Multiple sequence alignment - TraesCS7B01G154300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G154300 chr7B 100.000 3596 0 0 1 3596 205713870 205717465 0.000000e+00 6641.0
1 TraesCS7B01G154300 chr7D 97.551 2695 45 6 917 3596 234126595 234129283 0.000000e+00 4591.0
2 TraesCS7B01G154300 chr7A 95.087 1201 48 6 917 2114 247062674 247063866 0.000000e+00 1881.0
3 TraesCS7B01G154300 chr7A 91.545 887 71 4 2131 3016 247063848 247064731 0.000000e+00 1219.0
4 TraesCS7B01G154300 chr7A 89.020 510 39 8 3095 3596 247064750 247065250 1.830000e-172 616.0
5 TraesCS7B01G154300 chr7A 84.181 531 65 9 403 917 56869063 56868536 6.930000e-137 497.0
6 TraesCS7B01G154300 chr6B 94.321 405 20 3 1 402 376376108 376376512 5.100000e-173 617.0
7 TraesCS7B01G154300 chr6B 92.611 406 26 4 1 402 191347101 191346696 6.690000e-162 580.0
8 TraesCS7B01G154300 chr2B 93.350 406 23 4 1 402 429640046 429640451 6.650000e-167 597.0
9 TraesCS7B01G154300 chr2B 92.840 405 26 3 1 402 400322611 400323015 5.170000e-163 584.0
10 TraesCS7B01G154300 chr4B 92.457 411 27 4 1 407 370469583 370469173 5.170000e-163 584.0
11 TraesCS7B01G154300 chr4B 83.073 384 36 14 561 917 561171348 561170967 4.480000e-84 322.0
12 TraesCS7B01G154300 chr5B 92.611 406 26 4 1 402 233265235 233265640 6.690000e-162 580.0
13 TraesCS7B01G154300 chr5B 92.611 406 27 3 1 403 233288562 233288967 6.690000e-162 580.0
14 TraesCS7B01G154300 chr5B 86.446 332 43 1 404 733 288261337 288261668 2.640000e-96 363.0
15 TraesCS7B01G154300 chr5B 83.198 369 52 9 2653 3016 611281524 611281161 2.680000e-86 329.0
16 TraesCS7B01G154300 chr3B 92.611 406 27 3 1 403 231981052 231981457 6.690000e-162 580.0
17 TraesCS7B01G154300 chr3B 80.415 337 61 4 994 1327 239255434 239255100 5.960000e-63 252.0
18 TraesCS7B01G154300 chr1B 92.611 406 26 4 1 402 155452060 155452465 6.690000e-162 580.0
19 TraesCS7B01G154300 chr1B 79.389 131 26 1 598 728 161538580 161538709 1.370000e-14 91.6
20 TraesCS7B01G154300 chr1B 78.626 131 27 1 598 728 161568245 161568374 6.400000e-13 86.1
21 TraesCS7B01G154300 chr6D 85.531 546 46 14 403 917 119108599 119109142 1.140000e-149 540.0
22 TraesCS7B01G154300 chr1A 83.859 539 60 16 403 917 306104307 306104842 4.170000e-134 488.0
23 TraesCS7B01G154300 chr4D 82.267 547 63 17 403 917 103256900 103256356 3.300000e-120 442.0
24 TraesCS7B01G154300 chr6A 90.390 333 29 2 403 733 602622292 602622623 5.510000e-118 435.0
25 TraesCS7B01G154300 chr5D 83.596 317 42 9 2653 2964 494756296 494755985 4.540000e-74 289.0
26 TraesCS7B01G154300 chr3A 80.240 334 65 1 995 1327 192857441 192857108 2.140000e-62 250.0
27 TraesCS7B01G154300 chr3D 80.000 335 66 1 994 1327 162183864 162183530 2.770000e-61 246.0
28 TraesCS7B01G154300 chr5A 79.580 333 66 1 403 733 171221387 171221055 1.670000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G154300 chr7B 205713870 205717465 3595 False 6641.000000 6641 100.000 1 3596 1 chr7B.!!$F1 3595
1 TraesCS7B01G154300 chr7D 234126595 234129283 2688 False 4591.000000 4591 97.551 917 3596 1 chr7D.!!$F1 2679
2 TraesCS7B01G154300 chr7A 247062674 247065250 2576 False 1238.666667 1881 91.884 917 3596 3 chr7A.!!$F1 2679
3 TraesCS7B01G154300 chr7A 56868536 56869063 527 True 497.000000 497 84.181 403 917 1 chr7A.!!$R1 514
4 TraesCS7B01G154300 chr6D 119108599 119109142 543 False 540.000000 540 85.531 403 917 1 chr6D.!!$F1 514
5 TraesCS7B01G154300 chr1A 306104307 306104842 535 False 488.000000 488 83.859 403 917 1 chr1A.!!$F1 514
6 TraesCS7B01G154300 chr4D 103256356 103256900 544 True 442.000000 442 82.267 403 917 1 chr4D.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.031721 AGCACTTTGAGCAAGCAAGC 59.968 50.0 0.0 0.0 35.65 4.01 F
395 396 0.179020 TCACCCAGGAAGCACTTGTG 60.179 55.0 0.0 0.0 0.00 3.33 F
2145 2191 0.116143 AGGAGAAGAGTGAGGTGGCT 59.884 55.0 0.0 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1559 0.252881 TGGCTCTCTTCCTCCACCAT 60.253 55.0 0.0 0.0 0.0 3.55 R
2254 2300 0.181587 TCCCCGTTGTCAGAAGCAAA 59.818 50.0 0.0 0.0 0.0 3.68 R
3020 3070 0.398522 ACAGTGTGAGTGGGAGTGGA 60.399 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.165944 GTCAATTGAACTCGGTGGCG 59.834 55.000 10.35 0.00 0.00 5.69
20 21 1.154225 CAATTGAACTCGGTGGCGC 60.154 57.895 0.00 0.00 0.00 6.53
21 22 2.332654 AATTGAACTCGGTGGCGCC 61.333 57.895 22.73 22.73 0.00 6.53
31 32 4.545706 GTGGCGCCGGATGGATCA 62.546 66.667 23.90 0.00 37.49 2.92
32 33 3.791586 TGGCGCCGGATGGATCAA 61.792 61.111 23.90 0.00 37.49 2.57
33 34 2.515991 GGCGCCGGATGGATCAAA 60.516 61.111 12.58 0.00 37.49 2.69
34 35 1.898574 GGCGCCGGATGGATCAAAT 60.899 57.895 12.58 0.00 37.49 2.32
35 36 1.576421 GCGCCGGATGGATCAAATC 59.424 57.895 5.05 0.00 37.49 2.17
36 37 1.862123 CGCCGGATGGATCAAATCG 59.138 57.895 5.05 0.00 37.49 3.34
37 38 1.568612 CGCCGGATGGATCAAATCGG 61.569 60.000 5.05 9.40 37.49 4.18
38 39 0.535102 GCCGGATGGATCAAATCGGT 60.535 55.000 5.05 0.00 37.49 4.69
39 40 1.229428 CCGGATGGATCAAATCGGTG 58.771 55.000 0.00 0.00 37.49 4.94
40 41 1.229428 CGGATGGATCAAATCGGTGG 58.771 55.000 0.00 0.00 0.00 4.61
41 42 1.609208 GGATGGATCAAATCGGTGGG 58.391 55.000 0.00 0.00 0.00 4.61
42 43 0.954452 GATGGATCAAATCGGTGGGC 59.046 55.000 0.00 0.00 0.00 5.36
43 44 0.468029 ATGGATCAAATCGGTGGGCC 60.468 55.000 0.00 0.00 0.00 5.80
53 54 2.430367 GGTGGGCCGAGTTTGACT 59.570 61.111 0.00 0.00 0.00 3.41
54 55 1.228154 GGTGGGCCGAGTTTGACTT 60.228 57.895 0.00 0.00 0.00 3.01
55 56 0.822121 GGTGGGCCGAGTTTGACTTT 60.822 55.000 0.00 0.00 0.00 2.66
56 57 1.029681 GTGGGCCGAGTTTGACTTTT 58.970 50.000 0.00 0.00 0.00 2.27
57 58 1.028905 TGGGCCGAGTTTGACTTTTG 58.971 50.000 0.00 0.00 0.00 2.44
58 59 0.313987 GGGCCGAGTTTGACTTTTGG 59.686 55.000 0.00 0.00 0.00 3.28
59 60 1.029681 GGCCGAGTTTGACTTTTGGT 58.970 50.000 0.00 0.00 0.00 3.67
60 61 1.407618 GGCCGAGTTTGACTTTTGGTT 59.592 47.619 0.00 0.00 0.00 3.67
61 62 2.159156 GGCCGAGTTTGACTTTTGGTTT 60.159 45.455 0.00 0.00 0.00 3.27
62 63 2.857748 GCCGAGTTTGACTTTTGGTTTG 59.142 45.455 0.00 0.00 0.00 2.93
63 64 3.443976 CCGAGTTTGACTTTTGGTTTGG 58.556 45.455 0.00 0.00 0.00 3.28
64 65 3.129638 CCGAGTTTGACTTTTGGTTTGGA 59.870 43.478 0.00 0.00 0.00 3.53
65 66 4.102649 CGAGTTTGACTTTTGGTTTGGAC 58.897 43.478 0.00 0.00 0.00 4.02
66 67 4.380023 CGAGTTTGACTTTTGGTTTGGACA 60.380 41.667 0.00 0.00 0.00 4.02
67 68 5.660460 GAGTTTGACTTTTGGTTTGGACAT 58.340 37.500 0.00 0.00 0.00 3.06
68 69 6.459024 CGAGTTTGACTTTTGGTTTGGACATA 60.459 38.462 0.00 0.00 0.00 2.29
69 70 7.360113 AGTTTGACTTTTGGTTTGGACATAT 57.640 32.000 0.00 0.00 0.00 1.78
70 71 7.209475 AGTTTGACTTTTGGTTTGGACATATG 58.791 34.615 0.00 0.00 0.00 1.78
71 72 6.723298 TTGACTTTTGGTTTGGACATATGT 57.277 33.333 8.43 8.43 0.00 2.29
72 73 6.083098 TGACTTTTGGTTTGGACATATGTG 57.917 37.500 14.43 0.00 0.00 3.21
