Multiple sequence alignment - TraesCS7B01G155800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7B01G155800
chr7B
100.000
4288
0
0
1402
5689
210810833
210806546
0.000000e+00
7919.0
1
TraesCS7B01G155800
chr7B
100.000
1088
0
0
1
1088
210812234
210811147
0.000000e+00
2010.0
2
TraesCS7B01G155800
chr7B
85.417
96
12
1
122
215
643698762
643698857
1.300000e-16
99.0
3
TraesCS7B01G155800
chr7B
97.436
39
1
0
1
39
693867611
693867573
3.680000e-07
67.6
4
TraesCS7B01G155800
chr7B
95.122
41
1
1
1
40
38433499
38433539
4.760000e-06
63.9
5
TraesCS7B01G155800
chr7D
93.750
2208
111
13
3495
5682
234796545
234794345
0.000000e+00
3288.0
6
TraesCS7B01G155800
chr7D
88.185
931
42
24
1405
2318
234798606
234797727
0.000000e+00
1048.0
7
TraesCS7B01G155800
chr7D
88.483
547
50
7
2948
3491
234797168
234796632
0.000000e+00
649.0
8
TraesCS7B01G155800
chr7D
86.982
507
48
7
2357
2845
234797727
234797221
6.440000e-154
555.0
9
TraesCS7B01G155800
chr7D
89.630
405
20
13
530
925
234799363
234798972
3.960000e-136
496.0
10
TraesCS7B01G155800
chr7D
88.435
294
14
6
258
533
234799774
234799483
2.540000e-88
337.0
11
TraesCS7B01G155800
chr7A
96.760
1821
51
6
3867
5682
249582997
249581180
0.000000e+00
3029.0
12
TraesCS7B01G155800
chr7A
95.031
1469
57
8
2336
3792
249584457
249582993
0.000000e+00
2294.0
13
TraesCS7B01G155800
chr7A
91.193
897
41
14
1461
2351
249587401
249586537
0.000000e+00
1184.0
14
TraesCS7B01G155800
chr7A
85.030
334
21
13
616
925
249588092
249587764
4.280000e-81
313.0
15
TraesCS7B01G155800
chr7A
79.381
485
51
18
51
493
249588815
249588338
4.310000e-76
296.0
16
TraesCS7B01G155800
chr7A
86.667
90
12
0
122
211
561590739
561590828
3.630000e-17
100.0
17
TraesCS7B01G155800
chr7A
93.333
45
2
1
1
44
591648226
591648270
1.320000e-06
65.8
18
TraesCS7B01G155800
chr3B
86.957
92
12
0
121
212
390224724
390224633
2.800000e-18
104.0
19
TraesCS7B01G155800
chr2B
86.316
95
13
0
120
214
28506455
28506361
2.800000e-18
104.0
20
TraesCS7B01G155800
chr2B
100.000
36
0
0
1
36
748164288
748164253
3.680000e-07
67.6
21
TraesCS7B01G155800
chr6D
86.170
94
11
2
122
214
100571331
100571423
3.630000e-17
100.0
22
TraesCS7B01G155800
chr4D
86.022
93
11
2
123
214
358710759
358710668
1.300000e-16
99.0
23
TraesCS7B01G155800
chr4B
86.022
93
11
2
123
214
193969478
193969569
1.300000e-16
99.0
24
TraesCS7B01G155800
chr4B
100.000
36
0
0
1
36
215063302
215063267
3.680000e-07
67.6
25
TraesCS7B01G155800
chr4B
100.000
35
0
0
1
35
228435710
228435676
1.320000e-06
65.8
26
TraesCS7B01G155800
chr2D
86.022
93
11
2
123
214
624271393
624271302
1.300000e-16
99.0
27
TraesCS7B01G155800
chr2D
92.857
42
2
1
1
42
649562207
649562247
6.160000e-05
60.2
28
TraesCS7B01G155800
chr5D
84.694
98
14
1
117
214
300763132
300763036
4.690000e-16
97.1
29
TraesCS7B01G155800
chr5B
97.436
39
1
0
1
39
94664491
94664453
3.680000e-07
67.6
30
TraesCS7B01G155800
chrUn
91.304
46
2
2
1
44
30202153
30202198
1.710000e-05
62.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7B01G155800
chr7B
210806546
210812234
5688
True
4964.500000
7919
100.000000
1
5689
2
chr7B.!!$R2
5688
1
TraesCS7B01G155800
chr7D
234794345
234799774
5429
True
1062.166667
3288
89.244167
258
5682
6
chr7D.!!$R1
5424
2
TraesCS7B01G155800
chr7A
249581180
249588815
7635
True
1423.200000
3029
89.479000
51
5682
5
chr7A.!!$R1
5631
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
131
132
0.597072
GCCGATTACTACTCCCTCCG
59.403
60.000
0.00
0.00
0.00
4.63
F
1647
2178
0.304705
CAGTTGACAGTTGACACCGC
59.695
55.000
0.00
0.00
0.00
5.68
F
1896
2436
0.036010
AGGTGACCTGCCATTTCTCG
60.036
55.000
1.77
0.00
29.57
4.04
F
