718 1831 1.814394 CAAGCCAGAGCACTTGCATTA 59.186 47.619 9.78 0.00 45.16 1.90
1719 1832 0.601558 CAAGCCAGAGCACTTGCATT 59.398 50.000 9.78 0.00 45.16 3.56
1720 1833 1.248785 CCAAGCCAGAGCACTTGCAT 61.249 55.000 9.78 0.00 45.16 3.96
1723 1836 1.542492 ATTCCAAGCCAGAGCACTTG 58.458 50.000 0.00 0.00 43.56 3.16
1726 1839 1.067354 CCAAATTCCAAGCCAGAGCAC 60.067 52.381 0.00 0.00 43.56 4.40
1728 1841 0.533951 CCCAAATTCCAAGCCAGAGC 59.466 55.000 0.00 0.00 40.32 4.09
1729 1842 0.533951 GCCCAAATTCCAAGCCAGAG 59.466 55.000 0.00 0.00 0.00 3.35
1730 1843 1.250154 CGCCCAAATTCCAAGCCAGA 61.250 55.000 0.00 0.00 0.00 3.86
1775 1911 0.535335 TCGAGCAGTAACCATGGACC 59.465 55.000 21.47 5.30 0.00 4.46
1792 1928 1.040646 TAGCATAGTTGGAGGCCTCG 58.959 55.000 26.36 11.74 0.00 4.63
1795 1931 3.492102 TGAATAGCATAGTTGGAGGCC 57.508 47.619 0.00 0.00 0.00 5.19
1825 1961 1.134699 TCCAGACGAGCAAGCCTAATG 60.135 52.381 0.00 0.00 0.00 1.90
2113 2326 1.016415 TCCTACCCTCTAAGGCCAGT 58.984 55.000 5.01 0.00 32.73 4.00
2271 2486 8.256605 CAGATGAATCTTAGAGAAAACTGGAGA 58.743 37.037 0.00 0.00 34.22 3.71
2370 2585 3.432252 ACTTCACTATGCGCACTTAACAC 59.568 43.478 14.90 0.00 0.00 3.32
2380 2595 7.148641 AGAAATATAGGTGACTTCACTATGCG 58.851 38.462 9.20 0.00 45.73 4.73
2440 2655 2.903855 GCTCGTGGGGATGCCATG 60.904 66.667 5.30 0.00 0.00 3.66
2441 2656 3.092511 AGCTCGTGGGGATGCCAT 61.093 61.111 5.30 0.00 0.00 4.40
2444 2659 4.899239 CGGAGCTCGTGGGGATGC 62.899 72.222 7.83 0.00 0.00 3.91
2453 2668 2.233654 CCAAATCGCTCGGAGCTCG 61.234 63.158 25.96 12.85 39.60 5.03
2460 2675 4.274069 CATTTCATACACCAAATCGCTCG 58.726 43.478 0.00 0.00 0.00 5.03
2525 2740 4.215908 AGCCAATCGTCTAGACCTCAATA 58.784 43.478 17.23 0.00 0.00 1.90
2536 2751 1.251527 ACCGTCAGAGCCAATCGTCT 61.252 55.000 0.00 0.00 0.00 4.18
2570 2785 7.040617 CCGAGTGACTAGAACCATATAAGCTTA 60.041 40.741 8.99 8.99 0.00 3.09
2599 2815 6.599244 TGCATGACTTATCTAGGTTTCAAAGG 59.401 38.462 0.00 0.00 0.00 3.11
2618 2834 8.969260 ACTGATGACTAAAATAAGATGCATGA 57.031 30.769 2.46 0.00 0.00 3.07
2619 2835 9.447040 CAACTGATGACTAAAATAAGATGCATG 57.553 33.333 2.46 0.00 0.00 4.06
2642 2858 4.503714 TTAAGGAGGACCCATCATCAAC 57.496 45.455 0.00 0.00 37.38 3.18
2667 2883 4.704540 TGATAATGAAGAACGCCATTTGGT 59.295 37.500 0.00 0.00 37.57 3.67
2711 2927 3.438087 CACCATGTTTCTACAAGCCAGAG 59.562 47.826 0.00 0.00 37.91 3.35
2713 2929 3.058016 CACACCATGTTTCTACAAGCCAG 60.058 47.826 0.00 0.00 37.91 4.85
2714 2930 2.884012 CACACCATGTTTCTACAAGCCA 59.116 45.455 0.00 0.00 37.91 4.75
2715 2931 2.884639 ACACACCATGTTTCTACAAGCC 59.115 45.455 0.00 0.00 38.98 4.35
2716 2932 3.563808 TCACACACCATGTTTCTACAAGC 59.436 43.478 0.00 0.00 40.64 4.01
2952 3176 9.911788 AAAGAGAATCATAGGTTCATGTGTAAT 57.088 29.630 0.00 0.00 37.82 1.89
2956 3180 7.466996 GCTCAAAGAGAATCATAGGTTCATGTG 60.467 40.741 0.00 0.00 37.82 3.21
