Multiple sequence alignment - TraesCS7B01G152500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G152500 chr7B 100.000 2547 0 0 1 2547 202776344 202778890 0.000000e+00 4704.0
1 TraesCS7B01G152500 chr2B 99.293 1980 11 2 571 2547 776222960 776224939 0.000000e+00 3576.0
2 TraesCS7B01G152500 chr2B 99.192 1981 13 2 570 2547 781094238 781096218 0.000000e+00 3567.0
3 TraesCS7B01G152500 chr3A 99.047 1993 15 3 557 2547 54951904 54953894 0.000000e+00 3572.0
4 TraesCS7B01G152500 chr3A 100.000 33 0 0 51 83 8176541 8176509 7.610000e-06 62.1
5 TraesCS7B01G152500 chr3B 99.242 1979 13 1 571 2547 702857656 702855678 0.000000e+00 3570.0
6 TraesCS7B01G152500 chr3B 85.714 70 4 5 48 114 829380697 829380763 4.550000e-08 69.4
7 TraesCS7B01G152500 chr7A 99.192 1979 13 2 572 2547 39015367 39017345 0.000000e+00 3563.0
8 TraesCS7B01G152500 chr7A 99.092 1983 15 2 568 2547 332474958 332472976 0.000000e+00 3559.0
9 TraesCS7B01G152500 chrUn 99.044 1988 13 3 564 2547 175762104 175764089 0.000000e+00 3561.0
10 TraesCS7B01G152500 chr6A 99.044 1988 14 3 564 2547 616131287 616133273 0.000000e+00 3561.0
11 TraesCS7B01G152500 chr4B 99.142 1982 12 3 570 2547 368430370 368428390 0.000000e+00 3561.0
12 TraesCS7B01G152500 chr7D 89.145 304 23 5 230 533 231261141 231261434 1.110000e-98 370.0
13 TraesCS7B01G152500 chr7D 85.870 92 12 1 2 93 393115553 393115463 2.090000e-16 97.1
14 TraesCS7B01G152500 chr7D 80.488 82 12 4 47 126 467434438 467434517 2.740000e-05 60.2
15 TraesCS7B01G152500 chr1D 80.000 100 14 6 3 100 374324625 374324530 4.550000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G152500 chr7B 202776344 202778890 2546 False 4704 4704 100.000 1 2547 1 chr7B.!!$F1 2546
1 TraesCS7B01G152500 chr2B 776222960 776224939 1979 False 3576 3576 99.293 571 2547 1 chr2B.!!$F1 1976
2 TraesCS7B01G152500 chr2B 781094238 781096218 1980 False 3567 3567 99.192 570 2547 1 chr2B.!!$F2 1977
3 TraesCS7B01G152500 chr3A 54951904 54953894 1990 False 3572 3572 99.047 557 2547 1 chr3A.!!$F1 1990
4 TraesCS7B01G152500 chr3B 702855678 702857656 1978 True 3570 3570 99.242 571 2547 1 chr3B.!!$R1 1976
5 TraesCS7B01G152500 chr7A 39015367 39017345 1978 False 3563 3563 99.192 572 2547 1 chr7A.!!$F1 1975
6 TraesCS7B01G152500 chr7A 332472976 332474958 1982 True 3559 3559 99.092 568 2547 1 chr7A.!!$R1 1979
7 TraesCS7B01G152500 chrUn 175762104 175764089 1985 False 3561 3561 99.044 564 2547 1 chrUn.!!$F1 1983