2029
2582
0.840729
GCGACGAGACGTTCATCATC
59.159
55.000
0.00
0.00
41.37
2.92
F
3271
5938
1.342174
CCATGGAAATATGCCAGTGCC
59.658
52.381
5.56
0.00
39.11
5.01
F
3423
6093
1.343142
GAGTTTGGCAAACCGGGATTT
59.657
47.619
33.07
17.18
42.34
2.17
F
4298
7073
0.867746
TTCAGTGACGCTGCAATGAC
59.132
50.000
11.29
0.00
41.84
3.06
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1697
2228
0.106149
AGTGAGACCGACAACAACCC
59.894
55.000
0.00
0.00
0.00
4.11
R
2703
5367
1.198759
TTAAGGCTCGCTTGGGTCCT
61.199
55.000
0.00
0.00
0.00
3.85
R
3013
5679
1.490574
ATCAGTCTCACCCTACTGGC
58.509
55.000
0.00
0.00
42.72
4.85
R
3295
5965
1.531677
CCACAGTTGTGCACAAGTTCG
60.532
52.381
32.36
24.79
44.34
3.95
R
4271
7046
0.034059
AGCGTCACTGAAGGGAGTTG
59.966
55.000
0.00
0.00
0.00
3.16
R
4589
7364
0.037882
ATATCCTCGACGCCAGCATG
60.038
55.000
0.00
0.00
0.00
4.06
R
5113
7891
0.107268
TGCTCAGAGACTGCAAGCAA
59.893
50.000
0.00
0.00
38.03
3.91
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
31
32
9.594478
TCTCGTAGTAATTTGCTCATATTTTCA
57.406
29.630
0.00
0.00
0.00
2.69
33
34
9.982291
TCGTAGTAATTTGCTCATATTTTCAAC
57.018
29.630
0.00
0.00
0.00
3.18
34
35
9.767684
CGTAGTAATTTGCTCATATTTTCAACA
57.232
29.630
0.00
0.00
0.00
3.33
66
67
1.203994
GTAGACGTAGCCTTGGCTCAA
59.796
52.381
18.28
0.00
0.00
3.02
68
69
1.079503
GACGTAGCCTTGGCTCAAAG
58.920
55.000
18.28
6.62
0.00
2.77
101
102
3.380004
GCCATCGGAAATGTTATTGTCCA
59.620
43.478
0.00
0.00
0.00
4.02
129
130
2.028930
CCATGCCGATTACTACTCCCTC
60.029
54.545
0.00
0.00
0.00
4.30
131
132
0.597072
GCCGATTACTACTCCCTCCG
59.403
60.000
0.00
0.00
0.00
4.63
134
135
2.692041
CCGATTACTACTCCCTCCGTTT
59.308
50.000
0.00
0.00
0.00
3.60
135
136
3.490419
CCGATTACTACTCCCTCCGTTTG
60.490
52.174
0.00
0.00
0.00
2.93
146
147
5.014808
TCCCTCCGTTTGTAAGTATAAGC
57.985
43.478
0.00
0.00
0.00
3.09
147
148
4.467082
TCCCTCCGTTTGTAAGTATAAGCA
59.533
41.667
0.00
0.00
0.00
3.91
149
150
5.416947
CCTCCGTTTGTAAGTATAAGCACT
58.583
41.667
0.00
0.00
0.00
4.40
168
169
7.524294
AGCACTTTTAAATATTTCAATGCGG
57.476
32.000
3.39
1.13
34.59
5.69
169
170
7.096551
AGCACTTTTAAATATTTCAATGCGGT
58.903
30.769
3.39
0.21
34.59
5.68
188
189
9.448438
AATGCGGTCTATATATGAAGCAAAATA
57.552
29.630
14.30
0.00
34.70
1.40
190
191
8.935844
TGCGGTCTATATATGAAGCAAAATAAG
58.064
33.333
0.00
0.00
0.00
1.73
191
192
8.936864
GCGGTCTATATATGAAGCAAAATAAGT
58.063
33.333
0.00
0.00
0.00
2.24
244
261
7.907214
TTGAAATCTCTAGAAAGCTTGTACC
57.093
36.000
0.00
0.00
0.00
3.34
245
262
6.407202
TGAAATCTCTAGAAAGCTTGTACCC
58.593
40.000
0.00
0.00
0.00
3.69
248
265
5.818678
TCTCTAGAAAGCTTGTACCCAAA
57.181
39.130
0.00
0.00
0.00
3.28
251
268
6.485648
TCTCTAGAAAGCTTGTACCCAAAAAC
59.514
38.462
0.00
0.00
0.00
2.43
252
269
6.123651
TCTAGAAAGCTTGTACCCAAAAACA
58.876
36.000
0.00
0.00
0.00
2.83
256
273
4.164843
AGCTTGTACCCAAAAACAGAGA
57.835
40.909
0.00
0.00
0.00
3.10
267
285
5.875359
CCCAAAAACAGAGACAGTAGTATCC
59.125
44.000
0.00
0.00
36.65
2.59
268
286
5.875359
CCAAAAACAGAGACAGTAGTATCCC
59.125
44.000
0.00
0.00
36.65
3.85
270
288
6.681729
AAAACAGAGACAGTAGTATCCCAA
57.318
37.500
0.00
0.00
36.65
4.12
271
289
5.923733
AACAGAGACAGTAGTATCCCAAG
57.076
43.478
0.00
0.00
36.65
3.61
279
297
3.449737
CAGTAGTATCCCAAGGAAACGGA
59.550
47.826
0.00
0.00
34.34
4.69
454
494
2.584835
TTCTTGGTCACAATGGGGAG
57.415
50.000
0.00
0.00
35.73
4.30
516
556
1.002857
AGGTCTCCCCTTTCCAATGG
58.997
55.000
0.00
0.00
42.73
3.16
548
786
1.005394
CTGGTAAACCCACGTCGCT
60.005
57.895
0.00
0.00
38.72
4.93
563
801
3.041940
GCTGCACTTGCGTACGGT
61.042
61.111
18.39
3.36
45.83
4.83
570
808
3.909258
CTTGCGTACGGTGCGTCCT
62.909
63.158
18.39
0.00
41.54