73 74 5.010516 TGACTTTTGGTTTGGACATATGTGG 59.989 40.000 14.43 0.00 0.00 4.17
74 75 5.144100 ACTTTTGGTTTGGACATATGTGGA 58.856 37.500 14.43 0.00 0.00 4.02
75 76 5.779771 ACTTTTGGTTTGGACATATGTGGAT 59.220 36.000 14.43 0.00 0.00 3.41
76 77 6.951198 ACTTTTGGTTTGGACATATGTGGATA 59.049 34.615 14.43 0.00 0.00 2.59
77 78 7.619302 ACTTTTGGTTTGGACATATGTGGATAT 59.381 33.333 14.43 0.00 0.00 1.63
78 79 6.957920 TTGGTTTGGACATATGTGGATATG 57.042 37.500 14.43 0.00 44.98 1.78
79 80 6.259346 TGGTTTGGACATATGTGGATATGA 57.741 37.500 14.43 0.00 42.96 2.15
80 81 6.298361 TGGTTTGGACATATGTGGATATGAG 58.702 40.000 14.43 0.00 42.96 2.90
81 82 6.101005 TGGTTTGGACATATGTGGATATGAGA 59.899 38.462 14.43 0.00 42.96 3.27
82 83 6.998074 GGTTTGGACATATGTGGATATGAGAA 59.002 38.462 14.43 0.00 42.96 2.87
83 84 7.173907 GGTTTGGACATATGTGGATATGAGAAG 59.826 40.741 14.43 0.00 42.96 2.85
84 85 6.364568 TGGACATATGTGGATATGAGAAGG 57.635 41.667 14.43 0.00 42.96 3.46
85 86 5.846164 TGGACATATGTGGATATGAGAAGGT 59.154 40.000 14.43 0.00 42.96 3.50
86 87 6.169094 GGACATATGTGGATATGAGAAGGTG 58.831 44.000 14.43 0.00 42.96 4.00
87 88 6.119240 ACATATGTGGATATGAGAAGGTGG 57.881 41.667 7.78 0.00 42.96 4.61
88 89 5.608437 ACATATGTGGATATGAGAAGGTGGT 59.392 40.000 7.78 0.00 42.96 4.16
89 90 6.101734 ACATATGTGGATATGAGAAGGTGGTT 59.898 38.462 7.78 0.00 42.96 3.67
90 91 4.220693 TGTGGATATGAGAAGGTGGTTG 57.779 45.455 0.00 0.00 0.00 3.77
91 92 3.843619 TGTGGATATGAGAAGGTGGTTGA 59.156 43.478 0.00 0.00 0.00 3.18
92 93 4.080919 TGTGGATATGAGAAGGTGGTTGAG 60.081 45.833 0.00 0.00 0.00 3.02
93 94 3.455910 TGGATATGAGAAGGTGGTTGAGG 59.544 47.826 0.00 0.00 0.00 3.86
94 95 3.181450 GGATATGAGAAGGTGGTTGAGGG 60.181 52.174 0.00 0.00 0.00 4.30
95 96 0.329596 ATGAGAAGGTGGTTGAGGGC 59.670 55.000 0.00 0.00 0.00 5.19
96 97 0.768221 TGAGAAGGTGGTTGAGGGCT 60.768 55.000 0.00 0.00 0.00 5.19
97 98 0.402121 GAGAAGGTGGTTGAGGGCTT 59.598 55.000 0.00 0.00 0.00 4.35
98 99 0.853530 AGAAGGTGGTTGAGGGCTTT 59.146 50.000 0.00 0.00 0.00 3.51
99 100 2.039879 GAGAAGGTGGTTGAGGGCTTTA 59.960 50.000 0.00 0.00 0.00 1.85
100 101 2.040412 AGAAGGTGGTTGAGGGCTTTAG 59.960 50.000 0.00 0.00 0.00 1.85
101 102 1.742308 AGGTGGTTGAGGGCTTTAGA 58.258 50.000 0.00 0.00 0.00 2.10
102 103 1.630878 AGGTGGTTGAGGGCTTTAGAG 59.369 52.381 0.00 0.00 0.00 2.43
120 121 8.430801 CTTTAGAGCATATCACTAAGCACTTT 57.569 34.615 0.00 0.00 31.23 2.66
121 122 7.776933 TTAGAGCATATCACTAAGCACTTTG 57.223 36.000 0.00 0.00 0.00 2.77
122 123 5.982356 AGAGCATATCACTAAGCACTTTGA 58.018 37.500 0.00 0.00 0.00 2.69
123 124 6.047870 AGAGCATATCACTAAGCACTTTGAG 58.952 40.000 0.00 0.00 0.00 3.02
124 125 4.574013 AGCATATCACTAAGCACTTTGAGC 59.426 41.667 0.00 0.00 0.00 4.26
125 126 4.333649 GCATATCACTAAGCACTTTGAGCA 59.666 41.667 0.00 0.00 0.00 4.26
126 127 5.163723 GCATATCACTAAGCACTTTGAGCAA 60.164 40.000 0.00 0.00 0.00 3.91
127 128 6.484540 CATATCACTAAGCACTTTGAGCAAG 58.515 40.000 0.00 0.00 38.64 4.01
128 129 2.549754 TCACTAAGCACTTTGAGCAAGC 59.450 45.455 0.00 0.00 35.65 4.01
129 130 2.291465 CACTAAGCACTTTGAGCAAGCA 59.709 45.455 0.00 0.00 35.65 3.91
130 131 2.951642 ACTAAGCACTTTGAGCAAGCAA 59.048 40.909 0.00 0.00 35.65 3.91
131 132 2.503920 AAGCACTTTGAGCAAGCAAG 57.496 45.000 0.00 0.00 35.65 4.01
132 133 0.031721 AGCACTTTGAGCAAGCAAGC 59.968 50.000 0.00 0.00 35.65 4.01
133 134 0.942884 GCACTTTGAGCAAGCAAGCC 60.943 55.000 0.00 0.00 35.65 4.35
134 135 0.386476 CACTTTGAGCAAGCAAGCCA 59.614 50.000 0.00 0.00 35.65 4.75
135 136 1.000506 CACTTTGAGCAAGCAAGCCAT 59.999 47.619 0.00 0.00 35.65 4.40
136 137 1.690352 ACTTTGAGCAAGCAAGCCATT 59.310 42.857 0.00 0.00 35.65 3.16
137 138 2.892852 ACTTTGAGCAAGCAAGCCATTA 59.107 40.909 0.00 0.00 35.65 1.90
138 139 3.321682 ACTTTGAGCAAGCAAGCCATTAA 59.678 39.130 0.00 0.00 35.65 1.40
139 140 3.581024 TTGAGCAAGCAAGCCATTAAG 57.419 42.857 0.00 0.00 34.23 1.85
140 141 1.203052 TGAGCAAGCAAGCCATTAAGC 59.797 47.619 0.00 0.00 34.23 3.09
141 142 1.203052 GAGCAAGCAAGCCATTAAGCA 59.797 47.619 0.00 0.00 34.23 3.91
142 143 1.619827 AGCAAGCAAGCCATTAAGCAA 59.380 42.857 0.00 0.00 34.23 3.91
143 144 1.728425 GCAAGCAAGCCATTAAGCAAC 59.272 47.619 0.00 0.00 34.23 4.17
144 145 2.867251 GCAAGCAAGCCATTAAGCAACA 60.867 45.455 0.00 0.00 34.23 3.33
145 146 2.730550 AGCAAGCCATTAAGCAACAC 57.269 45.000 0.00 0.00 34.23 3.32
146 147 1.273327 AGCAAGCCATTAAGCAACACC 59.727 47.619 0.00 0.00 34.23 4.16
147 148 1.273327 GCAAGCCATTAAGCAACACCT 59.727 47.619 0.00 0.00 34.23 4.00
148 149 2.672195 GCAAGCCATTAAGCAACACCTC 60.672 50.000 0.00 0.00 34.23 3.85
149 150 2.557924 CAAGCCATTAAGCAACACCTCA 59.442 45.455 0.00 0.00 34.23 3.86
150 151 3.091633 AGCCATTAAGCAACACCTCAT 57.908 42.857 0.00 0.00 34.23 2.90
151 152 3.019564 AGCCATTAAGCAACACCTCATC 58.980 45.455 0.00 0.00 34.23 2.92
152 153 2.099756 GCCATTAAGCAACACCTCATCC 59.900 50.000 0.00 0.00 0.00 3.51
153 154 2.689983 CCATTAAGCAACACCTCATCCC 59.310 50.000 0.00 0.00 0.00 3.85
154 155 3.355378 CATTAAGCAACACCTCATCCCA 58.645 45.455 0.00 0.00 0.00 4.37
155 156 3.737559 TTAAGCAACACCTCATCCCAT 57.262 42.857 0.00 0.00 0.00 4.00
156 157 2.610438 AAGCAACACCTCATCCCATT 57.390 45.000 0.00 0.00 0.00 3.16
157 158 2.610438 AGCAACACCTCATCCCATTT 57.390 45.000 0.00 0.00 0.00 2.32
158 159 2.893424 AGCAACACCTCATCCCATTTT 58.107 42.857 0.00 0.00 0.00 1.82
159 160 4.046286 AGCAACACCTCATCCCATTTTA 57.954 40.909 0.00 0.00 0.00 1.52
160 161 4.415596 AGCAACACCTCATCCCATTTTAA 58.584 39.130 0.00 0.00 0.00 1.52
161 162 5.025453 AGCAACACCTCATCCCATTTTAAT 58.975 37.500 0.00 0.00 0.00 1.40
162 163 6.194235 AGCAACACCTCATCCCATTTTAATA 58.806 36.000 0.00 0.00 0.00 0.98
163 164 6.322201 AGCAACACCTCATCCCATTTTAATAG 59.678 38.462 0.00 0.00 0.00 1.73
164 165 6.096846 GCAACACCTCATCCCATTTTAATAGT 59.903 38.462 0.00 0.00 0.00 2.12
165 166 7.284489 GCAACACCTCATCCCATTTTAATAGTA 59.716 37.037 0.00 0.00 0.00 1.82
166 167 9.354673 CAACACCTCATCCCATTTTAATAGTAT 57.645 33.333 0.00 0.00 0.00 2.12
167 168 9.936329 AACACCTCATCCCATTTTAATAGTATT 57.064 29.630 0.17 0.17 0.00 1.89
168 169 9.354673 ACACCTCATCCCATTTTAATAGTATTG 57.645 33.333 5.61 0.00 0.00 1.90
169 170 8.796475 CACCTCATCCCATTTTAATAGTATTGG 58.204 37.037 5.61 0.00 0.00 3.16
170 171 7.451566 ACCTCATCCCATTTTAATAGTATTGGC 59.548 37.037 5.61 0.00 0.00 4.52
171 172 7.671398 CCTCATCCCATTTTAATAGTATTGGCT 59.329 37.037 5.61 0.00 0.00 4.75
172 173 9.082313 CTCATCCCATTTTAATAGTATTGGCTT 57.918 33.333 5.61 0.00 0.00 4.35
173 174 9.432982 TCATCCCATTTTAATAGTATTGGCTTT 57.567 29.630 5.61 0.00 0.00 3.51
174 175 9.696917 CATCCCATTTTAATAGTATTGGCTTTC 57.303 33.333 5.61 0.00 0.00 2.62
175 176 8.245195 TCCCATTTTAATAGTATTGGCTTTCC 57.755 34.615 5.61 0.00 0.00 3.13
176 177 8.065007 TCCCATTTTAATAGTATTGGCTTTCCT 58.935 33.333 5.61 0.00 0.00 3.36
177 178 9.362151 CCCATTTTAATAGTATTGGCTTTCCTA 57.638 33.333 5.61 0.00 0.00 2.94