8 TraesCS7B01G152500 chr6A 616131287 616133273 1986 False 3561 3561 99.044 564 2547 1 chr6A.!!$F1 1983
9 TraesCS7B01G152500 chr4B 368428390 368430370 1980 True 3561 3561 99.142 570 2547 1 chr4B.!!$R1 1977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 481 0.030705 AGGGAGCTAGGGCATCTTCA 60.031 55.0 0.0 0.0 41.7 3.02 F
494 495 0.105224 TCTTCAACGCCGACCTTCAA 59.895 50.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 1383 0.319383 CTCTGTCAGTGCGTGCTTCT 60.319 55.0 0.0 0.0 0.0 2.85 R
2244 2249 6.695624 TGTATACCTTCTTTCCCTACCCATA 58.304 40.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 7.741027 ATGATCTAAAATACGAGAGGTACGA 57.259 36.000 0.00 0.00 32.95 3.43
105 106 7.187244 TGATCTAAAATACGAGAGGTACGAG 57.813 40.000 0.00 0.00 32.95 4.18
106 107 6.765036 TGATCTAAAATACGAGAGGTACGAGT 59.235 38.462 0.00 0.00 32.95 4.18
107 108 7.928167 TGATCTAAAATACGAGAGGTACGAGTA 59.072 37.037 0.00 0.00 32.95 2.59
108 109 8.668510 ATCTAAAATACGAGAGGTACGAGTAA 57.331 34.615 0.00 0.00 32.95 2.24
109 110 8.492673 TCTAAAATACGAGAGGTACGAGTAAA 57.507 34.615 0.00 0.00 32.95 2.01
110 111 8.391106 TCTAAAATACGAGAGGTACGAGTAAAC 58.609 37.037 0.00 0.00 32.95 2.01
111 112 5.491635 AATACGAGAGGTACGAGTAAACC 57.508 43.478 0.00 0.00 32.95 3.27
112 113 2.783135 ACGAGAGGTACGAGTAAACCA 58.217 47.619 0.00 0.00 38.30 3.67
113 114 3.350833 ACGAGAGGTACGAGTAAACCAT 58.649 45.455 0.00 0.00 38.30 3.55
114 115 4.517285 ACGAGAGGTACGAGTAAACCATA 58.483 43.478 0.00 0.00 38.30 2.74
115 116 4.943705 ACGAGAGGTACGAGTAAACCATAA 59.056 41.667 0.00 0.00 38.30 1.90
116 117 5.591877 ACGAGAGGTACGAGTAAACCATAAT 59.408 40.000 0.00 0.00 38.30 1.28
117 118 5.913514 CGAGAGGTACGAGTAAACCATAATG 59.086 44.000 0.00 0.00 38.30 1.90
118 119 6.158023 AGAGGTACGAGTAAACCATAATGG 57.842 41.667 0.00 0.00 45.02 3.16
119 120 5.070047 AGAGGTACGAGTAAACCATAATGGG 59.930 44.000 0.00 0.00 43.37 4.00
120 121 4.102054 AGGTACGAGTAAACCATAATGGGG 59.898 45.833 0.00 0.00 43.37 4.96
121 122 4.141642 GGTACGAGTAAACCATAATGGGGT 60.142 45.833 0.00 0.00 43.37 4.95
122 123 5.070313 GGTACGAGTAAACCATAATGGGGTA 59.930 44.000 0.00 0.00 43.37 3.69
123 124 5.286267 ACGAGTAAACCATAATGGGGTAG 57.714 43.478 0.00 0.00 43.37 3.18
124 125 4.718276 ACGAGTAAACCATAATGGGGTAGT 59.282 41.667 0.00 0.00 43.37 2.73
125 126 5.898972 ACGAGTAAACCATAATGGGGTAGTA 59.101 40.000 0.00 0.00 43.37 1.82
126 127 6.556116 ACGAGTAAACCATAATGGGGTAGTAT 59.444 38.462 0.00 0.00 43.37 2.12
