Multiple sequence alignment - TraesCS7B01G154000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G154000 chr7B 100.000 3492 0 0 1 3492 204898835 204895344 0.000000e+00 6449
1 TraesCS7B01G154000 chr7B 82.286 175 12 8 55 224 721812313 721812153 2.190000e-27 134
2 TraesCS7B01G154000 chr7B 80.473 169 9 16 51 214 721812139 721811990 1.330000e-19 108
3 TraesCS7B01G154000 chr7D 93.996 1449 57 16 597 2027 233651255 233649819 0.000000e+00 2167
4 TraesCS7B01G154000 chr7D 92.246 1496 80 19 2026 3492 233649705 233648217 0.000000e+00 2087
5 TraesCS7B01G154000 chr7D 90.129 233 19 4 328 557 282878384 282878153 2.040000e-77 300
6 TraesCS7B01G154000 chr7D 89.362 235 20 5 327 557 268193222 268193455 1.230000e-74 291
7 TraesCS7B01G154000 chr7A 93.933 1434 73 7 1644 3068 245470834 245472262 0.000000e+00 2154
8 TraesCS7B01G154000 chr7A 93.284 1072 53 10 604 1664 245469743 245470806 0.000000e+00 1563
9 TraesCS7B01G154000 chr7A 93.838 357 13 6 3138 3492 245472259 245472608 2.390000e-146 529
10 TraesCS7B01G154000 chr4B 89.496 238 20 5 324 557 545236564 545236800 2.640000e-76 296
11 TraesCS7B01G154000 chr4B 85.401 274 29 8 327 596 17483935 17484201 1.230000e-69 274
12 TraesCS7B01G154000 chr6B 89.316 234 20 5 328 557 403396763 403396531 4.410000e-74 289
13 TraesCS7B01G154000 chr2A 89.316 234 20 5 328 557 39930532 39930300 4.410000e-74 289
14 TraesCS7B01G154000 chr2A 78.799 283 41 9 51 326 11794054 11793784 4.630000e-39 172
15 TraesCS7B01G154000 chr5A 88.936 235 22 4 327 557 559826005 559826239 1.590000e-73 287
16 TraesCS7B01G154000 chr1B 86.466 266 27 8 300 557 411436379 411436643 2.050000e-72 283
17 TraesCS7B01G154000 chrUn 84.643 280 29 12 327 595 83678902 83678626 2.070000e-67 267
18 TraesCS7B01G154000 chr5B 82.390 318 45 10 2 313 689877500 689877188 2.070000e-67 267
19 TraesCS7B01G154000 chr3B 81.004 279 35 13 53 326 43596796 43597061 4.570000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G154000 chr7B 204895344 204898835 3491 True 6449.000000 6449 100.000 1 3492 1 chr7B.!!$R1 3491
1 TraesCS7B01G154000 chr7D 233648217 233651255 3038 True 2127.000000 2167 93.121 597 3492 2 chr7D.!!$R2 2895
2 TraesCS7B01G154000 chr7A 245469743 245472608 2865 False 1415.333333 2154 93.685 604 3492 3 chr7A.!!$F1 2888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 689 0.037734 AAGGAAGCGGGAAACGGAAT 59.962 50.0 0.0 0.0 44.51 3.01 F
1315 1329 0.394192 TGGAGGCGGATGATGATCAC 59.606 55.0 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 2452 0.038021 TGGAGCAGCATTGGCACTTA 59.962 50.0 0.00 0.00 44.61 2.24 R
2880 3067 0.035152 ATCCGAAACCTGCATGCTGA 60.035 50.0 24.53 1.45 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.807538 GCAGCGACGACGACCCTA 61.808 66.667 12.29 0.00 42.66 3.53
35 36 2.872557 CAGCGACGACGACCCTAA 59.127 61.111 12.29 0.00 42.66 2.69
36 37 1.432251 CAGCGACGACGACCCTAAT 59.568 57.895 12.29 0.00 42.66 1.73
37 38 0.591741 CAGCGACGACGACCCTAATC 60.592 60.000 12.29 0.00 42.66 1.75
38 39 0.747283 AGCGACGACGACCCTAATCT 60.747 55.000 12.29 0.00 42.66 2.40
39 40 0.940126 GCGACGACGACCCTAATCTA 59.060 55.000 12.29 0.00 42.66 1.98
40 41 1.070041 GCGACGACGACCCTAATCTAG 60.070 57.143 12.29 0.00 42.66 2.43
41 42 2.208431 CGACGACGACCCTAATCTAGT 58.792 52.381 0.00 0.00 42.66 2.57
42 43 2.611292 CGACGACGACCCTAATCTAGTT 59.389 50.000 0.00 0.00 42.66 2.24
43 44 3.064545 CGACGACGACCCTAATCTAGTTT 59.935 47.826 0.00 0.00 42.66 2.66
44 45 4.596097 GACGACGACCCTAATCTAGTTTC 58.404 47.826 0.00 0.00 0.00 2.78
45 46 4.268359 ACGACGACCCTAATCTAGTTTCT 58.732 43.478 0.00 0.00 0.00 2.52
46 47 4.704057 ACGACGACCCTAATCTAGTTTCTT 59.296 41.667 0.00 0.00 0.00 2.52
47 48 5.184671 ACGACGACCCTAATCTAGTTTCTTT 59.815 40.000 0.00 0.00 0.00 2.52
48 49 6.098017 CGACGACCCTAATCTAGTTTCTTTT 58.902 40.000 0.00 0.00 0.00 2.27
49 50 7.094205 ACGACGACCCTAATCTAGTTTCTTTTA 60.094 37.037 0.00 0.00 0.00 1.52
50 51 7.756722 CGACGACCCTAATCTAGTTTCTTTTAA 59.243 37.037 0.00 0.00 0.00 1.52
51 52 8.999220 ACGACCCTAATCTAGTTTCTTTTAAG 57.001 34.615 0.00 0.00 0.00 1.85
52 53 8.591940 ACGACCCTAATCTAGTTTCTTTTAAGT 58.408 33.333 0.00 0.00 0.00 2.24
53 54 8.870879 CGACCCTAATCTAGTTTCTTTTAAGTG 58.129 37.037 0.00 0.00 0.00 3.16
54 55 9.722184 GACCCTAATCTAGTTTCTTTTAAGTGT 57.278 33.333 0.00 0.00 0.00 3.55
91 92 9.853555 TTGTTTATATTAATGTGCTGAACTTGG 57.146 29.630 0.00 0.00 0.00 3.61
92 93 8.465999 TGTTTATATTAATGTGCTGAACTTGGG 58.534 33.333 0.00 0.00 0.00 4.12
93 94 8.466798 GTTTATATTAATGTGCTGAACTTGGGT 58.533 33.333 0.00 0.00 0.00 4.51
94 95 9.688091 TTTATATTAATGTGCTGAACTTGGGTA 57.312 29.630 0.00 0.00 0.00 3.69
95 96 9.688091 TTATATTAATGTGCTGAACTTGGGTAA 57.312 29.630 0.00 0.00 0.00 2.85
96 97 6.909550 ATTAATGTGCTGAACTTGGGTAAA 57.090 33.333 0.00 0.00 0.00 2.01
97 98 4.853924 AATGTGCTGAACTTGGGTAAAG 57.146 40.909 0.00 0.00 42.07 1.85
112 113 7.604657 TTGGGTAAAGTGGATGTTTTAATGT 57.395 32.000 0.00 0.00 0.00 2.71
113 114 7.604657 TGGGTAAAGTGGATGTTTTAATGTT 57.395 32.000 0.00 0.00 0.00 2.71
114 115 8.024145 TGGGTAAAGTGGATGTTTTAATGTTT 57.976 30.769 0.00 0.00 0.00 2.83
115 116 9.144298 TGGGTAAAGTGGATGTTTTAATGTTTA 57.856 29.630 0.00 0.00 0.00 2.01
160 161 7.573968 TTCCAATGTTTATTTGGGTTTTTGG 57.426 32.000 2.84 0.00 33.92 3.28
161 162 6.064717 TCCAATGTTTATTTGGGTTTTTGGG 58.935 36.000 2.84 0.00 33.55 4.12
162 163 5.242615 CCAATGTTTATTTGGGTTTTTGGGG 59.757 40.000 0.00 0.00 0.00 4.96
163 164 5.654901 ATGTTTATTTGGGTTTTTGGGGT 57.345 34.783 0.00 0.00 0.00 4.95
164 165 5.452341 TGTTTATTTGGGTTTTTGGGGTT 57.548 34.783 0.00 0.00 0.00 4.11
165 166 5.827756 TGTTTATTTGGGTTTTTGGGGTTT 58.172 33.333 0.00 0.00 0.00 3.27
166 167 6.965607 TGTTTATTTGGGTTTTTGGGGTTTA 58.034 32.000 0.00 0.00 0.00 2.01
167 168 7.407729 TGTTTATTTGGGTTTTTGGGGTTTAA 58.592 30.769 0.00 0.00 0.00 1.52
168 169 7.891712 TGTTTATTTGGGTTTTTGGGGTTTAAA 59.108 29.630 0.00 0.00 0.00 1.52
169 170 8.915036 GTTTATTTGGGTTTTTGGGGTTTAAAT 58.085 29.630 0.00 0.00 0.00 1.40
170 171 9.488762 TTTATTTGGGTTTTTGGGGTTTAAATT 57.511 25.926 0.00 0.00 0.00 1.82
171 172 7.589958 ATTTGGGTTTTTGGGGTTTAAATTC 57.410 32.000 0.00 0.00 0.00 2.17
172 173 5.710409 TGGGTTTTTGGGGTTTAAATTCA 57.290 34.783 0.00 0.00 0.00 2.57
173 174 5.437946 TGGGTTTTTGGGGTTTAAATTCAC 58.562 37.500 0.00 0.00 0.00 3.18
174 175 4.512198 GGGTTTTTGGGGTTTAAATTCACG 59.488 41.667 0.00 0.00 0.00 4.35
175 176 5.117584 GGTTTTTGGGGTTTAAATTCACGT 58.882 37.500 0.00 0.00 0.00 4.49
176 177 5.234757 GGTTTTTGGGGTTTAAATTCACGTC 59.765 40.000 0.00 0.00 0.00 4.34
177 178 4.587584 TTTGGGGTTTAAATTCACGTCC 57.412 40.909 0.00 0.00 0.00 4.79
178 179 3.225177 TGGGGTTTAAATTCACGTCCA 57.775 42.857 0.00 0.00 0.00 4.02
179 180 3.768878 TGGGGTTTAAATTCACGTCCAT 58.231 40.909 0.00 0.00 0.00 3.41
180 181 4.919793 TGGGGTTTAAATTCACGTCCATA 58.080 39.130 0.00 0.00 0.00 2.74