183 184 7.922699 AATAGTATTGGCTTTCCTAGAGACT 57.077 36.000 0.00 0.00 0.00 3.24
184 185 5.862678 AGTATTGGCTTTCCTAGAGACTC 57.137 43.478 0.00 0.00 0.00 3.36
185 186 5.273208 AGTATTGGCTTTCCTAGAGACTCA 58.727 41.667 5.02 0.00 0.00 3.41
186 187 5.721960 AGTATTGGCTTTCCTAGAGACTCAA 59.278 40.000 5.02 0.00 0.00 3.02
187 188 5.707066 ATTGGCTTTCCTAGAGACTCAAT 57.293 39.130 5.02 0.00 0.00 2.57
188 189 4.478206 TGGCTTTCCTAGAGACTCAATG 57.522 45.455 5.02 0.00 0.00 2.82
189 190 3.840666 TGGCTTTCCTAGAGACTCAATGT 59.159 43.478 5.02 0.00 0.00 2.71
190 191 4.187694 GGCTTTCCTAGAGACTCAATGTG 58.812 47.826 5.02 0.00 0.00 3.21
191 192 4.081420 GGCTTTCCTAGAGACTCAATGTGA 60.081 45.833 5.02 0.00 0.00 3.58
192 193 5.396213 GGCTTTCCTAGAGACTCAATGTGAT 60.396 44.000 5.02 0.00 0.00 3.06
193 194 5.752955 GCTTTCCTAGAGACTCAATGTGATC 59.247 44.000 5.02 0.00 0.00 2.92
194 195 6.406849 GCTTTCCTAGAGACTCAATGTGATCT 60.407 42.308 5.02 0.00 0.00 2.75
195 196 7.487822 TTTCCTAGAGACTCAATGTGATCTT 57.512 36.000 5.02 0.00 0.00 2.40
196 197 6.462552 TCCTAGAGACTCAATGTGATCTTG 57.537 41.667 5.02 0.00 0.00 3.02
197 198 5.362143 TCCTAGAGACTCAATGTGATCTTGG 59.638 44.000 5.02 12.35 36.37 3.61
198 199 5.362143 CCTAGAGACTCAATGTGATCTTGGA 59.638 44.000 5.02 0.00 36.76 3.53
199 200 5.954153 AGAGACTCAATGTGATCTTGGAT 57.046 39.130 5.02 0.00 0.00 3.41
200 201 5.916318 AGAGACTCAATGTGATCTTGGATC 58.084 41.667 5.02 1.04 0.00 3.36
201 202 5.424573 AGAGACTCAATGTGATCTTGGATCA 59.575 40.000 5.02 6.17 0.00 2.92
202 203 5.426504 AGACTCAATGTGATCTTGGATCAC 58.573 41.667 24.99 24.99 46.28 3.06
203 204 5.189342 AGACTCAATGTGATCTTGGATCACT 59.811 40.000 28.84 17.82 46.25 3.41
204 205 6.382282 AGACTCAATGTGATCTTGGATCACTA 59.618 38.462 28.84 20.13 46.25 2.74
205 206 6.950842 ACTCAATGTGATCTTGGATCACTAA 58.049 36.000 28.84 17.35 46.25 2.24
206 207 7.397221 ACTCAATGTGATCTTGGATCACTAAA 58.603 34.615 28.84 16.83 46.25 1.85
207 208 7.884877 ACTCAATGTGATCTTGGATCACTAAAA 59.115 33.333 28.84 16.57 46.25 1.52
208 209 8.044060 TCAATGTGATCTTGGATCACTAAAAC 57.956 34.615 28.84 11.95 46.25 2.43
209 210 7.665145 TCAATGTGATCTTGGATCACTAAAACA 59.335 33.333 28.84 15.81 46.25 2.83
210 211 7.621428 ATGTGATCTTGGATCACTAAAACAG 57.379 36.000 28.84 0.00 46.25 3.16
211 212 6.768483 TGTGATCTTGGATCACTAAAACAGA 58.232 36.000 28.84 12.69 46.25 3.41
212 213 7.223584 TGTGATCTTGGATCACTAAAACAGAA 58.776 34.615 28.84 12.16 46.25 3.02
213 214 7.719193 TGTGATCTTGGATCACTAAAACAGAAA 59.281 33.333 28.84 11.63 46.25 2.52
214 215 8.567948 GTGATCTTGGATCACTAAAACAGAAAA 58.432 33.333 24.66 0.00 43.62 2.29
215 216 9.300681 TGATCTTGGATCACTAAAACAGAAAAT 57.699 29.630 6.17 0.00 0.00 1.82
216 217 9.565213 GATCTTGGATCACTAAAACAGAAAATG 57.435 33.333 0.00 0.00 0.00 2.32
217 218 8.463930 TCTTGGATCACTAAAACAGAAAATGT 57.536 30.769 0.00 0.00 46.97 2.71
218 219 9.567776 TCTTGGATCACTAAAACAGAAAATGTA 57.432 29.630 0.00 0.00 43.00 2.29
219 220 9.831737 CTTGGATCACTAAAACAGAAAATGTAG 57.168 33.333 0.00 0.00 43.00 2.74
220 221 9.567776 TTGGATCACTAAAACAGAAAATGTAGA 57.432 29.630 0.00 0.00 43.00 2.59
221 222 9.219603 TGGATCACTAAAACAGAAAATGTAGAG 57.780 33.333 0.00 0.00 43.00 2.43
222 223 9.220767 GGATCACTAAAACAGAAAATGTAGAGT 57.779 33.333 0.00 0.00 43.00 3.24
224 225 8.603242 TCACTAAAACAGAAAATGTAGAGTCC 57.397 34.615 0.00 0.00 43.00 3.85
225 226 8.429641 TCACTAAAACAGAAAATGTAGAGTCCT 58.570 33.333 0.00 0.00 43.00 3.85
226 227 8.499162 CACTAAAACAGAAAATGTAGAGTCCTG 58.501 37.037 0.00 0.00 43.00 3.86
227 228 8.429641 ACTAAAACAGAAAATGTAGAGTCCTGA 58.570 33.333 0.00 0.00 43.00 3.86
228 229 7.736447 AAAACAGAAAATGTAGAGTCCTGAG 57.264 36.000 0.00 0.00 43.00 3.35
229 230 4.826556 ACAGAAAATGTAGAGTCCTGAGC 58.173 43.478 0.00 0.00 41.60 4.26
230 231 4.530161 ACAGAAAATGTAGAGTCCTGAGCT 59.470 41.667 0.00 0.00 41.60 4.09
231 232 5.012561 ACAGAAAATGTAGAGTCCTGAGCTT 59.987 40.000 0.00 0.00 41.60 3.74
232 233 5.936956 CAGAAAATGTAGAGTCCTGAGCTTT 59.063 40.000 0.00 0.00 0.00 3.51
233 234 5.936956 AGAAAATGTAGAGTCCTGAGCTTTG 59.063 40.000 0.00 0.00 0.00 2.77
234 235 4.899352 AATGTAGAGTCCTGAGCTTTGT 57.101 40.909 0.00 0.00 0.00 2.83
235 236 3.667497 TGTAGAGTCCTGAGCTTTGTG 57.333 47.619 0.00 0.00 0.00 3.33
236 237 2.289072 TGTAGAGTCCTGAGCTTTGTGC 60.289 50.000 0.00 0.00 43.29 4.57
246 247 3.900446 GCTTTGTGCTTGAGCCAAT 57.100 47.368 0.00 0.00 41.18 3.16
247 248 2.159327 GCTTTGTGCTTGAGCCAATT 57.841 45.000 0.00 0.00 41.18 2.32
248 249 2.064014 GCTTTGTGCTTGAGCCAATTC 58.936 47.619 0.00 0.00 41.18 2.17
249 250 2.288640 GCTTTGTGCTTGAGCCAATTCT 60.289 45.455 0.00 0.00 41.18 2.40
250 251 3.801293 GCTTTGTGCTTGAGCCAATTCTT 60.801 43.478 0.00 0.00 41.18 2.52
251 252 4.374399 CTTTGTGCTTGAGCCAATTCTTT 58.626 39.130 0.00 0.00 41.18 2.52
252 253 3.374220 TGTGCTTGAGCCAATTCTTTG 57.626 42.857 0.00 0.00 41.18 2.77
253 254 2.694628 TGTGCTTGAGCCAATTCTTTGT 59.305 40.909 0.00 0.00 41.18 2.83
254 255 3.243501 TGTGCTTGAGCCAATTCTTTGTC 60.244 43.478 0.00 0.00 41.18 3.18
255 256 2.297033 TGCTTGAGCCAATTCTTTGTCC 59.703 45.455 0.00 0.00 41.18 4.02
256 257 2.560105 GCTTGAGCCAATTCTTTGTCCT 59.440 45.455 0.00 0.00 34.31 3.85
257 258 3.006217 GCTTGAGCCAATTCTTTGTCCTT 59.994 43.478 0.00 0.00 34.31 3.36
258 259 4.553323 CTTGAGCCAATTCTTTGTCCTTG 58.447 43.478 0.00 0.00 0.00 3.61
259 260 2.892852 TGAGCCAATTCTTTGTCCTTGG 59.107 45.455 0.00 0.00 40.89 3.61
262 263 3.967332 CCAATTCTTTGTCCTTGGCAT 57.033 42.857 0.00 0.00 32.44 4.40
263 264 3.853475 CCAATTCTTTGTCCTTGGCATC 58.147 45.455 0.00 0.00 32.44 3.91
264 265 3.512724 CCAATTCTTTGTCCTTGGCATCT 59.487 43.478 0.00 0.00 32.44 2.90
265 266 4.020839 CCAATTCTTTGTCCTTGGCATCTT 60.021 41.667 0.00 0.00 32.44 2.40
266 267 4.796038 ATTCTTTGTCCTTGGCATCTTG 57.204 40.909 0.00 0.00 0.00 3.02
267 268 3.507162 TCTTTGTCCTTGGCATCTTGA 57.493 42.857 0.00 0.00 0.00 3.02
268 269 3.831323 TCTTTGTCCTTGGCATCTTGAA 58.169 40.909 0.00 0.00 0.00 2.69
269 270 4.214310 TCTTTGTCCTTGGCATCTTGAAA 58.786 39.130 0.00 0.00 0.00 2.69
270 271 4.279169 TCTTTGTCCTTGGCATCTTGAAAG 59.721 41.667 0.00 0.00 0.00 2.62
271 272 2.517959 TGTCCTTGGCATCTTGAAAGG 58.482 47.619 0.00 0.00 40.52 3.11
272 273 1.821136 GTCCTTGGCATCTTGAAAGGG 59.179 52.381 0.00 0.00 39.76 3.95
273 274 0.533951 CCTTGGCATCTTGAAAGGGC 59.466 55.000 0.00 0.00 36.36 5.19
274 275 1.553706 CTTGGCATCTTGAAAGGGCT 58.446 50.000 0.00 0.00 0.00 5.19
275 276 1.475682 CTTGGCATCTTGAAAGGGCTC 59.524 52.381 0.00 0.00 0.00 4.70
276 277 0.323725 TGGCATCTTGAAAGGGCTCC 60.324 55.000 7.30 0.00 0.00 4.70
277 278 0.323725 GGCATCTTGAAAGGGCTCCA 60.324 55.000 7.30 0.00 0.00 3.86
278 279 0.813821 GCATCTTGAAAGGGCTCCAC 59.186 55.000 0.00 0.00 0.00 4.02
279 280 1.887956 GCATCTTGAAAGGGCTCCACA 60.888 52.381 0.00 0.00 0.00 4.17
280 281 2.731572 CATCTTGAAAGGGCTCCACAT 58.268 47.619 0.00 0.00 0.00 3.21
281 282 2.496899 TCTTGAAAGGGCTCCACATC 57.503 50.000 0.00 0.00 0.00 3.06