3032 3263 4.332543 TCAATCCAATAGCAAAGCTGTACG 59.667 41.667 1.04 0.00 40.10 3.67
3067 3298 7.043192 CCACTTTGCTCATTTTAAGAAACACTG 60.043 37.037 0.00 0.00 0.00 3.66
3088 3319 5.552870 TTCTCTTTCTCTAACAGCCACTT 57.447 39.130 0.00 0.00 0.00 3.16
3203 3434 7.707624 AAATTTCAGATATGCAAGAACTCCA 57.292 32.000 0.00 0.00 0.00 3.86
3212 3443 8.710835 TGAACGTACTAAATTTCAGATATGCA 57.289 30.769 0.00 0.00 0.00 3.96
3213 3444 9.982291 TTTGAACGTACTAAATTTCAGATATGC 57.018 29.630 0.00 0.00 29.96 3.14
3230 3461 0.584396 CTGCCGCAAGTTTGAACGTA 59.416 50.000 0.00 0.00 0.00 3.57
3233 3464 1.921243 AAACTGCCGCAAGTTTGAAC 58.079 45.000 15.64 0.00 46.16 3.18
3292 3523 6.183360 TGTCTTTCCCACACAAAAATTAGACC 60.183 38.462 0.00 0.00 0.00 3.85
3360 3591 8.746052 TTTTCTTCACAGAAGAACCATTTAGA 57.254 30.769 18.72 2.82 40.28 2.10
3365 3596 5.136105 AGCTTTTCTTCACAGAAGAACCAT 58.864 37.500 18.72 5.99 40.28 3.55
3406 3638 6.127054 ACAAGGCTAGCAATCTAGTATCACAA 60.127 38.462 18.24 0.00 43.30 3.33
3411 3643 6.931840 GCTAAACAAGGCTAGCAATCTAGTAT 59.068 38.462 18.24 0.00 43.30 2.12
3424 3656 2.309136 AATGGGTGCTAAACAAGGCT 57.691 45.000 0.00 0.00 0.00 4.58
3425 3657 3.244044 TGAAAATGGGTGCTAAACAAGGC 60.244 43.478 0.00 0.00 0.00 4.35
3426 3658 4.599047 TGAAAATGGGTGCTAAACAAGG 57.401 40.909 0.00 0.00 0.00 3.61
3427 3659 7.495135 AAAATGAAAATGGGTGCTAAACAAG 57.505 32.000 0.00 0.00 0.00 3.16
3428 3660 7.872113 AAAAATGAAAATGGGTGCTAAACAA 57.128 28.000 0.00 0.00 0.00 2.83
3449 3681 9.757227 CATTCCACTTCCAAAGTAACATAAAAA 57.243 29.630 0.00 0.00 40.46 1.94
3450 3682 8.919145 ACATTCCACTTCCAAAGTAACATAAAA 58.081 29.630 0.00 0.00 40.46 1.52
3451 3683 8.472007 ACATTCCACTTCCAAAGTAACATAAA 57.528 30.769 0.00 0.00 40.46 1.40
3452 3684 7.721842 TGACATTCCACTTCCAAAGTAACATAA 59.278 33.333 0.00 0.00 40.46 1.90
3453 3685 7.227873 TGACATTCCACTTCCAAAGTAACATA 58.772 34.615 0.00 0.00 40.46 2.29
3454 3686 6.068010 TGACATTCCACTTCCAAAGTAACAT 58.932 36.000 0.00 0.00 40.46 2.71
3455 3687 5.441500 TGACATTCCACTTCCAAAGTAACA 58.558 37.500 0.00 0.00 40.46 2.41
3456 3688 6.385649 TTGACATTCCACTTCCAAAGTAAC 57.614 37.500 0.00 0.00 40.46 2.50
3457 3689 7.123547 AGTTTTGACATTCCACTTCCAAAGTAA 59.876 33.333 0.00 0.00 40.46 2.24
3458 3690 6.605594 AGTTTTGACATTCCACTTCCAAAGTA 59.394 34.615 0.00 0.00 40.46 2.24
3459 3691 5.422012 AGTTTTGACATTCCACTTCCAAAGT 59.578 36.000 0.00 0.00 44.06 2.66
3460 3692 5.906073 AGTTTTGACATTCCACTTCCAAAG 58.094 37.500 0.00 0.00 0.00 2.77
3461 3693 5.930837 AGTTTTGACATTCCACTTCCAAA 57.069 34.783 0.00 0.00 0.00 3.28
3462 3694 5.420421 TGAAGTTTTGACATTCCACTTCCAA 59.580 36.000 7.67 0.00 41.76 3.53
3463 3695 4.952957 TGAAGTTTTGACATTCCACTTCCA 59.047 37.500 7.67 0.00 41.76 3.53
3464 3696 5.514274 TGAAGTTTTGACATTCCACTTCC 57.486 39.130 7.67 0.00 41.76 3.46