3.85
585
823
2.621338
CGTCCTGTTCTATGCACATGT
58.379
47.619
0.00
0.00
0.00
3.21
634
900
4.667420
ACGAAGTTGGACGCGATT
57.333
50.000
15.93
0.00
37.78
3.34
635
901
2.908817
ACGAAGTTGGACGCGATTT
58.091
47.368
15.93
0.00
37.78
2.17
636
902
1.223187
ACGAAGTTGGACGCGATTTT
58.777
45.000
15.93
0.00
37.78
1.82
925
1236
4.075793
CCGTCTCCTCCCCTCCCA
62.076
72.222
0.00
0.00
0.00
4.37
926
1237
2.443016
CGTCTCCTCCCCTCCCAG
60.443
72.222
0.00
0.00
0.00
4.45
927
1238
2.781406
GTCTCCTCCCCTCCCAGT
59.219
66.667
0.00
0.00
0.00
4.00
930
1241
2.944954
TCCTCCCCTCCCAGTCGA
60.945
66.667
0.00
0.00
0.00
4.20
932
1243
1.383248
CCTCCCCTCCCAGTCGAAT
60.383
63.158
0.00
0.00
0.00
3.34
955
1266
2.941025
CACCTCACCCCACCCCAT
60.941
66.667
0.00
0.00
0.00
4.00
956
1267
2.614013
ACCTCACCCCACCCCATC
60.614
66.667
0.00
0.00
0.00
3.51
957
1268
3.420482
CCTCACCCCACCCCATCC
61.420
72.222
0.00
0.00
0.00
3.51
958
1269
3.420482
CTCACCCCACCCCATCCC
61.420
72.222
0.00
0.00
0.00
3.85
959
1270
4.293696
TCACCCCACCCCATCCCA
62.294
66.667
0.00
0.00
0.00
4.37
960
1271
4.060667
CACCCCACCCCATCCCAC
62.061
72.222
0.00
0.00
0.00
4.61
965
1276
4.109675
CACCCCATCCCACCCGTC
62.110
72.222
0.00
0.00
0.00
4.79
970
1281
4.530857
CATCCCACCCGTCGCCTC
62.531
72.222
0.00
0.00
0.00
4.70
988
1299
3.917760
CACCCCTCCCGCTCGATC
61.918
72.222
0.00
0.00
0.00
3.69
991
1302
3.917760
CCCTCCCGCTCGATCCAC
61.918
72.222
0.00
0.00
0.00
4.02
992
1303
3.917760
CCTCCCGCTCGATCCACC
61.918
72.222
0.00
0.00
0.00
4.61
993
1304
3.917760
CTCCCGCTCGATCCACCC
61.918
72.222
0.00
0.00
0.00
4.61
996
1307
4.570663
CCGCTCGATCCACCCGTC
62.571
72.222
0.00
0.00
0.00
4.79
997
1308
4.570663
CGCTCGATCCACCCGTCC
62.571
72.222
0.00
0.00
0.00
4.79
998
1309
4.222847
GCTCGATCCACCCGTCCC
62.223
72.222
0.00
0.00
0.00
4.46
999
1310
3.900892
CTCGATCCACCCGTCCCG
61.901
72.222
0.00
0.00
0.00
5.14
1000
1311
4.429522
TCGATCCACCCGTCCCGA
62.430
66.667
0.00
0.00
0.00
5.14
1001
1312
3.224324
CGATCCACCCGTCCCGAT
61.224
66.667
0.00
0.00
0.00
4.18
1002
1313
2.421739
GATCCACCCGTCCCGATG
59.578
66.667
0.00
0.00
0.00
3.84
1032
1561
1.075600
CCTCACCCTCCTCCTCCTC
60.076
68.421
0.00
0.00
0.00
3.71
1033
1562
1.075600
CTCACCCTCCTCCTCCTCC
60.076
68.421
0.00
0.00
0.00
4.30
1034
1563
1.547755
TCACCCTCCTCCTCCTCCT
60.548
63.158
0.00
0.00
0.00
3.69
1035
1564
1.075600
CACCCTCCTCCTCCTCCTC
60.076
68.421
0.00
0.00
0.00
3.71
1036
1565
2.329399
ACCCTCCTCCTCCTCCTCC
61.329
68.421
0.00
0.00
0.00
4.30
1037
1566
2.018086
CCCTCCTCCTCCTCCTCCT
61.018
68.421
0.00
0.00
0.00
3.69
1038
1567
1.541672
CCTCCTCCTCCTCCTCCTC
59.458
68.421
0.00
0.00
0.00
3.71
1039
1568
1.541672
CTCCTCCTCCTCCTCCTCC
59.458
68.421
0.00
0.00
0.00
4.30
1040
1569
0.998945
CTCCTCCTCCTCCTCCTCCT
60.999
65.000
0.00
0.00
0.00
3.69
1041
1570
0.996762
TCCTCCTCCTCCTCCTCCTC
60.997
65.000
0.00
0.00
0.00
3.71
1042
1571
1.541672
CTCCTCCTCCTCCTCCTCC
59.458
68.421
0.00
0.00
0.00
4.30
1043
1572
0.998945
CTCCTCCTCCTCCTCCTCCT
60.999
65.000
0.00
0.00
0.00
3.69
1463
1993
4.995058
GGTCCTCACCCACCCCCA
62.995
72.222
0.00
0.00
36.54
4.96
1464
1994
3.647771
GTCCTCACCCACCCCCAC
61.648
72.222
0.00
0.00
0.00
4.61
1465
1995
4.995058
TCCTCACCCACCCCCACC
62.995
72.222
0.00
0.00
0.00
4.61
1550
2081
3.653344
GTGGCTGATTTTGTTTTCCTCC
58.347
45.455
0.00
0.00
0.00
4.30
1633
2164
2.908073
GCCGCACCAAGGTCAGTTG
61.908
63.158
0.00
0.00
0.00
3.16
1634
2165
1.227823
CCGCACCAAGGTCAGTTGA
60.228
57.895
0.00
0.00
0.00
3.18
1635
2166
1.507141
CCGCACCAAGGTCAGTTGAC
61.507
60.000
3.67
3.67
44.04
3.18
1636
2167
0.813610
CGCACCAAGGTCAGTTGACA
60.814
55.000
13.73
0.00
46.47
3.58
1637
2168
0.947244
GCACCAAGGTCAGTTGACAG
59.053
55.000