282 283 1.988107 TCTTGAAAGGGCTCCACATCT 59.012 47.619 0.00 0.00 0.00 2.90
283 284 2.376518 TCTTGAAAGGGCTCCACATCTT 59.623 45.455 0.00 0.00 0.00 2.40
284 285 2.496899 TGAAAGGGCTCCACATCTTC 57.503 50.000 0.00 0.00 0.00 2.87
285 286 1.988107 TGAAAGGGCTCCACATCTTCT 59.012 47.619 0.00 0.00 0.00 2.85
286 287 2.376518 TGAAAGGGCTCCACATCTTCTT 59.623 45.455 0.00 0.00 0.00 2.52
287 288 2.503895 AAGGGCTCCACATCTTCTTG 57.496 50.000 0.00 0.00 0.00 3.02
288 289 1.366319 AGGGCTCCACATCTTCTTGT 58.634 50.000 0.00 0.00 0.00 3.16
289 290 1.280421 AGGGCTCCACATCTTCTTGTC 59.720 52.381 0.00 0.00 0.00 3.18
290 291 1.680249 GGGCTCCACATCTTCTTGTCC 60.680 57.143 0.00 0.00 0.00 4.02
291 292 1.003580 GGCTCCACATCTTCTTGTCCA 59.996 52.381 0.00 0.00 0.00 4.02
292 293 2.356535 GGCTCCACATCTTCTTGTCCAT 60.357 50.000 0.00 0.00 0.00 3.41
293 294 3.118261 GGCTCCACATCTTCTTGTCCATA 60.118 47.826 0.00 0.00 0.00 2.74
294 295 3.873952 GCTCCACATCTTCTTGTCCATAC 59.126 47.826 0.00 0.00 0.00 2.39
295 296 4.446371 CTCCACATCTTCTTGTCCATACC 58.554 47.826 0.00 0.00 0.00 2.73
296 297 3.843619 TCCACATCTTCTTGTCCATACCA 59.156 43.478 0.00 0.00 0.00 3.25
297 298 3.941483 CCACATCTTCTTGTCCATACCAC 59.059 47.826 0.00 0.00 0.00 4.16
298 299 4.323792 CCACATCTTCTTGTCCATACCACT 60.324 45.833 0.00 0.00 0.00 4.00
299 300 5.104941 CCACATCTTCTTGTCCATACCACTA 60.105 44.000 0.00 0.00 0.00 2.74
300 301 5.812642 CACATCTTCTTGTCCATACCACTAC 59.187 44.000 0.00 0.00 0.00 2.73
301 302 5.483937 ACATCTTCTTGTCCATACCACTACA 59.516 40.000 0.00 0.00 0.00 2.74
302 303 6.156949 ACATCTTCTTGTCCATACCACTACAT 59.843 38.462 0.00 0.00 0.00 2.29
303 304 6.620877 TCTTCTTGTCCATACCACTACATT 57.379 37.500 0.00 0.00 0.00 2.71
304 305 6.406370 TCTTCTTGTCCATACCACTACATTG 58.594 40.000 0.00 0.00 0.00 2.82
305 306 5.755409 TCTTGTCCATACCACTACATTGT 57.245 39.130 0.00 0.00 0.00 2.71
306 307 6.121776 TCTTGTCCATACCACTACATTGTT 57.878 37.500 0.00 0.00 0.00 2.83
307 308 5.937540 TCTTGTCCATACCACTACATTGTTG 59.062 40.000 0.00 0.00 0.00 3.33
308 309 4.584874 TGTCCATACCACTACATTGTTGG 58.415 43.478 6.06 6.06 0.00 3.77
309 310 4.287326 TGTCCATACCACTACATTGTTGGA 59.713 41.667 13.30 7.18 0.00 3.53
310 311 4.634443 GTCCATACCACTACATTGTTGGAC 59.366 45.833 15.22 15.22 43.43 4.02
311 312 4.534500 TCCATACCACTACATTGTTGGACT 59.466 41.667 13.30 0.00 0.00 3.85
312 313 5.013704 TCCATACCACTACATTGTTGGACTT 59.986 40.000 13.30 0.00 0.00 3.01
313 314 6.213802 TCCATACCACTACATTGTTGGACTTA 59.786 38.462 13.30 0.00 0.00 2.24
314 315 7.054124 CCATACCACTACATTGTTGGACTTAT 58.946 38.462 13.30 0.52 0.00 1.73
315 316 7.226720 CCATACCACTACATTGTTGGACTTATC 59.773 40.741 13.30 0.00 0.00 1.75
316 317 6.374417 ACCACTACATTGTTGGACTTATCT 57.626 37.500 13.30 0.00 0.00 1.98
317 318 6.173339 ACCACTACATTGTTGGACTTATCTG 58.827 40.000 13.30 0.00 0.00 2.90
318 319 6.013725 ACCACTACATTGTTGGACTTATCTGA 60.014 38.462 13.30 0.00 0.00 3.27
319 320 6.878923 CCACTACATTGTTGGACTTATCTGAA 59.121 38.462 1.86 0.00 0.00 3.02
320 321 7.390440 CCACTACATTGTTGGACTTATCTGAAA 59.610 37.037 1.86 0.00 0.00 2.69
321 322 8.950210 CACTACATTGTTGGACTTATCTGAAAT 58.050 33.333 0.00 0.00 0.00 2.17
325 326 9.466497 ACATTGTTGGACTTATCTGAAATATGT 57.534 29.630 0.00 0.00 0.00 2.29
380 381 9.651913 ATGTTGACATTAATTACCAAAATCACC 57.348 29.630 0.00 0.00 31.37 4.02
381 382 8.091449 TGTTGACATTAATTACCAAAATCACCC 58.909 33.333 0.00 0.00 0.00 4.61
382 383 7.782897 TGACATTAATTACCAAAATCACCCA 57.217 32.000 0.00 0.00 0.00 4.51
383 384 7.835822 TGACATTAATTACCAAAATCACCCAG 58.164 34.615 0.00 0.00 0.00 4.45
384 385 7.093552 TGACATTAATTACCAAAATCACCCAGG 60.094 37.037 0.00 0.00 0.00 4.45
385 386 6.957020 ACATTAATTACCAAAATCACCCAGGA 59.043 34.615 0.00 0.00 0.00 3.86
386 387 7.456269 ACATTAATTACCAAAATCACCCAGGAA 59.544 33.333 0.00 0.00 0.00 3.36
387 388 7.475137 TTAATTACCAAAATCACCCAGGAAG 57.525 36.000 0.00 0.00 0.00 3.46
388 389 1.632589 ACCAAAATCACCCAGGAAGC 58.367 50.000 0.00 0.00 0.00 3.86
389 390 1.133199 ACCAAAATCACCCAGGAAGCA 60.133 47.619 0.00 0.00 0.00 3.91
390 391 1.273327 CCAAAATCACCCAGGAAGCAC 59.727 52.381 0.00 0.00 0.00 4.40
391 392 2.242043 CAAAATCACCCAGGAAGCACT 58.758 47.619 0.00 0.00 0.00 4.40
392 393 2.629617 CAAAATCACCCAGGAAGCACTT 59.370 45.455 0.00 0.00 0.00 3.16
393 394 1.915141 AATCACCCAGGAAGCACTTG 58.085 50.000 0.00 0.00 0.00 3.16
394 395 0.773644 ATCACCCAGGAAGCACTTGT 59.226 50.000 0.00 0.00 0.00 3.16
395 396 0.179020 TCACCCAGGAAGCACTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
396 397 1.529244 ACCCAGGAAGCACTTGTGC 60.529 57.895 16.98 16.98 0.00 4.57
431 432 1.000486 AGGACTCCTGCGCCTTCTA 60.000 57.895 4.18 0.00 29.57 2.10
492 495 1.771854 TGCCCCTTCTCGCCAAATATA 59.228 47.619 0.00 0.00 0.00 0.86
498 501 2.148916 TCTCGCCAAATATAGCACGG 57.851 50.000 0.00 0.00 0.00 4.94
500 503 0.753867 TCGCCAAATATAGCACGGGA 59.246 50.000 0.00 0.00 0.00 5.14
507 510 4.504864 CCAAATATAGCACGGGATCCTCAA 60.505 45.833 12.58 0.00 0.00 3.02
549 552 1.892819 ATCCCGAGCAGTGACACTGG 61.893 60.000 31.47 17.91 46.01 4.00
565 568 1.228245 TGGCTTCTTCACCTGGTGC 60.228 57.895 22.02 8.96 32.98 5.01
581 584 2.049063 GCGAGACGTCCTGCAACT 60.049 61.111 20.92 0.00 0.00 3.16
619 622 0.962855 GCAAGGGTTTGGCCTCTCTC 60.963 60.000 3.32 0.00 37.43 3.20
675 678 0.666274 AACGCTTGCATCTTCGACGA 60.666 50.000 0.00 0.00 0.00 4.20
677 680 1.344226 CGCTTGCATCTTCGACGACA 61.344 55.000 0.00 0.00 0.00 4.35
694 697 2.110967 CAAGCAGCCCTCCATCACG 61.111 63.158 0.00 0.00 0.00 4.35
746 781 3.247442 CGCATGTGCACAAAATCATTCT 58.753 40.909 25.72 0.00 42.21 2.40
750 785 4.827304 TGTGCACAAAATCATTCTCGAA 57.173 36.364 19.28 0.00 0.00 3.71
761 796 7.475771 AAATCATTCTCGAAAGATAGCACTC 57.524 36.000 0.00 0.00 40.84 3.51
793 828 0.253044 GCTGAGCAACCCCATGTCTA 59.747 55.000 0.00 0.00 0.00 2.59
796 831 3.624777 CTGAGCAACCCCATGTCTATTT 58.375 45.455 0.00 0.00 0.00 1.40
819 858 1.487976 CTCCTAGCTTCCATGCCTTCA 59.512 52.381 0.00 0.00 0.00 3.02
824 863 1.180029 GCTTCCATGCCTTCATGTGT 58.820 50.000 4.80 0.00 46.64 3.72
825 864 2.025981 AGCTTCCATGCCTTCATGTGTA 60.026 45.455 4.80 0.00 46.64 2.90
871 911 3.668447 ACCTCATGCTGTACAACTCTTG 58.332 45.455 0.00 0.00 0.00 3.02
874 914 4.516698 CCTCATGCTGTACAACTCTTGTTT 59.483 41.667 0.00 0.00 42.22 2.83
1337 1377 1.078497 TGTCCATCGCGCCTGATTT 60.078 52.632 0.00 0.00 0.00 2.17
1445 1485 1.364626 CTGAGCACACGGAAGATGGC 61.365 60.000 0.00 0.00 0.00 4.40
1485 1525 2.267961 GCGTTGGAACCCTCCGAT 59.732 61.111 0.00 0.00 45.85 4.18
1820 1863 2.034879 CAACACGCGGCAGGAAGAT 61.035 57.895 12.47 0.00 0.00 2.40
1961 2004 0.266152 GATGAGGGGAAGGAGGAGGA 59.734 60.000 0.00 0.00 0.00 3.71
1962 2005 0.267356 ATGAGGGGAAGGAGGAGGAG 59.733 60.000 0.00 0.00 0.00 3.69
1963 2006 1.074850 GAGGGGAAGGAGGAGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
2005 2048 2.359975 GGAGGGAGGTTGCAACGG 60.360 66.667 22.67 0.00 0.00 4.44