3465 3697 8.424274 AAAATGAAGTTTTGACATTCCACTTC 57.576 30.769 3.84 3.84 42.45 3.01
3466 3698 8.791327 AAAAATGAAGTTTTGACATTCCACTT 57.209 26.923 0.00 0.00 39.86 3.16
3467 3699 9.883142 TTAAAAATGAAGTTTTGACATTCCACT 57.117 25.926 0.00 0.00 39.86 4.00
3470 3702 9.597999 GCATTAAAAATGAAGTTTTGACATTCC 57.402 29.630 3.86 0.00 39.86 3.01
3471 3703 9.597999 GGCATTAAAAATGAAGTTTTGACATTC 57.402 29.630 3.86 0.00 39.86 2.67
3472 3704 9.118300 TGGCATTAAAAATGAAGTTTTGACATT 57.882 25.926 3.86 0.00 39.86 2.71
3473 3705 8.674263 TGGCATTAAAAATGAAGTTTTGACAT 57.326 26.923 3.86 0.00 39.86 3.06
3474 3706 8.498054 TTGGCATTAAAAATGAAGTTTTGACA 57.502 26.923 3.86 0.00 39.86 3.58
3475 3707 7.587392 GCTTGGCATTAAAAATGAAGTTTTGAC 59.413 33.333 3.86 0.00 39.86 3.18
3476 3708 7.498570 AGCTTGGCATTAAAAATGAAGTTTTGA 59.501 29.630 3.86 0.00 39.86 2.69
3477 3709 7.641760 AGCTTGGCATTAAAAATGAAGTTTTG 58.358 30.769 3.86 0.00 39.86 2.44
3478 3710 7.806409 AGCTTGGCATTAAAAATGAAGTTTT 57.194 28.000 3.86 0.00 41.69 2.43
3479 3711 7.716560 AGAAGCTTGGCATTAAAAATGAAGTTT 59.283 29.630 2.10 4.03 0.00 2.66
3480 3712 7.172019 CAGAAGCTTGGCATTAAAAATGAAGTT 59.828 33.333 2.10 0.00 0.00 2.66
3481 3713 6.647895 CAGAAGCTTGGCATTAAAAATGAAGT 59.352 34.615 2.10 0.00 0.00 3.01
3482 3714 6.647895 ACAGAAGCTTGGCATTAAAAATGAAG 59.352 34.615 2.10 1.33 0.00 3.02
3483 3715 6.424509 CACAGAAGCTTGGCATTAAAAATGAA 59.575 34.615 2.10 0.00 0.00 2.57
3484 3716 5.927689 CACAGAAGCTTGGCATTAAAAATGA 59.072 36.000 2.10 0.00 0.00 2.57
3485 3717 5.697633 ACACAGAAGCTTGGCATTAAAAATG 59.302 36.000 2.10 0.00 0.00 2.32
3486 3718 5.857268 ACACAGAAGCTTGGCATTAAAAAT 58.143 33.333 2.10 0.00 0.00 1.82
3487 3719 5.163468 TGACACAGAAGCTTGGCATTAAAAA 60.163 36.000 2.10 0.00 0.00 1.94
3488 3720 4.340666 TGACACAGAAGCTTGGCATTAAAA 59.659 37.500 2.10 0.00 0.00 1.52
3489 3721 3.888323 TGACACAGAAGCTTGGCATTAAA 59.112 39.130 2.10 0.00 0.00 1.52
3490 3722 3.485394 TGACACAGAAGCTTGGCATTAA 58.515 40.909 2.10 0.00 0.00 1.40
3491 3723 3.076621 CTGACACAGAAGCTTGGCATTA 58.923 45.455 2.10 0.00 32.44 1.90
3492 3724 1.884579 CTGACACAGAAGCTTGGCATT 59.115 47.619 2.10 0.00 32.44 3.56
3493 3725 1.202855 ACTGACACAGAAGCTTGGCAT 60.203 47.619 2.10 0.00 35.18 4.40
3494 3726 0.181114 ACTGACACAGAAGCTTGGCA 59.819 50.000 2.10 0.00 35.18 4.92
3495 3727 1.312815 AACTGACACAGAAGCTTGGC 58.687 50.000 2.10 0.00 35.18 4.52
3496 3728 2.945008 TCAAACTGACACAGAAGCTTGG 59.055 45.455 2.10 0.00 35.18 3.61
3497 3729 4.514441 AGATCAAACTGACACAGAAGCTTG 59.486 41.667 2.10 0.00 35.18 4.01
3498 3730 4.514441 CAGATCAAACTGACACAGAAGCTT 59.486 41.667 0.00 0.00 39.94 3.74
3499 3731 4.063689 CAGATCAAACTGACACAGAAGCT 58.936 43.478 5.76 0.00 39.94 3.74
3500 3732 4.401525 CAGATCAAACTGACACAGAAGC 57.598 45.455 5.76 0.00 39.94 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.