Multiple sequence alignment - TraesCS7B01G154200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G154200 chr7B 100.000 4563 0 0 1 4563 205388034 205392596 0.000000e+00 8427.0
1 TraesCS7B01G154200 chr7B 80.165 121 24 0 498 618 586699151 586699031 1.750000e-14 91.6
2 TraesCS7B01G154200 chr7D 94.658 2003 89 9 518 2507 234070824 234072821 0.000000e+00 3090.0
3 TraesCS7B01G154200 chr7D 94.360 1312 51 13 3262 4560 234073798 234075099 0.000000e+00 1991.0
4 TraesCS7B01G154200 chr7D 87.943 705 55 13 2496 3188 234072989 234073675 0.000000e+00 804.0
5 TraesCS7B01G154200 chr7D 81.921 177 30 2 9 184 41154112 41153937 1.020000e-31 148.0
6 TraesCS7B01G154200 chr7D 98.077 52 1 0 6 57 234070704 234070755 1.750000e-14 91.6
7 TraesCS7B01G154200 chr7D 94.000 50 2 1 354 403 75358908 75358860 1.760000e-09 75.0
8 TraesCS7B01G154200 chr7D 94.000 50 2 1 354 403 75401036 75400988 1.760000e-09 75.0
9 TraesCS7B01G154200 chr7A 87.536 2776 195 50 488 3188 246708132 246710831 0.000000e+00 3070.0
10 TraesCS7B01G154200 chr7A 94.528 1389 53 16 3185 4562 246710911 246712287 0.000000e+00 2122.0
11 TraesCS7B01G154200 chr4A 91.667 120 9 1 6 125 67608988 67609106 1.020000e-36 165.0
12 TraesCS7B01G154200 chr3D 82.474 97 15 2 510 606 404018110 404018204 2.930000e-12 84.2
13 TraesCS7B01G154200 chr4D 95.833 48 2 0 66 113 423891536 423891489 1.360000e-10 78.7
14 TraesCS7B01G154200 chr6B 86.667 60 8 0 499 558 695999918 695999859 2.950000e-07 67.6
15 TraesCS7B01G154200 chr4B 95.238 42 1 1 72 112 520232164 520232123 1.060000e-06 65.8
16 TraesCS7B01G154200 chr4B 88.462 52 2 4 352 403 98478814 98478767 4.930000e-05 60.2
17 TraesCS7B01G154200 chr3B 90.000 50 4 1 4379 4428 754802573 754802525 3.810000e-06 63.9
18 TraesCS7B01G154200 chr3A 82.857 70 12 0 510 579 526570930 526570999 3.810000e-06 63.9
19 TraesCS7B01G154200 chr1B 97.143 35 0 1 357 391 604300173 604300206 1.770000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G154200 chr7B 205388034 205392596 4562 False 8427.00 8427 100.0000 1 4563 1 chr7B.!!$F1 4562
1 TraesCS7B01G154200 chr7D 234070704 234075099 4395 False 1494.15 3090 93.7595 6 4560 4 chr7D.!!$F1 4554
2 TraesCS7B01G154200 chr7A 246708132 246712287 4155 False 2596.00 3070 91.0320 488 4562 2 chr7A.!!$F1 4074

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 359 0.333312 ACCCACCCACACACAAAGAA 59.667 50.0 0.00 0.0 0.00 2.52 F
1135 1172 0.375106 GCTCGAAGGCTTTCCAATCG 59.625 55.0 0.00 0.0 42.01 3.34 F
1239 1276 0.098728 CGGAAATGTTGCTTAGGGCG 59.901 55.0 0.00 0.0 45.43 6.13 F
2096 2151 0.112995 TCCCAAAACCTGCAGCTGAT 59.887 50.0 20.43 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 1276 0.391263 ACGAACTCCCCGATTTCAGC 60.391 55.0 0.00 0.0 0.0 4.26 R
1981 2036 0.956633 CACATCCACAGTGCTTTGCT 59.043 50.0 0.00 0.0 0.0 3.91 R
3024 3277 0.971386 AAAGAAAGGCATGGCTGGTG 59.029 50.0 24.08 0.0 0.0 4.17 R
3673 4018 0.100503 GCATTACAACACCATCCCGC 59.899 55.0 0.00 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.494625 TCCGGAATAGTTTCATGTATCTTGAAC 59.505 37.037 0.00 0.00 33.03 3.18
54 55 6.351711 GGACTCGGGTAATTGGTTTATAGTT 58.648 40.000 0.00 0.00 0.00 2.24
55 56 6.825213 GGACTCGGGTAATTGGTTTATAGTTT 59.175 38.462 0.00 0.00 0.00 2.66
56 57 7.011763 GGACTCGGGTAATTGGTTTATAGTTTC 59.988 40.741 0.00 0.00 0.00 2.78
57 58 7.627311 ACTCGGGTAATTGGTTTATAGTTTCT 58.373 34.615 0.00 0.00 0.00 2.52
58 59 8.761689 ACTCGGGTAATTGGTTTATAGTTTCTA 58.238 33.333 0.00 0.00 0.00 2.10
59 60 8.947055 TCGGGTAATTGGTTTATAGTTTCTAC 57.053 34.615 0.00 0.00 0.00 2.59
60 61 8.761689 TCGGGTAATTGGTTTATAGTTTCTACT 58.238 33.333 0.00 0.00 38.44 2.57
98 99 9.516314 AGTAAATGAAAGTTTCTAGTGTTTTGC 57.484 29.630 16.33 9.59 0.00 3.68
99 100 9.516314 GTAAATGAAAGTTTCTAGTGTTTTGCT 57.484 29.630 16.33 0.00 0.00 3.91
100 101 8.634475 AAATGAAAGTTTCTAGTGTTTTGCTC 57.366 30.769 16.33 0.00 0.00 4.26
101 102 5.806286 TGAAAGTTTCTAGTGTTTTGCTCG 58.194 37.500 16.33 0.00 0.00 5.03
102 103 3.879932 AGTTTCTAGTGTTTTGCTCGC 57.120 42.857 0.00 0.00 0.00 5.03
103 104 3.467803 AGTTTCTAGTGTTTTGCTCGCT 58.532 40.909 0.00 0.00 0.00 4.93
104 105 3.877508 AGTTTCTAGTGTTTTGCTCGCTT 59.122 39.130 0.00 0.00 0.00 4.68
105 106 4.335594 AGTTTCTAGTGTTTTGCTCGCTTT 59.664 37.500 0.00 0.00 0.00 3.51
106 107 5.526111 AGTTTCTAGTGTTTTGCTCGCTTTA 59.474 36.000 0.00 0.00 0.00 1.85
107 108 6.204882 AGTTTCTAGTGTTTTGCTCGCTTTAT 59.795 34.615 0.00 0.00 0.00 1.40
108 109 6.554334 TTCTAGTGTTTTGCTCGCTTTATT 57.446 33.333 0.00 0.00 0.00 1.40
109 110 6.554334 TCTAGTGTTTTGCTCGCTTTATTT 57.446 33.333 0.00 0.00 0.00 1.40
110 111 6.966021 TCTAGTGTTTTGCTCGCTTTATTTT 58.034 32.000 0.00 0.00 0.00 1.82
111 112 7.422399 TCTAGTGTTTTGCTCGCTTTATTTTT 58.578 30.769 0.00 0.00 0.00 1.94
112 113 8.561212 TCTAGTGTTTTGCTCGCTTTATTTTTA 58.439 29.630 0.00 0.00 0.00 1.52
113 114 7.623268 AGTGTTTTGCTCGCTTTATTTTTAG 57.377 32.000 0.00 0.00 0.00 1.85
114 115 7.422399 AGTGTTTTGCTCGCTTTATTTTTAGA 58.578 30.769 0.00 0.00 0.00 2.10
115 116 7.591426 AGTGTTTTGCTCGCTTTATTTTTAGAG 59.409 33.333 0.00 0.00 0.00 2.43
116 117 7.378728 GTGTTTTGCTCGCTTTATTTTTAGAGT 59.621 33.333 0.00 0.00 0.00 3.24
117 118 7.918562 TGTTTTGCTCGCTTTATTTTTAGAGTT 59.081 29.630 0.00 0.00 0.00 3.01
118 119 8.752254 GTTTTGCTCGCTTTATTTTTAGAGTTT 58.248 29.630 0.00 0.00 0.00 2.66
119 120 8.865590 TTTGCTCGCTTTATTTTTAGAGTTTT 57.134 26.923 0.00 0.00 0.00 2.43
120 121 8.865590 TTGCTCGCTTTATTTTTAGAGTTTTT 57.134 26.923 0.00 0.00 0.00 1.94
154 155 6.184580 ACATAATTCGGTTTTACGCATTCA 57.815 33.333 0.00 0.00 32.38 2.57
161 162 3.360758 CGGTTTTACGCATTCAAGAAAGC 59.639 43.478 0.25 0.25 0.00 3.51
162 163 4.295051 GGTTTTACGCATTCAAGAAAGCA 58.705 39.130 10.17 0.00 34.99 3.91
163 164 4.923281 GGTTTTACGCATTCAAGAAAGCAT 59.077 37.500 10.17 0.00 34.99 3.79
164 165 6.090129 GGTTTTACGCATTCAAGAAAGCATA 58.910 36.000 10.17 0.00 34.99 3.14
165 166 6.251376 GGTTTTACGCATTCAAGAAAGCATAG 59.749 38.462 10.17 0.00 34.99 2.23
167 168 3.012518 ACGCATTCAAGAAAGCATAGCT 58.987 40.909 10.17 0.00 42.56 3.32
189 191 7.568349 AGCTGTTGGATTAGAATTCTATCACA 58.432 34.615 15.82 11.57 0.00 3.58