2145 2191 0.116143 AGGAGAAGAGTGAGGTGGCT 59.884 55.000 0.00 0.00 0.00 4.75
2247 2293 2.952310 GCCAAAAGGGATGACAGATACC 59.048 50.000 0.00 0.00 40.01 2.73
2254 2300 1.683917 GGATGACAGATACCGAGTGCT 59.316 52.381 0.00 0.00 0.00 4.40
2273 2319 0.181587 TTTGCTTCTGACAACGGGGA 59.818 50.000 0.00 0.00 0.00 4.81
2320 2366 4.629122 AGAGGAGGAGAATGGAAAGATGA 58.371 43.478 0.00 0.00 0.00 2.92
2430 2476 1.810030 GTGGTTCGAGCGGATGGAC 60.810 63.158 0.00 0.00 0.00 4.02
2457 2503 2.541346 CGTTCCATGGACGATCAATGAG 59.459 50.000 23.87 2.12 0.00 2.90
2481 2527 2.624838 TGCTGATGAGATGATAGCGACA 59.375 45.455 0.00 0.00 37.20 4.35
2560 2606 4.025061 GCAATCCTTCTCGAGATTCATGTG 60.025 45.833 17.44 11.37 30.29 3.21
2579 2625 3.119137 TGTGTAGTCAGGAATGATGGTCG 60.119 47.826 0.00 0.00 0.00 4.79
2958 3005 4.464008 TGTTCATAGCCTTGAATCATCCC 58.536 43.478 2.60 0.00 37.88 3.85
2970 3017 3.528905 TGAATCATCCCATGAGTTCCCTT 59.471 43.478 0.00 0.00 43.53 3.95
2971 3018 3.872459 ATCATCCCATGAGTTCCCTTC 57.128 47.619 0.00 0.00 43.53 3.46
2972 3019 2.850833 TCATCCCATGAGTTCCCTTCT 58.149 47.619 0.00 0.00 33.59 2.85
3020 3070 5.751243 AAGCACGTCTCACAAAAGTTATT 57.249 34.783 0.00 0.00 0.00 1.40
3133 3184 0.257905 GAGGTTATTCCACCCCCACC 59.742 60.000 0.00 0.00 37.58 4.61
3496 3562 3.816523 TCCCCTCGTCAAAAATTACACAC 59.183 43.478 0.00 0.00 0.00 3.82
3520 3586 6.024049 CGAGCACTCCAATCAATTAAAACTC 58.976 40.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.165944 CGCCACCGAGTTCAATTGAC 59.834 55.000 7.89 3.85 36.29 3.18
1 2 1.573829 GCGCCACCGAGTTCAATTGA 61.574 55.000 3.38 3.38 36.29 2.57
2 3 1.154225 GCGCCACCGAGTTCAATTG 60.154 57.895 0.00 0.00 36.29 2.32
3 4 2.332654 GGCGCCACCGAGTTCAATT 61.333 57.895 24.80 0.00 36.29 2.32
4 5 2.746277 GGCGCCACCGAGTTCAAT 60.746 61.111 24.80 0.00 36.29 2.57
14 15 4.545706 TGATCCATCCGGCGCCAC 62.546 66.667 28.98 0.00 0.00 5.01
15 16 2.623094 ATTTGATCCATCCGGCGCCA 62.623 55.000 28.98 8.41 0.00 5.69
16 17 1.856265 GATTTGATCCATCCGGCGCC 61.856 60.000 19.07 19.07 0.00 6.53
17 18 1.576421 GATTTGATCCATCCGGCGC 59.424 57.895 0.00 0.00 0.00 6.53
18 19 1.568612 CCGATTTGATCCATCCGGCG 61.569 60.000 0.00 0.00 0.00 6.46
19 20 0.535102 ACCGATTTGATCCATCCGGC 60.535 55.000 0.00 0.00 0.00 6.13
20 21 1.229428 CACCGATTTGATCCATCCGG 58.771 55.000 0.00 0.00 0.00 5.14
21 22 1.229428 CCACCGATTTGATCCATCCG 58.771 55.000 0.00 0.00 0.00 4.18
22 23 1.609208 CCCACCGATTTGATCCATCC 58.391 55.000 0.00 0.00 0.00 3.51
23 24 0.954452 GCCCACCGATTTGATCCATC 59.046 55.000 0.00 0.00 0.00 3.51
24 25 0.468029 GGCCCACCGATTTGATCCAT 60.468 55.000 0.00 0.00 0.00 3.41
25 26 1.077068 GGCCCACCGATTTGATCCA 60.077 57.895 0.00 0.00 0.00 3.41
26 27 3.841870 GGCCCACCGATTTGATCC 58.158 61.111 0.00 0.00 0.00 3.36
36 37 0.822121 AAAGTCAAACTCGGCCCACC 60.822 55.000 0.00 0.00 0.00 4.61
37 38 1.029681 AAAAGTCAAACTCGGCCCAC 58.970 50.000 0.00 0.00 0.00 4.61
38 39 1.028905 CAAAAGTCAAACTCGGCCCA 58.971 50.000 0.00 0.00 0.00 5.36
39 40 0.313987 CCAAAAGTCAAACTCGGCCC 59.686 55.000 0.00 0.00 0.00 5.80
40 41 1.029681 ACCAAAAGTCAAACTCGGCC 58.970 50.000 0.00 0.00 0.00 6.13
41 42 2.857748 CAAACCAAAAGTCAAACTCGGC 59.142 45.455 0.00 0.00 0.00 5.54
42 43 3.129638 TCCAAACCAAAAGTCAAACTCGG 59.870 43.478 0.00 0.00 0.00 4.63
43 44 4.102649 GTCCAAACCAAAAGTCAAACTCG 58.897 43.478 0.00 0.00 0.00 4.18
44 45 5.066968 TGTCCAAACCAAAAGTCAAACTC 57.933 39.130 0.00 0.00 0.00 3.01
45 46 5.675684 ATGTCCAAACCAAAAGTCAAACT 57.324 34.783 0.00 0.00 0.00 2.66
46 47 6.983890 ACATATGTCCAAACCAAAAGTCAAAC 59.016 34.615 1.41 0.00 0.00 2.93
47 48 6.983307 CACATATGTCCAAACCAAAAGTCAAA 59.017 34.615 5.07 0.00 0.00 2.69
48 49 6.462207 CCACATATGTCCAAACCAAAAGTCAA 60.462 38.462 5.07 0.00 0.00 3.18
49 50 5.010516 CCACATATGTCCAAACCAAAAGTCA 59.989 40.000 5.07 0.00 0.00 3.41
50 51 5.242838 TCCACATATGTCCAAACCAAAAGTC 59.757 40.000 5.07 0.00 0.00 3.01
51 52 5.144100 TCCACATATGTCCAAACCAAAAGT 58.856 37.500 5.07 0.00 0.00 2.66
52 53 5.720371 TCCACATATGTCCAAACCAAAAG 57.280 39.130 5.07 0.00 0.00 2.27
53 54 7.617329 TCATATCCACATATGTCCAAACCAAAA 59.383 33.333 5.07 0.00 41.92 2.44
54 55 7.122048 TCATATCCACATATGTCCAAACCAAA 58.878 34.615 5.07 0.00 41.92 3.28
55 56 6.667661 TCATATCCACATATGTCCAAACCAA 58.332 36.000 5.07 0.00 41.92 3.67
56 57 6.101005 TCTCATATCCACATATGTCCAAACCA 59.899 38.462 5.07 0.00 41.92 3.67
57 58 6.533730 TCTCATATCCACATATGTCCAAACC 58.466 40.000 5.07 0.00 41.92 3.27
58 59 7.173907 CCTTCTCATATCCACATATGTCCAAAC 59.826 40.741 5.07 0.00 41.92 2.93
59 60 7.147320 ACCTTCTCATATCCACATATGTCCAAA 60.147 37.037 5.07 0.00 41.92 3.28
60 61 6.329986 ACCTTCTCATATCCACATATGTCCAA 59.670 38.462 5.07 0.00 41.92 3.53
61 62 5.846164 ACCTTCTCATATCCACATATGTCCA 59.154 40.000 5.07 0.00 41.92 4.02
62 63 6.169094 CACCTTCTCATATCCACATATGTCC 58.831 44.000 5.07 0.00 41.92 4.02
63 64 6.169094 CCACCTTCTCATATCCACATATGTC 58.831 44.000 5.07 0.00 41.92 3.06
64 65 5.608437 ACCACCTTCTCATATCCACATATGT 59.392 40.000 1.41 1.41 41.92 2.29
65 66 6.119240 ACCACCTTCTCATATCCACATATG 57.881 41.667 0.00 0.00 42.42 1.78
66 67 6.329986 TCAACCACCTTCTCATATCCACATAT 59.670 38.462 0.00 0.00 0.00 1.78
67 68 5.665360 TCAACCACCTTCTCATATCCACATA 59.335 40.000 0.00 0.00 0.00 2.29
68 69 4.474651 TCAACCACCTTCTCATATCCACAT 59.525 41.667 0.00 0.00 0.00 3.21
69 70 3.843619 TCAACCACCTTCTCATATCCACA 59.156 43.478 0.00 0.00 0.00 4.17
70 71 4.446371 CTCAACCACCTTCTCATATCCAC 58.554 47.826 0.00 0.00 0.00 4.02
71 72 3.455910 CCTCAACCACCTTCTCATATCCA 59.544 47.826 0.00 0.00 0.00 3.41
72 73 3.181450 CCCTCAACCACCTTCTCATATCC 60.181 52.174 0.00 0.00 0.00 2.59
73 74 3.745797 GCCCTCAACCACCTTCTCATATC 60.746 52.174 0.00 0.00 0.00 1.63
74 75 2.173569 GCCCTCAACCACCTTCTCATAT 59.826 50.000 0.00 0.00 0.00 1.78
75 76 1.559682 GCCCTCAACCACCTTCTCATA 59.440 52.381 0.00 0.00 0.00 2.15
76 77 0.329596 GCCCTCAACCACCTTCTCAT 59.670 55.000 0.00 0.00 0.00 2.90
77 78 0.768221 AGCCCTCAACCACCTTCTCA 60.768 55.000 0.00 0.00 0.00 3.27
78 79 0.402121 AAGCCCTCAACCACCTTCTC 59.598 55.000 0.00 0.00 0.00 2.87
79 80 0.853530 AAAGCCCTCAACCACCTTCT 59.146 50.000 0.00 0.00 0.00 2.85
80 81 2.039879 TCTAAAGCCCTCAACCACCTTC 59.960 50.000 0.00 0.00 0.00 3.46
81 82 2.040412 CTCTAAAGCCCTCAACCACCTT 59.960 50.000 0.00 0.00 0.00 3.50
82 83 1.630878 CTCTAAAGCCCTCAACCACCT 59.369 52.381 0.00 0.00 0.00 4.00
83 84 1.950954 GCTCTAAAGCCCTCAACCACC 60.951 57.143 0.00 0.00 43.10 4.61
84 85 1.454201 GCTCTAAAGCCCTCAACCAC 58.546 55.000 0.00 0.00 43.10 4.16
85 86 3.957288 GCTCTAAAGCCCTCAACCA 57.043 52.632 0.00 0.00 43.10 3.67
95 96 8.333908 CAAAGTGCTTAGTGATATGCTCTAAAG 58.666 37.037 0.00 0.00 33.56 1.85
96 97 8.040727 TCAAAGTGCTTAGTGATATGCTCTAAA 58.959 33.333 0.00 0.00 33.56 1.85
97 98 7.555965 TCAAAGTGCTTAGTGATATGCTCTAA 58.444 34.615 0.00 0.00 33.08 2.10
98 99 7.112452 TCAAAGTGCTTAGTGATATGCTCTA 57.888 36.000 0.00 0.00 0.00 2.43