13.73
3.71
46.47
3.51
1638
2169
1.747206
GCACCAAGGTCAGTTGACAGT
60.747
52.381
13.73
3.32
46.47
3.55
1639
2170
2.643551
CACCAAGGTCAGTTGACAGTT
58.356
47.619
13.73
4.34
46.47
3.16
1640
2171
2.355756
CACCAAGGTCAGTTGACAGTTG
59.644
50.000
13.73
14.35
46.47
3.16
1647
2178
0.304705
CAGTTGACAGTTGACACCGC
59.695
55.000
0.00
0.00
0.00
5.68
1675
2206
4.477975
CCCGTCGCCTGTCTCGTC
62.478
72.222
0.00
0.00
0.00
4.20
1676
2207
3.432588
CCGTCGCCTGTCTCGTCT
61.433
66.667
0.00
0.00
0.00
4.18
1677
2208
2.561885
CGTCGCCTGTCTCGTCTT
59.438
61.111
0.00
0.00
0.00
3.01
1678
2209
1.642037
CCGTCGCCTGTCTCGTCTTA
61.642
60.000
0.00
0.00
0.00
2.10
1698
2229
4.102113
CCTGGTTTTGGGAGCTGG
57.898
61.111
0.00
0.00
0.00
4.85
1699
2230
1.607467
CCTGGTTTTGGGAGCTGGG
60.607
63.158
0.00
0.00
33.90
4.45
1707
2238
0.467290
TTGGGAGCTGGGTTGTTGTC
60.467
55.000
0.00
0.00
0.00
3.18
1716
2255
0.106149
GGGTTGTTGTCGGTCTCACT
59.894
55.000
0.00
0.00
0.00
3.41
1719
2258
1.859080
GTTGTTGTCGGTCTCACTCAC
59.141
52.381
0.00
0.00
0.00
3.51
1720
2259
1.107945
TGTTGTCGGTCTCACTCACA
58.892
50.000
0.00
0.00
0.00
3.58
1721
2260
1.686587
TGTTGTCGGTCTCACTCACAT
59.313
47.619
0.00
0.00
0.00
3.21
1722
2261
2.288213
TGTTGTCGGTCTCACTCACATC
60.288
50.000
0.00
0.00
0.00
3.06
1896
2436
0.036010
AGGTGACCTGCCATTTCTCG
60.036
55.000
1.77
0.00
29.57
4.04
1925
2465
1.009829
GCAGAAATGCTACCACTCCG
58.990
55.000
0.00
0.00
0.00
4.63
1999
2552
0.953727
GTGTGTTCATGCCTTGCTGA
59.046
50.000
0.00
0.00
0.00
4.26
2000
2553
0.953727
TGTGTTCATGCCTTGCTGAC
59.046
50.000
0.00
0.00
0.00
3.51
2029
2582
0.840729
GCGACGAGACGTTCATCATC
59.159
55.000
0.00
0.00
41.37
2.92
2081
2634
4.363990
CGGTGCTCTCTGGTGCGT
62.364
66.667
0.00
0.00
35.02
5.24
2108
2661
1.359848
GCTGGTTGTCATGACGGTAG
58.640
55.000
20.54
15.73
0.00
3.18
2177
2730
2.006888
TGTTAATTACTCCTGCTGCGC
58.993
47.619
0.00
0.00
0.00
6.09
2222
2775
2.514824
GGGCTTGGCAGGATCGTC
60.515
66.667
0.00
0.00
0.00
4.20
2306
2859
6.198650
TGTTAGCTTGATGTCCATTGATTG
57.801
37.500
0.00
0.00
0.00
2.67
2330
2883
3.391296
TCAAGCTGGTCTGAGGTTTTAGT
59.609
43.478
0.00
0.00
31.25
2.24
2438
5101
5.783111
ACCATAACTGTTCCAAAAGCATTC
58.217
37.500
0.00
0.00
0.00
2.67
2454
5117
9.352163
CAAAAGCATTCATAAACGTTTTAACAC
57.648
29.630
20.19
7.44
0.00
3.32
2459
5122
7.567952
GCATTCATAAACGTTTTAACACCAACC
60.568
37.037
20.19
0.00
0.00
3.77
2482
5145
6.485984
ACCTGCTAAATATTGATCTCTGCAAG
59.514
38.462
0.00
0.00
0.00
4.01
2509
5172
5.105877
CCTGAAATATGCATTAGATGGCCAG
60.106
44.000
13.05
0.00
0.00
4.85
2699
5363
7.166851
TCCCCAGTTACGTGTTGATTTATTTA
58.833
34.615
0.00
0.00
0.00
1.40
2703
5367
8.670135
CCAGTTACGTGTTGATTTATTTATCCA
58.330
33.333
0.00
0.00
0.00
3.41
2809
5475
5.368145
TGTGTAAGAATTCAGACAGCAAGT
58.632
37.500
8.44
0.00
0.00
3.16
2900
5566
2.124403
CTCCATGGCCCACTCAGC
60.124
66.667
6.96
0.00
0.00
4.26
2927
5593
4.398044
TCACTCAAAACCACAGAAAAGGAC
59.602
41.667
0.00
0.00
0.00
3.85
2978
5644
1.681327
GTCCGCTGACTCACCCCTA
60.681
63.158
0.37
0.00
38.53
3.53
3013
5679
3.425359
CCTTTGCTGTAAGAAGATGCACG
60.425
47.826
0.00
0.00
34.07
5.34
3054
5720
9.941325
CTGATAGATCAGCTTATCTTTAACCAT
57.059
33.333
15.38
2.38
46.63
3.55
3086
5753
5.361857
TGTCTAGTAAACCATAGTACCCAGC
59.638
44.000
0.00
0.00
0.00
4.85
3196
5863
5.459762
CCTAACAGTGTGCAAACAAATTCAG
59.540
40.000
10.29
0.00
0.00
3.02
3261
5928
8.588290
AAGCACATTTAGTTACCATGGAAATA
57.412
30.769
21.47
9.21
0.00
1.40
3271
5938
1.342174
CCATGGAAATATGCCAGTGCC
59.658
52.381
5.56
0.00
39.11
5.01
3295
5965
2.168496
GAGGCTTAAAACTGGGTTCCC
58.832
52.381
0.12
0.12
0.00
3.97
3360
6030
1.616159
TGGAAGGCCTAGTGCAAAAC
58.384
50.000
5.16
0.00