194 196 4.982916 GGATTAGAATTCTATCACACGCGT 59.017 41.667 15.82 5.58 0.00 6.01
201 203 2.624636 TCTATCACACGCGTAGTCAGA 58.375 47.619 13.44 8.55 0.00 3.27
202 204 3.203716 TCTATCACACGCGTAGTCAGAT 58.796 45.455 13.44 14.05 0.00 2.90
207 209 3.934579 TCACACGCGTAGTCAGATAGTTA 59.065 43.478 13.44 0.00 0.00 2.24
208 210 4.392754 TCACACGCGTAGTCAGATAGTTAA 59.607 41.667 13.44 0.00 0.00 2.01
209 211 4.494764 CACACGCGTAGTCAGATAGTTAAC 59.505 45.833 13.44 0.00 0.00 2.01
210 212 4.394300 ACACGCGTAGTCAGATAGTTAACT 59.606 41.667 13.44 13.68 0.00 2.24
211 213 5.582269 ACACGCGTAGTCAGATAGTTAACTA 59.418 40.000 13.44 17.41 0.00 2.24
212 214 6.259608 ACACGCGTAGTCAGATAGTTAACTAT 59.740 38.462 24.86 24.86 41.56 2.12
213 215 6.574093 CACGCGTAGTCAGATAGTTAACTATG 59.426 42.308 28.61 18.52 39.14 2.23
214 216 5.564504 CGCGTAGTCAGATAGTTAACTATGC 59.435 44.000 28.61 21.02 46.45 3.14
215 217 6.670233 GCGTAGTCAGATAGTTAACTATGCT 58.330 40.000 28.61 21.24 46.43 3.79
216 218 7.140048 GCGTAGTCAGATAGTTAACTATGCTT 58.860 38.462 28.61 13.52 46.43 3.91
217 219 7.324135 GCGTAGTCAGATAGTTAACTATGCTTC 59.676 40.741 28.61 16.90 46.43 3.86
218 220 7.804129 CGTAGTCAGATAGTTAACTATGCTTCC 59.196 40.741 28.61 15.64 39.14 3.46
219 221 7.661536 AGTCAGATAGTTAACTATGCTTCCA 57.338 36.000 28.61 2.95 39.14 3.53
220 222 7.493367 AGTCAGATAGTTAACTATGCTTCCAC 58.507 38.462 28.61 18.73 39.14 4.02
221 223 7.343316 AGTCAGATAGTTAACTATGCTTCCACT 59.657 37.037 28.61 20.02 39.14 4.00
222 224 7.650104 GTCAGATAGTTAACTATGCTTCCACTC 59.350 40.741 28.61 14.05 39.14 3.51
223 225 7.342026 TCAGATAGTTAACTATGCTTCCACTCA 59.658 37.037 28.61 5.46 39.14 3.41
224 226 7.981789 CAGATAGTTAACTATGCTTCCACTCAA 59.018 37.037 28.61 0.32 39.14 3.02
225 227 8.540388 AGATAGTTAACTATGCTTCCACTCAAA 58.460 33.333 28.61 0.00 39.14 2.69
226 228 9.162764 GATAGTTAACTATGCTTCCACTCAAAA 57.837 33.333 28.61 0.00 39.14 2.44
227 229 7.817418 AGTTAACTATGCTTCCACTCAAAAA 57.183 32.000 6.26 0.00 0.00 1.94
228 230 7.875971 AGTTAACTATGCTTCCACTCAAAAAG 58.124 34.615 6.26 0.00 0.00 2.27
229 231 7.719633 AGTTAACTATGCTTCCACTCAAAAAGA 59.280 33.333 6.26 0.00 0.00 2.52
230 232 6.959639 AACTATGCTTCCACTCAAAAAGAA 57.040 33.333 0.00 0.00 0.00 2.52
231 233 6.959639 ACTATGCTTCCACTCAAAAAGAAA 57.040 33.333 0.00 0.00 0.00 2.52
232 234 7.346751 ACTATGCTTCCACTCAAAAAGAAAA 57.653 32.000 0.00 0.00 0.00 2.29
233 235 7.781056 ACTATGCTTCCACTCAAAAAGAAAAA 58.219 30.769 0.00 0.00 0.00 1.94
253 255 3.991605 AAAAACATAGACTGCGCTACG 57.008 42.857 9.73 0.00 0.00 3.51
254 256 2.933495 AAACATAGACTGCGCTACGA 57.067 45.000 9.73 0.00 0.00 3.43
255 257 2.476873 AACATAGACTGCGCTACGAG 57.523 50.000 9.73 0.00 0.00 4.18
256 258 1.664873 ACATAGACTGCGCTACGAGA 58.335 50.000 9.73 0.00 0.00 4.04
257 259 2.014857 ACATAGACTGCGCTACGAGAA 58.985 47.619 9.73 0.00 0.00 2.87
258 260 2.422479 ACATAGACTGCGCTACGAGAAA 59.578 45.455 9.73 0.00 0.00 2.52
259 261 2.539346 TAGACTGCGCTACGAGAAAC 57.461 50.000 9.73 0.00 0.00 2.78
260 262 0.596577 AGACTGCGCTACGAGAAACA 59.403 50.000 9.73 0.00 0.00 2.83
261 263 0.985549 GACTGCGCTACGAGAAACAG 59.014 55.000 9.73 0.00 0.00 3.16
262 264 0.596577 ACTGCGCTACGAGAAACAGA 59.403 50.000 9.73 0.00 0.00 3.41
263 265 1.263776 CTGCGCTACGAGAAACAGAG 58.736 55.000 9.73 0.00 0.00 3.35
264 266 0.879090 TGCGCTACGAGAAACAGAGA 59.121 50.000 9.73 0.00 0.00 3.10
265 267 1.472878 TGCGCTACGAGAAACAGAGAT 59.527 47.619 9.73 0.00 0.00 2.75
266 268 1.849219 GCGCTACGAGAAACAGAGATG 59.151 52.381 0.00 0.00 0.00 2.90
267 269 2.732597 GCGCTACGAGAAACAGAGATGT 60.733 50.000 0.00 0.00 0.00 3.06
268 270 2.848887 CGCTACGAGAAACAGAGATGTG 59.151 50.000 0.00 0.00 0.00 3.21
269 271 2.600867 GCTACGAGAAACAGAGATGTGC 59.399 50.000 0.00 0.00 0.00 4.57
270 272 3.674682 GCTACGAGAAACAGAGATGTGCT 60.675 47.826 0.00 0.00 0.00 4.40
271 273 3.393089 ACGAGAAACAGAGATGTGCTT 57.607 42.857 0.00 0.00 0.00 3.91
272 274 3.733337 ACGAGAAACAGAGATGTGCTTT 58.267 40.909 0.00 0.00 0.00 3.51
273 275 3.743396 ACGAGAAACAGAGATGTGCTTTC 59.257 43.478 0.00 0.00 0.00 2.62
274 276 3.181536 CGAGAAACAGAGATGTGCTTTCG 60.182 47.826 0.00 0.00 0.00 3.46
275 277 2.481952 AGAAACAGAGATGTGCTTTCGC 59.518 45.455 0.00 0.00 0.00 4.70
276 278 1.882912 AACAGAGATGTGCTTTCGCA 58.117 45.000 0.00 0.00 45.60 5.10
288 290 3.595173 TGCTTTCGCAATAAGTAGAGCA 58.405 40.909 0.00 0.00 44.62 4.26
289 291 4.191544 TGCTTTCGCAATAAGTAGAGCAT 58.808 39.130 0.00 0.00 44.62 3.79
290 292 4.034394 TGCTTTCGCAATAAGTAGAGCATG 59.966 41.667 0.00 0.00 44.62 4.06
291 293 4.034510 GCTTTCGCAATAAGTAGAGCATGT 59.965 41.667 0.00 0.00 35.78 3.21
292 294 5.469373 TTTCGCAATAAGTAGAGCATGTG 57.531 39.130 0.00 0.00 0.00 3.21
293 295 2.866156 TCGCAATAAGTAGAGCATGTGC 59.134 45.455 0.00 0.00 42.49 4.57
305 307 2.358939 GCATGTGCTTCCCTGAAAAG 57.641 50.000 0.00 0.00 38.21 2.27
306 308 1.888512 GCATGTGCTTCCCTGAAAAGA 59.111 47.619 0.00 0.00 38.21 2.52
307 309 2.297033 GCATGTGCTTCCCTGAAAAGAA 59.703 45.455 0.00 0.00 38.21 2.52
308 310 3.243839 GCATGTGCTTCCCTGAAAAGAAA 60.244 43.478 0.00 0.00 38.21 2.52
309 311 4.740334 GCATGTGCTTCCCTGAAAAGAAAA 60.740 41.667 0.00 0.00 38.21 2.29
310 312 4.654091 TGTGCTTCCCTGAAAAGAAAAG 57.346 40.909 0.00 0.00 0.00 2.27
311 313 3.384467 TGTGCTTCCCTGAAAAGAAAAGG 59.616 43.478 0.00 0.00 0.00 3.11
312 314 3.636764 GTGCTTCCCTGAAAAGAAAAGGA 59.363 43.478 0.00 0.00 32.43 3.36
313 315 4.099419 GTGCTTCCCTGAAAAGAAAAGGAA 59.901 41.667 0.00 0.00 32.43 3.36
314 316 4.714308 TGCTTCCCTGAAAAGAAAAGGAAA 59.286 37.500 0.00 0.00 33.22 3.13
315 317 5.188751 TGCTTCCCTGAAAAGAAAAGGAAAA 59.811 36.000 0.00 0.00 33.22 2.29
316 318 6.112734 GCTTCCCTGAAAAGAAAAGGAAAAA 58.887 36.000 0.00 0.00 33.22 1.94
351 353 4.596585 CCCCACCCACCCACACAC 62.597 72.222 0.00 0.00 0.00 3.82
352 354 3.814906 CCCACCCACCCACACACA 61.815 66.667 0.00 0.00 0.00 3.72
353 355 2.277072 CCACCCACCCACACACAA 59.723 61.111 0.00 0.00 0.00 3.33
354 356 1.380515 CCACCCACCCACACACAAA 60.381 57.895 0.00 0.00 0.00 2.83
355 357 1.391157 CCACCCACCCACACACAAAG 61.391 60.000 0.00 0.00 0.00 2.77
356 358 0.395036 CACCCACCCACACACAAAGA 60.395 55.000 0.00 0.00 0.00 2.52
357 359 0.333312 ACCCACCCACACACAAAGAA 59.667 50.000 0.00 0.00 0.00 2.52