181 182 5.322754 TGGGGTTTAAATTCACGTCCATAA 58.677 37.500 0.00 0.00 0.00 1.90
182 183 5.773680 TGGGGTTTAAATTCACGTCCATAAA 59.226 36.000 0.00 0.00 0.00 1.40
183 184 6.267014 TGGGGTTTAAATTCACGTCCATAAAA 59.733 34.615 0.00 0.00 0.00 1.52
184 185 7.153315 GGGGTTTAAATTCACGTCCATAAAAA 58.847 34.615 0.00 0.00 0.00 1.94
185 186 7.116662 GGGGTTTAAATTCACGTCCATAAAAAC 59.883 37.037 0.00 0.00 0.00 2.43
186 187 7.868922 GGGTTTAAATTCACGTCCATAAAAACT 59.131 33.333 0.00 0.00 0.00 2.66
187 188 8.696175 GGTTTAAATTCACGTCCATAAAAACTG 58.304 33.333 0.00 0.00 0.00 3.16
188 189 9.453325 GTTTAAATTCACGTCCATAAAAACTGA 57.547 29.630 0.00 0.00 0.00 3.41
189 190 9.453325 TTTAAATTCACGTCCATAAAAACTGAC 57.547 29.630 0.00 0.00 0.00 3.51
190 191 6.627395 AATTCACGTCCATAAAAACTGACA 57.373 33.333 0.00 0.00 0.00 3.58
191 192 5.666969 TTCACGTCCATAAAAACTGACAG 57.333 39.130 0.00 0.00 0.00 3.51
192 193 4.699637 TCACGTCCATAAAAACTGACAGT 58.300 39.130 1.07 1.07 0.00 3.55
193 194 5.120399 TCACGTCCATAAAAACTGACAGTT 58.880 37.500 15.23 15.23 40.80 3.16
195 196 5.681105 CACGTCCATAAAAACTGACAGTTTG 59.319 40.000 29.37 19.20 46.78 2.93
196 197 4.675114 CGTCCATAAAAACTGACAGTTTGC 59.325 41.667 29.37 14.58 46.78 3.68
197 198 4.675114 GTCCATAAAAACTGACAGTTTGCG 59.325 41.667 29.37 18.57 46.78 4.85
198 199 3.980775 CCATAAAAACTGACAGTTTGCGG 59.019 43.478 29.37 22.35 46.78 5.69
199 200 4.499019 CCATAAAAACTGACAGTTTGCGGT 60.499 41.667 29.37 18.53 46.78 5.68
200 201 2.559998 AAAACTGACAGTTTGCGGTG 57.440 45.000 29.37 0.00 46.78 4.94
201 202 0.100503 AAACTGACAGTTTGCGGTGC 59.899 50.000 28.42 0.00 45.83 5.01
202 203 2.047151 AACTGACAGTTTGCGGTGCG 62.047 55.000 15.23 0.00 34.11 5.34
203 204 2.202946 TGACAGTTTGCGGTGCGA 60.203 55.556 0.00 0.00 0.00 5.10
204 205 1.568612 CTGACAGTTTGCGGTGCGAT 61.569 55.000 0.00 0.00 0.00 4.58
205 206 1.132640 GACAGTTTGCGGTGCGATC 59.867 57.895 0.00 0.00 0.00 3.69
206 207 2.096406 CAGTTTGCGGTGCGATCG 59.904 61.111 11.69 11.69 0.00 3.69
207 208 3.118454 AGTTTGCGGTGCGATCGG 61.118 61.111 18.30 0.43 0.00 4.18
208 209 3.419759 GTTTGCGGTGCGATCGGT 61.420 61.111 18.30 0.00 0.00 4.69
209 210 3.115892 TTTGCGGTGCGATCGGTC 61.116 61.111 18.30 0.98 0.00 4.79
213 214 4.789075 CGGTGCGATCGGTCCGTT 62.789 66.667 18.30 2.07 38.45 4.44
214 215 3.186047 GGTGCGATCGGTCCGTTG 61.186 66.667 18.30 4.08 0.00 4.10
215 216 3.186047 GTGCGATCGGTCCGTTGG 61.186 66.667 18.30 5.53 0.00 3.77
216 217 4.444838 TGCGATCGGTCCGTTGGG 62.445 66.667 18.30 0.72 0.00 4.12
233 234 4.147322 GCGCACCGACAACCGATG 62.147 66.667 0.30 0.00 41.76 3.84
234 235 2.431771 CGCACCGACAACCGATGA 60.432 61.111 0.00 0.00 41.76 2.92
235 236 2.726691 CGCACCGACAACCGATGAC 61.727 63.158 0.00 0.00 41.76 3.06
236 237 2.388232 GCACCGACAACCGATGACC 61.388 63.158 0.00 0.00 41.76 4.02
237 238 1.005512 CACCGACAACCGATGACCA 60.006 57.895 0.00 0.00 41.76 4.02
238 239 1.005394 ACCGACAACCGATGACCAC 60.005 57.895 0.00 0.00 41.76 4.16
239 240 1.005512 CCGACAACCGATGACCACA 60.006 57.895 0.00 0.00 41.76 4.17
240 241 0.601576 CCGACAACCGATGACCACAA 60.602 55.000 0.00 0.00 41.76 3.33
241 242 0.790207 CGACAACCGATGACCACAAG 59.210 55.000 0.00 0.00 41.76 3.16
242 243 0.517316 GACAACCGATGACCACAAGC 59.483 55.000 0.00 0.00 0.00 4.01
243 244 1.227999 ACAACCGATGACCACAAGCG 61.228 55.000 0.00 0.00 0.00 4.68
244 245 0.948623 CAACCGATGACCACAAGCGA 60.949 55.000 0.00 0.00 32.48 4.93
245 246 0.250124 AACCGATGACCACAAGCGAA 60.250 50.000 0.00 0.00 32.48 4.70
246 247 0.949105 ACCGATGACCACAAGCGAAC 60.949 55.000 0.00 0.00 32.48 3.95
247 248 1.416049 CGATGACCACAAGCGAACG 59.584 57.895 0.00 0.00 32.48 3.95
248 249 1.006825 CGATGACCACAAGCGAACGA 61.007 55.000 0.00 0.00 32.48 3.85
249 250 0.438830 GATGACCACAAGCGAACGAC 59.561 55.000 0.00 0.00 0.00 4.34
250 251 0.949105 ATGACCACAAGCGAACGACC 60.949 55.000 0.00 0.00 0.00 4.79
251 252 2.654912 GACCACAAGCGAACGACCG 61.655 63.158 0.00 0.00 0.00 4.79
252 253 2.660552 CCACAAGCGAACGACCGT 60.661 61.111 0.00 0.00 0.00 4.83
253 254 2.544359 CACAAGCGAACGACCGTG 59.456 61.111 0.00 0.00 0.00 4.94
254 255 2.105528 ACAAGCGAACGACCGTGT 59.894 55.556 0.00 0.00 0.00 4.49
255 256 1.947642 ACAAGCGAACGACCGTGTC 60.948 57.895 0.00 0.00 0.00 3.67
256 257 2.355481 AAGCGAACGACCGTGTCC 60.355 61.111 0.00 0.00 0.00 4.02
257 258 4.695231 AGCGAACGACCGTGTCCG 62.695 66.667 0.00 2.26 0.00 4.79
258 259 4.988486 GCGAACGACCGTGTCCGT 62.988 66.667 0.00 0.00 41.14 4.69
261 262 4.519182 AACGACCGTGTCCGTTTT 57.481 50.000 0.00 0.00 45.30 2.43
262 263 2.300533 AACGACCGTGTCCGTTTTC 58.699 52.632 0.00 0.00 45.30 2.29
263 264 0.179103 AACGACCGTGTCCGTTTTCT 60.179 50.000 0.00 0.00 45.30 2.52
264 265 0.872881 ACGACCGTGTCCGTTTTCTG 60.873 55.000 0.00 0.00 35.21 3.02
265 266 1.568025 GACCGTGTCCGTTTTCTGC 59.432 57.895 0.00 0.00 0.00 4.26
266 267 1.838568 GACCGTGTCCGTTTTCTGCC 61.839 60.000 0.00 0.00 0.00 4.85
267 268 1.597027 CCGTGTCCGTTTTCTGCCT 60.597 57.895 0.00 0.00 0.00 4.75
268 269 1.566018 CCGTGTCCGTTTTCTGCCTC 61.566 60.000 0.00 0.00 0.00 4.70
269 270 0.878523 CGTGTCCGTTTTCTGCCTCA 60.879 55.000 0.00 0.00 0.00 3.86
270 271 1.305201 GTGTCCGTTTTCTGCCTCAA 58.695 50.000 0.00 0.00 0.00 3.02
271 272 1.002792 GTGTCCGTTTTCTGCCTCAAC 60.003 52.381 0.00 0.00 0.00 3.18
272 273 0.591659 GTCCGTTTTCTGCCTCAACC 59.408 55.000 0.00 0.00 0.00 3.77
273 274 0.882927 TCCGTTTTCTGCCTCAACCG 60.883 55.000 0.00 0.00 0.00 4.44
274 275 1.574428 CGTTTTCTGCCTCAACCGG 59.426 57.895 0.00 0.00 0.00 5.28
275 276 0.882927 CGTTTTCTGCCTCAACCGGA 60.883 55.000 9.46 0.00 0.00 5.14
276 277 0.591659 GTTTTCTGCCTCAACCGGAC 59.408 55.000 9.46 0.00 0.00 4.79
277 278 0.181587 TTTTCTGCCTCAACCGGACA 59.818 50.000 9.46 0.00 0.00 4.02
278 279 0.181587 TTTCTGCCTCAACCGGACAA 59.818 50.000 9.46 0.00 0.00 3.18
279 280 0.181587 TTCTGCCTCAACCGGACAAA 59.818 50.000 9.46 0.00 0.00 2.83
280 281 0.181587 TCTGCCTCAACCGGACAAAA 59.818 50.000 9.46 0.00 0.00 2.44
281 282 1.028905 CTGCCTCAACCGGACAAAAA 58.971 50.000 9.46 0.00 0.00 1.94
300 301 4.452890 AAAACAGATGAAACAGACGTCG 57.547 40.909 10.46 7.86 0.00 5.12
301 302 2.795175 ACAGATGAAACAGACGTCGT 57.205 45.000 10.46 8.54 0.00 4.34
302 303 3.093717 ACAGATGAAACAGACGTCGTT 57.906 42.857 16.42 16.42 0.00 3.85
303 304 3.454375 ACAGATGAAACAGACGTCGTTT 58.546 40.909 26.77 26.77 39.23 3.60
304 305 3.245284 ACAGATGAAACAGACGTCGTTTG 59.755 43.478 29.53 21.70 36.72 2.93
305 306 2.800544 AGATGAAACAGACGTCGTTTGG 59.199 45.455 29.53 14.72 36.72 3.28
306 307 1.292061 TGAAACAGACGTCGTTTGGG 58.708 50.000 29.53 13.32 36.72 4.12
307 308 1.292992 GAAACAGACGTCGTTTGGGT 58.707 50.000 29.53 15.06 36.72 4.51
308 309 1.259770 GAAACAGACGTCGTTTGGGTC 59.740 52.381 29.53 18.21 36.72 4.46
309 310 0.872881 AACAGACGTCGTTTGGGTCG 60.873 55.000 18.85 0.00 35.87 4.79
310 311 1.299620 CAGACGTCGTTTGGGTCGT 60.300 57.895 10.46 0.00 39.21 4.34
311 312 1.299620 AGACGTCGTTTGGGTCGTG 60.300 57.895 10.46 0.00 36.67 4.35