127 128 7.071572 ACGAGTAAACCATAATGGGGTAGTATT 59.928 37.037 0.00 0.00 43.37 1.89
128 129 7.601508 CGAGTAAACCATAATGGGGTAGTATTC 59.398 40.741 0.00 0.00 43.37 1.75
129 130 7.752638 AGTAAACCATAATGGGGTAGTATTCC 58.247 38.462 0.00 0.00 43.37 3.01
130 131 6.858792 AAACCATAATGGGGTAGTATTCCT 57.141 37.500 0.00 0.00 43.37 3.36
131 132 6.449830 AACCATAATGGGGTAGTATTCCTC 57.550 41.667 0.00 0.00 43.37 3.71
132 133 5.738401 ACCATAATGGGGTAGTATTCCTCT 58.262 41.667 0.00 0.00 43.37 3.69
133 134 6.882155 ACCATAATGGGGTAGTATTCCTCTA 58.118 40.000 0.00 0.00 43.37 2.43
134 135 6.960542 ACCATAATGGGGTAGTATTCCTCTAG 59.039 42.308 0.00 0.00 43.37 2.43
135 136 6.384305 CCATAATGGGGTAGTATTCCTCTAGG 59.616 46.154 0.00 0.00 32.67 3.02
136 137 5.435545 AATGGGGTAGTATTCCTCTAGGT 57.564 43.478 0.00 0.00 36.34 3.08
137 138 4.913154 TGGGGTAGTATTCCTCTAGGTT 57.087 45.455 0.00 0.00 36.34 3.50
138 139 4.553678 TGGGGTAGTATTCCTCTAGGTTG 58.446 47.826 0.00 0.00 36.34 3.77
139 140 4.015918 TGGGGTAGTATTCCTCTAGGTTGT 60.016 45.833 0.00 0.00 36.34 3.32
140 141 4.967442 GGGGTAGTATTCCTCTAGGTTGTT 59.033 45.833 0.00 0.00 36.34 2.83
141 142 5.163332 GGGGTAGTATTCCTCTAGGTTGTTG 60.163 48.000 0.00 0.00 36.34 3.33
142 143 5.358090 GGTAGTATTCCTCTAGGTTGTTGC 58.642 45.833 0.00 0.00 36.34 4.17
143 144 5.128991 GGTAGTATTCCTCTAGGTTGTTGCT 59.871 44.000 0.00 0.00 36.34 3.91
144 145 5.763876 AGTATTCCTCTAGGTTGTTGCTT 57.236 39.130 0.00 0.00 36.34 3.91
145 146 6.869206 AGTATTCCTCTAGGTTGTTGCTTA 57.131 37.500 0.00 0.00 36.34 3.09
146 147 7.253905 AGTATTCCTCTAGGTTGTTGCTTAA 57.746 36.000 0.00 0.00 36.34 1.85
147 148 7.686434 AGTATTCCTCTAGGTTGTTGCTTAAA 58.314 34.615 0.00 0.00 36.34 1.52
148 149 8.329502 AGTATTCCTCTAGGTTGTTGCTTAAAT 58.670 33.333 0.00 0.00 36.34 1.40
149 150 8.957466 GTATTCCTCTAGGTTGTTGCTTAAATT 58.043 33.333 0.00 0.00 36.34 1.82
150 151 7.448748 TTCCTCTAGGTTGTTGCTTAAATTC 57.551 36.000 0.00 0.00 36.34 2.17
151 152 5.944007 TCCTCTAGGTTGTTGCTTAAATTCC 59.056 40.000 0.00 0.00 36.34 3.01
152 153 5.710099 CCTCTAGGTTGTTGCTTAAATTCCA 59.290 40.000 0.00 0.00 0.00 3.53
153 154 6.208599 CCTCTAGGTTGTTGCTTAAATTCCAA 59.791 38.462 0.00 0.00 0.00 3.53
154 155 6.977213 TCTAGGTTGTTGCTTAAATTCCAAC 58.023 36.000 0.00 0.00 39.32 3.77
155 156 5.869649 AGGTTGTTGCTTAAATTCCAACT 57.130 34.783 0.00 0.00 39.53 3.16
156 157 6.233905 AGGTTGTTGCTTAAATTCCAACTT 57.766 33.333 0.00 0.00 39.53 2.66