358 360 1.272760 ACCCACCCACACACAAAGAAA 60.273 47.619 0.00 0.00 0.00 2.52
359 361 1.827969 CCCACCCACACACAAAGAAAA 59.172 47.619 0.00 0.00 0.00 2.29
360 362 2.159114 CCCACCCACACACAAAGAAAAG 60.159 50.000 0.00 0.00 0.00 2.27
361 363 2.757868 CCACCCACACACAAAGAAAAGA 59.242 45.455 0.00 0.00 0.00 2.52
362 364 3.384467 CCACCCACACACAAAGAAAAGAT 59.616 43.478 0.00 0.00 0.00 2.40
363 365 4.362279 CACCCACACACAAAGAAAAGATG 58.638 43.478 0.00 0.00 0.00 2.90
364 366 4.097741 CACCCACACACAAAGAAAAGATGA 59.902 41.667 0.00 0.00 0.00 2.92
365 367 4.709397 ACCCACACACAAAGAAAAGATGAA 59.291 37.500 0.00 0.00 0.00 2.57
366 368 5.186797 ACCCACACACAAAGAAAAGATGAAA 59.813 36.000 0.00 0.00 0.00 2.69
367 369 6.105333 CCCACACACAAAGAAAAGATGAAAA 58.895 36.000 0.00 0.00 0.00 2.29
368 370 6.035975 CCCACACACAAAGAAAAGATGAAAAC 59.964 38.462 0.00 0.00 0.00 2.43
369 371 6.035975 CCACACACAAAGAAAAGATGAAAACC 59.964 38.462 0.00 0.00 0.00 3.27
370 372 5.804979 ACACACAAAGAAAAGATGAAAACCG 59.195 36.000 0.00 0.00 0.00 4.44
371 373 4.803613 ACACAAAGAAAAGATGAAAACCGC 59.196 37.500 0.00 0.00 0.00 5.68
372 374 4.803088 CACAAAGAAAAGATGAAAACCGCA 59.197 37.500 0.00 0.00 0.00 5.69
373 375 5.290643 CACAAAGAAAAGATGAAAACCGCAA 59.709 36.000 0.00 0.00 0.00 4.85
374 376 5.290885 ACAAAGAAAAGATGAAAACCGCAAC 59.709 36.000 0.00 0.00 0.00 4.17
375 377 3.977427 AGAAAAGATGAAAACCGCAACC 58.023 40.909 0.00 0.00 0.00 3.77
376 378 2.415697 AAAGATGAAAACCGCAACCG 57.584 45.000 0.00 0.00 0.00 4.44
377 379 1.314730 AAGATGAAAACCGCAACCGT 58.685 45.000 0.00 0.00 0.00 4.83
378 380 0.591170 AGATGAAAACCGCAACCGTG 59.409 50.000 0.00 0.00 0.00 4.94
388 390 2.281761 CAACCGTGCTTCTGGGCT 60.282 61.111 0.00 0.00 0.00 5.19
389 391 2.032681 AACCGTGCTTCTGGGCTC 59.967 61.111 0.00 0.00 0.00 4.70
390 392 3.553095 AACCGTGCTTCTGGGCTCC 62.553 63.158 0.00 0.00 0.00 4.70
422 424 9.810545 TTTTCTTAGGTATTCCTTTTGTTGTTG 57.189 29.630 0.00 0.00 42.12 3.33
423 425 6.977213 TCTTAGGTATTCCTTTTGTTGTTGC 58.023 36.000 0.00 0.00 42.12 4.17
424 426 4.600692 AGGTATTCCTTTTGTTGTTGCC 57.399 40.909 0.00 0.00 42.12 4.52
425 427 3.964031 AGGTATTCCTTTTGTTGTTGCCA 59.036 39.130 0.00 0.00 42.12 4.92
426 428 4.592778 AGGTATTCCTTTTGTTGTTGCCAT 59.407 37.500 0.00 0.00 42.12 4.40
427 429 5.071653 AGGTATTCCTTTTGTTGTTGCCATT 59.928 36.000 0.00 0.00 42.12 3.16
428 430 5.762711 GGTATTCCTTTTGTTGTTGCCATTT 59.237 36.000 0.00 0.00 0.00 2.32
429 431 6.262049 GGTATTCCTTTTGTTGTTGCCATTTT 59.738 34.615 0.00 0.00 0.00 1.82
430 432 6.772360 ATTCCTTTTGTTGTTGCCATTTTT 57.228 29.167 0.00 0.00 0.00 1.94
431 433 5.557891 TCCTTTTGTTGTTGCCATTTTTG 57.442 34.783 0.00 0.00 0.00 2.44
432 434 4.397417 TCCTTTTGTTGTTGCCATTTTTGG 59.603 37.500 0.00 0.00 0.00 3.28
433 435 4.439837 CCTTTTGTTGTTGCCATTTTTGGG 60.440 41.667 0.00 0.00 0.00 4.12
434 436 3.356529 TTGTTGTTGCCATTTTTGGGT 57.643 38.095 0.00 0.00 0.00 4.51
435 437 3.356529 TGTTGTTGCCATTTTTGGGTT 57.643 38.095 0.00 0.00 0.00 4.11
436 438 3.690460 TGTTGTTGCCATTTTTGGGTTT 58.310 36.364 0.00 0.00 0.00 3.27
437 439 4.082125 TGTTGTTGCCATTTTTGGGTTTT 58.918 34.783 0.00 0.00 0.00 2.43
438 440 4.524328 TGTTGTTGCCATTTTTGGGTTTTT 59.476 33.333 0.00 0.00 0.00 1.94
573 575 7.415989 CGATGGGAGAAATCTGACAATGAAAAT 60.416 37.037 0.00 0.00 0.00 1.82
594 596 4.554960 TGGTTCGGTATTTGGACACATA 57.445 40.909 0.00 0.00 0.00 2.29
605 613 9.614792 GGTATTTGGACACATAGTTTAAGAGAT 57.385 33.333 0.00 0.00 0.00 2.75
723 760 3.370978 CGTAGGAGCACGATTGAAAACAT 59.629 43.478 0.00 0.00 44.69 2.71
737 774 5.041951 TGAAAACATAGGTCATTGCGAAC 57.958 39.130 0.00 0.00 0.00 3.95
836 873 3.556213 GGGAATTAAAGCGGCCTTTTGTT 60.556 43.478 0.00 1.97 41.37 2.83
837 874 4.062293 GGAATTAAAGCGGCCTTTTGTTT 58.938 39.130 0.00 0.46 41.37 2.83
903 940 1.154131 CACCTCTGCGTCTCGTCTG 60.154 63.158 0.00 0.00 0.00 3.51
921 958 1.384191 GTTCCCATTCTGCCCCTGT 59.616 57.895 0.00 0.00 0.00 4.00
1135 1172 0.375106 GCTCGAAGGCTTTCCAATCG 59.625 55.000 0.00 0.00 42.01 3.34
1180 1217 3.015293 CTTGATGTTGCGCGCTCGT 62.015 57.895 33.29 24.60 38.14 4.18
1204 1241 1.680860 CCCTGGTTTGGATCGGGTAAC 60.681 57.143 0.00 0.00 0.00 2.50
1239 1276 0.098728 CGGAAATGTTGCTTAGGGCG 59.901 55.000 0.00 0.00 45.43 6.13
1302 1339 4.340381 TGATTAACGGAGCTTAGTACCCTC 59.660 45.833 0.00 0.00 0.00 4.30
1581 1618 3.319972 ACCAGCATTGCATGATATGGAAC 59.680 43.478 16.60 0.00 43.41 3.62
1582 1619 3.561503 CAGCATTGCATGATATGGAACG 58.438 45.455 11.91 0.00 43.41 3.95
1583 1620 3.251487 CAGCATTGCATGATATGGAACGA 59.749 43.478 11.91 0.00 43.41 3.85
1584 1621 3.884693 AGCATTGCATGATATGGAACGAA 59.115 39.130 11.91 0.00 43.41 3.85
1729 1782 4.889832 ATTGTTGCTGCTATTAGTCTGC 57.110 40.909 0.00 8.80 0.00 4.26
1756 1809 7.886629 ATTTGCTGTACATCTTCCATATTGT 57.113 32.000 0.00 0.00 0.00 2.71
1764 1817 9.183368 TGTACATCTTCCATATTGTGCATTTTA 57.817 29.630 0.00 0.00 31.22 1.52
1823 1876 4.892934 AGCTCTACAAGGATTCTGTAGGAG 59.107 45.833 11.21 9.09 36.93 3.69
1843 1896 4.079253 GAGCCCAAAGTTCATGTAAGGAA 58.921 43.478 0.00 0.00 32.22 3.36
1859 1912 9.071276 CATGTAAGGAATACTGCCTGAATTATT 57.929 33.333 0.00 0.00 35.50 1.40
1867 1920 5.927281 ACTGCCTGAATTATTTTGAGCAT 57.073 34.783 0.00 0.00 0.00 3.79
1868 1921 5.657474 ACTGCCTGAATTATTTTGAGCATG 58.343 37.500 0.00 0.00 0.00 4.06
1869 1922 4.435425 TGCCTGAATTATTTTGAGCATGC 58.565 39.130 10.51 10.51 0.00 4.06
1898 1953 9.462606 TTCTTTCTATTCCCCTTGAAGATTTAC 57.537 33.333 0.00 0.00 36.14 2.01
1923 1978 3.144506 CACCTTGATTCTTCTGCTGTGT 58.855 45.455 0.00 0.00 0.00 3.72
1979 2034 9.158233 CTTCAAGCAATCCAAAAATCACATATT 57.842 29.630 0.00 0.00 0.00 1.28
2027 2082 5.350504 AATCATCAGTTCCAGATCTTCGT 57.649 39.130 0.00 0.00 0.00 3.85
2089 2144 2.229784 CAGTTCAGATCCCAAAACCTGC 59.770 50.000 0.00 0.00 0.00 4.85
2096 2151 0.112995 TCCCAAAACCTGCAGCTGAT 59.887 50.000 20.43 0.00 0.00 2.90
2100 2155 3.429822 CCCAAAACCTGCAGCTGATATTG 60.430 47.826 20.43 12.17 0.00 1.90
2105 2160 4.096190 ACCTGCAGCTGATATTGCTAAT 57.904 40.909 20.43 0.00 40.87 1.73
2128 2183 5.757850 AGTGCTAAACCTGTTCAAAAGAG 57.242 39.130 0.00 0.00 0.00 2.85
2210 2271 0.899720 CTGCACCAAAGCAATCCCAT 59.100 50.000 0.00 0.00 45.13 4.00