43.89
2.43
3386
6056
9.173021
CTAGTGATACATCTAAGGAGATTCGAT
57.827
37.037
0.00
0.00
40.68
3.59
3423
6093
1.343142
GAGTTTGGCAAACCGGGATTT
59.657
47.619
33.07
17.18
42.34
2.17
3468
6138
6.867550
TCCATCGGTCTTATCATGCTTATAG
58.132
40.000
0.00
0.00
0.00
1.31
3471
6141
7.702772
CCATCGGTCTTATCATGCTTATAGTAC
59.297
40.741
0.00
0.00
0.00
2.73
3535
6289
6.959361
AGGTATTTCGTGAAATATGCATGTC
58.041
36.000
10.16
4.70
42.93
3.06
3625
6379
6.463995
TGTTTTTGTGCTTCAGTCCTTTAT
57.536
33.333
0.00
0.00
0.00
1.40
3746
6508
3.181471
GGCTCTACAGCTGAGAATTAGCA
60.181
47.826
23.35
1.22
46.03
3.49
3765
6528
5.607119
AGCATAGTCTTGTTTGTTTACCG
57.393
39.130
0.00
0.00
0.00
4.02
3809
6572
2.302260
TCTGTTTGGGTTGCGATTCAA
58.698
42.857
0.00
0.00
0.00
2.69
3823
6586
7.542130
GGTTGCGATTCAATTTCTCAAAATACT
59.458
33.333
0.00
0.00
36.99
2.12
3896
6659
5.627780
CCTTTTGTGTCAATAGCGGTTTTAC
59.372
40.000
0.00
0.00
0.00
2.01
4055
6819
4.965119
AGGGAAATCAACATTTAGACGC
57.035
40.909
0.00
0.00
31.94
5.19
4111
6875
3.418047
AGGTACATTTCCCGTCCTTTTG
58.582
45.455
0.00
0.00
0.00
2.44
4260
7035
3.548616
CGCCAACTGTGCATATACAATGG
60.549
47.826
0.00
0.00
39.12
3.16
4269
7044
9.135189
ACTGTGCATATACAATGGTTGATAAAT
57.865
29.630
0.00
0.00
0.00
1.40
4298
7073
0.867746
TTCAGTGACGCTGCAATGAC
59.132
50.000
11.29
0.00
41.84
3.06
4332
7107
3.684305
TCAACGGCTTGATGTATGACTTG
59.316
43.478
0.00
0.00
31.00
3.16
4426
7201
4.196193
TGCGGTATGACTTATTTCCCTTG
58.804
43.478
0.00
0.00
0.00
3.61
4610
7385
1.106944
TGCTGGCGTCGAGGATATCA
61.107
55.000
9.75
0.55
0.00
2.15
4747
7522
3.695830
TGTTGGTAAGATCACACTCCC
57.304
47.619
0.00
0.00
0.00
4.30
4781
7556
5.598417
TCACCTCATCTTACTTAGCAGCATA
59.402
40.000
0.00
0.00
0.00
3.14
5063
7841
1.121240
GATGATCTTGCCGACGTACG
58.879
55.000
15.01
15.01
42.18
3.67
5103
7881
1.678970
GGCACATGGTGGGGAAGAC
60.679
63.158
0.00
0.00
33.64
3.01
5113
7891
2.732619
GGGGAAGACGCCGAGGATT
61.733
63.158
0.00
0.00
39.24
3.01
5220
7998
0.107508
ACGAGGAACATCTGGCCATG
60.108
55.000
5.51
5.05
0.00
3.66
5292
8070
1.023513
GGCTCGCTGCTGTTGAAGAT
61.024
55.000
0.00
0.00
42.39
2.40
5602
8380
1.349259
CCACGAACACGAACGGGATC
61.349
60.000
2.83
0.00
34.69
3.36
5670
8448
6.385176
TCCATCAATCAAATCAGTCTCCTAGT
59.615
38.462
0.00
0.00
0.00
2.57
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
5
6
9.594478
TGAAAATATGAGCAAATTACTACGAGA
57.406
29.630
0.00
0.00
0.00
4.04
7
8
9.982291
GTTGAAAATATGAGCAAATTACTACGA
57.018
29.630
0.00
0.00
0.00
3.43
8
9
9.767684
TGTTGAAAATATGAGCAAATTACTACG
57.232
29.630
0.00
0.00
0.00
3.51
26
27
9.920826
CGTCTACGTATATACTAGTGTTGAAAA
57.079
33.333
5.39
0.00
34.11
2.29
45
46
4.396854
GCCAAGGCTACGTCTACG
57.603
61.111
3.29
0.04
40.86
3.51
58
59
3.329386
CTCGAATCTGACTTTGAGCCAA
58.671
45.455
0.00
0.00
31.59
4.52
92
93
3.006940
GCATGGACGAACTGGACAATAA
58.993
45.455
0.00
0.00
0.00
1.40
93
94
2.627945
GCATGGACGAACTGGACAATA
58.372
47.619
0.00
0.00
0.00
1.90
129
130
9.881529
TTTAAAAGTGCTTATACTTACAAACGG
57.118
29.630
0.00
0.00
39.86
4.44
146
147
8.687824
AGACCGCATTGAAATATTTAAAAGTG
57.312
30.769
0.00
4.05
0.00
3.16
156
157
9.098355
GCTTCATATATAGACCGCATTGAAATA
57.902
33.333
0.00
0.00
0.00
1.40
161
162
6.726258
TTGCTTCATATATAGACCGCATTG
57.274
37.500
0.00
0.00
0.00
2.82
219
235
7.554476
GGGTACAAGCTTTCTAGAGATTTCAAT
59.446
37.037
0.00
0.00
0.00
2.57
226
242
5.818678
TTTGGGTACAAGCTTTCTAGAGA
57.181
39.130
0.00
0.00
37.97
3.10
232
248
5.067283
TCTCTGTTTTTGGGTACAAGCTTTC
59.933
40.000
0.00
0.00
37.97
2.62
236
252
3.630312
TGTCTCTGTTTTTGGGTACAAGC
59.370
43.478
0.00
0.00
37.97
4.01
244
261
5.875359
GGGATACTACTGTCTCTGTTTTTGG
59.125
44.000
0.00
0.00
0.00
3.28
245