157 158 6.649155 AGGTTGTTGCTTAAATTCCAACTTT 58.351 32.000 0.00 0.00 39.53 2.66
158 159 6.538381 AGGTTGTTGCTTAAATTCCAACTTTG 59.462 34.615 0.00 0.00 39.53 2.77
159 160 6.536941 GGTTGTTGCTTAAATTCCAACTTTGA 59.463 34.615 0.00 0.00 39.53 2.69
160 161 7.398746 GTTGTTGCTTAAATTCCAACTTTGAC 58.601 34.615 0.00 0.00 39.53 3.18
161 162 6.045955 TGTTGCTTAAATTCCAACTTTGACC 58.954 36.000 0.00 0.00 39.53 4.02
162 163 5.860941 TGCTTAAATTCCAACTTTGACCA 57.139 34.783 0.00 0.00 0.00 4.02
163 164 6.227298 TGCTTAAATTCCAACTTTGACCAA 57.773 33.333 0.00 0.00 0.00 3.67
164 165 6.045955 TGCTTAAATTCCAACTTTGACCAAC 58.954 36.000 0.00 0.00 0.00 3.77
165 166 5.174943 GCTTAAATTCCAACTTTGACCAACG 59.825 40.000 0.00 0.00 0.00 4.10
166 167 4.729227 AAATTCCAACTTTGACCAACGT 57.271 36.364 0.00 0.00 0.00 3.99
167 168 5.838531 AAATTCCAACTTTGACCAACGTA 57.161 34.783 0.00 0.00 0.00 3.57
168 169 4.823790 ATTCCAACTTTGACCAACGTAC 57.176 40.909 0.00 0.00 0.00 3.67
169 170 2.203401 TCCAACTTTGACCAACGTACG 58.797 47.619 15.01 15.01 0.00 3.67
170 171 1.935199 CCAACTTTGACCAACGTACGT 59.065 47.619 16.72 16.72 0.00 3.57
171 172 2.285950 CCAACTTTGACCAACGTACGTG 60.286 50.000 23.57 13.07 0.00 4.49
172 173 2.298411 ACTTTGACCAACGTACGTGT 57.702 45.000 23.57 16.57 0.00 4.49
173 174 2.620242 ACTTTGACCAACGTACGTGTT 58.380 42.857 23.57 9.12 0.00 3.32
174 175 2.349275 ACTTTGACCAACGTACGTGTTG 59.651 45.455 23.57 17.09 46.86 3.33
175 176 2.007360 TTGACCAACGTACGTGTTGT 57.993 45.000 23.57 18.50 46.08 3.32
176 177 1.558741 TGACCAACGTACGTGTTGTC 58.441 50.000 23.57 25.07 46.08 3.18
177 178 1.134753 TGACCAACGTACGTGTTGTCT 59.865 47.619 29.29 12.68 46.08 3.41
178 179 2.357323 TGACCAACGTACGTGTTGTCTA 59.643 45.455 29.29 19.81 46.08 2.59
179 180 3.181492 TGACCAACGTACGTGTTGTCTAA 60.181 43.478 29.29 17.24 46.08 2.10
180 181 3.779759 ACCAACGTACGTGTTGTCTAAA 58.220 40.909 23.57 0.00 46.08 1.85
181 182 3.798337 ACCAACGTACGTGTTGTCTAAAG 59.202 43.478 23.57 6.01 46.08 1.85
182 183 3.798337 CCAACGTACGTGTTGTCTAAAGT 59.202 43.478 23.57 0.00 46.08 2.66
183 184 4.085415 CCAACGTACGTGTTGTCTAAAGTC 60.085 45.833 23.57 0.00 46.08 3.01
184 185 4.291540 ACGTACGTGTTGTCTAAAGTCA 57.708 40.909 22.14 0.00 0.00 3.41
185 186 4.671377 ACGTACGTGTTGTCTAAAGTCAA 58.329 39.130 22.14 0.00 0.00 3.18
186 187 4.736793 ACGTACGTGTTGTCTAAAGTCAAG 59.263 41.667 22.14 0.00 0.00 3.02
187 188 4.374707 CGTACGTGTTGTCTAAAGTCAAGC 60.375 45.833 7.22 0.00 0.00 4.01