2230 2291 5.423886 CCATGAAAAGGTAGGAGAGTTCTC 58.576 45.833 0.00 0.39 42.14 2.87
2233 2294 4.528596 TGAAAAGGTAGGAGAGTTCTCTGG 59.471 45.833 7.09 0.00 42.48 3.86
2247 2308 7.967908 AGAGTTCTCTGGAATCTTCTTACAAA 58.032 34.615 1.23 0.00 33.71 2.83
2250 2311 7.875554 AGTTCTCTGGAATCTTCTTACAAACTC 59.124 37.037 0.00 0.00 33.71 3.01
2268 2329 8.885494 ACAAACTCTTATTCTGATGAGCTATC 57.115 34.615 0.00 0.00 36.29 2.08
2273 2334 8.649591 ACTCTTATTCTGATGAGCTATCACATT 58.350 33.333 0.00 0.00 40.82 2.71
2280 2341 7.532571 TCTGATGAGCTATCACATTTTGTTTG 58.467 34.615 0.00 0.00 40.82 2.93
2312 2373 6.588204 AGTCTAGTGGTTGTTGACATGTTAA 58.412 36.000 0.00 0.00 0.00 2.01
2313 2374 6.706270 AGTCTAGTGGTTGTTGACATGTTAAG 59.294 38.462 2.84 0.00 0.00 1.85
2315 2376 7.012044 GTCTAGTGGTTGTTGACATGTTAAGTT 59.988 37.037 2.84 0.00 0.00 2.66
2316 2377 6.131544 AGTGGTTGTTGACATGTTAAGTTC 57.868 37.500 2.84 0.00 0.00 3.01
2321 2382 7.554835 TGGTTGTTGACATGTTAAGTTCTACTT 59.445 33.333 2.84 0.00 41.97 2.24
2346 2407 4.152402 ACTTAGCGTTTAGTGCTGTGAATG 59.848 41.667 0.00 0.00 43.85 2.67
2350 2411 3.825308 CGTTTAGTGCTGTGAATGCAAT 58.175 40.909 0.00 0.00 42.41 3.56
2382 2445 7.501892 TGTTTCTGCCTGAACATATAATATGCA 59.498 33.333 0.00 0.00 33.88 3.96
2415 2479 7.678947 AATTTGAACTCTGATCCTTGTGTAG 57.321 36.000 0.00 0.00 0.00 2.74
2420 2484 7.997482 TGAACTCTGATCCTTGTGTAGTATAC 58.003 38.462 0.00 0.00 43.42 1.47
2463 2527 5.944007 TCCCTTACTTCTTTAGGATGTTTGC 59.056 40.000 0.00 0.00 34.71 3.68
2468 2532 5.140454 ACTTCTTTAGGATGTTTGCCTGTT 58.860 37.500 0.00 0.00 36.96 3.16
2470 2534 6.098266 ACTTCTTTAGGATGTTTGCCTGTTTT 59.902 34.615 0.00 0.00 36.96 2.43
2502 2566 7.440523 AAGTTTTGTCTGCCTAGTTTCATAG 57.559 36.000 0.00 0.00 0.00 2.23
2540 2783 6.109156 TCTTGTCTAGATGCTTGTTGGTTA 57.891 37.500 0.00 0.00 0.00 2.85
2542 2785 5.222079 TGTCTAGATGCTTGTTGGTTACA 57.778 39.130 0.00 0.00 34.12 2.41
2545 2788 5.874810 GTCTAGATGCTTGTTGGTTACATGA 59.125 40.000 0.00 0.00 36.44 3.07
2547 2790 4.910195 AGATGCTTGTTGGTTACATGAGA 58.090 39.130 0.00 0.00 36.44 3.27
2549 2792 4.350368 TGCTTGTTGGTTACATGAGAGA 57.650 40.909 0.00 0.00 36.44 3.10
2552 2795 5.769662 TGCTTGTTGGTTACATGAGAGATTT 59.230 36.000 0.00 0.00 36.44 2.17
2553 2796 6.072508 TGCTTGTTGGTTACATGAGAGATTTC 60.073 38.462 0.00 0.00 36.44 2.17
2554 2797 6.072508 GCTTGTTGGTTACATGAGAGATTTCA 60.073 38.462 0.00 0.00 36.44 2.69
2555 2798 7.362401 GCTTGTTGGTTACATGAGAGATTTCAT 60.362 37.037 0.00 0.00 38.30 2.57
2557 2800 9.513906 TTGTTGGTTACATGAGAGATTTCATAA 57.486 29.630 0.00 0.00 36.08 1.90
2587 2838 9.803315 GGTATTCTCAATTCTTTATTTGGAACC 57.197 33.333 0.00 0.00 0.00 3.62
2686 2937 6.433716 TGAAGAGGCATGTTTGATTTATGTGA 59.566 34.615 0.00 0.00 0.00 3.58
2790 3041 8.438373 ACATGAATGAGGAAGATATGAAGTCAT 58.562 33.333 0.00 0.00 40.22 3.06
2826 3077 6.470557 TGGTACTACACGAACTTAATTTGC 57.529 37.500 0.00 0.00 0.00 3.68
2828 3079 7.377398 TGGTACTACACGAACTTAATTTGCTA 58.623 34.615 0.00 0.00 0.00 3.49
2844 3095 4.398549 TTGCTACACTGTTTTATCGCAC 57.601 40.909 0.00 0.00 0.00 5.34
2848 3099 1.535462 ACACTGTTTTATCGCACAGCC 59.465 47.619 0.00 0.00 43.72 4.85
2858 3109 0.321671 TCGCACAGCCTTTAGAAGCT 59.678 50.000 0.00 0.00 40.89 3.74
2868 3120 4.895889 AGCCTTTAGAAGCTTGTTCCTTTT 59.104 37.500 2.10 0.00 35.22 2.27
2880 3132 5.454045 GCTTGTTCCTTTTCCCCAAAATGTA 60.454 40.000 0.00 0.00 30.91 2.29
2885 3137 8.714906 TGTTCCTTTTCCCCAAAATGTATTTAA 58.285 29.630 0.00 0.00 30.91 1.52
2922 3174 3.425162 AAGAAATCTTTCGCCCTGAGT 57.575 42.857 0.00 0.00 41.92 3.41
2974 3226 2.329267 TGCCGATCTATCCTGGATGTT 58.671 47.619 19.42 3.63 0.00 2.71
2982 3234 5.955961 TCTATCCTGGATGTTGATTGACA 57.044 39.130 19.42 0.00 0.00 3.58
2985 3237 7.674120 TCTATCCTGGATGTTGATTGACATAG 58.326 38.462 19.42 3.89 40.21 2.23
3008 3260 5.009210 AGCCGTCAAAGTAAAATTGTAGCAA 59.991 36.000 0.00 0.00 0.00 3.91
3024 3277 8.638685 ATTGTAGCAATTGAGTGATTTAATGC 57.361 30.769 10.34 0.00 0.00 3.56
3025 3278 7.155655 TGTAGCAATTGAGTGATTTAATGCA 57.844 32.000 10.34 0.00 0.00 3.96
3026 3279 7.028962 TGTAGCAATTGAGTGATTTAATGCAC 58.971 34.615 10.34 0.00 35.30 4.57
3027 3280 5.413499 AGCAATTGAGTGATTTAATGCACC 58.587 37.500 10.34 0.00 35.67 5.01
3028 3281 5.047164 AGCAATTGAGTGATTTAATGCACCA 60.047 36.000 10.34 1.83 35.67 4.17
3029 3282 5.290158 GCAATTGAGTGATTTAATGCACCAG 59.710 40.000 10.34 0.00 35.67 4.00
3030 3283 4.439305 TTGAGTGATTTAATGCACCAGC 57.561 40.909 0.00 0.00 42.57 4.85
3031 3284 2.754552 TGAGTGATTTAATGCACCAGCC 59.245 45.455 0.00 0.00 41.13 4.85
3032 3285 2.754552 GAGTGATTTAATGCACCAGCCA 59.245 45.455 0.00 0.00 41.13 4.75
3033 3286 3.368248 AGTGATTTAATGCACCAGCCAT 58.632 40.909 0.00 0.00 41.13 4.40
3034 3287 3.131577 AGTGATTTAATGCACCAGCCATG 59.868 43.478 0.00 0.00 41.13 3.66
3035 3288 2.159071 TGATTTAATGCACCAGCCATGC 60.159 45.455 0.00 0.00 43.68 4.06
3036 3289 0.536260 TTTAATGCACCAGCCATGCC 59.464 50.000 0.00 0.00 42.69 4.40
3037 3290 0.324552 TTAATGCACCAGCCATGCCT 60.325 50.000 0.00 0.00 42.69 4.75
3038 3291 0.324552 TAATGCACCAGCCATGCCTT 60.325 50.000 0.00 1.97 42.69 4.35
3039 3292 1.196104 AATGCACCAGCCATGCCTTT 61.196 50.000 0.00 0.00 42.69 3.11
3040 3293 1.610554 ATGCACCAGCCATGCCTTTC 61.611 55.000 0.00 0.00 42.69 2.62
3044 3297 1.345415 CACCAGCCATGCCTTTCTTTT 59.655 47.619 0.00 0.00 0.00 2.27
3082 3337 4.668941 CGCATGTGTTGTGTTACTATGGTG 60.669 45.833 0.00 0.00 0.00 4.17
3106 3361 6.808704 TGTGTCTCTCTATCTGATTTTTGTCG 59.191 38.462 0.00 0.00 0.00 4.35
3112 3367 6.368791 TCTCTATCTGATTTTTGTCGTGTTGG 59.631 38.462 0.00 0.00 0.00 3.77
3140 3395 6.121590 TGCATCCAATCAGCTCAGTTATTAA 58.878 36.000 0.00 0.00 0.00 1.40
3143 3398 7.594015 GCATCCAATCAGCTCAGTTATTAAATG 59.406 37.037 0.00 0.00 0.00 2.32
3168 3423 9.787435 TGTATATTAGCATAGGTTGGGTAAAAG 57.213 33.333 0.00 0.00 31.61 2.27
3176 3431 6.434965 GCATAGGTTGGGTAAAAGGAAGTAAA 59.565 38.462 0.00 0.00 0.00 2.01
3209 3547 9.819267 AAGTAATTAGTACCTCAAGCTACATTC 57.181 33.333 0.00 0.00 32.58 2.67
3274 3612 4.278419 GTCCACATAAAGGTTCAGCAAACT 59.722 41.667 2.53 0.00 38.02 2.66
3275 3613 4.278170 TCCACATAAAGGTTCAGCAAACTG 59.722 41.667 2.53 0.00 45.95 3.16
3276 3614 3.983344 CACATAAAGGTTCAGCAAACTGC 59.017 43.478 2.53 0.00 44.10 4.40