312 313 2.935446 GACGTCGTTTGGGTCGTGC 61.935 63.158 0.00 0.00 36.67 5.34
313 314 2.660552 CGTCGTTTGGGTCGTGCT 60.661 61.111 0.00 0.00 0.00 4.40
314 315 2.241880 CGTCGTTTGGGTCGTGCTT 61.242 57.895 0.00 0.00 0.00 3.91
315 316 1.768112 CGTCGTTTGGGTCGTGCTTT 61.768 55.000 0.00 0.00 0.00 3.51
316 317 1.219646 GTCGTTTGGGTCGTGCTTTA 58.780 50.000 0.00 0.00 0.00 1.85
317 318 1.193874 GTCGTTTGGGTCGTGCTTTAG 59.806 52.381 0.00 0.00 0.00 1.85
318 319 0.515564 CGTTTGGGTCGTGCTTTAGG 59.484 55.000 0.00 0.00 0.00 2.69
319 320 0.879090 GTTTGGGTCGTGCTTTAGGG 59.121 55.000 0.00 0.00 0.00 3.53
320 321 0.475044 TTTGGGTCGTGCTTTAGGGT 59.525 50.000 0.00 0.00 0.00 4.34
321 322 0.475044 TTGGGTCGTGCTTTAGGGTT 59.525 50.000 0.00 0.00 0.00 4.11
322 323 0.250553 TGGGTCGTGCTTTAGGGTTG 60.251 55.000 0.00 0.00 0.00 3.77
323 324 0.958876 GGGTCGTGCTTTAGGGTTGG 60.959 60.000 0.00 0.00 0.00 3.77
324 325 1.583495 GGTCGTGCTTTAGGGTTGGC 61.583 60.000 0.00 0.00 0.00 4.52
325 326 1.302993 TCGTGCTTTAGGGTTGGCC 60.303 57.895 0.00 0.00 0.00 5.36
326 327 1.602323 CGTGCTTTAGGGTTGGCCA 60.602 57.895 0.00 0.00 36.17 5.36
327 328 1.175983 CGTGCTTTAGGGTTGGCCAA 61.176 55.000 16.05 16.05 36.17 4.52
328 329 0.603065 GTGCTTTAGGGTTGGCCAAG 59.397 55.000 21.21 6.15 36.17 3.61
329 330 0.541764 TGCTTTAGGGTTGGCCAAGG 60.542 55.000 21.21 0.00 36.17 3.61
330 331 1.257750 GCTTTAGGGTTGGCCAAGGG 61.258 60.000 21.21 5.23 36.17 3.95
343 344 1.851304 CCAAGGGCATGTACAATGGT 58.149 50.000 0.00 0.00 0.00 3.55
344 345 2.178580 CCAAGGGCATGTACAATGGTT 58.821 47.619 0.00 0.00 0.00 3.67
345 346 3.360867 CCAAGGGCATGTACAATGGTTA 58.639 45.455 0.00 0.00 0.00 2.85
346 347 3.766591 CCAAGGGCATGTACAATGGTTAA 59.233 43.478 0.00 0.00 0.00 2.01
347 348 4.405358 CCAAGGGCATGTACAATGGTTAAT 59.595 41.667 0.00 0.00 0.00 1.40
348 349 5.596361 CCAAGGGCATGTACAATGGTTAATA 59.404 40.000 0.00 0.00 0.00 0.98
349 350 6.097554 CCAAGGGCATGTACAATGGTTAATAA 59.902 38.462 0.00 0.00 0.00 1.40
350 351 6.959639 AGGGCATGTACAATGGTTAATAAG 57.040 37.500 0.00 0.00 0.00 1.73
351 352 6.668645 AGGGCATGTACAATGGTTAATAAGA 58.331 36.000 0.00 0.00 0.00 2.10
352 353 7.297614 AGGGCATGTACAATGGTTAATAAGAT 58.702 34.615 0.00 0.00 0.00 2.40
353 354 8.444783 AGGGCATGTACAATGGTTAATAAGATA 58.555 33.333 0.00 0.00 0.00 1.98
354 355 8.730680 GGGCATGTACAATGGTTAATAAGATAG 58.269 37.037 0.00 0.00 0.00 2.08
355 356 9.284968 GGCATGTACAATGGTTAATAAGATAGT 57.715 33.333 0.00 0.00 0.00 2.12
373 374 7.719871 AGATAGTCTTACCTTAAGTCTTGCA 57.280 36.000 0.97 0.00 36.05 4.08
374 375 8.312669 AGATAGTCTTACCTTAAGTCTTGCAT 57.687 34.615 0.97 0.00 36.05 3.96
375 376 8.200792 AGATAGTCTTACCTTAAGTCTTGCATG 58.799 37.037 0.97 0.00 36.05 4.06
376 377 6.115448 AGTCTTACCTTAAGTCTTGCATGT 57.885 37.500 0.97 0.00 37.10 3.21
377 378 7.241042 AGTCTTACCTTAAGTCTTGCATGTA 57.759 36.000 0.97 0.00 37.10 2.29
378 379 7.676947 AGTCTTACCTTAAGTCTTGCATGTAA 58.323 34.615 0.97 0.00 37.10 2.41
379 380 8.322091 AGTCTTACCTTAAGTCTTGCATGTAAT 58.678 33.333 0.97 0.00 37.10 1.89
380 381 8.947115 GTCTTACCTTAAGTCTTGCATGTAATT 58.053 33.333 0.97 0.00 37.10 1.40
381 382 9.515226 TCTTACCTTAAGTCTTGCATGTAATTT 57.485 29.630 0.97 0.00 37.10 1.82
385 386 9.167311 ACCTTAAGTCTTGCATGTAATTTAGAG 57.833 33.333 0.97 0.00 0.00 2.43
386 387 9.167311 CCTTAAGTCTTGCATGTAATTTAGAGT 57.833 33.333 0.97 0.00 0.00 3.24
389 390 6.846350 AGTCTTGCATGTAATTTAGAGTTGC 58.154 36.000 0.00 0.00 0.00 4.17
390 391 6.430925 AGTCTTGCATGTAATTTAGAGTTGCA 59.569 34.615 0.00 0.00 36.89 4.08
391 392 7.040478 AGTCTTGCATGTAATTTAGAGTTGCAA 60.040 33.333 11.71 11.71 43.84 4.08
392 393 7.594758 GTCTTGCATGTAATTTAGAGTTGCAAA 59.405 33.333 0.00 5.22 44.90 3.68
393 394 8.140628 TCTTGCATGTAATTTAGAGTTGCAAAA 58.859 29.630 0.00 0.00 44.90 2.44
394 395 8.654230 TTGCATGTAATTTAGAGTTGCAAAAA 57.346 26.923 0.00 0.00 43.31 1.94
424 425 9.905713 TGTCTACAATTAATCATCTTTTAGCCT 57.094 29.630 0.00 0.00 0.00 4.58
478 479 8.613060 AATATGGTGAGACATATTGTGCTAAG 57.387 34.615 9.82 0.00 46.68 2.18
479 480 5.675684 TGGTGAGACATATTGTGCTAAGA 57.324 39.130 0.00 0.00 0.00 2.10
480 481 5.664457 TGGTGAGACATATTGTGCTAAGAG 58.336 41.667 0.00 0.00 0.00 2.85
481 482 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
482 483 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
483 484 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
484 485 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
485 486 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
486 487 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
487 488 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
488 489 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
489 490 7.960262 ACATATTGTGCTAAGAGATCATCTCA 58.040 34.615 17.27 0.00 45.73 3.27
490 491 8.595421 ACATATTGTGCTAAGAGATCATCTCAT 58.405 33.333 17.27 7.56 45.73 2.90
491 492 8.874816 CATATTGTGCTAAGAGATCATCTCATG 58.125 37.037 17.27 7.23 45.73 3.07
492 493 5.866159 TGTGCTAAGAGATCATCTCATGT 57.134 39.130 17.27 4.29 45.73 3.21
493 494 6.231258 TGTGCTAAGAGATCATCTCATGTT 57.769 37.500 17.27 5.25 45.73 2.71
494 495 6.647229 TGTGCTAAGAGATCATCTCATGTTT 58.353 36.000 17.27 4.90 45.73 2.83
495 496 7.108194 TGTGCTAAGAGATCATCTCATGTTTT 58.892 34.615 17.27 4.54 45.73 2.43
496 497 7.279536 TGTGCTAAGAGATCATCTCATGTTTTC 59.720 37.037 17.27 2.75 45.73 2.29
497 498 7.495279 GTGCTAAGAGATCATCTCATGTTTTCT 59.505 37.037 17.27 0.00 45.73 2.52
498 499 8.045507 TGCTAAGAGATCATCTCATGTTTTCTT 58.954 33.333 17.27 2.44 45.73 2.52
499 500 8.891720 GCTAAGAGATCATCTCATGTTTTCTTT 58.108 33.333 17.27 1.75 45.73 2.52
532 533 9.836864 AAAAAGACAAGCCTTTTCTTATGATTT 57.163 25.926 6.30 1.61 43.32 2.17
533 534 9.481340 AAAAGACAAGCCTTTTCTTATGATTTC 57.519 29.630 6.30 0.00 41.08 2.17
534 535 8.414629 AAGACAAGCCTTTTCTTATGATTTCT 57.585 30.769 4.07 0.00 0.00 2.52
535 536 8.414629 AGACAAGCCTTTTCTTATGATTTCTT 57.585 30.769 0.00 0.00 0.00 2.52
536 537 8.864087 AGACAAGCCTTTTCTTATGATTTCTTT 58.136 29.630 0.00 0.00 0.00 2.52
537 538 9.133627 GACAAGCCTTTTCTTATGATTTCTTTC 57.866 33.333 0.00 0.00 0.00 2.62
538 539 8.864087 ACAAGCCTTTTCTTATGATTTCTTTCT 58.136 29.630 0.00 0.00 0.00 2.52
539 540 9.351570 CAAGCCTTTTCTTATGATTTCTTTCTC 57.648 33.333 0.00 0.00 0.00 2.87
540 541 8.641498 AGCCTTTTCTTATGATTTCTTTCTCA 57.359 30.769 0.00 0.00 0.00 3.27
541 542 9.252635 AGCCTTTTCTTATGATTTCTTTCTCAT 57.747 29.630 0.00 0.00 36.19 2.90
542 543 9.513727 GCCTTTTCTTATGATTTCTTTCTCATC 57.486 33.333 0.00 0.00 34.14 2.92
558 559 9.993454 TCTTTCTCATCTACTCATCATTTATGG 57.007 33.333 0.00 0.00 36.15 2.74
559 560 9.775854 CTTTCTCATCTACTCATCATTTATGGT 57.224 33.333 0.00 0.00 36.15 3.55
581 582 8.877864 TGGTATTTCTAAGATCAAACCATTGT 57.122 30.769 0.00 0.00 37.79 2.71
582 583 9.967451 TGGTATTTCTAAGATCAAACCATTGTA 57.033 29.630 0.00 0.00 37.79 2.41
589 590 9.056005 TCTAAGATCAAACCATTGTACATATGC 57.944 33.333 1.58 0.00 37.79 3.14