99 100 5.982356 TCAAAGTGCTTAGTGATATGCTCT 58.018 37.500 0.00 0.00 0.00 4.09
100 101 5.277250 GCTCAAAGTGCTTAGTGATATGCTC 60.277 44.000 0.00 0.00 0.00 4.26
101 102 4.574013 GCTCAAAGTGCTTAGTGATATGCT 59.426 41.667 0.00 0.00 0.00 3.79
102 103 4.333649 TGCTCAAAGTGCTTAGTGATATGC 59.666 41.667 0.00 0.00 0.00 3.14
103 104 6.426980 TTGCTCAAAGTGCTTAGTGATATG 57.573 37.500 0.00 0.00 0.00 1.78
104 105 5.065731 GCTTGCTCAAAGTGCTTAGTGATAT 59.934 40.000 0.00 0.00 38.25 1.63
105 106 4.393062 GCTTGCTCAAAGTGCTTAGTGATA 59.607 41.667 0.00 0.00 38.25 2.15
106 107 3.190118 GCTTGCTCAAAGTGCTTAGTGAT 59.810 43.478 0.00 0.00 38.25 3.06
107 108 2.549754 GCTTGCTCAAAGTGCTTAGTGA 59.450 45.455 0.00 0.00 38.25 3.41
108 109 2.291465 TGCTTGCTCAAAGTGCTTAGTG 59.709 45.455 0.00 0.00 38.25 2.74
109 110 2.575532 TGCTTGCTCAAAGTGCTTAGT 58.424 42.857 0.00 0.00 38.25 2.24
110 111 3.562505 CTTGCTTGCTCAAAGTGCTTAG 58.437 45.455 0.00 0.00 38.25 2.18
111 112 2.287788 GCTTGCTTGCTCAAAGTGCTTA 60.288 45.455 0.00 0.00 38.25 3.09
112 113 1.537562 GCTTGCTTGCTCAAAGTGCTT 60.538 47.619 0.00 0.00 38.25 3.91
113 114 0.031721 GCTTGCTTGCTCAAAGTGCT 59.968 50.000 0.00 0.00 38.25 4.40
114 115 0.942884 GGCTTGCTTGCTCAAAGTGC 60.943 55.000 1.96 0.00 38.25 4.40
115 116 0.386476 TGGCTTGCTTGCTCAAAGTG 59.614 50.000 1.96 0.00 38.25 3.16
116 117 1.335145 ATGGCTTGCTTGCTCAAAGT 58.665 45.000 1.96 0.00 38.25 2.66
117 118 2.450609 AATGGCTTGCTTGCTCAAAG 57.549 45.000 1.96 0.00 39.07 2.77
118 119 3.861886 GCTTAATGGCTTGCTTGCTCAAA 60.862 43.478 1.96 0.00 0.00 2.69
119 120 2.353011 GCTTAATGGCTTGCTTGCTCAA 60.353 45.455 1.96 0.00 0.00 3.02
120 121 1.203052 GCTTAATGGCTTGCTTGCTCA 59.797 47.619 1.96 0.00 0.00 4.26
121 122 1.203052 TGCTTAATGGCTTGCTTGCTC 59.797 47.619 1.96 0.00 0.00 4.26
122 123 1.259609 TGCTTAATGGCTTGCTTGCT 58.740 45.000 1.96 0.00 0.00 3.91
123 124 1.728425 GTTGCTTAATGGCTTGCTTGC 59.272 47.619 0.00 0.00 0.00 4.01
124 125 2.733026 GTGTTGCTTAATGGCTTGCTTG 59.267 45.455 0.00 0.00 0.00 4.01
125 126 2.289010 GGTGTTGCTTAATGGCTTGCTT 60.289 45.455 0.00 0.00 0.00 3.91
126 127 1.273327 GGTGTTGCTTAATGGCTTGCT 59.727 47.619 0.00 0.00 0.00 3.91
127 128 1.273327 AGGTGTTGCTTAATGGCTTGC 59.727 47.619 0.00 0.00 0.00 4.01
128 129 2.557924 TGAGGTGTTGCTTAATGGCTTG 59.442 45.455 0.00 0.00 0.00 4.01
129 130 2.875296 TGAGGTGTTGCTTAATGGCTT 58.125 42.857 0.00 0.00 0.00 4.35
130 131 2.584835 TGAGGTGTTGCTTAATGGCT 57.415 45.000 0.00 0.00 0.00 4.75
131 132 2.099756 GGATGAGGTGTTGCTTAATGGC 59.900 50.000 0.00 0.00 0.00 4.40
132 133 2.689983 GGGATGAGGTGTTGCTTAATGG 59.310 50.000 0.00 0.00 0.00 3.16
133 134 3.355378 TGGGATGAGGTGTTGCTTAATG 58.645 45.455 0.00 0.00 0.00 1.90
134 135 3.737559 TGGGATGAGGTGTTGCTTAAT 57.262 42.857 0.00 0.00 0.00 1.40
135 136 3.737559 ATGGGATGAGGTGTTGCTTAA 57.262 42.857 0.00 0.00 0.00 1.85
136 137 3.737559 AATGGGATGAGGTGTTGCTTA 57.262 42.857 0.00 0.00 0.00 3.09
137 138 2.610438 AATGGGATGAGGTGTTGCTT 57.390 45.000 0.00 0.00 0.00 3.91
138 139 2.610438 AAATGGGATGAGGTGTTGCT 57.390 45.000 0.00 0.00 0.00 3.91
139 140 4.799564 TTAAAATGGGATGAGGTGTTGC 57.200 40.909 0.00 0.00 0.00 4.17
140 141 7.645058 ACTATTAAAATGGGATGAGGTGTTG 57.355 36.000 0.00 0.00 0.00 3.33
141 142 9.936329 AATACTATTAAAATGGGATGAGGTGTT 57.064 29.630 0.00 0.00 0.00 3.32
142 143 9.354673 CAATACTATTAAAATGGGATGAGGTGT 57.645 33.333 0.00 0.00 0.00 4.16
143 144 8.796475 CCAATACTATTAAAATGGGATGAGGTG 58.204 37.037 0.00 0.00 0.00 4.00
144 145 7.451566 GCCAATACTATTAAAATGGGATGAGGT 59.548 37.037 0.00 0.00 0.00 3.85
145 146 7.671398 AGCCAATACTATTAAAATGGGATGAGG 59.329 37.037 0.00 1.03 0.00 3.86
146 147 8.641498 AGCCAATACTATTAAAATGGGATGAG 57.359 34.615 0.00 0.00 0.00 2.90
147 148 9.432982 AAAGCCAATACTATTAAAATGGGATGA 57.567 29.630 0.00 0.00 0.00 2.92
148 149 9.696917 GAAAGCCAATACTATTAAAATGGGATG 57.303 33.333 0.00 0.00 0.00 3.51
149 150 8.870116 GGAAAGCCAATACTATTAAAATGGGAT 58.130 33.333 0.00 0.00 0.00 3.85
150 151 8.065007 AGGAAAGCCAATACTATTAAAATGGGA 58.935 33.333 0.00 0.00 36.29 4.37
151 152 8.250143 AGGAAAGCCAATACTATTAAAATGGG 57.750 34.615 0.00 0.00 36.29 4.00
157 158 9.435570 AGTCTCTAGGAAAGCCAATACTATTAA 57.564 33.333 0.00 0.00 36.29 1.40
158 159 9.080097 GAGTCTCTAGGAAAGCCAATACTATTA 57.920 37.037 0.00 0.00 36.29 0.98
159 160 7.565398 TGAGTCTCTAGGAAAGCCAATACTATT 59.435 37.037 0.65 0.00 36.29 1.73
160 161 7.069986 TGAGTCTCTAGGAAAGCCAATACTAT 58.930 38.462 0.65 0.00 36.29 2.12
161 162 6.432581 TGAGTCTCTAGGAAAGCCAATACTA 58.567 40.000 0.65 0.00 36.29 1.82
162 163 5.273208 TGAGTCTCTAGGAAAGCCAATACT 58.727 41.667 0.65 0.00 36.29 2.12
163 164 5.599999 TGAGTCTCTAGGAAAGCCAATAC 57.400 43.478 0.65 0.00 36.29 1.89
164 165 6.156949 ACATTGAGTCTCTAGGAAAGCCAATA 59.843 38.462 2.97 0.00 36.29 1.90
165 166 5.045286 ACATTGAGTCTCTAGGAAAGCCAAT 60.045 40.000 2.97 0.00 36.29 3.16
166 167 4.287067 ACATTGAGTCTCTAGGAAAGCCAA 59.713 41.667 2.97 0.00 36.29 4.52
167 168 3.840666 ACATTGAGTCTCTAGGAAAGCCA 59.159 43.478 2.97 0.00 36.29 4.75
168 169 4.081420 TCACATTGAGTCTCTAGGAAAGCC 60.081 45.833 2.97 0.00 0.00 4.35
169 170 5.078411 TCACATTGAGTCTCTAGGAAAGC 57.922 43.478 2.97 0.00 0.00 3.51
170 171 7.111247 AGATCACATTGAGTCTCTAGGAAAG 57.889 40.000 2.97 0.00 0.00 2.62
171 172 7.326454 CAAGATCACATTGAGTCTCTAGGAAA 58.674 38.462 2.97 0.00 0.00 3.13
172 173 6.127225 CCAAGATCACATTGAGTCTCTAGGAA 60.127 42.308 2.97 0.00 0.00 3.36
173 174 5.362143 CCAAGATCACATTGAGTCTCTAGGA 59.638 44.000 2.97 0.00 0.00 2.94
174 175 5.362143 TCCAAGATCACATTGAGTCTCTAGG 59.638 44.000 0.65 0.00 0.00 3.02
175 176 6.462552 TCCAAGATCACATTGAGTCTCTAG 57.537 41.667 0.65 0.00 0.00 2.43
176 177 6.608808 TGATCCAAGATCACATTGAGTCTCTA 59.391 38.462 3.17 0.00 0.00 2.43
177 178 5.424573 TGATCCAAGATCACATTGAGTCTCT 59.575 40.000 3.17 0.00 0.00 3.10
178 179 5.523188 GTGATCCAAGATCACATTGAGTCTC 59.477 44.000 25.48 0.00 45.61 3.36
179 180 5.426504 GTGATCCAAGATCACATTGAGTCT 58.573 41.667 25.48 0.00 45.61 3.24
180 181 5.731599 GTGATCCAAGATCACATTGAGTC 57.268 43.478 25.48 3.18 45.61 3.36
188 189 7.672983 TTCTGTTTTAGTGATCCAAGATCAC 57.327 36.000 23.84 23.84 46.41 3.06
189 190 8.690203 TTTTCTGTTTTAGTGATCCAAGATCA 57.310 30.769 3.17 3.17 0.00 2.92
190 191 9.565213 CATTTTCTGTTTTAGTGATCCAAGATC 57.435 33.333 0.00 0.00 0.00 2.75
191 192 9.082313 ACATTTTCTGTTTTAGTGATCCAAGAT 57.918 29.630 0.00 0.00 32.90 2.40
192 193 8.463930 ACATTTTCTGTTTTAGTGATCCAAGA 57.536 30.769 0.00 0.00 32.90 3.02
193 194 9.831737 CTACATTTTCTGTTTTAGTGATCCAAG 57.168 33.333 0.00 0.00 39.39 3.61
194 195 9.567776 TCTACATTTTCTGTTTTAGTGATCCAA 57.432 29.630 0.00 0.00 39.39 3.53
195 196 9.219603 CTCTACATTTTCTGTTTTAGTGATCCA 57.780 33.333 0.00 0.00 39.39 3.41
196 197 9.220767 ACTCTACATTTTCTGTTTTAGTGATCC 57.779 33.333 0.00 0.00 39.39 3.36
198 199 9.220767 GGACTCTACATTTTCTGTTTTAGTGAT 57.779 33.333 0.00 0.00 39.39 3.06