3277 3615 3.005791 ACATAAAGGTTCAGCAAACTGCC 59.994 43.478 0.00 0.00 46.52 4.85
3280 3618 1.708341 AGGTTCAGCAAACTGCCATT 58.292 45.000 0.00 0.00 46.52 3.16
3281 3619 2.875296 AGGTTCAGCAAACTGCCATTA 58.125 42.857 0.00 0.00 46.52 1.90
3283 3621 2.352715 GGTTCAGCAAACTGCCATTACC 60.353 50.000 0.00 0.00 46.52 2.85
3284 3622 2.284754 TCAGCAAACTGCCATTACCA 57.715 45.000 0.00 0.00 46.52 3.25
3285 3623 2.161855 TCAGCAAACTGCCATTACCAG 58.838 47.619 0.00 0.00 46.52 4.00
3286 3624 1.888512 CAGCAAACTGCCATTACCAGT 59.111 47.619 0.00 0.00 46.52 4.00
3287 3625 3.081061 CAGCAAACTGCCATTACCAGTA 58.919 45.455 0.00 0.00 46.52 2.74
3288 3626 3.696051 CAGCAAACTGCCATTACCAGTAT 59.304 43.478 0.00 0.00 46.52 2.12
3316 3654 9.567848 CAATACCATGTAACACATCTAAAAACC 57.432 33.333 0.00 0.00 36.53 3.27
3317 3655 8.871629 ATACCATGTAACACATCTAAAAACCA 57.128 30.769 0.00 0.00 36.53 3.67
3354 3698 6.990341 ATTGTTCAGCTTTCTTTTTGCTTT 57.010 29.167 0.00 0.00 34.51 3.51
3412 3756 5.030820 ACCTCTGCCTTTACCAGTATACTT 58.969 41.667 1.56 0.00 0.00 2.24
3413 3757 6.200114 ACCTCTGCCTTTACCAGTATACTTA 58.800 40.000 1.56 0.00 0.00 2.24
3414 3758 6.097981 ACCTCTGCCTTTACCAGTATACTTAC 59.902 42.308 1.56 0.00 0.00 2.34
3415 3759 6.324254 CCTCTGCCTTTACCAGTATACTTACT 59.676 42.308 1.56 0.00 39.30 2.24
3448 3793 8.797438 GGATTATATCTTTTCCCAAGATGTTCC 58.203 37.037 7.25 2.90 37.54 3.62
3556 3901 3.322254 CCTCAAGATCATTACCGCCTACT 59.678 47.826 0.00 0.00 0.00 2.57
3577 3922 3.008835 AGCTGAATGCATCTTAAGCCA 57.991 42.857 15.30 0.00 45.94 4.75
3617 3962 5.330455 TGTCATCCTGCTGAGTAACTTAG 57.670 43.478 0.00 0.00 0.00 2.18
3622 3967 0.535335 TGCTGAGTAACTTAGGGCGG 59.465 55.000 0.00 0.00 0.00 6.13
3678 4023 1.043116 AGAACTCCATGATCGCGGGA 61.043 55.000 6.13 4.03 0.00 5.14
3797 4142 2.357327 TTCCCGTGTACAACAGATCG 57.643 50.000 0.00 0.00 0.00 3.69
3899 4244 3.144506 GAGGATCTGGGTGTTGCATATG 58.855 50.000 0.00 0.00 0.00 1.78
4010 4359 6.015027 TCGTCTTTGGAACTTTGTTTTTCA 57.985 33.333 0.00 0.00 0.00 2.69
4362 4712 9.607988 ATGGTATATTCACAAAATCGTCACTAA 57.392 29.630 0.00 0.00 0.00 2.24
4554 4904 8.958506 AGTCTATAACAACCAACAGACTAGTAG 58.041 37.037 0.00 0.00 40.59 2.57
4560 4910 3.600388 ACCAACAGACTAGTAGCAATGC 58.400 45.455 0.00 0.00 0.00 3.56
4561 4911 3.007940 ACCAACAGACTAGTAGCAATGCA 59.992 43.478 8.35 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.984474 TCAAGATACATGAAACTATTCCGGAC 59.016 38.462 1.83 0.00 34.49 4.79
1 2 7.119709 TCAAGATACATGAAACTATTCCGGA 57.880 36.000 0.00 0.00 34.49 5.14
2 3 7.516785 CGTTCAAGATACATGAAACTATTCCGG 60.517 40.741 0.00 0.00 38.44 5.14
3 4 7.337718 CGTTCAAGATACATGAAACTATTCCG 58.662 38.462 0.00 0.00 38.44 4.30
4 5 7.254795 CCCGTTCAAGATACATGAAACTATTCC 60.255 40.741 0.00 0.00 38.44 3.01
27 28 1.145377 CCAATTACCCGAGTCCCCG 59.855 63.158 0.00 0.00 0.00 5.73
72 73 9.516314 GCAAAACACTAGAAACTTTCATTTACT 57.484 29.630 0.00 0.00 0.00 2.24
73 74 9.516314 AGCAAAACACTAGAAACTTTCATTTAC 57.484 29.630 0.00 0.00 0.00 2.01
74 75 9.730420 GAGCAAAACACTAGAAACTTTCATTTA 57.270 29.630 0.00 0.00 0.00 1.40
75 76 7.432252 CGAGCAAAACACTAGAAACTTTCATTT 59.568 33.333 0.00 0.00 0.00 2.32
76 77 6.912591 CGAGCAAAACACTAGAAACTTTCATT 59.087 34.615 0.00 0.00 0.00 2.57
77 78 6.430451 CGAGCAAAACACTAGAAACTTTCAT 58.570 36.000 0.00 0.00 0.00 2.57
78 79 5.729454 GCGAGCAAAACACTAGAAACTTTCA 60.729 40.000 0.00 0.00 0.00 2.69
79 80 4.671068 GCGAGCAAAACACTAGAAACTTTC 59.329 41.667 0.00 0.00 0.00 2.62
80 81 4.335594 AGCGAGCAAAACACTAGAAACTTT 59.664 37.500 0.00 0.00 0.00 2.66
81 82 3.877508 AGCGAGCAAAACACTAGAAACTT 59.122 39.130 0.00 0.00 0.00 2.66
82 83 3.467803 AGCGAGCAAAACACTAGAAACT 58.532 40.909 0.00 0.00 0.00 2.66
83 84 3.879932 AGCGAGCAAAACACTAGAAAC 57.120 42.857 0.00 0.00 0.00 2.78
84 85 4.893424 AAAGCGAGCAAAACACTAGAAA 57.107 36.364 0.00 0.00 0.00 2.52
85 86 6.554334 AATAAAGCGAGCAAAACACTAGAA 57.446 33.333 0.00 0.00 0.00 2.10
86 87 6.554334 AAATAAAGCGAGCAAAACACTAGA 57.446 33.333 0.00 0.00 0.00 2.43
87 88 7.623268 AAAAATAAAGCGAGCAAAACACTAG 57.377 32.000 0.00 0.00 0.00 2.57
88 89 8.561212 TCTAAAAATAAAGCGAGCAAAACACTA 58.439 29.630 0.00 0.00 0.00 2.74
89 90 7.422399 TCTAAAAATAAAGCGAGCAAAACACT 58.578 30.769 0.00 0.00 0.00 3.55
90 91 7.378728 ACTCTAAAAATAAAGCGAGCAAAACAC 59.621 33.333 0.00 0.00 0.00 3.32
91 92 7.422399 ACTCTAAAAATAAAGCGAGCAAAACA 58.578 30.769 0.00 0.00 0.00 2.83
92 93 7.853377 ACTCTAAAAATAAAGCGAGCAAAAC 57.147 32.000 0.00 0.00 0.00 2.43
93 94 8.865590 AAACTCTAAAAATAAAGCGAGCAAAA 57.134 26.923 0.00 0.00 0.00 2.44
94 95 8.865590 AAAACTCTAAAAATAAAGCGAGCAAA 57.134 26.923 0.00 0.00 0.00 3.68
95 96 8.865590 AAAAACTCTAAAAATAAAGCGAGCAA 57.134 26.923 0.00 0.00 0.00 3.91
119 120 5.837437 ACCGAATTATGTTCACAGCAAAAA 58.163 33.333 0.00 0.00 0.00 1.94
120 121 5.446143 ACCGAATTATGTTCACAGCAAAA 57.554 34.783 0.00 0.00 0.00 2.44
121 122 5.446143 AACCGAATTATGTTCACAGCAAA 57.554 34.783 0.00 0.00 0.00 3.68
122 123 5.446143 AAACCGAATTATGTTCACAGCAA 57.554 34.783 0.00 0.00 0.00 3.91
123 124 5.446143 AAAACCGAATTATGTTCACAGCA 57.554 34.783 0.00 0.00 0.00 4.41
124 125 5.506832 CGTAAAACCGAATTATGTTCACAGC 59.493 40.000 0.00 0.00 0.00 4.40
125 126 5.506832 GCGTAAAACCGAATTATGTTCACAG 59.493 40.000 0.00 0.00 0.00 3.66
126 127 5.049612 TGCGTAAAACCGAATTATGTTCACA 60.050 36.000 0.00 0.00 0.00 3.58
127 128 5.383958 TGCGTAAAACCGAATTATGTTCAC 58.616 37.500 0.00 0.00 0.00 3.18
128 129 5.608676 TGCGTAAAACCGAATTATGTTCA 57.391 34.783 0.00 0.00 0.00 3.18
129 130 6.743627 TGAATGCGTAAAACCGAATTATGTTC 59.256 34.615 0.00 0.00 36.23 3.18
130 131 6.613233 TGAATGCGTAAAACCGAATTATGTT 58.387 32.000 0.00 0.00 36.23 2.71
131 132 6.184580 TGAATGCGTAAAACCGAATTATGT 57.815 33.333 0.00 0.00 36.23 2.29
132 133 6.964370 TCTTGAATGCGTAAAACCGAATTATG 59.036 34.615 0.00 0.00 36.23 1.90
133 134 7.079182 TCTTGAATGCGTAAAACCGAATTAT 57.921 32.000 0.00 0.00 36.23 1.28
134 135 6.483385 TCTTGAATGCGTAAAACCGAATTA 57.517 33.333 0.00 0.00 36.23 1.40
135 136 5.365403 TCTTGAATGCGTAAAACCGAATT 57.635 34.783 0.00 0.00 38.78 2.17
136 137 5.365403 TTCTTGAATGCGTAAAACCGAAT 57.635 34.783 0.00 0.00 0.00 3.34