188 189 3.793559 ACGTGTTGTCTAAAGTCAAGCT 58.206 40.909 0.00 0.00 0.00 3.74
189 190 4.189231 ACGTGTTGTCTAAAGTCAAGCTT 58.811 39.130 0.00 0.00 39.52 3.74
191 192 5.813672 ACGTGTTGTCTAAAGTCAAGCTTTA 59.186 36.000 0.00 0.00 44.90 1.85
192 193 6.482308 ACGTGTTGTCTAAAGTCAAGCTTTAT 59.518 34.615 0.00 0.00 45.46 1.40
193 194 7.010023 CGTGTTGTCTAAAGTCAAGCTTTATC 58.990 38.462 0.00 0.00 45.46 1.75
194 195 7.298854 GTGTTGTCTAAAGTCAAGCTTTATCC 58.701 38.462 0.00 0.00 45.46 2.59
195 196 6.995686 TGTTGTCTAAAGTCAAGCTTTATCCA 59.004 34.615 0.00 0.00 45.46 3.41
196 197 7.041372 TGTTGTCTAAAGTCAAGCTTTATCCAC 60.041 37.037 0.00 0.00 45.46 4.02
197 198 6.769512 TGTCTAAAGTCAAGCTTTATCCACT 58.230 36.000 0.00 0.00 45.46 4.00
198 199 7.903145 TGTCTAAAGTCAAGCTTTATCCACTA 58.097 34.615 0.00 0.00 45.46 2.74
199 200 8.372459 TGTCTAAAGTCAAGCTTTATCCACTAA 58.628 33.333 0.00 0.00 45.46 2.24
200 201 8.657729 GTCTAAAGTCAAGCTTTATCCACTAAC 58.342 37.037 0.00 0.00 45.46 2.34
201 202 8.594550 TCTAAAGTCAAGCTTTATCCACTAACT 58.405 33.333 0.00 0.00 45.46 2.24
202 203 7.440523 AAAGTCAAGCTTTATCCACTAACTG 57.559 36.000 0.00 0.00 44.90 3.16
203 204 6.115448 AGTCAAGCTTTATCCACTAACTGT 57.885 37.500 0.00 0.00 0.00 3.55
204 205 6.166982 AGTCAAGCTTTATCCACTAACTGTC 58.833 40.000 0.00 0.00 0.00 3.51
205 206 5.351740 GTCAAGCTTTATCCACTAACTGTCC 59.648 44.000 0.00 0.00 0.00 4.02
206 207 5.012664 TCAAGCTTTATCCACTAACTGTCCA 59.987 40.000 0.00 0.00 0.00 4.02
207 208 5.091261 AGCTTTATCCACTAACTGTCCAG 57.909 43.478 0.00 0.00 0.00 3.86
208 209 4.532521 AGCTTTATCCACTAACTGTCCAGT 59.467 41.667 0.00 0.00 44.94 4.00
209 210 5.720041 AGCTTTATCCACTAACTGTCCAGTA 59.280 40.000 0.00 0.00 41.58 2.74
210 211 6.212791 AGCTTTATCCACTAACTGTCCAGTAA 59.787 38.462 0.00 0.00 41.58 2.24
211 212 7.048512 GCTTTATCCACTAACTGTCCAGTAAT 58.951 38.462 0.00 0.00 41.58 1.89
212 213 8.202137 GCTTTATCCACTAACTGTCCAGTAATA 58.798 37.037 0.00 0.00 41.58 0.98
215 216 5.914033 TCCACTAACTGTCCAGTAATATGC 58.086 41.667 0.00 0.00 41.58 3.14
216 217 5.423931 TCCACTAACTGTCCAGTAATATGCA 59.576 40.000 0.00 0.00 41.58 3.96
217 218 6.070481 TCCACTAACTGTCCAGTAATATGCAA 60.070 38.462 0.00 0.00 41.58 4.08
218 219 6.767902 CCACTAACTGTCCAGTAATATGCAAT 59.232 38.462 0.00 0.00 41.58 3.56
219 220 7.041780 CCACTAACTGTCCAGTAATATGCAATC 60.042 40.741 0.00 0.00 41.58 2.67
220 221 5.991328 AACTGTCCAGTAATATGCAATCG 57.009 39.130 0.00 0.00 41.58 3.34