590 591 6.639632 AGATCAAACCATTGTACATATGCC 57.360 37.500 1.58 0.00 37.79 4.40
591 592 5.536161 AGATCAAACCATTGTACATATGCCC 59.464 40.000 1.58 0.00 37.79 5.36
592 593 4.865905 TCAAACCATTGTACATATGCCCT 58.134 39.130 1.58 0.00 37.79 5.19
593 594 6.007485 TCAAACCATTGTACATATGCCCTA 57.993 37.500 1.58 0.00 37.79 3.53
594 595 6.427441 TCAAACCATTGTACATATGCCCTAA 58.573 36.000 1.58 0.00 37.79 2.69
595 596 7.066142 TCAAACCATTGTACATATGCCCTAAT 58.934 34.615 1.58 0.00 37.79 1.73
607 608 7.212274 ACATATGCCCTAATTTTGCTTGATTC 58.788 34.615 1.58 0.00 0.00 2.52
630 631 3.785859 GCCATCTCAGCCCACCGA 61.786 66.667 0.00 0.00 0.00 4.69
687 689 0.037734 AAGGAAGCGGGAAACGGAAT 59.962 50.000 0.00 0.00 44.51 3.01
692 694 2.188062 AGCGGGAAACGGAATAAACA 57.812 45.000 0.00 0.00 44.51 2.83
896 898 0.898320 CCTCCCGCCCATAGATACTG 59.102 60.000 0.00 0.00 0.00 2.74
912 914 3.723235 CTGTCCCTCCACGCATCGG 62.723 68.421 0.00 0.00 0.00 4.18
982 987 6.064735 AGGGTTTACGATTGGTATTTGGTA 57.935 37.500 0.00 0.00 0.00 3.25
1069 1074 2.338984 GTGAAGCCGTCGTGGACT 59.661 61.111 0.51 0.00 42.00 3.85
1075 1080 2.100631 GCCGTCGTGGACTTGGATG 61.101 63.158 0.51 0.00 42.00 3.51
1207 1218 1.547372 CTGCCCCCTTGTTTCAATCAG 59.453 52.381 0.00 0.00 0.00 2.90
1272 1286 3.504520 GGGAGGTCGAGAGCTAAGATAAG 59.495 52.174 4.68 0.00 39.57 1.73
1284 1298 1.895020 AAGATAAGGCGCCGTGTGGA 61.895 55.000 25.89 4.87 37.49 4.02
1308 1322 1.075301 TGGATCTGGAGGCGGATGA 60.075 57.895 0.00 0.00 0.00 2.92
1315 1329 0.394192 TGGAGGCGGATGATGATCAC 59.606 55.000 0.00 0.00 0.00 3.06
1377 1391 3.919804 GCGAGTGCTAAATTGCAAATCAA 59.080 39.130 1.71 0.00 45.12 2.57
1378 1392 4.563976 GCGAGTGCTAAATTGCAAATCAAT 59.436 37.500 1.71 0.00 45.12 2.57
1382 1397 7.359431 CGAGTGCTAAATTGCAAATCAATGTTT 60.359 33.333 1.71 0.00 44.23 2.83
1458 1473 2.031560 TCATGTTTCGATTGGCGCATAC 59.968 45.455 10.83 0.00 40.61 2.39
1463 1478 3.446310 TTCGATTGGCGCATACTTCTA 57.554 42.857 10.83 0.00 40.61 2.10
1520 1535 9.801714 GATTTTTATTTCACATGCTCTGTTTTG 57.198 29.630 0.00 0.00 35.29 2.44
1521 1536 6.768029 TTTATTTCACATGCTCTGTTTTGC 57.232 33.333 0.00 0.00 35.29 3.68
1522 1537 4.595762 ATTTCACATGCTCTGTTTTGCT 57.404 36.364 0.00 0.00 35.29 3.91
1526 1541 2.722629 CACATGCTCTGTTTTGCTTTCG 59.277 45.455 0.00 0.00 35.29 3.46
1527 1542 2.358898 ACATGCTCTGTTTTGCTTTCGT 59.641 40.909 0.00 0.00 32.90 3.85
1528 1543 3.181487 ACATGCTCTGTTTTGCTTTCGTT 60.181 39.130 0.00 0.00 32.90 3.85
1529 1544 3.065019 TGCTCTGTTTTGCTTTCGTTC 57.935 42.857 0.00 0.00 0.00 3.95
1530 1545 2.223479 TGCTCTGTTTTGCTTTCGTTCC 60.223 45.455 0.00 0.00 0.00 3.62
1531 1546 2.223479 GCTCTGTTTTGCTTTCGTTCCA 60.223 45.455 0.00 0.00 0.00 3.53
1532 1547 3.733684 GCTCTGTTTTGCTTTCGTTCCAA 60.734 43.478 0.00 0.00 0.00 3.53
1533 1548 4.027572 TCTGTTTTGCTTTCGTTCCAAG 57.972 40.909 0.00 0.00 0.00 3.61
1534 1549 3.692101 TCTGTTTTGCTTTCGTTCCAAGA 59.308 39.130 0.00 0.00 0.00 3.02
1535 1550 4.027572 TGTTTTGCTTTCGTTCCAAGAG 57.972 40.909 0.00 0.00 0.00 2.85
1591 1606 8.150945 TCAGTCTAATGGAGGCATAAATAAGAC 58.849 37.037 0.00 0.00 29.21 3.01
1629 1644 4.812626 ACTGATAAAGACGTTTGTTTCGGT 59.187 37.500 0.00 0.00 0.00 4.69
1722 1785 0.596577 GGAACAAAAGGCGGAAGGTC 59.403 55.000 0.00 0.00 0.00 3.85
1951 2014 3.259425 CTGTGCCGTGCTTTGCTCC 62.259 63.158 0.00 0.00 0.00 4.70
1954 2017 3.741476 GCCGTGCTTTGCTCCCTG 61.741 66.667 0.00 0.00 0.00 4.45
1956 2019 2.328099 CCGTGCTTTGCTCCCTGTC 61.328 63.158 0.00 0.00 0.00 3.51
1962 2025 1.003003 GCTTTGCTCCCTGTCTCTCTT 59.997 52.381 0.00 0.00 0.00 2.85
1963 2026 2.551938 GCTTTGCTCCCTGTCTCTCTTT 60.552 50.000 0.00 0.00 0.00 2.52
1987 2050 4.524802 TTCAGAATATTCAGGTGGGCAT 57.475 40.909 17.56 0.00 0.00 4.40
2024 2202 8.982723 ACTAGAGTGTACATATGTCTTTCCATT 58.017 33.333 12.68 0.00 0.00 3.16
2042 2220 7.945033 TTCCATTTATTTGTTGAGCAGAAAC 57.055 32.000 0.00 0.00 0.00 2.78
2055 2233 1.226746 CAGAAACGGAACCAGTGACC 58.773 55.000 0.00 0.00 0.00 4.02
2084 2262 7.578310 ACTTTGATCCATATCCAACATCTTG 57.422 36.000 0.00 0.00 0.00 3.02
2089 2267 6.769341 TGATCCATATCCAACATCTTGTGAAG 59.231 38.462 0.00 0.00 0.00 3.02
2204 2382 5.749588 TGAATTGTGATTCTTTTGTGCTGTG 59.250 36.000 1.41 0.00 41.80 3.66
2206 2384 2.046313 GTGATTCTTTTGTGCTGTGCG 58.954 47.619 0.00 0.00 0.00 5.34
2218 2396 1.219124 CTGTGCGTGGGCTATGTCT 59.781 57.895 0.00 0.00 40.82 3.41
2238 2416 4.020485 GTCTTAGGCTCACCCTTTCTAACA 60.020 45.833 0.00 0.00 43.06 2.41
2260 2438 2.244651 ACAGCGAAACAGCACGGTC 61.245 57.895 0.00 0.00 40.15 4.79
2317 2495 2.280524 CCGACGTTCACTTGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
2505 2683 4.835615 TCAAGTCTGAGCTTAAAGTCCTCT 59.164 41.667 0.00 0.00 0.00 3.69
2553 2736 1.450312 AGCTTAGGATGGTGCGCAC 60.450 57.895 32.15 32.15 0.00 5.34
2612 2795 2.683968 TGAACTTCATAGCGTGTGACC 58.316 47.619 0.00 0.00 0.00 4.02
2616 2799 1.995484 CTTCATAGCGTGTGACCTGTG 59.005 52.381 0.00 0.00 0.00 3.66
2690 2875 0.465705 ATCGATCGATGCACCACCTT 59.534 50.000 28.90 1.98 32.98 3.50
2694 2879 1.852157 ATCGATGCACCACCTTGGGT 61.852 55.000 0.00 0.00 43.37 4.51
2695 2880 1.195442 TCGATGCACCACCTTGGGTA 61.195 55.000 0.00 0.00 43.37 3.69
2770 2957 1.994779 GGTTCTTGAATTTGCATGCCG 59.005 47.619 16.68 0.00 0.00 5.69
2780 2967 0.874390 TTGCATGCCGTTCTGAAGTC 59.126 50.000 16.68 0.00 0.00 3.01
2799 2986 4.579869 AGTCTGGTGCAATAGTAGGTTTG 58.420 43.478 0.00 0.00 0.00 2.93
2812 2999 5.582689 AGTAGGTTTGGCATTTTCTATGC 57.417 39.130 1.21 1.21 43.85 3.14
2880 3067 4.343231 TCCATTCCATGCACATAAACAGT 58.657 39.130 0.00 0.00 0.00 3.55
2949 3136 4.140924 AGAGGAATTTTGGACTTGTCCCTT 60.141 41.667 16.23 5.73 0.00 3.95
2953 3140 4.937201 ATTTTGGACTTGTCCCTTTGTC 57.063 40.909 16.23 0.00 0.00 3.18
2968 3155 0.599991 TTGTCGATGTCGCAACAGCT 60.600 50.000 0.00 0.00 39.68 4.24
3074 3261 1.950484 GCCCGAACTGGTGATGTGATT 60.950 52.381 0.00 0.00 35.15 2.57
3086 3273 6.420638 TGGTGATGTGATTTGATCTGATCTT 58.579 36.000 17.82 3.99 0.00 2.40
3099 3286 1.883275 CTGATCTTATCGACTCGGGCT 59.117 52.381 0.00 0.00 0.00 5.19
3149 3364 2.475111 TCGAGAAACTTGACGAACATGC 59.525 45.455 0.00 0.00 0.00 4.06
3164 3379 3.086391 ATGCCATCGCTCTCGCACT 62.086 57.895 0.00 0.00 33.31 4.40
3165 3380 3.260483 GCCATCGCTCTCGCACTG 61.260 66.667 0.00 0.00 35.30 3.66
3224 3442 2.017138 GCTCCACTAGCCTGTCTTTC 57.983 55.000 0.00 0.00 46.25 2.62
3281 3500 7.492352 TCCTTTAGGTCTTCTTTTTCTTTCG 57.508 36.000 0.00 0.00 36.34 3.46
3348 3569 6.070021 TCCATCACATGACAGTATTCCTCTTT 60.070 38.462 0.00 0.00 0.00 2.52
3349 3570 6.037940 CCATCACATGACAGTATTCCTCTTTG 59.962 42.308 0.00 0.00 0.00 2.77
3353 3574 7.502226 TCACATGACAGTATTCCTCTTTGTTTT 59.498 33.333 0.00 0.00 0.00 2.43
3361 3582 6.719829 AGTATTCCTCTTTGTTTTACCCCAAG 59.280 38.462 0.00 0.00 0.00 3.61
3362 3583 3.227614 TCCTCTTTGTTTTACCCCAAGC 58.772 45.455 0.00 0.00 0.00 4.01