154 155 6.418101 TCTAATCCAACAGCTATGCTTTCTT 58.582 36.000 0.00 0.00 36.40 2.52
161 162 9.716531 TGATAGAATTCTAATCCAACAGCTATG 57.283 33.333 18.79 0.00 31.39 2.23
162 163 9.717942 GTGATAGAATTCTAATCCAACAGCTAT 57.282 33.333 18.79 0.00 31.39 2.97
163 164 8.704668 TGTGATAGAATTCTAATCCAACAGCTA 58.295 33.333 18.79 0.00 31.39 3.32
164 165 7.497249 GTGTGATAGAATTCTAATCCAACAGCT 59.503 37.037 18.79 0.00 31.39 4.24
165 166 7.517417 CGTGTGATAGAATTCTAATCCAACAGC 60.517 40.741 18.79 11.38 31.39 4.40
167 168 6.257849 GCGTGTGATAGAATTCTAATCCAACA 59.742 38.462 18.79 14.49 31.39 3.33
189 191 6.656945 CATAGTTAACTATCTGACTACGCGT 58.343 40.000 22.60 19.17 37.07 6.01
194 196 8.630917 GTGGAAGCATAGTTAACTATCTGACTA 58.369 37.037 22.60 14.81 37.07 2.59
201 203 9.515226 TTTTTGAGTGGAAGCATAGTTAACTAT 57.485 29.630 20.27 20.27 39.61 2.12
202 204 8.911918 TTTTTGAGTGGAAGCATAGTTAACTA 57.088 30.769 17.41 17.41 0.00 2.24
207 209 6.959639 TTCTTTTTGAGTGGAAGCATAGTT 57.040 33.333 0.00 0.00 0.00 2.24
208 210 6.959639 TTTCTTTTTGAGTGGAAGCATAGT 57.040 33.333 0.00 0.00 0.00 2.12
233 235 3.581755 TCGTAGCGCAGTCTATGTTTTT 58.418 40.909 11.47 0.00 0.00 1.94
234 236 3.119602 TCTCGTAGCGCAGTCTATGTTTT 60.120 43.478 11.47 0.00 0.00 2.43
235 237 2.422479 TCTCGTAGCGCAGTCTATGTTT 59.578 45.455 11.47 0.00 0.00 2.83
236 238 2.014857 TCTCGTAGCGCAGTCTATGTT 58.985 47.619 11.47 0.00 0.00 2.71
237 239 1.664873 TCTCGTAGCGCAGTCTATGT 58.335 50.000 11.47 0.00 0.00 2.29
238 240 2.757686 TTCTCGTAGCGCAGTCTATG 57.242 50.000 11.47 0.00 0.00 2.23
239 241 2.422479 TGTTTCTCGTAGCGCAGTCTAT 59.578 45.455 11.47 0.00 0.00 1.98
240 242 1.808343 TGTTTCTCGTAGCGCAGTCTA 59.192 47.619 11.47 0.00 0.00 2.59
241 243 0.596577 TGTTTCTCGTAGCGCAGTCT 59.403 50.000 11.47 0.00 0.00 3.24
242 244 0.985549 CTGTTTCTCGTAGCGCAGTC 59.014 55.000 11.47 0.00 0.00 3.51
243 245 0.596577 TCTGTTTCTCGTAGCGCAGT 59.403 50.000 11.47 0.00 0.00 4.40
244 246 1.135660 TCTCTGTTTCTCGTAGCGCAG 60.136 52.381 11.47 0.00 0.00 5.18
245 247 0.879090 TCTCTGTTTCTCGTAGCGCA 59.121 50.000 11.47 0.00 0.00 6.09
246 248 1.849219 CATCTCTGTTTCTCGTAGCGC 59.151 52.381 0.00 0.00 0.00 5.92
247 249 2.848887 CACATCTCTGTTTCTCGTAGCG 59.151 50.000 0.00 0.00 31.62 4.26
248 250 2.600867 GCACATCTCTGTTTCTCGTAGC 59.399 50.000 0.00 0.00 31.62 3.58
249 251 4.103365 AGCACATCTCTGTTTCTCGTAG 57.897 45.455 0.00 0.00 31.62 3.51
250 252 4.521130 AAGCACATCTCTGTTTCTCGTA 57.479 40.909 0.00 0.00 31.62 3.43
251 253 3.393089 AAGCACATCTCTGTTTCTCGT 57.607 42.857 0.00 0.00 31.62 4.18
252 254 3.181536 CGAAAGCACATCTCTGTTTCTCG 60.182 47.826 0.00 0.00 31.62 4.04
253 255 4.319235 CGAAAGCACATCTCTGTTTCTC 57.681 45.455 0.00 0.00 31.62 2.87
269 271 5.496387 CACATGCTCTACTTATTGCGAAAG 58.504 41.667 0.00 0.00 0.00 2.62
270 272 4.201812 GCACATGCTCTACTTATTGCGAAA 60.202 41.667 0.00 0.00 38.21 3.46
271 273 3.309682 GCACATGCTCTACTTATTGCGAA 59.690 43.478 0.00 0.00 38.21 4.70
272 274 2.866156 GCACATGCTCTACTTATTGCGA 59.134 45.455 0.00 0.00 38.21 5.10
273 275 3.244670 GCACATGCTCTACTTATTGCG 57.755 47.619 0.00 0.00 38.21 4.85
286 288 1.888512 TCTTTTCAGGGAAGCACATGC 59.111 47.619 0.00 0.00 42.49 4.06
287 289 4.589216 TTTCTTTTCAGGGAAGCACATG 57.411 40.909 0.00 0.00 0.00 3.21
288 290 4.039609 CCTTTTCTTTTCAGGGAAGCACAT 59.960 41.667 0.00 0.00 0.00 3.21
289 291 3.384467 CCTTTTCTTTTCAGGGAAGCACA 59.616 43.478 0.00 0.00 0.00 4.57
290 292 3.636764 TCCTTTTCTTTTCAGGGAAGCAC 59.363 43.478 0.00 0.00 0.00 4.40
291 293 3.909732 TCCTTTTCTTTTCAGGGAAGCA 58.090 40.909 0.00 0.00 0.00 3.91
292 294 4.937201 TTCCTTTTCTTTTCAGGGAAGC 57.063 40.909 0.00 0.00 0.00 3.86
334 336 4.596585 GTGTGTGGGTGGGTGGGG 62.597 72.222 0.00 0.00 0.00 4.96
335 337 2.863019 TTTGTGTGTGGGTGGGTGGG 62.863 60.000 0.00 0.00 0.00 4.61
336 338 1.380515 TTTGTGTGTGGGTGGGTGG 60.381 57.895 0.00 0.00 0.00 4.61
337 339 0.395036 TCTTTGTGTGTGGGTGGGTG 60.395 55.000 0.00 0.00 0.00 4.61
338 340 0.333312 TTCTTTGTGTGTGGGTGGGT 59.667 50.000 0.00 0.00 0.00 4.51
339 341 1.479709 TTTCTTTGTGTGTGGGTGGG 58.520 50.000 0.00 0.00 0.00 4.61
340 342 2.757868 TCTTTTCTTTGTGTGTGGGTGG 59.242 45.455 0.00 0.00 0.00 4.61
341 343 4.097741 TCATCTTTTCTTTGTGTGTGGGTG 59.902 41.667 0.00 0.00 0.00 4.61
342 344 4.277476 TCATCTTTTCTTTGTGTGTGGGT 58.723 39.130 0.00 0.00 0.00 4.51
343 345 4.916983 TCATCTTTTCTTTGTGTGTGGG 57.083 40.909 0.00 0.00 0.00 4.61
344 346 6.035975 GGTTTTCATCTTTTCTTTGTGTGTGG 59.964 38.462 0.00 0.00 0.00 4.17
345 347 6.237542 CGGTTTTCATCTTTTCTTTGTGTGTG 60.238 38.462 0.00 0.00 0.00 3.82
346 348 5.804979 CGGTTTTCATCTTTTCTTTGTGTGT 59.195 36.000 0.00 0.00 0.00 3.72
347 349 5.276348 GCGGTTTTCATCTTTTCTTTGTGTG 60.276 40.000 0.00 0.00 0.00 3.82
348 350 4.803613 GCGGTTTTCATCTTTTCTTTGTGT 59.196 37.500 0.00 0.00 0.00 3.72
349 351 4.803088 TGCGGTTTTCATCTTTTCTTTGTG 59.197 37.500 0.00 0.00 0.00 3.33
350 352 5.004922 TGCGGTTTTCATCTTTTCTTTGT 57.995 34.783 0.00 0.00 0.00 2.83
351 353 5.276820 GGTTGCGGTTTTCATCTTTTCTTTG 60.277 40.000 0.00 0.00 0.00 2.77
352 354 4.808895 GGTTGCGGTTTTCATCTTTTCTTT 59.191 37.500 0.00 0.00 0.00 2.52
353 355 4.368315 GGTTGCGGTTTTCATCTTTTCTT 58.632 39.130 0.00 0.00 0.00 2.52
354 356 3.550030 CGGTTGCGGTTTTCATCTTTTCT 60.550 43.478 0.00 0.00 0.00 2.52
355 357 2.724174 CGGTTGCGGTTTTCATCTTTTC 59.276 45.455 0.00 0.00 0.00 2.29
356 358 2.100087 ACGGTTGCGGTTTTCATCTTTT 59.900 40.909 0.00 0.00 0.00 2.27
357 359 1.679153 ACGGTTGCGGTTTTCATCTTT 59.321 42.857 0.00 0.00 0.00 2.52
358 360 1.001815 CACGGTTGCGGTTTTCATCTT 60.002 47.619 0.00 0.00 0.00 2.40
359 361 0.591170 CACGGTTGCGGTTTTCATCT 59.409 50.000 0.00 0.00 0.00 2.90
360 362 1.001745 GCACGGTTGCGGTTTTCATC 61.002 55.000 0.00 0.00 39.50 2.92
361 363 1.007849 GCACGGTTGCGGTTTTCAT 60.008 52.632 0.00 0.00 39.50 2.57
362 364 2.409651 GCACGGTTGCGGTTTTCA 59.590 55.556 0.00 0.00 39.50 2.69
371 373 2.281761 AGCCCAGAAGCACGGTTG 60.282 61.111 0.00 0.00 34.23 3.77
372 374 2.032681 GAGCCCAGAAGCACGGTT 59.967 61.111 0.00 0.00 34.23 4.44
373 375 4.021925 GGAGCCCAGAAGCACGGT 62.022 66.667 0.00 0.00 34.23 4.83
468 470 9.620259 ACCAAAAAGTAAATAAAAATTGCAGGA 57.380 25.926 0.00 0.00 0.00 3.86
502 504 9.893305 CTCATTTTAATAGGTTTCAACGAACTT 57.107 29.630 0.00 0.00 0.00 2.66