221 222 5.023533 ACTGTCCAGTAATATGCAATCGT 57.976 39.130 0.00 0.00 40.43 3.73
222 223 4.811024 ACTGTCCAGTAATATGCAATCGTG 59.189 41.667 0.00 0.00 40.43 4.35
223 224 4.765273 TGTCCAGTAATATGCAATCGTGT 58.235 39.130 0.00 0.00 0.00 4.49
224 225 5.182487 TGTCCAGTAATATGCAATCGTGTT 58.818 37.500 0.00 0.00 0.00 3.32
225 226 6.342111 TGTCCAGTAATATGCAATCGTGTTA 58.658 36.000 0.00 0.00 0.00 2.41
226 227 6.256975 TGTCCAGTAATATGCAATCGTGTTAC 59.743 38.462 0.00 0.00 36.58 2.50
227 228 5.460748 TCCAGTAATATGCAATCGTGTTACG 59.539 40.000 0.00 0.00 44.19 3.18
228 229 5.233476 CCAGTAATATGCAATCGTGTTACGT 59.767 40.000 0.00 0.00 43.14 3.57
229 230 6.418523 CCAGTAATATGCAATCGTGTTACGTA 59.581 38.462 0.00 0.00 43.14 3.57
230 231 7.358105 CCAGTAATATGCAATCGTGTTACGTAG 60.358 40.741 0.00 0.00 43.14 3.51
232 233 8.344831 AGTAATATGCAATCGTGTTACGTAGTA 58.655 33.333 0.00 0.00 45.11 1.82
233 234 6.981379 ATATGCAATCGTGTTACGTAGTAC 57.019 37.500 0.00 0.00 45.76 2.73
234 235 3.500982 TGCAATCGTGTTACGTAGTACC 58.499 45.455 0.00 0.00 45.76 3.34
235 236 3.057666 TGCAATCGTGTTACGTAGTACCA 60.058 43.478 0.00 0.00 45.76 3.25
236 237 3.919804 GCAATCGTGTTACGTAGTACCAA 59.080 43.478 0.00 0.00 45.76 3.67
237 238 4.385447 GCAATCGTGTTACGTAGTACCAAA 59.615 41.667 0.00 0.00 45.76 3.28
238 239 5.062558 GCAATCGTGTTACGTAGTACCAAAT 59.937 40.000 0.00 0.00 45.76 2.32
239 240 6.401367 GCAATCGTGTTACGTAGTACCAAATT 60.401 38.462 0.00 0.00 45.76 1.82
240 241 7.512297 CAATCGTGTTACGTAGTACCAAATTT 58.488 34.615 0.00 0.00 45.76 1.82
241 242 6.450845 TCGTGTTACGTAGTACCAAATTTG 57.549 37.500 11.40 11.40 45.76 2.32
242 243 5.404968 TCGTGTTACGTAGTACCAAATTTGG 59.595 40.000 31.42 31.42 45.76 3.28
280 281 9.695526 TTTACATGATTGAATTTTGACTTCTGG 57.304 29.630 0.00 0.00 0.00 3.86
281 282 7.528996 ACATGATTGAATTTTGACTTCTGGA 57.471 32.000 0.00 0.00 0.00 3.86
282 283 7.954835 ACATGATTGAATTTTGACTTCTGGAA 58.045 30.769 0.00 0.00 0.00 3.53
283 284 8.423349 ACATGATTGAATTTTGACTTCTGGAAA 58.577 29.630 0.00 0.00 0.00 3.13
284 285 9.263538 CATGATTGAATTTTGACTTCTGGAAAA 57.736 29.630 0.00 0.00 0.00 2.29
286 287 9.835389 TGATTGAATTTTGACTTCTGGAAAATT 57.165 25.926 0.00 0.00 40.35 1.82
288 289 9.617523 ATTGAATTTTGACTTCTGGAAAATTGT 57.382 25.926 0.00 0.00 38.68 2.71
289 290 8.422973 TGAATTTTGACTTCTGGAAAATTGTG 57.577 30.769 0.00 0.00 38.68 3.33
290 291 7.495279 TGAATTTTGACTTCTGGAAAATTGTGG 59.505 33.333 0.00 0.00 38.68 4.17
291 292 6.537453 TTTTGACTTCTGGAAAATTGTGGA 57.463 33.333 0.00 0.00 0.00 4.02