262
6.464222
TGGGATACTACTGTCTCTGTTTTTG
58.536
40.000
0.00
0.00
0.00
2.44
248
265
5.187967
CCTTGGGATACTACTGTCTCTGTTT
59.812
44.000
0.00
0.00
0.00
2.83
251
268
4.537751
TCCTTGGGATACTACTGTCTCTG
58.462
47.826
0.00
0.00
0.00
3.35
252
269
4.883021
TCCTTGGGATACTACTGTCTCT
57.117
45.455
0.00
0.00
0.00
3.10
256
273
3.197116
CCGTTTCCTTGGGATACTACTGT
59.803
47.826
5.83
0.00
32.74
3.55
267
285
0.690762
TTCCTCCTCCGTTTCCTTGG
59.309
55.000
0.00
0.00
0.00
3.61
268
286
2.027192
TGATTCCTCCTCCGTTTCCTTG
60.027
50.000
0.00
0.00
0.00
3.61
270
288
1.834263
CTGATTCCTCCTCCGTTTCCT
59.166
52.381
0.00
0.00
0.00
3.36
271
289
1.555533
ACTGATTCCTCCTCCGTTTCC
59.444
52.381
0.00
0.00
0.00
3.13
279
297
3.009916
AGTGCATGAAACTGATTCCTCCT
59.990
43.478
0.00
0.00
37.22
3.69
353
393
2.031069
TCGCGATGAAGATGCTAGTACC
60.031
50.000
3.71
0.00
0.00
3.34
454
494
2.593956
AAACTCTGCCCGACTCCCC
61.594
63.158
0.00
0.00
0.00
4.81
516
556
1.248785
TACCAGAGGTCAGTCCGCAC
61.249
60.000
0.00
0.00
41.99
5.34
563
801
0.320050
TGTGCATAGAACAGGACGCA
59.680
50.000
0.00
0.00
0.00
5.24
570
808
3.311486
TCGTGACATGTGCATAGAACA
57.689
42.857
1.15
0.00
0.00
3.18
585
823
8.902806
AGAATGAATAGCCAATATTTTTCGTGA
58.097
29.630
0.00
0.00
34.10
4.35
636
902
9.990360
AGTACAACTTTTCTTTTTGAGGAAAAA
57.010
25.926
0.00
0.00
39.76
1.94
782
1049
0.107752
GCTCTCTCTTTGCCCCTCTG
60.108
60.000
0.00
0.00
0.00
3.35
784
1051
0.392327
GTGCTCTCTCTTTGCCCCTC
60.392
60.000
0.00
0.00
0.00
4.30
785
1052
1.682257
GTGCTCTCTCTTTGCCCCT
59.318
57.895
0.00
0.00
0.00
4.79
789
1071
2.394563
GGCCGTGCTCTCTCTTTGC
61.395
63.158
0.00
0.00
0.00
3.68
911
1209
2.997584
CGACTGGGAGGGGAGGAGA
61.998
68.421
0.00
0.00
0.00
3.71
916
1227
1.382695
GGATTCGACTGGGAGGGGA
60.383
63.158
0.00
0.00
0.00
4.81
920
1231
3.231298
GGGGGATTCGACTGGGAG
58.769
66.667
0.00
0.00
0.00
4.30
942
1253
4.293696
TGGGATGGGGTGGGGTGA
62.294
66.667
0.00
0.00
0.00
4.02
948
1259
4.109675
GACGGGTGGGATGGGGTG
62.110
72.222
0.00
0.00
0.00
4.61
953
1264
4.530857
GAGGCGACGGGTGGGATG
62.531
72.222
0.00
0.00
0.00
3.51
971
1282
3.917760
GATCGAGCGGGAGGGGTG
61.918
72.222
0.00
0.00
0.00
4.61
974
1285
3.917760
GTGGATCGAGCGGGAGGG
61.918
72.222
0.00
0.00
0.00
4.30
975
1286
3.917760
GGTGGATCGAGCGGGAGG
61.918
72.222
0.00
0.00
0.00
4.30
976
1287
3.917760
GGGTGGATCGAGCGGGAG
61.918
72.222
0.63
0.00
0.00
4.30
979
1290
4.570663
GACGGGTGGATCGAGCGG
62.571
72.222
11.90
11.90
0.00
5.52
980
1291
4.570663
GGACGGGTGGATCGAGCG
62.571
72.222
0.63
0.00
0.00
5.03
981
1292
4.222847
GGGACGGGTGGATCGAGC
62.223
72.222
0.00
0.00
0.00
5.03
1011
1540
3.288381
AGGAGGAGGGTGAGGGCT
61.288
66.667
0.00
0.00
0.00
5.19
1032
1561
4.150454
AGGGCGAGGAGGAGGAGG
62.150
72.222
0.00
0.00
0.00
4.30
1033
1562
2.520741
GAGGGCGAGGAGGAGGAG
60.521
72.222
0.00
0.00
0.00
3.69
1034
1563
4.507916
CGAGGGCGAGGAGGAGGA
62.508
72.222
0.00
0.00
40.82
3.71
1443
1972
2.926242
GGGTGGGTGAGGACCGAA
60.926
66.667
0.00
0.00
44.23
4.30
1550
2081
1.856265
GCGCACCCTGAAACTGAAGG
61.856
60.000
0.30
0.00
0.00
3.46
1633
2164
2.928361
CGTGCGGTGTCAACTGTC
59.072
61.111
0.00
0.00
34.90
3.51
1634
2165
3.269347
GCGTGCGGTGTCAACTGT
61.269
61.111
0.00
0.00
34.90
3.55
1635
2166
4.354212
CGCGTGCGGTGTCAACTG
62.354
66.667
6.30
0.00
35.56
3.16
1658
2189
4.477975
GACGAGACAGGCGACGGG
62.478
72.222
0.00
0.00
0.00
5.28
1659
2190
1.642037
TAAGACGAGACAGGCGACGG
61.642
60.000
0.00
0.00
0.00
4.79
1660
2191
0.247735
CTAAGACGAGACAGGCGACG
60.248
60.000
0.00
0.00
0.00
5.12
1661
2192
0.523757
GCTAAGACGAGACAGGCGAC
60.524
60.000
0.00
0.00
0.00
5.19
1662
2193
1.654954
GGCTAAGACGAGACAGGCGA
61.655
60.000
0.00
0.00
0.00
5.54
1663
2194
1.226717