503 505 9.280174 TCTCATTTTAATAGGTTTCAACGAACT 57.720 29.630 0.00 0.00 0.00 3.01
506 508 9.667107 AGATCTCATTTTAATAGGTTTCAACGA 57.333 29.630 0.00 0.00 0.00 3.85
573 575 2.932855 TGTGTCCAAATACCGAACCA 57.067 45.000 0.00 0.00 0.00 3.67
646 656 4.096532 CACTCTACACCTTCTCGCAATCTA 59.903 45.833 0.00 0.00 0.00 1.98
723 760 1.003118 AGCAAGGTTCGCAATGACCTA 59.997 47.619 0.00 0.00 30.78 3.08
737 774 0.179020 TCGGCCCAATATGAGCAAGG 60.179 55.000 0.00 0.00 0.00 3.61
836 873 4.638421 CACCAGTATAATTGCCTCGGAAAA 59.362 41.667 0.00 0.00 0.00 2.29
837 874 4.196193 CACCAGTATAATTGCCTCGGAAA 58.804 43.478 0.00 0.00 0.00 3.13
863 900 4.202419 TGTCCTCCGGAAATTTTCTCAGAA 60.202 41.667 5.23 0.00 31.38 3.02
864 901 3.326588 TGTCCTCCGGAAATTTTCTCAGA 59.673 43.478 5.23 3.41 31.38 3.27
891 928 2.197605 TGGGAACAGACGAGACGCA 61.198 57.895 0.00 0.00 35.01 5.24
903 940 0.681243 GACAGGGGCAGAATGGGAAC 60.681 60.000 0.00 0.00 35.86 3.62
1180 1217 1.493022 CCCGATCCAAACCAGGGATTA 59.507 52.381 0.00 0.00 45.05 1.75
1239 1276 0.391263 ACGAACTCCCCGATTTCAGC 60.391 55.000 0.00 0.00 0.00 4.26
1520 1557 1.901833 ACCCTGCCCAATTGCTTTAAG 59.098 47.619 0.00 0.00 0.00 1.85
1581 1618 3.250762 ACCATCAGTGACAACATTGTTCG 59.749 43.478 0.00 0.00 42.43 3.95
1582 1619 4.836125 ACCATCAGTGACAACATTGTTC 57.164 40.909 0.00 0.00 42.43 3.18
1729 1782 9.888878 CAATATGGAAGATGTACAGCAAATAAG 57.111 33.333 14.51 0.45 0.00 1.73
1756 1809 1.957177 TGGCGAAACCTGTAAAATGCA 59.043 42.857 0.00 0.00 40.22 3.96
1764 1817 1.608590 CATCAACTTGGCGAAACCTGT 59.391 47.619 0.00 0.00 40.22 4.00
1823 1876 5.652452 AGTATTCCTTACATGAACTTTGGGC 59.348 40.000 0.00 0.00 32.87 5.36
1843 1896 7.431249 CATGCTCAAAATAATTCAGGCAGTAT 58.569 34.615 0.00 0.00 32.04 2.12
1859 1912 2.880443 AGAAAGAAGGGCATGCTCAAA 58.120 42.857 22.09 0.00 0.00 2.69
1867 1920 2.573463 AGGGGAATAGAAAGAAGGGCA 58.427 47.619 0.00 0.00 0.00 5.36
1868 1921 3.053619 TCAAGGGGAATAGAAAGAAGGGC 60.054 47.826 0.00 0.00 0.00 5.19
1869 1922 4.862641 TCAAGGGGAATAGAAAGAAGGG 57.137 45.455 0.00 0.00 0.00 3.95
1898 1953 1.734465 GCAGAAGAATCAAGGTGACGG 59.266 52.381 0.00 0.00 0.00 4.79
1923 1978 2.178912 GCAGGTACAGCTTAACCACA 57.821 50.000 15.07 0.00 38.05 4.17
1979 2034 2.553602 CACATCCACAGTGCTTTGCTTA 59.446 45.455 0.00 0.00 0.00 3.09
1981 2036 0.956633 CACATCCACAGTGCTTTGCT 59.043 50.000 0.00 0.00 0.00 3.91
2089 2144 7.895975 TTAGCACTATTAGCAATATCAGCTG 57.104 36.000 7.63 7.63 43.33 4.24
2096 2151 8.044309 TGAACAGGTTTAGCACTATTAGCAATA 58.956 33.333 0.00 0.00 0.00 1.90
2100 2155 6.737254 TTGAACAGGTTTAGCACTATTAGC 57.263 37.500 0.00 0.00 0.00 3.09
2105 2160 6.482308 GTCTCTTTTGAACAGGTTTAGCACTA 59.518 38.462 0.00 0.00 0.00 2.74
2128 2183 1.818785 GCAGCAGCAGGGATCTGTC 60.819 63.158 0.00 0.00 42.78 3.51
2195 2256 3.008266 CCTTTTCATGGGATTGCTTTGGT 59.992 43.478 0.00 0.00 0.00 3.67
2210 2271 4.528596 CCAGAGAACTCTCCTACCTTTTCA 59.471 45.833 3.04 0.00 43.88 2.69
2247 2308 7.594351 TGTGATAGCTCATCAGAATAAGAGT 57.406 36.000 0.00 0.00 44.42 3.24
2250 2311 9.880064 CAAAATGTGATAGCTCATCAGAATAAG 57.120 33.333 0.00 0.00 44.42 1.73
2268 2329 9.438291 CTAGACTAGAACAACAAACAAAATGTG 57.562 33.333 3.13 0.00 0.00 3.21
2273 2334 7.107542 ACCACTAGACTAGAACAACAAACAAA 58.892 34.615 16.55 0.00 0.00 2.83
2280 2341 6.200475 GTCAACAACCACTAGACTAGAACAAC 59.800 42.308 16.55 0.00 0.00 3.32
2312 2373 7.328005 GCACTAAACGCTAAGTAAAGTAGAACT 59.672 37.037 0.00 0.00 0.00 3.01
2313 2374 7.328005 AGCACTAAACGCTAAGTAAAGTAGAAC 59.672 37.037 0.00 0.00 38.15 3.01
2315 2376 6.805271 CAGCACTAAACGCTAAGTAAAGTAGA 59.195 38.462 0.00 0.00 37.72 2.59
2316 2377 6.585322 ACAGCACTAAACGCTAAGTAAAGTAG 59.415 38.462 0.00 0.00 37.72 2.57
2321 2382 4.873817 TCACAGCACTAAACGCTAAGTAA 58.126 39.130 0.00 0.00 37.72 2.24
2324 2385 4.641954 CATTCACAGCACTAAACGCTAAG 58.358 43.478 0.00 0.00 37.72 2.18
2346 2407 2.997986 CAGGCAGAAACAATTCCATTGC 59.002 45.455 0.00 0.00 43.98 3.56
2350 2411 3.295093 TGTTCAGGCAGAAACAATTCCA 58.705 40.909 0.00 0.00 38.13 3.53
2382 2445 7.725844 AGGATCAGAGTTCAAATTAAAGGTTGT 59.274 33.333 0.00 0.00 0.00 3.32
2393 2456 6.174720 ACTACACAAGGATCAGAGTTCAAA 57.825 37.500 0.00 0.00 0.00 2.69
2443 2507 6.303839 ACAGGCAAACATCCTAAAGAAGTAA 58.696 36.000 0.00 0.00 31.52 2.24
2453 2517 3.259123 GGATCAAAACAGGCAAACATCCT 59.741 43.478 0.00 0.00 0.00 3.24
2456 2520 4.686191 TTGGATCAAAACAGGCAAACAT 57.314 36.364 0.00 0.00 0.00 2.71
2463 2527 6.818142 AGACAAAACTTTTGGATCAAAACAGG 59.182 34.615 16.79 0.00 38.24 4.00
2468 2532 5.104982 AGGCAGACAAAACTTTTGGATCAAA 60.105 36.000 16.79 0.00 0.00 2.69
2470 2534 3.960102 AGGCAGACAAAACTTTTGGATCA 59.040 39.130 16.79 0.00 0.00 2.92
2502 2566 7.313646 TCTAGACAAGAATAACTGTACAGTGC 58.686 38.462 28.55 17.41 41.58 4.40
2561 2804 9.803315 GGTTCCAAATAAAGAATTGAGAATACC 57.197 33.333 0.00 0.00 0.00 2.73
2564 2807 8.037166 GCAGGTTCCAAATAAAGAATTGAGAAT 58.963 33.333 0.00 0.00 0.00 2.40
2566 2809 6.493115 TGCAGGTTCCAAATAAAGAATTGAGA 59.507 34.615 0.00 0.00 0.00 3.27
2567 2810 6.690530 TGCAGGTTCCAAATAAAGAATTGAG 58.309 36.000 0.00 0.00 0.00 3.02
2569 2812 5.870978 CCTGCAGGTTCCAAATAAAGAATTG 59.129 40.000 25.53 0.00 0.00 2.32
2570 2813 5.569428 GCCTGCAGGTTCCAAATAAAGAATT 60.569 40.000 32.81 0.00 37.57 2.17
2571 2814 4.081476 GCCTGCAGGTTCCAAATAAAGAAT 60.081 41.667 32.81 0.00 37.57 2.40
2574 2825 2.827921 AGCCTGCAGGTTCCAAATAAAG 59.172 45.455 32.81 3.98 37.57 1.85
2646 2897 4.202090 GCCTCTTCAGCCTGGAAATTAATG 60.202 45.833 0.00 0.00 0.00 1.90
2649 2900 2.308570 TGCCTCTTCAGCCTGGAAATTA 59.691 45.455 0.00 0.00 0.00 1.40
2686 2937 4.099881 AGCACATCCACAGTTTGAAATTGT 59.900 37.500 0.00 0.00 0.00 2.71
2698 2949 4.905429 ACAAATGTAGTAGCACATCCACA 58.095 39.130 0.00 0.00 38.19 4.17
2790 3041 6.154877 TCGTGTAGTACCATTGGAATTCCTAA 59.845 38.462 24.73 16.84 36.82 2.69
2826 3077 3.181520 GGCTGTGCGATAAAACAGTGTAG 60.182 47.826 0.00 0.00 44.59 2.74
2828 3079 1.535462 GGCTGTGCGATAAAACAGTGT 59.465 47.619 4.87 0.00 44.59 3.55
2840 3091 1.135859 CAAGCTTCTAAAGGCTGTGCG 60.136 52.381 0.00 0.00 38.91 5.34
2844 3095 3.416156 AGGAACAAGCTTCTAAAGGCTG 58.584 45.455 0.00 0.00 38.91 4.85