292 293 6.729690 TTTGACTTCTGGAAAATTGTGGAT 57.270 33.333 0.00 0.00 0.00 3.41
293 294 6.729690 TTGACTTCTGGAAAATTGTGGATT 57.270 33.333 0.00 0.00 0.00 3.01
294 295 6.088016 TGACTTCTGGAAAATTGTGGATTG 57.912 37.500 0.00 0.00 0.00 2.67
295 296 4.886579 ACTTCTGGAAAATTGTGGATTGC 58.113 39.130 0.00 0.00 0.00 3.56
296 297 3.959535 TCTGGAAAATTGTGGATTGCC 57.040 42.857 0.00 0.00 0.00 4.52
297 298 3.237746 TCTGGAAAATTGTGGATTGCCA 58.762 40.909 0.00 0.00 43.47 4.92
306 307 3.402186 TGGATTGCCATCGGATGTC 57.598 52.632 16.29 4.59 39.92 3.06
307 308 0.839277 TGGATTGCCATCGGATGTCT 59.161 50.000 16.29 0.00 39.92 3.41
308 309 1.202687 TGGATTGCCATCGGATGTCTC 60.203 52.381 16.29 7.32 39.92 3.36
309 310 1.071385 GGATTGCCATCGGATGTCTCT 59.929 52.381 16.29 0.00 0.00 3.10
310 311 2.411904 GATTGCCATCGGATGTCTCTC 58.588 52.381 16.29 5.01 0.00 3.20
311 312 1.489481 TTGCCATCGGATGTCTCTCT 58.511 50.000 16.29 0.00 0.00 3.10
312 313 1.489481 TGCCATCGGATGTCTCTCTT 58.511 50.000 16.29 0.00 0.00 2.85
313 314 2.666317 TGCCATCGGATGTCTCTCTTA 58.334 47.619 16.29 0.00 0.00 2.10
314 315 2.625314 TGCCATCGGATGTCTCTCTTAG 59.375 50.000 16.29 0.00 0.00 2.18
315 316 2.887783 GCCATCGGATGTCTCTCTTAGA 59.112 50.000 16.29 0.00 0.00 2.10
325 326 2.277969 TCTCTCTTAGACTACACCGCG 58.722 52.381 0.00 0.00 0.00 6.46
326 327 2.093816 TCTCTCTTAGACTACACCGCGA 60.094 50.000 8.23 0.00 0.00 5.87
327 328 2.005451 TCTCTTAGACTACACCGCGAC 58.995 52.381 8.23 0.00 0.00 5.19
328 329 1.736126 CTCTTAGACTACACCGCGACA 59.264 52.381 8.23 0.00 0.00 4.35
329 330 1.736126 TCTTAGACTACACCGCGACAG 59.264 52.381 8.23 0.63 0.00 3.51
330 331 1.467734 CTTAGACTACACCGCGACAGT 59.532 52.381 8.23 5.37 0.00 3.55
331 332 1.081892 TAGACTACACCGCGACAGTC 58.918 55.000 8.23 13.93 38.13 3.51
332 333 0.887836 AGACTACACCGCGACAGTCA 60.888 55.000 22.31 0.19 39.90 3.41
333 334 0.170561 GACTACACCGCGACAGTCAT 59.829 55.000 8.23 0.00 37.84 3.06
334 335 0.170561 ACTACACCGCGACAGTCATC 59.829 55.000 8.23 0.00 0.00 2.92
335 336 0.525668 CTACACCGCGACAGTCATCC 60.526 60.000 8.23 0.00 0.00 3.51
336 337 2.261172 TACACCGCGACAGTCATCCG 62.261 60.000 8.23 0.00 0.00 4.18
337 338 3.060000 ACCGCGACAGTCATCCGA 61.060 61.111 8.23 0.00 0.00 4.55
338 339 2.579787 CCGCGACAGTCATCCGAC 60.580 66.667 8.23 0.00 42.95 4.79
339 340 2.579787 CGCGACAGTCATCCGACC 60.580 66.667 0.00 0.00 43.73 4.79
340 341 2.885861 GCGACAGTCATCCGACCT 59.114 61.111 0.41 0.00 43.73 3.85