199 200 8.429641 AGGACTCTACATTTTCTGTTTTAGTGA 58.570 33.333 0.00 0.00 39.39 3.41
200 201 8.499162 CAGGACTCTACATTTTCTGTTTTAGTG 58.501 37.037 0.00 0.00 39.39 2.74
201 202 8.429641 TCAGGACTCTACATTTTCTGTTTTAGT 58.570 33.333 0.00 0.00 39.39 2.24
202 203 8.833231 TCAGGACTCTACATTTTCTGTTTTAG 57.167 34.615 0.00 0.00 39.39 1.85
203 204 7.387948 GCTCAGGACTCTACATTTTCTGTTTTA 59.612 37.037 0.00 0.00 39.39 1.52
204 205 6.205658 GCTCAGGACTCTACATTTTCTGTTTT 59.794 38.462 0.00 0.00 39.39 2.43
205 206 5.703130 GCTCAGGACTCTACATTTTCTGTTT 59.297 40.000 0.00 0.00 39.39 2.83
206 207 5.012561 AGCTCAGGACTCTACATTTTCTGTT 59.987 40.000 0.00 0.00 39.39 3.16
207 208 4.530161 AGCTCAGGACTCTACATTTTCTGT 59.470 41.667 0.00 0.00 42.13 3.41
208 209 5.083533 AGCTCAGGACTCTACATTTTCTG 57.916 43.478 0.00 0.00 0.00 3.02
209 210 5.753721 AAGCTCAGGACTCTACATTTTCT 57.246 39.130 0.00 0.00 0.00 2.52
210 211 5.703130 ACAAAGCTCAGGACTCTACATTTTC 59.297 40.000 0.00 0.00 0.00 2.29
211 212 5.471456 CACAAAGCTCAGGACTCTACATTTT 59.529 40.000 0.00 0.00 0.00 1.82
212 213 4.999950 CACAAAGCTCAGGACTCTACATTT 59.000 41.667 0.00 0.00 0.00 2.32
213 214 4.573900 CACAAAGCTCAGGACTCTACATT 58.426 43.478 0.00 0.00 0.00 2.71
214 215 3.618507 GCACAAAGCTCAGGACTCTACAT 60.619 47.826 0.00 0.00 41.15 2.29
215 216 2.289072 GCACAAAGCTCAGGACTCTACA 60.289 50.000 0.00 0.00 41.15 2.74
216 217 2.342179 GCACAAAGCTCAGGACTCTAC 58.658 52.381 0.00 0.00 41.15 2.59
217 218 2.751166 GCACAAAGCTCAGGACTCTA 57.249 50.000 0.00 0.00 41.15 2.43
218 219 3.621953 GCACAAAGCTCAGGACTCT 57.378 52.632 0.00 0.00 41.15 3.24
228 229 2.064014 GAATTGGCTCAAGCACAAAGC 58.936 47.619 4.13 0.00 44.36 3.51
229 230 3.655276 AGAATTGGCTCAAGCACAAAG 57.345 42.857 4.13 0.00 44.36 2.77
230 231 4.121317 CAAAGAATTGGCTCAAGCACAAA 58.879 39.130 4.13 0.00 44.36 2.83
231 232 3.132646 ACAAAGAATTGGCTCAAGCACAA 59.867 39.130 4.13 6.38 44.36 3.33
232 233 2.694628 ACAAAGAATTGGCTCAAGCACA 59.305 40.909 4.13 0.00 44.36 4.57
233 234 3.311966 GACAAAGAATTGGCTCAAGCAC 58.688 45.455 4.13 0.00 41.66 4.40
234 235 2.297033 GGACAAAGAATTGGCTCAAGCA 59.703 45.455 4.13 0.00 44.51 3.91
235 236 2.560105 AGGACAAAGAATTGGCTCAAGC 59.440 45.455 0.00 0.00 44.51 4.01
236 237 4.553323 CAAGGACAAAGAATTGGCTCAAG 58.447 43.478 0.00 0.00 44.51 3.02
237 238 3.321682 CCAAGGACAAAGAATTGGCTCAA 59.678 43.478 0.00 0.00 44.51 3.02
238 239 2.892852 CCAAGGACAAAGAATTGGCTCA 59.107 45.455 0.00 0.00 44.51 4.26
239 240 3.582714 CCAAGGACAAAGAATTGGCTC 57.417 47.619 0.00 0.00 44.51 4.70
242 243 3.512724 AGATGCCAAGGACAAAGAATTGG 59.487 43.478 0.00 0.00 44.12 3.16
243 244 4.796038 AGATGCCAAGGACAAAGAATTG 57.204 40.909 0.00 0.00 42.46 2.32
244 245 4.834496 TCAAGATGCCAAGGACAAAGAATT 59.166 37.500 0.00 0.00 0.00 2.17
245 246 4.410099 TCAAGATGCCAAGGACAAAGAAT 58.590 39.130 0.00 0.00 0.00 2.40
246 247 3.831323 TCAAGATGCCAAGGACAAAGAA 58.169 40.909 0.00 0.00 0.00 2.52
247 248 3.507162 TCAAGATGCCAAGGACAAAGA 57.493 42.857 0.00 0.00 0.00 2.52
248 249 4.553323 CTTTCAAGATGCCAAGGACAAAG 58.447 43.478 0.00 0.00 0.00 2.77
249 250 3.321682 CCTTTCAAGATGCCAAGGACAAA 59.678 43.478 0.00 0.00 38.52 2.83
250 251 2.892852 CCTTTCAAGATGCCAAGGACAA 59.107 45.455 0.00 0.00 38.52 3.18
251 252 2.517959 CCTTTCAAGATGCCAAGGACA 58.482 47.619 0.00 0.00 38.52 4.02
252 253 1.821136 CCCTTTCAAGATGCCAAGGAC 59.179 52.381 8.80 0.00 38.52 3.85
253 254 1.892329 GCCCTTTCAAGATGCCAAGGA 60.892 52.381 8.80 0.00 38.52 3.36
254 255 0.533951 GCCCTTTCAAGATGCCAAGG 59.466 55.000 0.00 0.00 36.32 3.61
255 256 1.475682 GAGCCCTTTCAAGATGCCAAG 59.524 52.381 0.00 0.00 0.00 3.61
256 257 1.549203 GAGCCCTTTCAAGATGCCAA 58.451 50.000 0.00 0.00 0.00 4.52
257 258 0.323725 GGAGCCCTTTCAAGATGCCA 60.324 55.000 0.00 0.00 0.00 4.92
258 259 0.323725 TGGAGCCCTTTCAAGATGCC 60.324 55.000 0.00 0.00 0.00 4.40
259 260 0.813821 GTGGAGCCCTTTCAAGATGC 59.186 55.000 0.00 0.00 0.00 3.91
260 261 2.205022 TGTGGAGCCCTTTCAAGATG 57.795 50.000 0.00 0.00 0.00 2.90
261 262 2.579860 AGATGTGGAGCCCTTTCAAGAT 59.420 45.455 0.00 0.00 0.00 2.40
262 263 1.988107 AGATGTGGAGCCCTTTCAAGA 59.012 47.619 0.00 0.00 0.00 3.02
263 264 2.503895 AGATGTGGAGCCCTTTCAAG 57.496 50.000 0.00 0.00 0.00 3.02
264 265 2.376518 AGAAGATGTGGAGCCCTTTCAA 59.623 45.455 0.00 0.00 0.00 2.69
265 266 1.988107 AGAAGATGTGGAGCCCTTTCA 59.012 47.619 0.00 0.00 0.00 2.69
266 267 2.751806 CAAGAAGATGTGGAGCCCTTTC 59.248 50.000 0.00 0.00 0.00 2.62
267 268 2.108952 ACAAGAAGATGTGGAGCCCTTT 59.891 45.455 0.00 0.00 30.82 3.11
268 269 1.707427 ACAAGAAGATGTGGAGCCCTT 59.293 47.619 0.00 0.00 30.82 3.95
269 270 1.280421 GACAAGAAGATGTGGAGCCCT 59.720 52.381 0.00 0.00 32.57 5.19
270 271 1.680249 GGACAAGAAGATGTGGAGCCC 60.680 57.143 0.00 0.00 32.57 5.19
271 272 1.003580 TGGACAAGAAGATGTGGAGCC 59.996 52.381 0.00 0.00 32.57 4.70
272 273 2.479566 TGGACAAGAAGATGTGGAGC 57.520 50.000 0.00 0.00 32.57 4.70
273 274 4.080919 TGGTATGGACAAGAAGATGTGGAG 60.081 45.833 0.00 0.00 32.57 3.86
274 275 3.843619 TGGTATGGACAAGAAGATGTGGA 59.156 43.478 0.00 0.00 32.57 4.02
275 276 3.941483 GTGGTATGGACAAGAAGATGTGG 59.059 47.826 0.00 0.00 32.57 4.17
276 277 4.836825 AGTGGTATGGACAAGAAGATGTG 58.163 43.478 0.00 0.00 32.57 3.21
277 278 5.483937 TGTAGTGGTATGGACAAGAAGATGT 59.516 40.000 0.00 0.00 35.90 3.06
278 279 5.977635 TGTAGTGGTATGGACAAGAAGATG 58.022 41.667 0.00 0.00 0.00 2.90
279 280 6.814954 ATGTAGTGGTATGGACAAGAAGAT 57.185 37.500 0.00 0.00 0.00 2.40
280 281 6.013725 ACAATGTAGTGGTATGGACAAGAAGA 60.014 38.462 0.00 0.00 0.00 2.87
281 282 6.173339 ACAATGTAGTGGTATGGACAAGAAG 58.827 40.000 0.00 0.00 0.00 2.85
282 283 6.121776 ACAATGTAGTGGTATGGACAAGAA 57.878 37.500 0.00 0.00 0.00 2.52
283 284 5.755409 ACAATGTAGTGGTATGGACAAGA 57.245 39.130 0.00 0.00 0.00 3.02
284 285 5.123820 CCAACAATGTAGTGGTATGGACAAG 59.876 44.000 0.00 0.00 0.00 3.16
285 286 5.007034 CCAACAATGTAGTGGTATGGACAA 58.993 41.667 0.00 0.00 0.00 3.18
286 287 4.287326 TCCAACAATGTAGTGGTATGGACA 59.713 41.667 4.24 0.00 31.12 4.02
287 288 4.634443 GTCCAACAATGTAGTGGTATGGAC 59.366 45.833 13.32 13.32 45.97 4.02
288 289 4.534500 AGTCCAACAATGTAGTGGTATGGA 59.466 41.667 4.24 0.77 33.54 3.41
289 290 4.843728 AGTCCAACAATGTAGTGGTATGG 58.156 43.478 4.24 0.00 0.00 2.74
290 291 7.987458 AGATAAGTCCAACAATGTAGTGGTATG 59.013 37.037 4.24 0.00 0.00 2.39
291 292 7.987458 CAGATAAGTCCAACAATGTAGTGGTAT 59.013 37.037 4.24 0.00 0.00 2.73
292 293 7.179516 TCAGATAAGTCCAACAATGTAGTGGTA 59.820 37.037 4.24 0.00 0.00 3.25
293 294 6.013725 TCAGATAAGTCCAACAATGTAGTGGT 60.014 38.462 4.24 0.00 0.00 4.16
294 295 6.406370 TCAGATAAGTCCAACAATGTAGTGG 58.594 40.000 0.00 0.00 0.00 4.00
295 296 7.905604 TTCAGATAAGTCCAACAATGTAGTG 57.094 36.000 0.00 0.00 0.00 2.74
299 300 9.466497 ACATATTTCAGATAAGTCCAACAATGT 57.534 29.630 0.00 0.00 0.00 2.71