2848 3099 5.279006 GGGGAAAAGGAACAAGCTTCTAAAG 60.279 44.000 0.00 0.00 0.00 1.85
2858 3109 6.755542 ATACATTTTGGGGAAAAGGAACAA 57.244 33.333 0.00 0.00 0.00 2.83
2914 3166 6.535508 CAGTTTAGTCTTACATTACTCAGGGC 59.464 42.308 0.00 0.00 0.00 5.19
2957 3209 5.636965 GTCAATCAACATCCAGGATAGATCG 59.363 44.000 0.00 0.00 0.00 3.69
2982 3234 6.373216 TGCTACAATTTTACTTTGACGGCTAT 59.627 34.615 0.00 0.00 0.00 2.97
2985 3237 4.789784 TGCTACAATTTTACTTTGACGGC 58.210 39.130 0.00 0.00 0.00 5.68
3008 3260 4.142093 GGCTGGTGCATTAAATCACTCAAT 60.142 41.667 0.00 0.00 41.91 2.57
3023 3276 1.538687 AAGAAAGGCATGGCTGGTGC 61.539 55.000 24.08 6.70 41.78 5.01
3024 3277 0.971386 AAAGAAAGGCATGGCTGGTG 59.029 50.000 24.08 0.00 0.00 4.17
3025 3278 1.345415 CAAAAGAAAGGCATGGCTGGT 59.655 47.619 24.08 14.08 0.00 4.00
3026 3279 1.942586 GCAAAAGAAAGGCATGGCTGG 60.943 52.381 24.08 7.70 0.00 4.85
3027 3280 1.001633 AGCAAAAGAAAGGCATGGCTG 59.998 47.619 24.08 10.27 0.00 4.85
3028 3281 1.345063 AGCAAAAGAAAGGCATGGCT 58.655 45.000 17.44 17.44 0.00 4.75
3029 3282 2.174363 AAGCAAAAGAAAGGCATGGC 57.826 45.000 12.14 12.14 0.00 4.40
3030 3283 3.304190 GCAAAAGCAAAAGAAAGGCATGG 60.304 43.478 0.00 0.00 0.00 3.66
3031 3284 3.562557 AGCAAAAGCAAAAGAAAGGCATG 59.437 39.130 0.00 0.00 0.00 4.06
3032 3285 3.812262 AGCAAAAGCAAAAGAAAGGCAT 58.188 36.364 0.00 0.00 0.00 4.40
3033 3286 3.264998 AGCAAAAGCAAAAGAAAGGCA 57.735 38.095 0.00 0.00 0.00 4.75
3034 3287 3.242837 CCAAGCAAAAGCAAAAGAAAGGC 60.243 43.478 0.00 0.00 0.00 4.35
3035 3288 3.242837 GCCAAGCAAAAGCAAAAGAAAGG 60.243 43.478 0.00 0.00 0.00 3.11
3036 3289 3.544637 CGCCAAGCAAAAGCAAAAGAAAG 60.545 43.478 0.00 0.00 0.00 2.62
3037 3290 2.351111 CGCCAAGCAAAAGCAAAAGAAA 59.649 40.909 0.00 0.00 0.00 2.52
3038 3291 1.932511 CGCCAAGCAAAAGCAAAAGAA 59.067 42.857 0.00 0.00 0.00 2.52
3039 3292 1.569708 CGCCAAGCAAAAGCAAAAGA 58.430 45.000 0.00 0.00 0.00 2.52
3059 3312 3.435327 ACCATAGTAACACAACACATGCG 59.565 43.478 0.00 0.00 0.00 4.73
3060 3313 4.215399 ACACCATAGTAACACAACACATGC 59.785 41.667 0.00 0.00 0.00 4.06
3061 3314 5.238432 ACACACCATAGTAACACAACACATG 59.762 40.000 0.00 0.00 0.00 3.21
3062 3315 5.373222 ACACACCATAGTAACACAACACAT 58.627 37.500 0.00 0.00 0.00 3.21
3082 3337 6.809196 ACGACAAAAATCAGATAGAGAGACAC 59.191 38.462 0.00 0.00 0.00 3.67
3106 3361 2.036992 TGATTGGATGCAAACCCAACAC 59.963 45.455 17.27 14.78 44.29 3.32
3112 3367 1.820519 TGAGCTGATTGGATGCAAACC 59.179 47.619 2.94 6.38 0.00 3.27
3143 3398 9.227777 CCTTTTACCCAACCTATGCTAATATAC 57.772 37.037 0.00 0.00 0.00 1.47
3155 3410 5.831525 CAGTTTACTTCCTTTTACCCAACCT 59.168 40.000 0.00 0.00 0.00 3.50
3176 3431 8.039538 GCTTGAGGTACTAATTACTTAACCAGT 58.960 37.037 0.00 0.00 41.55 4.00
3220 3558 6.293407 GCCGCTTTGTAATATGCTAAATCTGA 60.293 38.462 0.00 0.00 0.00 3.27
3243 3581 2.290323 ACCTTTATGTGGACAGTGAGCC 60.290 50.000 0.00 0.00 0.00 4.70
3274 3612 4.141287 GGTATTGCATACTGGTAATGGCA 58.859 43.478 0.00 0.00 36.04 4.92
3275 3613 4.141287 TGGTATTGCATACTGGTAATGGC 58.859 43.478 0.00 0.00 36.04 4.40
3276 3614 5.769662 ACATGGTATTGCATACTGGTAATGG 59.230 40.000 0.00 0.00 36.04 3.16
3277 3615 6.882610 ACATGGTATTGCATACTGGTAATG 57.117 37.500 0.00 0.00 36.04 1.90
3280 3618 6.764085 GTGTTACATGGTATTGCATACTGGTA 59.236 38.462 0.00 0.00 36.04 3.25
3281 3619 5.588648 GTGTTACATGGTATTGCATACTGGT 59.411 40.000 0.00 0.00 36.04 4.00
3283 3621 6.676237 TGTGTTACATGGTATTGCATACTG 57.324 37.500 0.00 0.00 36.04 2.74
3284 3622 7.282585 AGATGTGTTACATGGTATTGCATACT 58.717 34.615 0.00 0.00 39.27 2.12
3285 3623 7.496529 AGATGTGTTACATGGTATTGCATAC 57.503 36.000 0.00 0.00 39.27 2.39
3286 3624 9.620259 TTTAGATGTGTTACATGGTATTGCATA 57.380 29.630 0.00 0.00 39.27 3.14
3287 3625 8.518430 TTTAGATGTGTTACATGGTATTGCAT 57.482 30.769 0.00 0.00 39.27 3.96
3288 3626 7.929941 TTTAGATGTGTTACATGGTATTGCA 57.070 32.000 0.00 0.00 39.27 4.08
3316 3654 9.590451 AAGCTGAACAATAATAAATGGATTGTG 57.410 29.630 0.58 0.00 41.71 3.33
3345 3689 3.936564 ACAAGCAGACCAAAAGCAAAAA 58.063 36.364 0.00 0.00 0.00 1.94
3354 3698 5.752955 GCAAAAATCTTTACAAGCAGACCAA 59.247 36.000 0.00 0.00 0.00 3.67
3372 3716 5.508994 GCAGAGGTTAAGCTTTAGGCAAAAA 60.509 40.000 3.20 0.00 44.79 1.94
3379 3723 5.354513 GGTAAAGGCAGAGGTTAAGCTTTAG 59.645 44.000 3.20 3.39 0.00 1.85
3470 3815 0.886490 GGGCCCTGTGAGCATAATCG 60.886 60.000 17.04 0.00 0.00 3.34
3480 3825 2.527951 CTTCTTCCGAGGGCCCTGTG 62.528 65.000 34.59 21.92 0.00 3.66
3556 3901 4.155063 TGGCTTAAGATGCATTCAGCTA 57.845 40.909 6.67 1.50 45.94 3.32
3577 3922 5.717078 TGACAAGTCGTCTAACTAACCAT 57.283 39.130 0.00 0.00 45.60 3.55
3602 3947 1.471676 CCGCCCTAAGTTACTCAGCAG 60.472 57.143 0.00 0.00 0.00 4.24
3605 3950 0.179081 GCCCGCCCTAAGTTACTCAG 60.179 60.000 0.00 0.00 0.00 3.35
3606 3951 1.619807 GGCCCGCCCTAAGTTACTCA 61.620 60.000 0.00 0.00 0.00 3.41
3617 3962 3.168528 TAGGAATCTGGCCCGCCC 61.169 66.667 0.00 0.00 34.56 6.13
3622 3967 2.104669 AGGTAGGTAGGAATCTGGCC 57.895 55.000 0.00 0.00 0.00 5.36
3673 4018 0.100503 GCATTACAACACCATCCCGC 59.899 55.000 0.00 0.00 0.00 6.13
3678 4023 8.458843 GTTAGTTATCTTGCATTACAACACCAT 58.541 33.333 0.00 0.00 33.68 3.55
3776 4121 3.056393 TCGATCTGTTGTACACGGGAAAT 60.056 43.478 0.00 0.00 31.75 2.17
3789 4134 2.550830 AGGCAACAACTCGATCTGTT 57.449 45.000 6.47 6.47 36.19 3.16
3790 4135 3.895232 ATAGGCAACAACTCGATCTGT 57.105 42.857 0.00 0.00 41.41 3.41
3797 4142 9.819267 AAGACTAATAGTAATAGGCAACAACTC 57.181 33.333 0.90 0.00 41.41 3.01
3826 4171 2.429610 GTTCATCGCCCTAACTCCACTA 59.570 50.000 0.00 0.00 0.00 2.74
4010 4359 8.303876 AGCATAAACCGACATGTTAAAAGAAAT 58.696 29.630 0.00 0.00 0.00 2.17
4229 4579 6.867662 ACTATTGTTCTTCCAGTCAAAGTG 57.132 37.500 0.00 0.00 0.00 3.16
4305 4655 8.407832 CAATCAGCAACAAAATCATGTAGGATA 58.592 33.333 0.00 0.00 32.02 2.59
4306 4656 7.093640 ACAATCAGCAACAAAATCATGTAGGAT 60.094 33.333 0.00 0.00 32.02 3.24
4362 4712 7.068103 TCCCGCAACAATACAATGAGAATTATT 59.932 33.333 0.00 0.00 0.00 1.40
4374 4724 5.590663 TGCTATAAATTCCCGCAACAATACA 59.409 36.000 0.00 0.00 0.00 2.29
4377 4727 5.590530 TTGCTATAAATTCCCGCAACAAT 57.409 34.783 0.00 0.00 35.86 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.