3370 3591 3.161866 GTTTTACCCCAAGCAAGGATCA 58.838 45.455 0.00 0.00 0.00 2.92
3375 3596 2.029623 CCCCAAGCAAGGATCATCAAG 58.970 52.381 0.00 0.00 0.00 3.02
3376 3597 2.622452 CCCCAAGCAAGGATCATCAAGT 60.622 50.000 0.00 0.00 0.00 3.16
3377 3598 2.686915 CCCAAGCAAGGATCATCAAGTC 59.313 50.000 0.00 0.00 0.00 3.01
3378 3599 2.686915 CCAAGCAAGGATCATCAAGTCC 59.313 50.000 0.00 0.00 34.64 3.85
3379 3600 3.349927 CAAGCAAGGATCATCAAGTCCA 58.650 45.455 0.00 0.00 36.96 4.02
3380 3601 2.996631 AGCAAGGATCATCAAGTCCAC 58.003 47.619 0.00 0.00 36.96 4.02
3450 3671 0.893270 TGCCTTGATTTGGACACCCG 60.893 55.000 0.00 0.00 34.29 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.494336 CCGCCTACTCGTCGTCGT 61.494 66.667 1.33 0.00 38.33 4.34
1 2 4.883300 GCCGCCTACTCGTCGTCG 62.883 72.222 0.00 0.00 38.55 5.12
2 3 3.736482 CTGCCGCCTACTCGTCGTC 62.736 68.421 0.00 0.00 0.00 4.20
3 4 3.812019 CTGCCGCCTACTCGTCGT 61.812 66.667 0.00 0.00 0.00 4.34
17 18 2.609183 ATTAGGGTCGTCGTCGCTGC 62.609 60.000 16.94 0.00 36.96 5.25
18 19 0.591741 GATTAGGGTCGTCGTCGCTG 60.592 60.000 16.94 0.00 36.96 5.18
19 20 0.747283 AGATTAGGGTCGTCGTCGCT 60.747 55.000 13.02 13.02 36.96 4.93
20 21 0.940126 TAGATTAGGGTCGTCGTCGC 59.060 55.000 0.00 0.00 36.96 5.19
21 22 2.208431 ACTAGATTAGGGTCGTCGTCG 58.792 52.381 0.00 0.00 38.55 5.12
22 23 4.335037 AGAAACTAGATTAGGGTCGTCGTC 59.665 45.833 0.00 0.00 0.00 4.20
23 24 4.268359 AGAAACTAGATTAGGGTCGTCGT 58.732 43.478 0.00 0.00 0.00 4.34
24 25 4.897025 AGAAACTAGATTAGGGTCGTCG 57.103 45.455 0.00 0.00 0.00 5.12
25 26 8.992835 TTAAAAGAAACTAGATTAGGGTCGTC 57.007 34.615 0.00 0.00 0.00 4.20
26 27 8.591940 ACTTAAAAGAAACTAGATTAGGGTCGT 58.408 33.333 0.00 0.00 0.00 4.34
27 28 8.870879 CACTTAAAAGAAACTAGATTAGGGTCG 58.129 37.037 0.00 0.00 0.00 4.79
28 29 9.722184 ACACTTAAAAGAAACTAGATTAGGGTC 57.278 33.333 0.00 0.00 0.00 4.46
65 66 9.853555 CCAAGTTCAGCACATTAATATAAACAA 57.146 29.630 0.00 0.00 0.00 2.83
66 67 8.465999 CCCAAGTTCAGCACATTAATATAAACA 58.534 33.333 0.00 0.00 0.00 2.83
67 68 8.466798 ACCCAAGTTCAGCACATTAATATAAAC 58.533 33.333 0.00 0.00 0.00 2.01
68 69 8.588290 ACCCAAGTTCAGCACATTAATATAAA 57.412 30.769 0.00 0.00 0.00 1.40
69 70 9.688091 TTACCCAAGTTCAGCACATTAATATAA 57.312 29.630 0.00 0.00 0.00 0.98
70 71 9.688091 TTTACCCAAGTTCAGCACATTAATATA 57.312 29.630 0.00 0.00 0.00 0.86
71 72 8.588290 TTTACCCAAGTTCAGCACATTAATAT 57.412 30.769 0.00 0.00 0.00 1.28
72 73 7.668052 ACTTTACCCAAGTTCAGCACATTAATA 59.332 33.333 0.00 0.00 43.89 0.98
73 74 6.493458 ACTTTACCCAAGTTCAGCACATTAAT 59.507 34.615 0.00 0.00 43.89 1.40
74 75 5.830991 ACTTTACCCAAGTTCAGCACATTAA 59.169 36.000 0.00 0.00 43.89 1.40
75 76 5.240623 CACTTTACCCAAGTTCAGCACATTA 59.759 40.000 0.00 0.00 43.89 1.90
76 77 4.037923 CACTTTACCCAAGTTCAGCACATT 59.962 41.667 0.00 0.00 43.89 2.71
77 78 3.569701 CACTTTACCCAAGTTCAGCACAT 59.430 43.478 0.00 0.00 43.89 3.21
78 79 2.948979 CACTTTACCCAAGTTCAGCACA 59.051 45.455 0.00 0.00 43.89 4.57
79 80 2.293399 CCACTTTACCCAAGTTCAGCAC 59.707 50.000 0.00 0.00 43.89 4.40
80 81 2.173782 TCCACTTTACCCAAGTTCAGCA 59.826 45.455 0.00 0.00 43.89 4.41
81 82 2.858745 TCCACTTTACCCAAGTTCAGC 58.141 47.619 0.00 0.00 43.89 4.26
82 83 4.398319 ACATCCACTTTACCCAAGTTCAG 58.602 43.478 0.00 0.00 43.89 3.02
83 84 4.447138 ACATCCACTTTACCCAAGTTCA 57.553 40.909 0.00 0.00 43.89 3.18
84 85 5.784578 AAACATCCACTTTACCCAAGTTC 57.215 39.130 0.00 0.00 43.89 3.01
85 86 7.663043 TTAAAACATCCACTTTACCCAAGTT 57.337 32.000 0.00 0.00 43.89 2.66
87 88 7.666623 ACATTAAAACATCCACTTTACCCAAG 58.333 34.615 0.00 0.00 38.64 3.61
88 89 7.604657 ACATTAAAACATCCACTTTACCCAA 57.395 32.000 0.00 0.00 0.00 4.12
89 90 7.604657 AACATTAAAACATCCACTTTACCCA 57.395 32.000 0.00 0.00 0.00 4.51
138 139 5.242615 CCCCAAAAACCCAAATAAACATTGG 59.757 40.000 0.00 0.00 45.62 3.16
139 140 5.830457 ACCCCAAAAACCCAAATAAACATTG 59.170 36.000 0.00 0.00 0.00 2.82
140 141 6.019656 ACCCCAAAAACCCAAATAAACATT 57.980 33.333 0.00 0.00 0.00 2.71
141 142 5.654901 ACCCCAAAAACCCAAATAAACAT 57.345 34.783 0.00 0.00 0.00 2.71
142 143 5.452341 AACCCCAAAAACCCAAATAAACA 57.548 34.783 0.00 0.00 0.00 2.83
143 144 7.876936 TTAAACCCCAAAAACCCAAATAAAC 57.123 32.000 0.00 0.00 0.00 2.01
144 145 9.488762 AATTTAAACCCCAAAAACCCAAATAAA 57.511 25.926 0.00 0.00 0.00 1.40
145 146 9.132923 GAATTTAAACCCCAAAAACCCAAATAA 57.867 29.630 0.00 0.00 0.00 1.40
146 147 8.279361 TGAATTTAAACCCCAAAAACCCAAATA 58.721 29.630 0.00 0.00 0.00 1.40
147 148 7.068839 GTGAATTTAAACCCCAAAAACCCAAAT 59.931 33.333 0.00 0.00 0.00 2.32
148 149 6.377429 GTGAATTTAAACCCCAAAAACCCAAA 59.623 34.615 0.00 0.00 0.00 3.28
149 150 5.886474 GTGAATTTAAACCCCAAAAACCCAA 59.114 36.000 0.00 0.00 0.00 4.12
150 151 5.437946 GTGAATTTAAACCCCAAAAACCCA 58.562 37.500 0.00 0.00 0.00 4.51
151 152 4.512198 CGTGAATTTAAACCCCAAAAACCC 59.488 41.667 0.00 0.00 0.00 4.11
152 153 5.117584 ACGTGAATTTAAACCCCAAAAACC 58.882 37.500 0.00 0.00 0.00 3.27
153 154 5.234757 GGACGTGAATTTAAACCCCAAAAAC 59.765 40.000 0.00 0.00 0.00 2.43
154 155 5.105064 TGGACGTGAATTTAAACCCCAAAAA 60.105 36.000 0.00 0.00 0.00 1.94
155 156 4.404715 TGGACGTGAATTTAAACCCCAAAA 59.595 37.500 0.00 0.00 0.00 2.44
156 157 3.958798 TGGACGTGAATTTAAACCCCAAA 59.041 39.130 0.00 0.00 0.00 3.28
157 158 3.563223 TGGACGTGAATTTAAACCCCAA 58.437 40.909 0.00 0.00 0.00 4.12
158 159 3.225177 TGGACGTGAATTTAAACCCCA 57.775 42.857 0.00 0.00 0.00 4.96
159 160 5.900865 TTATGGACGTGAATTTAAACCCC 57.099 39.130 0.00 0.00 0.00 4.95
160 161 7.868922 AGTTTTTATGGACGTGAATTTAAACCC 59.131 33.333 0.00 0.00 0.00 4.11
161 162 8.696175 CAGTTTTTATGGACGTGAATTTAAACC 58.304 33.333 0.00 0.00 0.00 3.27
162 163 9.453325 TCAGTTTTTATGGACGTGAATTTAAAC 57.547 29.630 0.00 0.00 0.00 2.01
163 164 9.453325 GTCAGTTTTTATGGACGTGAATTTAAA 57.547 29.630 0.00 0.00 0.00 1.52
164 165 8.622157 TGTCAGTTTTTATGGACGTGAATTTAA 58.378 29.630 0.00 0.00 33.04 1.52
165 166 8.155821 TGTCAGTTTTTATGGACGTGAATTTA 57.844 30.769 0.00 0.00 33.04 1.40
166 167 7.033530 TGTCAGTTTTTATGGACGTGAATTT 57.966 32.000 0.00 0.00 33.04 1.82
167 168 6.262273 ACTGTCAGTTTTTATGGACGTGAATT 59.738 34.615 0.00 0.00 33.04 2.17
168 169 5.763204 ACTGTCAGTTTTTATGGACGTGAAT 59.237 36.000 0.00 0.00 33.04 2.57
169 170 5.120399 ACTGTCAGTTTTTATGGACGTGAA 58.880 37.500 0.00 0.00 33.04 3.18
170 171 4.699637 ACTGTCAGTTTTTATGGACGTGA 58.300 39.130 0.00 0.00 33.04 4.35
171 172 5.418310 AACTGTCAGTTTTTATGGACGTG 57.582 39.130 12.62 0.00 34.11 4.49
172 173 5.732247 GCAAACTGTCAGTTTTTATGGACGT 60.732 40.000 25.13 1.19 45.38 4.34
173 174 4.675114 GCAAACTGTCAGTTTTTATGGACG 59.325 41.667 25.13 13.97 45.38 4.79
174 175 4.675114 CGCAAACTGTCAGTTTTTATGGAC 59.325 41.667 25.13 10.86 45.38 4.02
175 176 4.261405 CCGCAAACTGTCAGTTTTTATGGA 60.261 41.667 25.13 0.00 45.38 3.41
176 177 3.980775 CCGCAAACTGTCAGTTTTTATGG 59.019 43.478 25.13 19.40 45.38 2.74
177 178 4.440758 CACCGCAAACTGTCAGTTTTTATG 59.559 41.667 25.13 16.99 45.38 1.90