354 355 9.651913 GGTGATTTTGGTAATTAATGTCAACAT 57.348 29.630 0.00 0.00 38.41 2.71
355 356 8.091449 GGGTGATTTTGGTAATTAATGTCAACA 58.909 33.333 0.00 0.00 0.00 3.33
356 357 8.091449 TGGGTGATTTTGGTAATTAATGTCAAC 58.909 33.333 0.00 0.00 0.00 3.18
357 358 8.195165 TGGGTGATTTTGGTAATTAATGTCAA 57.805 30.769 0.00 0.00 0.00 3.18
358 359 7.093552 CCTGGGTGATTTTGGTAATTAATGTCA 60.094 37.037 0.00 0.00 0.00 3.58
359 360 7.123547 TCCTGGGTGATTTTGGTAATTAATGTC 59.876 37.037 0.00 0.00 0.00 3.06
360 361 6.957020 TCCTGGGTGATTTTGGTAATTAATGT 59.043 34.615 0.00 0.00 0.00 2.71
361 362 7.416964 TCCTGGGTGATTTTGGTAATTAATG 57.583 36.000 0.00 0.00 0.00 1.90
362 363 7.364673 GCTTCCTGGGTGATTTTGGTAATTAAT 60.365 37.037 0.00 0.00 0.00 1.40
363 364 6.071051 GCTTCCTGGGTGATTTTGGTAATTAA 60.071 38.462 0.00 0.00 0.00 1.40
364 365 5.420739 GCTTCCTGGGTGATTTTGGTAATTA 59.579 40.000 0.00 0.00 0.00 1.40
365 366 4.222810 GCTTCCTGGGTGATTTTGGTAATT 59.777 41.667 0.00 0.00 0.00 1.40
366 367 3.769300 GCTTCCTGGGTGATTTTGGTAAT 59.231 43.478 0.00 0.00 0.00 1.89
367 368 3.161866 GCTTCCTGGGTGATTTTGGTAA 58.838 45.455 0.00 0.00 0.00 2.85
368 369 2.109128 TGCTTCCTGGGTGATTTTGGTA 59.891 45.455 0.00 0.00 0.00 3.25
369 370 1.133199 TGCTTCCTGGGTGATTTTGGT 60.133 47.619 0.00 0.00 0.00 3.67
370 371 1.273327 GTGCTTCCTGGGTGATTTTGG 59.727 52.381 0.00 0.00 0.00 3.28
371 372 2.242043 AGTGCTTCCTGGGTGATTTTG 58.758 47.619 0.00 0.00 0.00 2.44
372 373 2.629617 CAAGTGCTTCCTGGGTGATTTT 59.370 45.455 0.00 0.00 0.00 1.82
373 374 2.242043 CAAGTGCTTCCTGGGTGATTT 58.758 47.619 0.00 0.00 0.00 2.17
374 375 1.145738 ACAAGTGCTTCCTGGGTGATT 59.854 47.619 0.00 0.00 0.00 2.57
375 376 0.773644 ACAAGTGCTTCCTGGGTGAT 59.226 50.000 0.00 0.00 0.00 3.06
376 377 0.179020 CACAAGTGCTTCCTGGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
377 378 2.334307 CACAAGTGCTTCCTGGGTG 58.666 57.895 0.00 0.00 0.00 4.61
378 379 4.907457 CACAAGTGCTTCCTGGGT 57.093 55.556 0.00 0.00 0.00 4.51
388 389 2.023673 TGGAAGGTGAAAGCACAAGTG 58.976 47.619 0.00 0.00 46.96 3.16
389 390 2.024414 GTGGAAGGTGAAAGCACAAGT 58.976 47.619 0.00 0.00 46.96 3.16
390 391 2.023673 TGTGGAAGGTGAAAGCACAAG 58.976 47.619 0.00 0.00 46.96 3.16
391 392 1.748493 GTGTGGAAGGTGAAAGCACAA 59.252 47.619 0.00 0.00 46.96 3.33
392 393 1.388547 GTGTGGAAGGTGAAAGCACA 58.611 50.000 0.00 0.00 46.96 4.57
393 394 0.307760 CGTGTGGAAGGTGAAAGCAC 59.692 55.000 0.00 0.00 44.39 4.40
394 395 0.179234 TCGTGTGGAAGGTGAAAGCA 59.821 50.000 0.00 0.00 36.26 3.91
395 396 0.868406 CTCGTGTGGAAGGTGAAAGC 59.132 55.000 0.00 0.00 0.00 3.51
396 397 1.070134 TCCTCGTGTGGAAGGTGAAAG 59.930 52.381 0.00 0.00 32.39 2.62
397 398 1.124780 TCCTCGTGTGGAAGGTGAAA 58.875 50.000 0.00 0.00 32.39 2.69
398 399 0.391597 GTCCTCGTGTGGAAGGTGAA 59.608 55.000 0.00 0.00 37.93 3.18
399 400 0.469331 AGTCCTCGTGTGGAAGGTGA 60.469 55.000 0.00 0.00 37.93 4.02
400 401 0.038159 GAGTCCTCGTGTGGAAGGTG 60.038 60.000 0.00 0.00 37.93 4.00
401 402 1.186267 GGAGTCCTCGTGTGGAAGGT 61.186 60.000 0.41 0.00 37.93 3.50
431 432 4.569966 GCATTGTCTCATCTTCTTGATCGT 59.430 41.667 0.00 0.00 32.05 3.73
444 445 4.796946 GCCAAAAGATGTTGCATTGTCTCA 60.797 41.667 0.00 0.00 0.00 3.27
492 495 0.107017 CCAATTGAGGATCCCGTGCT 60.107 55.000 8.55 0.00 0.00 4.40
498 501 1.025041 GCGAACCCAATTGAGGATCC 58.975 55.000 16.93 2.48 0.00 3.36
500 503 1.408822 GGAGCGAACCCAATTGAGGAT 60.409 52.381 16.93 7.50 0.00 3.24
507 510 2.046314 CGGTGGAGCGAACCCAAT 60.046 61.111 0.00 0.00 35.12 3.16
549 552 1.294659 CTCGCACCAGGTGAAGAAGC 61.295 60.000 24.96 5.45 35.23 3.86
565 568 0.597637 AACAGTTGCAGGACGTCTCG 60.598 55.000 16.46 7.94 0.00 4.04
581 584 2.897207 CGTAGGGGATGGCGAACA 59.103 61.111 0.00 0.00 0.00 3.18
619 622 0.545171 ACCAGGCAGTGAGGATGATG 59.455 55.000 0.00 0.00 0.00 3.07
654 657 1.071605 GTCGAAGATGCAAGCGTTCT 58.928 50.000 0.00 0.00 40.67 3.01
675 678 1.001641 GTGATGGAGGGCTGCTTGT 60.002 57.895 0.00 0.00 0.00 3.16
677 680 2.270205 CGTGATGGAGGGCTGCTT 59.730 61.111 0.00 0.00 0.00 3.91
712 715 1.586303 CATGCGCGCTTCGTCTCTA 60.586 57.895 33.29 8.79 41.07 2.43
746 781 5.652891 AGAAACCTAGAGTGCTATCTTTCGA 59.347 40.000 0.00 0.00 32.45 3.71
750 785 4.407296 CCCAGAAACCTAGAGTGCTATCTT 59.593 45.833 0.00 0.00 0.00 2.40
761 796 0.107459 GCTCAGCCCCAGAAACCTAG 60.107 60.000 0.00 0.00 0.00 3.02
793 828 2.692041 GCATGGAAGCTAGGAGCAAAAT 59.308 45.455 0.64 0.00 45.56 1.82
796 831 0.107017 GGCATGGAAGCTAGGAGCAA 60.107 55.000 0.64 0.00 45.56 3.91
839 878 3.244700 ACAGCATGAGGTTACAAGAGCTT 60.245 43.478 0.00 0.00 39.69 3.74
874 914 9.358406 ACAGGATGCATATCTTTTCATTGATAA 57.642 29.630 0.00 0.00 42.53 1.75
1337 1377 2.034999 GGCCGGGTTTCACATCCA 59.965 61.111 2.18 0.00 0.00 3.41
1485 1525 1.381327 CGGCCCTCCCTTCTCAGTA 60.381 63.158 0.00 0.00 0.00 2.74
1519 1559 0.252881 TGGCTCTCTTCCTCCACCAT 60.253 55.000 0.00 0.00 0.00 3.55
1593 1633 1.192428 TCTCTTCCTTACCCGCTTCC 58.808 55.000 0.00 0.00 0.00 3.46
1762 1805 4.321718 TCTTTCTGTTCATCTGCCTTCTG 58.678 43.478 0.00 0.00 0.00 3.02
1820 1863 3.652869 AGGGAACTCCACAGAATTCTTCA 59.347 43.478 4.86 0.00 32.90 3.02
1961 2004 1.073722 CATGTCACCACCACAGCCT 59.926 57.895 0.00 0.00 0.00 4.58
1962 2005 2.629656 GCATGTCACCACCACAGCC 61.630 63.158 0.00 0.00 0.00 4.85
1963 2006 2.629656 GGCATGTCACCACCACAGC 61.630 63.158 0.00 0.00 0.00 4.40
2145 2191 0.329261 CCACTTCTTCATCCCCAGCA 59.671 55.000 0.00 0.00 0.00 4.41
2173 2219 2.231964 GCACTTCCTCCAATGCATTTGA 59.768 45.455 9.83 11.25 37.53 2.69
2247 2293 1.220529 TGTCAGAAGCAAAGCACTCG 58.779 50.000 0.00 0.00 0.00 4.18
2254 2300 0.181587 TCCCCGTTGTCAGAAGCAAA 59.818 50.000 0.00 0.00 0.00 3.68
2273 2319 6.851836 TCCTCCACCTTCATTTATCTCCTTAT 59.148 38.462 0.00 0.00 0.00 1.73
2320 2366 1.071699 TCCTCCGCTGTTAACTGCTTT 59.928 47.619 27.94 0.00 38.46 3.51
2430 2476 0.528924 TCGTCCATGGAACGTACCTG 59.471 55.000 25.64 8.92 0.00 4.00
2457 2503 2.348660 GCTATCATCTCATCAGCAGCC 58.651 52.381 0.00 0.00 32.46 4.85
2481 2527 0.250513 GCCGATGTTTCTCCTCCAGT 59.749 55.000 0.00 0.00 0.00 4.00
2560 2606 2.431057 ACCGACCATCATTCCTGACTAC 59.569 50.000 0.00 0.00 33.22 2.73
2579 2625 0.388294 GCATCACCCTACGGTAGACC 59.612 60.000 16.59 0.00 42.04 3.85
2588 2634 3.525609 TGTTATTTCCAGGCATCACCCTA 59.474 43.478 0.00 0.00 40.58 3.53
2958 3005 1.065854 AGCGGAAGAAGGGAACTCATG 60.066 52.381 0.00 0.00 42.68 3.07
3020 3070 0.398522 ACAGTGTGAGTGGGAGTGGA 60.399 55.000 0.00 0.00 0.00 4.02
3133 3184 1.344114 CCCCATTTTTGGACAGTGTGG 59.656 52.381 0.00 0.00 0.00 4.17
3448 3514 3.181467 TGGGAAATGTTTTGCAACCAGAG 60.181 43.478 0.00 0.00 31.02 3.35
3496 3562 5.942872 AGTTTTAATTGATTGGAGTGCTCG 58.057 37.500 0.00 0.00 0.00 5.03
3538 3604 8.075574 CACAATGTTGAGCACAAGAAACTATAA 58.924 33.333 0.00 0.00 39.50 0.98
3544 3610 3.446799 GCACAATGTTGAGCACAAGAAA 58.553 40.909 9.73 0.00 43.01 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.