GGCTAAGACGAGACAGGCG
60.227
63.158
0.00
0.00
0.00
5.52
1664
2195
1.142097
GGGCTAAGACGAGACAGGC
59.858
63.158
0.00
0.00
0.00
4.85
1665
2196
0.457851
CAGGGCTAAGACGAGACAGG
59.542
60.000
0.00
0.00
0.00
4.00
1666
2197
0.457851
CCAGGGCTAAGACGAGACAG
59.542
60.000
0.00
0.00
0.00
3.51
1667
2198
0.251653
ACCAGGGCTAAGACGAGACA
60.252
55.000
0.00
0.00
0.00
3.41
1668
2199
0.896226
AACCAGGGCTAAGACGAGAC
59.104
55.000
0.00
0.00
0.00
3.36
1669
2200
1.640917
AAACCAGGGCTAAGACGAGA
58.359
50.000
0.00
0.00
0.00
4.04
1670
2201
2.076863
CAAAACCAGGGCTAAGACGAG
58.923
52.381
0.00
0.00
0.00
4.18
1671
2202
1.271163
CCAAAACCAGGGCTAAGACGA
60.271
52.381
0.00
0.00
0.00
4.20
1672
2203
1.165270
CCAAAACCAGGGCTAAGACG
58.835
55.000
0.00
0.00
0.00
4.18
1673
2204
1.074889
TCCCAAAACCAGGGCTAAGAC
59.925
52.381
0.00
0.00
46.36
3.01
1674
2205
1.354368
CTCCCAAAACCAGGGCTAAGA
59.646
52.381
0.00
0.00
46.36
2.10
1675
2206
1.839424
CTCCCAAAACCAGGGCTAAG
58.161
55.000
0.00
0.00
46.36
2.18
1676
2207
0.251608
GCTCCCAAAACCAGGGCTAA
60.252
55.000
0.00
0.00
46.36
3.09
1677
2208
1.140134
AGCTCCCAAAACCAGGGCTA
61.140
55.000
0.00
0.00
46.36
3.93
1678
2209
2.118294
GCTCCCAAAACCAGGGCT
59.882
61.111
0.00
0.00
46.36
5.19
1697
2228
0.106149
AGTGAGACCGACAACAACCC
59.894
55.000
0.00
0.00
0.00
4.11
1698
2229
1.202486
TGAGTGAGACCGACAACAACC
60.202
52.381
0.00
0.00
0.00
3.77
1699
2230
1.859080
GTGAGTGAGACCGACAACAAC
59.141
52.381
0.00
0.00
0.00
3.32
1707
2238
2.001812
CCTTGATGTGAGTGAGACCG
57.998
55.000
0.00
0.00
0.00
4.79
1716
2255
2.308722
GGGGGAGGCCTTGATGTGA
61.309
63.158
6.77
0.00
0.00
3.58
1719
2258
4.883354
GCGGGGGAGGCCTTGATG
62.883
72.222
6.77
0.00
0.00
3.07
1743
2283
1.817099
GAACATCTGGGGAGCAGCG
60.817
63.158
0.00
0.00
0.00
5.18
1745
2285
0.460987
GACGAACATCTGGGGAGCAG
60.461
60.000
0.00
0.00
0.00
4.24
1750
2290
0.673644
GTGTGGACGAACATCTGGGG
60.674
60.000
0.00
0.00
31.49
4.96
1925
2465
3.823304
AGGAGAGCAAATTCAGAAACACC
59.177
43.478
0.00
0.00
0.00
4.16
1999
2552
0.888619
TCTCGTCGCCAATCTTCAGT
59.111
50.000
0.00
0.00
0.00
3.41
2000
2553
1.272781
GTCTCGTCGCCAATCTTCAG
58.727
55.000
0.00
0.00
0.00
3.02
2029
2582
4.957684
ATCGCCATGAGAGCCGCG
62.958
66.667
0.00
0.00
45.76
6.46
2081
2634
2.970324
GACAACCAGCGCCGACAA
60.970
61.111
2.29
0.00
0.00
3.18
2108
2661
1.237285
ACAGATGCTGCGGTTTCACC
61.237
55.000
0.00
0.00
34.37
4.02
2177
2730
6.631016
TGATAGTACCTAAAACAGCACAGAG
58.369
40.000
0.00
0.00
0.00
3.35
2222
2775
3.643763
CTTCCTCGATATCAAGTTCGGG
58.356
50.000
3.12
0.00
36.08
5.14
2306
2859
2.262423
AACCTCAGACCAGCTTGAAC
57.738
50.000
0.00
0.00
0.00
3.18
2422
5070
5.920273
ACGTTTATGAATGCTTTTGGAACAG
59.080
36.000
0.00
0.00
42.39
3.16
2438
5101
5.174216
GCAGGTTGGTGTTAAAACGTTTATG
59.826
40.000
15.03
0.00
0.00
1.90
2454
5117
6.293845
GCAGAGATCAATATTTAGCAGGTTGG
60.294
42.308
0.00
0.00
0.00
3.77
2459
5122
7.493743
ACTTGCAGAGATCAATATTTAGCAG
57.506
36.000
0.00
0.00
0.00
4.24
2482
5145
6.127897
GGCCATCTAATGCATATTTCAGGTAC
60.128
42.308
0.00
0.00
0.00
3.34
2509
5172
4.486574
CCATTTGGTTTTTGGACAATGC
57.513
40.909
0.00
0.00
31.94
3.56
2591
5254
7.126421
AGAGGCACTAATTCTGAAGGATTCTAA
59.874
37.037
0.00
0.00
43.67
2.10
2627
5290
4.503741
TTACAGGAATTTGCACAGCTTC
57.496
40.909
0.00
0.00
0.00
3.86
2699
5363
3.036429
GCTCGCTTGGGTCCTGGAT
62.036
63.158
0.00
0.00
0.00
3.41
2703
5367
1.198759
TTAAGGCTCGCTTGGGTCCT
61.199
55.000
0.00
0.00
0.00
3.85
2795
5461
5.590663
TCTCTATACGACTTGCTGTCTGAAT
59.409
40.000
0.00
3.13
43.25
2.57
2809
5475
3.009143
TCCCAGCATAGCTCTCTATACGA
59.991
47.826
0.00
0.00
36.40
3.43
2811
5477
5.659463
CAATCCCAGCATAGCTCTCTATAC
58.341
45.833
0.00
0.00