178 179 4.606961 CACCGCAAACTGTCAGTTTTTAT 58.393 39.130 25.13 10.78 45.38 1.40
179 180 3.732471 GCACCGCAAACTGTCAGTTTTTA 60.732 43.478 25.13 0.00 45.38 1.52
180 181 2.874849 CACCGCAAACTGTCAGTTTTT 58.125 42.857 25.13 6.18 45.38 1.94
181 182 1.469079 GCACCGCAAACTGTCAGTTTT 60.469 47.619 25.13 10.77 45.38 2.43
183 184 1.727467 GCACCGCAAACTGTCAGTT 59.273 52.632 12.62 12.62 40.80 3.16
184 185 2.534019 CGCACCGCAAACTGTCAGT 61.534 57.895 0.00 0.00 0.00 3.41
185 186 1.568612 ATCGCACCGCAAACTGTCAG 61.569 55.000 0.00 0.00 0.00 3.51
186 187 1.565156 GATCGCACCGCAAACTGTCA 61.565 55.000 0.00 0.00 0.00 3.58
187 188 1.132640 GATCGCACCGCAAACTGTC 59.867 57.895 0.00 0.00 0.00 3.51
188 189 2.667318 CGATCGCACCGCAAACTGT 61.667 57.895 0.26 0.00 0.00 3.55
189 190 2.096406 CGATCGCACCGCAAACTG 59.904 61.111 0.26 0.00 0.00 3.16
190 191 3.118454 CCGATCGCACCGCAAACT 61.118 61.111 10.32 0.00 0.00 2.66
191 192 3.362851 GACCGATCGCACCGCAAAC 62.363 63.158 10.32 0.00 0.00 2.93
192 193 3.115892 GACCGATCGCACCGCAAA 61.116 61.111 10.32 0.00 0.00 3.68
197 198 3.186047 CAACGGACCGATCGCACC 61.186 66.667 23.38 13.60 0.00 5.01
198 199 3.186047 CCAACGGACCGATCGCAC 61.186 66.667 23.38 5.39 0.00 5.34
199 200 4.444838 CCCAACGGACCGATCGCA 62.445 66.667 23.38 0.00 0.00 5.10
211 212 4.322385 GTTGTCGGTGCGCCCAAC 62.322 66.667 18.61 18.61 33.90 3.77
216 217 4.147322 CATCGGTTGTCGGTGCGC 62.147 66.667 0.00 0.00 43.45 6.09
220 221 1.005394 GTGGTCATCGGTTGTCGGT 60.005 57.895 0.00 0.00 39.77 4.69
221 222 0.601576 TTGTGGTCATCGGTTGTCGG 60.602 55.000 0.00 0.00 39.77 4.79
222 223 0.790207 CTTGTGGTCATCGGTTGTCG 59.210 55.000 0.00 0.00 40.90 4.35
223 224 0.517316 GCTTGTGGTCATCGGTTGTC 59.483 55.000 0.00 0.00 0.00 3.18
224 225 1.227999 CGCTTGTGGTCATCGGTTGT 61.228 55.000 0.00 0.00 0.00 3.32
225 226 0.948623 TCGCTTGTGGTCATCGGTTG 60.949 55.000 0.00 0.00 0.00 3.77
226 227 0.250124 TTCGCTTGTGGTCATCGGTT 60.250 50.000 0.00 0.00 0.00 4.44
227 228 0.949105 GTTCGCTTGTGGTCATCGGT 60.949 55.000 0.00 0.00 0.00 4.69
228 229 1.787847 GTTCGCTTGTGGTCATCGG 59.212 57.895 0.00 0.00 0.00 4.18
229 230 1.006825 TCGTTCGCTTGTGGTCATCG 61.007 55.000 0.00 0.00 0.00 3.84
230 231 0.438830 GTCGTTCGCTTGTGGTCATC 59.561 55.000 0.00 0.00 0.00 2.92
231 232 0.949105 GGTCGTTCGCTTGTGGTCAT 60.949 55.000 0.00 0.00 0.00 3.06
232 233 1.593209 GGTCGTTCGCTTGTGGTCA 60.593 57.895 0.00 0.00 0.00 4.02
233 234 2.654912 CGGTCGTTCGCTTGTGGTC 61.655 63.158 0.00 0.00 0.00 4.02
234 235 2.660552 CGGTCGTTCGCTTGTGGT 60.661 61.111 0.00 0.00 0.00 4.16
235 236 2.660552 ACGGTCGTTCGCTTGTGG 60.661 61.111 0.00 0.00 0.00 4.17
236 237 2.142418 GACACGGTCGTTCGCTTGTG 62.142 60.000 0.00 8.20 0.00 3.33
237 238 1.947642 GACACGGTCGTTCGCTTGT 60.948 57.895 0.00 0.00 0.00 3.16
238 239 2.654912 GGACACGGTCGTTCGCTTG 61.655 63.158 0.00 0.00 32.65 4.01
239 240 2.355481 GGACACGGTCGTTCGCTT 60.355 61.111 0.00 0.00 32.65 4.68
240 241 4.695231 CGGACACGGTCGTTCGCT 62.695 66.667 0.00 0.00 36.18 4.93
241 242 4.988486 ACGGACACGGTCGTTCGC 62.988 66.667 10.09 0.00 46.48 4.70
242 243 1.481819 AAAACGGACACGGTCGTTCG 61.482 55.000 6.57 7.88 46.91 3.95
243 244 0.230515 GAAAACGGACACGGTCGTTC 59.769 55.000 6.57 0.00 46.91 3.95
245 246 0.872881 CAGAAAACGGACACGGTCGT 60.873 55.000 0.00 0.00 40.63 4.34
246 247 1.850640 CAGAAAACGGACACGGTCG 59.149 57.895 0.00 0.00 40.63 4.79
247 248 1.568025 GCAGAAAACGGACACGGTC 59.432 57.895 0.00 0.00 40.63 4.79
248 249 1.890510 GGCAGAAAACGGACACGGT 60.891 57.895 0.00 0.00 45.80 4.83
249 250 1.566018 GAGGCAGAAAACGGACACGG 61.566 60.000 0.00 0.00 46.48 4.94
251 252 1.002792 GTTGAGGCAGAAAACGGACAC 60.003 52.381 0.00 0.00 0.00 3.67
252 253 1.305201 GTTGAGGCAGAAAACGGACA 58.695 50.000 0.00 0.00 0.00 4.02
253 254 0.591659 GGTTGAGGCAGAAAACGGAC 59.408 55.000 0.00 0.00 0.00 4.79
254 255 0.882927 CGGTTGAGGCAGAAAACGGA 60.883 55.000 0.00 0.00 32.91 4.69
255 256 1.574428 CGGTTGAGGCAGAAAACGG 59.426 57.895 0.00 0.00 32.91 4.44
256 257 0.882927 TCCGGTTGAGGCAGAAAACG 60.883 55.000 0.00 0.00 36.26 3.60
257 258 0.591659 GTCCGGTTGAGGCAGAAAAC 59.408 55.000 0.00 0.00 0.00 2.43
258 259 0.181587 TGTCCGGTTGAGGCAGAAAA 59.818 50.000 0.00 0.00 0.00 2.29
259 260 0.181587 TTGTCCGGTTGAGGCAGAAA 59.818 50.000 0.00 0.00 0.00 2.52
260 261 0.181587 TTTGTCCGGTTGAGGCAGAA 59.818 50.000 0.00 0.00 0.00 3.02
261 262 0.181587 TTTTGTCCGGTTGAGGCAGA 59.818 50.000 0.00 0.00 0.00 4.26
262 263 1.028905 TTTTTGTCCGGTTGAGGCAG 58.971 50.000 0.00 0.00 0.00 4.85
263 264 3.192799 TTTTTGTCCGGTTGAGGCA 57.807 47.368 0.00 0.00 0.00 4.75
278 279 4.331717 ACGACGTCTGTTTCATCTGTTTTT 59.668 37.500 14.70 0.00 0.00 1.94
279 280 3.869246 ACGACGTCTGTTTCATCTGTTTT 59.131 39.130 14.70 0.00 0.00 2.43
280 281 3.454375 ACGACGTCTGTTTCATCTGTTT 58.546 40.909 14.70 0.00 0.00 2.83
281 282 3.093717 ACGACGTCTGTTTCATCTGTT 57.906 42.857 14.70 0.00 0.00 3.16
282 283 2.795175 ACGACGTCTGTTTCATCTGT 57.205 45.000 14.70 0.00 0.00 3.41
283 284 3.362986 CCAAACGACGTCTGTTTCATCTG 60.363 47.826 25.09 18.01 37.44 2.90
284 285 2.800544 CCAAACGACGTCTGTTTCATCT 59.199 45.455 25.09 10.37 37.44 2.90
285 286 2.096417 CCCAAACGACGTCTGTTTCATC 60.096 50.000 25.09 0.00 37.44 2.92
286 287 1.871039 CCCAAACGACGTCTGTTTCAT 59.129 47.619 25.09 10.91 37.44 2.57
287 288 1.292061 CCCAAACGACGTCTGTTTCA 58.708 50.000 25.09 0.00 37.44 2.69
288 289 1.259770 GACCCAAACGACGTCTGTTTC 59.740 52.381 25.09 15.89 37.44 2.78
289 290 1.292992 GACCCAAACGACGTCTGTTT 58.707 50.000 23.39 23.39 40.01 2.83
290 291 0.872881 CGACCCAAACGACGTCTGTT 60.873 55.000 14.70 15.73 0.00 3.16
291 292 1.299620 CGACCCAAACGACGTCTGT 60.300 57.895 14.70 10.46 0.00 3.41
292 293 1.299620 ACGACCCAAACGACGTCTG 60.300 57.895 14.70 9.79 33.80 3.51
293 294 1.299620 CACGACCCAAACGACGTCT 60.300 57.895 14.70 0.00 36.86 4.18
294 295 2.935446 GCACGACCCAAACGACGTC 61.935 63.158 5.18 5.18 36.86 4.34
295 296 2.911332 AAGCACGACCCAAACGACGT 62.911 55.000 0.00 0.00 39.53 4.34
296 297 1.768112 AAAGCACGACCCAAACGACG 61.768 55.000 0.00 0.00 34.70 5.12
297 298 1.193874 CTAAAGCACGACCCAAACGAC 59.806 52.381 0.00 0.00 34.70 4.34
298 299 1.504359 CTAAAGCACGACCCAAACGA 58.496 50.000 0.00 0.00 34.70 3.85
299 300 0.515564 CCTAAAGCACGACCCAAACG 59.484 55.000 0.00 0.00 0.00 3.60
300 301 0.879090 CCCTAAAGCACGACCCAAAC 59.121 55.000 0.00 0.00 0.00 2.93
301 302 0.475044 ACCCTAAAGCACGACCCAAA 59.525 50.000 0.00 0.00 0.00 3.28
302 303 0.475044 AACCCTAAAGCACGACCCAA 59.525 50.000 0.00 0.00 0.00 4.12
303 304 0.250553 CAACCCTAAAGCACGACCCA 60.251 55.000 0.00 0.00 0.00 4.51
304 305 0.958876 CCAACCCTAAAGCACGACCC 60.959 60.000 0.00 0.00 0.00 4.46
305 306 1.583495 GCCAACCCTAAAGCACGACC 61.583 60.000 0.00 0.00 0.00 4.79
306 307 1.583495 GGCCAACCCTAAAGCACGAC 61.583 60.000 0.00 0.00 0.00 4.34
307 308 1.302993 GGCCAACCCTAAAGCACGA 60.303 57.895 0.00 0.00 0.00 4.35
308 309 1.175983 TTGGCCAACCCTAAAGCACG 61.176 55.000 16.05 0.00 33.59 5.34
309 310 0.603065 CTTGGCCAACCCTAAAGCAC 59.397 55.000 16.05 0.00 33.59 4.40
310 311 0.541764 CCTTGGCCAACCCTAAAGCA 60.542 55.000 16.05 0.00 33.59 3.91
311 312 1.257750 CCCTTGGCCAACCCTAAAGC 61.258 60.000 16.05 0.00 33.59 3.51
312 313 1.257750 GCCCTTGGCCAACCCTAAAG 61.258 60.000 16.05 2.11 44.06 1.85
313 314 1.229051 GCCCTTGGCCAACCCTAAA 60.229 57.895 16.05 0.00 44.06 1.85
314 315 2.443324 GCCCTTGGCCAACCCTAA 59.557 61.111 16.05 0.00 44.06 2.69
324 325 1.851304 ACCATTGTACATGCCCTTGG 58.149 50.000 0.00 0.53 0.00 3.61
325 326 5.596836 ATTAACCATTGTACATGCCCTTG 57.403 39.130 0.00 0.00 0.00 3.61
326 327 7.122715 TCTTATTAACCATTGTACATGCCCTT 58.877 34.615 0.00 0.00 0.00 3.95
327 328 6.668645 TCTTATTAACCATTGTACATGCCCT 58.331 36.000 0.00 0.00 0.00 5.19
328 329 6.952773 TCTTATTAACCATTGTACATGCCC 57.047 37.500 0.00 0.00 0.00 5.36
329 330 9.284968 ACTATCTTATTAACCATTGTACATGCC 57.715 33.333 0.00 0.00 0.00 4.40
347 348 9.251440 TGCAAGACTTAAGGTAAGACTATCTTA 57.749 33.333 7.53 0.00 39.28 2.10
348 349 8.135382 TGCAAGACTTAAGGTAAGACTATCTT 57.865 34.615 7.53 0.71 39.28 2.40
349 350 7.719871 TGCAAGACTTAAGGTAAGACTATCT 57.280 36.000 7.53 0.00 39.28 1.98
350 351 7.982354 ACATGCAAGACTTAAGGTAAGACTATC 59.018 37.037 7.53 0.00 39.28 2.08
351 352 7.852263 ACATGCAAGACTTAAGGTAAGACTAT 58.148 34.615 7.53 0.00 39.28 2.12
352 353 7.241042 ACATGCAAGACTTAAGGTAAGACTA 57.759 36.000 7.53 0.00 39.28 2.59
353 354 6.115448 ACATGCAAGACTTAAGGTAAGACT 57.885 37.500 7.53 0.00 41.33 3.24
354 355 7.900782 TTACATGCAAGACTTAAGGTAAGAC 57.099 36.000 7.53 0.00 39.09 3.01
355 356 9.515226 AAATTACATGCAAGACTTAAGGTAAGA 57.485 29.630 7.53 0.00 39.09 2.10
359 360 9.167311 CTCTAAATTACATGCAAGACTTAAGGT 57.833 33.333 7.53 0.00 0.00 3.50
360 361 9.167311 ACTCTAAATTACATGCAAGACTTAAGG 57.833 33.333 7.53 0.00 0.00 2.69
363 364 8.450964 GCAACTCTAAATTACATGCAAGACTTA 58.549 33.333 0.00 0.00 32.80 2.24
364 365 7.040478 TGCAACTCTAAATTACATGCAAGACTT 60.040 33.333 0.00 0.00 39.15 3.01
365 366 6.430925 TGCAACTCTAAATTACATGCAAGACT 59.569 34.615 0.00 0.00 39.15 3.24
366 367 6.611381 TGCAACTCTAAATTACATGCAAGAC 58.389 36.000 0.00 0.00 39.15 3.01
367 368 6.816134 TGCAACTCTAAATTACATGCAAGA 57.184 33.333 0.00 0.00 39.15 3.02
369 370 8.654230 TTTTTGCAACTCTAAATTACATGCAA 57.346 26.923 0.00 6.21 46.79 4.08
398 399 9.905713 AGGCTAAAAGATGATTAATTGTAGACA 57.094 29.630 0.00 0.00 0.00 3.41
449 450 9.407380 AGCACAATATGTCTCACCATATTTTTA 57.593 29.630 4.17 0.00 42.54 1.52
450 451 8.297470 AGCACAATATGTCTCACCATATTTTT 57.703 30.769 4.17 0.00 42.54 1.94
451 452 7.886629 AGCACAATATGTCTCACCATATTTT 57.113 32.000 4.17 0.00 42.54 1.82
452 453 8.978874 TTAGCACAATATGTCTCACCATATTT 57.021 30.769 4.17 0.00 42.54 1.40
453 454 8.432013 TCTTAGCACAATATGTCTCACCATATT 58.568 33.333 0.00 0.00 44.78 1.28
454 455 7.966812 TCTTAGCACAATATGTCTCACCATAT 58.033 34.615 0.00 0.00 39.20 1.78
455 456 7.287696 TCTCTTAGCACAATATGTCTCACCATA 59.712 37.037 0.00 0.00 0.00 2.74
456 457 6.098838 TCTCTTAGCACAATATGTCTCACCAT 59.901 38.462 0.00 0.00 0.00 3.55
457 458 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
458 459 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
459 460 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
460 461 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
461 462 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
462 463 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
463 464 8.087136 TGAGATGATCTCTTAGCACAATATGTC 58.913 37.037 21.83 0.00 43.73 3.06
464 465 7.960262 TGAGATGATCTCTTAGCACAATATGT 58.040 34.615 21.83 0.00 43.73 2.29
465 466 8.874816 CATGAGATGATCTCTTAGCACAATATG 58.125 37.037 21.83 10.02 43.73 1.78
466 467 8.595421 ACATGAGATGATCTCTTAGCACAATAT 58.405 33.333 21.83 1.92 43.73 1.28
467 468 7.960262 ACATGAGATGATCTCTTAGCACAATA 58.040 34.615 21.83 0.00 43.73 1.90
468 469 6.828788 ACATGAGATGATCTCTTAGCACAAT 58.171 36.000 21.83 3.27 43.73 2.71
469 470 6.231258 ACATGAGATGATCTCTTAGCACAA 57.769 37.500 21.83 0.95 43.73 3.33
470 471 5.866159 ACATGAGATGATCTCTTAGCACA 57.134 39.130 21.83 2.32 43.73 4.57
471 472 7.495279 AGAAAACATGAGATGATCTCTTAGCAC 59.505 37.037 21.83 9.16 43.73 4.40
472 473 7.563020 AGAAAACATGAGATGATCTCTTAGCA 58.437 34.615 21.83 3.75 43.73 3.49
473 474 8.436046 AAGAAAACATGAGATGATCTCTTAGC 57.564 34.615 21.83 6.56 43.73 3.09
506 507 9.836864 AAATCATAAGAAAAGGCTTGTCTTTTT 57.163 25.926 31.76 23.35 44.21 1.94
507 508 9.481340 GAAATCATAAGAAAAGGCTTGTCTTTT 57.519 29.630 31.76 23.28 46.07 2.27
508 509 8.864087 AGAAATCATAAGAAAAGGCTTGTCTTT 58.136 29.630 31.76 19.05 38.48 2.52
509 510 8.414629 AGAAATCATAAGAAAAGGCTTGTCTT 57.585 30.769 30.04 30.04 35.77 3.01
510 511 8.414629 AAGAAATCATAAGAAAAGGCTTGTCT 57.585 30.769 14.33 14.33 0.00 3.41
511 512 9.133627 GAAAGAAATCATAAGAAAAGGCTTGTC 57.866 33.333 9.51 9.51 0.00 3.18
512 513 8.864087 AGAAAGAAATCATAAGAAAAGGCTTGT 58.136 29.630 0.00 0.00 0.00 3.16
513 514 9.351570 GAGAAAGAAATCATAAGAAAAGGCTTG 57.648 33.333 0.00 0.00 0.00 4.01
514 515 9.082313 TGAGAAAGAAATCATAAGAAAAGGCTT 57.918 29.630 0.00 0.00 0.00 4.35
515 516 8.641498 TGAGAAAGAAATCATAAGAAAAGGCT 57.359 30.769 0.00 0.00 0.00 4.58
516 517 9.513727 GATGAGAAAGAAATCATAAGAAAAGGC 57.486 33.333 0.00 0.00 36.30 4.35
532 533 9.993454 CCATAAATGATGAGTAGATGAGAAAGA 57.007 33.333 0.00 0.00 37.82 2.52
533 534 9.775854 ACCATAAATGATGAGTAGATGAGAAAG 57.224 33.333 0.00 0.00 37.82 2.62
555 556 9.479549 ACAATGGTTTGATCTTAGAAATACCAT 57.520 29.630 13.53 13.53 44.61 3.55
556 557 8.877864 ACAATGGTTTGATCTTAGAAATACCA 57.122 30.769 11.00 11.00 38.64 3.25
563 564 9.056005 GCATATGTACAATGGTTTGATCTTAGA 57.944 33.333 0.00 0.00 36.64 2.10
564 565 8.292448 GGCATATGTACAATGGTTTGATCTTAG 58.708 37.037 0.00 0.00 36.64 2.18
565 566 7.230510 GGGCATATGTACAATGGTTTGATCTTA 59.769 37.037 0.00 0.00 36.64 2.10
566 567 6.040842 GGGCATATGTACAATGGTTTGATCTT 59.959 38.462 0.00 0.00 36.64 2.40
567 568 5.536161 GGGCATATGTACAATGGTTTGATCT 59.464 40.000 0.00 0.00 36.64 2.75
568 569 5.536161 AGGGCATATGTACAATGGTTTGATC 59.464 40.000 0.00 0.00 36.64 2.92
569 570 5.457686 AGGGCATATGTACAATGGTTTGAT 58.542 37.500 0.00 0.00 36.64 2.57
570 571 4.865905 AGGGCATATGTACAATGGTTTGA 58.134 39.130 0.00 0.00 36.64 2.69
571 572 6.707440 TTAGGGCATATGTACAATGGTTTG 57.293 37.500 0.00 0.00 38.86 2.93
572 573 7.912778 AATTAGGGCATATGTACAATGGTTT 57.087 32.000 0.00 0.00 0.00 3.27
573 574 7.912778 AAATTAGGGCATATGTACAATGGTT 57.087 32.000 0.00 0.00 0.00 3.67
574 575 7.686615 GCAAAATTAGGGCATATGTACAATGGT 60.687 37.037 0.00 0.00 0.00 3.55
575 576 6.646240 GCAAAATTAGGGCATATGTACAATGG 59.354 38.462 0.00 0.00 0.00 3.16
576 577 7.436118 AGCAAAATTAGGGCATATGTACAATG 58.564 34.615 0.00 6.65 0.00 2.82
577 578 7.601705 AGCAAAATTAGGGCATATGTACAAT 57.398 32.000 0.00 0.00 0.00 2.71