36.40
1.47
2895
5561
1.876156
GGTTTTGAGTGAGTGGCTGAG
59.124
52.381
0.00
0.00
0.00
3.35
2900
5566
2.917933
TCTGTGGTTTTGAGTGAGTGG
58.082
47.619
0.00
0.00
0.00
4.00
2978
5644
2.310199
AGCAAAGGCAACCATTGTGGT
61.310
47.619
3.80
0.00
46.01
4.16
2993
5659
2.095768
GCGTGCATCTTCTTACAGCAAA
60.096
45.455
0.00
0.00
36.91
3.68
3013
5679
1.490574
ATCAGTCTCACCCTACTGGC
58.509
55.000
0.00
0.00
42.72
4.85
3086
5753
2.807045
GACACTGCTCGGTGCTCG
60.807
66.667
8.64
0.00
43.37
5.03
3149
5816
5.105146
GGAGAACACAGTCCATACAGAGATT
60.105
44.000
0.00
0.00
32.55
2.40
3155
5822
4.836175
TGTTAGGAGAACACAGTCCATACA
59.164
41.667
0.00
0.00
35.02
2.29
3156
5823
5.047235
ACTGTTAGGAGAACACAGTCCATAC
60.047
44.000
0.00
0.00
46.61
2.39
3196
5863
7.379750
ACACTTATTTCCCGATAGCTAGATTC
58.620
38.462
0.00
0.00
0.00
2.52
3261
5928
2.353958
CCTCACTGGCACTGGCAT
59.646
61.111
5.63
0.00
43.71
4.40
3271
5938
2.863809
ACCCAGTTTTAAGCCTCACTG
58.136
47.619
0.00
0.00
37.07
3.66
3295
5965
1.531677
CCACAGTTGTGCACAAGTTCG
60.532
52.381
32.36
24.79
44.34
3.95
3360
6030
8.554835
TCGAATCTCCTTAGATGTATCACTAG
57.445
38.462
0.00
0.00
41.81
2.57
3386
6056
3.558931
ACTCATGTGAAGTTGGTGTCA
57.441
42.857
0.94
0.00
0.00
3.58
3423
6093
6.938507
TGGAAGCTCCTTAGTACGATTTTTA
58.061
36.000
0.00
0.00
37.46
1.52
3535
6289
5.756195
TGCTAGTGCTATAAAATTGGCAG
57.244
39.130
0.00
0.00
40.48
4.85
3625
6379
3.659092
CGCAGCCCAAAGAACGCA
61.659
61.111
0.00
0.00
0.00
5.24
3746
6508
7.675962
TTATGCGGTAAACAAACAAGACTAT
57.324
32.000
0.00
0.00
0.00
2.12
3809
6572
8.457261
GCAGACTGATTCAGTATTTTGAGAAAT
58.543
33.333
19.00
0.00
45.44
2.17
3831
6594
8.791327
TGAATTGATGTTTATACTTCAGCAGA
57.209
30.769
2.94
0.00
38.97
4.26
3850
6613
8.954950
AAGGAAGAGTGTATCTACATGAATTG
57.045
34.615
0.00
0.00
37.23
2.32
3851
6614
9.965902
AAAAGGAAGAGTGTATCTACATGAATT
57.034
29.630
0.00
0.00
37.23
2.17
3860
6623
6.174720
TGACACAAAAGGAAGAGTGTATCT
57.825
37.500
0.00
0.00
44.48
1.98
3896
6659
6.128090
GCATGATACACATATCCAGTTGATGG
60.128
42.308
0.00
0.00
43.28
3.51
4055
6819
5.125739
AGGAGTACATAACCTTGAGAAGACG
59.874
44.000
0.00
0.00
0.00
4.18
4194
6958
7.286775
TGCAAGACTAAAAAGGGAGTTGTAAAT
59.713
33.333
0.00
0.00
0.00
1.40
4260
7035
7.606456
TCACTGAAGGGAGTTGTATTTATCAAC
59.394
37.037
0.00
0.00
43.51
3.18
4269
7044
1.000506
GCGTCACTGAAGGGAGTTGTA
59.999
52.381
0.00
0.00
0.00
2.41
4270
7045
0.249911
GCGTCACTGAAGGGAGTTGT
60.250
55.000
0.00
0.00
0.00
3.32
4271
7046
0.034059
AGCGTCACTGAAGGGAGTTG
59.966
55.000
0.00
0.00
0.00
3.16
4272
7047
2.442056
AGCGTCACTGAAGGGAGTT
58.558
52.632
0.00
0.00
0.00
3.01
4298
7073
3.170791
AGCCGTTGATAGACATCACAG
57.829
47.619
0.00
0.00
40.94
3.66
4589
7364
0.037882
ATATCCTCGACGCCAGCATG
60.038
55.000
0.00
0.00
0.00
4.06
4595
7370
1.603172
CCTTGTGATATCCTCGACGCC
60.603
57.143
0.00
0.00
0.00
5.68
4724
7499
4.215613
GGGAGTGTGATCTTACCAACAAAC
59.784
45.833
0.00
0.00
0.00
2.93
4747
7522
0.105039
GATGAGGTGACGGGGCTTAG
59.895
60.000
0.00
0.00
0.00
2.18
4817
7592
9.292751
TCCCTACTCCATACATATATCAGAGTA
57.707
37.037
0.00
0.00
34.98
2.59
5063
7841
0.249405
TACACGAAACACGACCACCC
60.249
55.000
0.00
0.00
45.77
4.61
5103
7881
2.100991
GCAAGCAAATCCTCGGCG
59.899
61.111
0.00
0.00
0.00
6.46
5113
7891
0.107268
TGCTCAGAGACTGCAAGCAA
59.893
50.000
0.00
0.00
38.03
3.91
5177
7955
4.329545
GAGGCACGCCACCAAGGA
62.330
66.667
11.35
0.00
41.22
3.36
5220
7998
2.820037
GCCGCTACCTGTTCCAGC
60.820
66.667
0.00
0.00
0.00
4.85
5248
8026
2.280797
AAGCTCTGCGCCGTCAAA
60.281
55.556
4.18
0.00
40.39
2.69
5602
8380
1.953138
GCGGCTGACCATCATCTCG
60.953
63.158
0.00
0.00
34.57
4.04
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.