578 579 7.123397 TCAAGCAAAATTAGGGCATATGTACAA 59.877 33.333 0.00 0.00 0.00 2.41
579 580 6.605194 TCAAGCAAAATTAGGGCATATGTACA 59.395 34.615 4.29 0.00 0.00 2.90
580 581 7.038154 TCAAGCAAAATTAGGGCATATGTAC 57.962 36.000 4.29 0.00 0.00 2.90
581 582 7.838079 ATCAAGCAAAATTAGGGCATATGTA 57.162 32.000 4.29 0.00 0.00 2.29
582 583 6.736110 ATCAAGCAAAATTAGGGCATATGT 57.264 33.333 4.29 0.00 0.00 2.29
583 584 7.170320 GTGAATCAAGCAAAATTAGGGCATATG 59.830 37.037 0.00 0.00 0.00 1.78
584 585 7.070322 AGTGAATCAAGCAAAATTAGGGCATAT 59.930 33.333 0.00 0.00 0.00 1.78
585 586 6.380846 AGTGAATCAAGCAAAATTAGGGCATA 59.619 34.615 0.00 0.00 0.00 3.14
586 587 5.188359 AGTGAATCAAGCAAAATTAGGGCAT 59.812 36.000 0.00 0.00 0.00 4.40
587 588 4.527816 AGTGAATCAAGCAAAATTAGGGCA 59.472 37.500 0.00 0.00 0.00 5.36
588 589 4.866486 CAGTGAATCAAGCAAAATTAGGGC 59.134 41.667 0.00 0.00 0.00 5.19
589 590 4.866486 GCAGTGAATCAAGCAAAATTAGGG 59.134 41.667 0.00 0.00 0.00 3.53
590 591 4.560035 CGCAGTGAATCAAGCAAAATTAGG 59.440 41.667 9.14 0.00 0.00 2.69
591 592 4.030977 GCGCAGTGAATCAAGCAAAATTAG 59.969 41.667 0.30 0.00 0.00 1.73
592 593 3.919804 GCGCAGTGAATCAAGCAAAATTA 59.080 39.130 0.30 0.00 0.00 1.40
593 594 2.733026 GCGCAGTGAATCAAGCAAAATT 59.267 40.909 0.30 0.00 0.00 1.82
594 595 2.331194 GCGCAGTGAATCAAGCAAAAT 58.669 42.857 0.30 0.00 0.00 1.82
595 596 1.602668 GGCGCAGTGAATCAAGCAAAA 60.603 47.619 10.83 0.00 0.00 2.44
607 608 3.200593 GGCTGAGATGGCGCAGTG 61.201 66.667 10.83 0.00 42.98 3.66
687 689 2.937486 GGAACCGCGCGTTGTTTA 59.063 55.556 29.95 0.00 33.74 2.01
912 914 2.187946 CGAGGTGGTCAGATGGGC 59.812 66.667 0.00 0.00 0.00 5.36
914 916 1.153489 CAGCGAGGTGGTCAGATGG 60.153 63.158 0.00 0.00 0.00 3.51
982 987 0.329596 ATCCCCTTTCGAAGCTGCTT 59.670 50.000 15.92 15.92 0.00 3.91
1207 1218 8.071967 TCATCTCGATGTCAAAATAAATCATGC 58.928 33.333 6.78 0.00 39.72 4.06
1272 1286 4.101790 CAACATCCACACGGCGCC 62.102 66.667 19.07 19.07 0.00 6.53
1284 1298 0.107508 CGCCTCCAGATCCACAACAT 60.108 55.000 0.00 0.00 0.00 2.71
1315 1329 3.026630 TCAGCAGTAAACTCACCTTCG 57.973 47.619 0.00 0.00 0.00 3.79
1377 1391 7.551262 TCAATATTCTGCGGTAACTACAAACAT 59.449 33.333 0.00 0.00 0.00 2.71
1378 1392 6.874664 TCAATATTCTGCGGTAACTACAAACA 59.125 34.615 0.00 0.00 0.00 2.83
1382 1397 6.216801 ACTCAATATTCTGCGGTAACTACA 57.783 37.500 0.00 0.00 0.00 2.74
1444 1459 3.255888 AGATAGAAGTATGCGCCAATCGA 59.744 43.478 4.18 0.00 41.67 3.59
1458 1473 8.669243 GTTTCACACTTATCCCAAAGATAGAAG 58.331 37.037 0.00 0.00 38.69 2.85
1463 1478 6.542821 TCAGTTTCACACTTATCCCAAAGAT 58.457 36.000 0.00 0.00 34.24 2.40
1520 1535 3.675698 CAGAGTACTCTTGGAACGAAAGC 59.324 47.826 23.01 0.00 37.98 3.51
1521 1536 4.872664 ACAGAGTACTCTTGGAACGAAAG 58.127 43.478 23.01 9.96 37.98 2.62
1522 1537 4.931661 ACAGAGTACTCTTGGAACGAAA 57.068 40.909 23.01 0.00 37.98 3.46
1526 1541 9.141400 CAATAAACTACAGAGTACTCTTGGAAC 57.859 37.037 23.01 0.00 37.98 3.62
1527 1542 8.867097 ACAATAAACTACAGAGTACTCTTGGAA 58.133 33.333 23.01 7.71 37.98 3.53
1528 1543 8.418597 ACAATAAACTACAGAGTACTCTTGGA 57.581 34.615 23.01 13.68 37.98 3.53
1626 1641 0.949397 CATGGAATCAGATGCCACCG 59.051 55.000 13.00 3.24 33.93 4.94
1629 1644 3.448301 GGAAAACATGGAATCAGATGCCA 59.552 43.478 13.11 13.11 35.91 4.92
1722 1785 4.202472 GGAGAAAGGGATATAACAGGTGGG 60.202 50.000 0.00 0.00 0.00 4.61
1963 2026 5.083122 TGCCCACCTGAATATTCTGAAAAA 58.917 37.500 20.46 0.00 0.00 1.94
2014 2077 7.370383 TCTGCTCAACAAATAAATGGAAAGAC 58.630 34.615 0.00 0.00 0.00 3.01
2024 2202 5.506649 GGTTCCGTTTCTGCTCAACAAATAA 60.507 40.000 0.00 0.00 0.00 1.40
2042 2220 1.202651 AGTTTCAGGTCACTGGTTCCG 60.203 52.381 0.00 0.00 44.99 4.30
2055 2233 7.395190 TGTTGGATATGGATCAAAGTTTCAG 57.605 36.000 0.00 0.00 33.27 3.02
2084 2262 4.499183 AGCATTAGTAGTGCAGTCTTCAC 58.501 43.478 18.61 0.00 44.87 3.18
2089 2267 6.740110 AGTATGTAGCATTAGTAGTGCAGTC 58.260 40.000 18.61 9.31 44.87 3.51
2133 2311 9.914923 GTTTCAAAACAAAATTGAAGGTACATC 57.085 29.630 0.00 0.00 44.83 3.06
2163 2341 7.451255 TCACAATTCAACCAGAAATAAGGATGT 59.549 33.333 0.00 0.00 40.22 3.06
2204 2382 0.880718 GCCTAAGACATAGCCCACGC 60.881 60.000 0.00 0.00 0.00 5.34
2206 2384 1.762957 TGAGCCTAAGACATAGCCCAC 59.237 52.381 0.00 0.00 0.00 4.61
2218 2396 5.013704 TGAATGTTAGAAAGGGTGAGCCTAA 59.986 40.000 2.47 0.00 34.45 2.69
2238 2416 0.235665 CGTGCTGTTTCGCTGTGAAT 59.764 50.000 4.26 0.00 36.22 2.57
2274 2452 0.038021 TGGAGCAGCATTGGCACTTA 59.962 50.000 0.00 0.00 44.61 2.24
2317 2495 1.421268 TCCATCTTGTTCAGGCACACT 59.579 47.619 0.00 0.00 0.00 3.55
2450 2628 4.180496 GAGGTAAACTCGGCGGTG 57.820 61.111 7.21 2.81 36.29 4.94
2553 2736 2.266554 CAGCGGCTCTAACTTCTTGAG 58.733 52.381 0.00 0.00 0.00 3.02
2612 2795 1.502231 CGACCTGTTCCAGAACACAG 58.498 55.000 9.12 6.68 45.42 3.66
2616 2799 0.391597 TCACCGACCTGTTCCAGAAC 59.608 55.000 3.52 3.52 41.50 3.01
2657 2842 0.320334 ATCGATGCACACAACCGACA 60.320 50.000 0.00 0.00 31.85 4.35
2690 2875 4.661709 AGAAGAAAACTAAGGTGGTACCCA 59.338 41.667 10.07 0.00 39.75 4.51
2770 2957 4.319177 ACTATTGCACCAGACTTCAGAAC 58.681 43.478 0.81 0.00 0.00 3.01
2780 2967 2.423538 GCCAAACCTACTATTGCACCAG 59.576 50.000 0.00 0.00 0.00 4.00
2812 2999 3.019564 CTCCCAAGAAAACTATGCCAGG 58.980 50.000 0.00 0.00 0.00 4.45
2821 3008 3.609409 GCGTCATTGTCTCCCAAGAAAAC 60.609 47.826 0.00 0.00 36.25 2.43
2880 3067 0.035152 ATCCGAAACCTGCATGCTGA 60.035 50.000 24.53 1.45 0.00 4.26
2949 3136 0.599991 AGCTGTTGCGACATCGACAA 60.600 50.000 7.38 6.29 45.42 3.18
2953 3140 2.780643 CCAGCTGTTGCGACATCG 59.219 61.111 13.81 0.00 45.42 3.84
2968 3155 3.330701 ACTTCAGAGAATTGGGTTAGCCA 59.669 43.478 0.00 0.00 36.17 4.75
3010 3197 5.077564 GGGTAAGGGTTCAGTCATTTTCTT 58.922 41.667 0.00 0.00 0.00 2.52
3074 3261 4.216472 CCCGAGTCGATAAGATCAGATCAA 59.784 45.833 15.64 0.67 0.00 2.57
3086 3273 3.120105 CTGCAGCCCGAGTCGATA 58.880 61.111 15.64 0.00 0.00 2.92
3099 3286 0.598942 TTCGTCAAGTTAGCGCTGCA 60.599 50.000 22.90 3.00 0.00 4.41
3179 3397 6.948353 TCTCTGAAAGATGTTTCGTCAAAAG 58.052 36.000 10.43 2.06 45.62 2.27
3180 3398 6.918892 TCTCTGAAAGATGTTTCGTCAAAA 57.081 33.333 10.43 0.00 45.62 2.44
3181 3399 6.511767 GCTTCTCTGAAAGATGTTTCGTCAAA 60.512 38.462 10.43 2.85 45.62 2.69
3281 3500 3.295800 CCCCCGGATAGCGATACC 58.704 66.667 0.73 0.00 0.00 2.73
3348 3569 2.757894 TCCTTGCTTGGGGTAAAACA 57.242 45.000 0.00 0.00 0.00 2.83
3349 3570 3.161866 TGATCCTTGCTTGGGGTAAAAC 58.838 45.455 0.00 0.00 0.00 2.43
3353 3574 2.204463 TGATGATCCTTGCTTGGGGTA 58.796 47.619 0.00 0.00 0.00 3.69
3361 3582 1.667724 CGTGGACTTGATGATCCTTGC 59.332 52.381 0.00 0.00 35.86 4.01
3362 3583 3.118992 TCTCGTGGACTTGATGATCCTTG 60.119 47.826 0.00 0.00 35.86 3.61
3370 3591 1.153745 GCGCTCTCGTGGACTTGAT 60.154 57.895 0.00 0.00 38.14 2.57
3450 3671 1.066929 GGTTCCATTCAACACATGGGC 60.067 52.381 0.00 0.00 41.58 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.