341 342 1.517257 GCGACAGTCATCCGACCTG 60.517 63.158 0.41 0.00 43.73 4.00
342 343 1.517257 CGACAGTCATCCGACCTGC 60.517 63.158 0.41 0.00 43.73 4.85
343 344 1.517257 GACAGTCATCCGACCTGCG 60.517 63.158 0.00 0.00 43.73 5.18
352 353 4.577246 CGACCTGCGGCCTAGCTC 62.577 72.222 0.00 0.00 38.13 4.09
353 354 4.228567 GACCTGCGGCCTAGCTCC 62.229 72.222 0.00 0.00 38.13 4.70
356 357 3.474570 CTGCGGCCTAGCTCCCTT 61.475 66.667 0.00 0.00 38.13 3.95
357 358 3.009115 TGCGGCCTAGCTCCCTTT 61.009 61.111 0.00 0.00 38.13 3.11
358 359 2.203084 GCGGCCTAGCTCCCTTTC 60.203 66.667 0.00 0.00 0.00 2.62
359 360 2.736826 GCGGCCTAGCTCCCTTTCT 61.737 63.158 0.00 0.00 0.00 2.52
360 361 1.443828 CGGCCTAGCTCCCTTTCTC 59.556 63.158 0.00 0.00 0.00 2.87
361 362 1.833606 GGCCTAGCTCCCTTTCTCC 59.166 63.158 0.00 0.00 0.00 3.71
362 363 0.692756 GGCCTAGCTCCCTTTCTCCT 60.693 60.000 0.00 0.00 0.00 3.69
363 364 0.756294 GCCTAGCTCCCTTTCTCCTC 59.244 60.000 0.00 0.00 0.00 3.71
364 365 1.419381 CCTAGCTCCCTTTCTCCTCC 58.581 60.000 0.00 0.00 0.00 4.30
365 366 1.343478 CCTAGCTCCCTTTCTCCTCCA 60.343 57.143 0.00 0.00 0.00 3.86
366 367 1.760029 CTAGCTCCCTTTCTCCTCCAC 59.240 57.143 0.00 0.00 0.00 4.02
367 368 0.118144 AGCTCCCTTTCTCCTCCACT 59.882 55.000 0.00 0.00 0.00 4.00
368 369 0.539518 GCTCCCTTTCTCCTCCACTC 59.460 60.000 0.00 0.00 0.00 3.51
369 370 1.899438 GCTCCCTTTCTCCTCCACTCT 60.899 57.143 0.00 0.00 0.00 3.24
370 371 2.107366 CTCCCTTTCTCCTCCACTCTC 58.893 57.143 0.00 0.00 0.00 3.20
371 372 1.199615 CCCTTTCTCCTCCACTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
372 373 1.553417 CCCTTTCTCCTCCACTCTCCA 60.553 57.143 0.00 0.00 0.00 3.86
373 374 2.476199 CCTTTCTCCTCCACTCTCCAT 58.524 52.381 0.00 0.00 0.00 3.41
374 375 2.433970 CCTTTCTCCTCCACTCTCCATC 59.566 54.545 0.00 0.00 0.00 3.51
375 376 1.769026 TTCTCCTCCACTCTCCATCG 58.231 55.000 0.00 0.00 0.00 3.84
376 377 0.753479 TCTCCTCCACTCTCCATCGC 60.753 60.000 0.00 0.00 0.00 4.58
377 378 1.743321 CTCCTCCACTCTCCATCGCC 61.743 65.000 0.00 0.00 0.00 5.54
378 379 2.415010 CTCCACTCTCCATCGCCG 59.585 66.667 0.00 0.00 0.00 6.46
379 380 2.362503 TCCACTCTCCATCGCCGT 60.363 61.111 0.00 0.00 0.00 5.68
380 381 2.105128 CCACTCTCCATCGCCGTC 59.895 66.667 0.00 0.00 0.00 4.79
381 382 2.278206 CACTCTCCATCGCCGTCG 60.278 66.667 0.00 0.00 0.00 5.12
382 383 3.518998 ACTCTCCATCGCCGTCGG 61.519 66.667 6.99 6.99 36.13 4.79
383 384 4.933064 CTCTCCATCGCCGTCGGC 62.933 72.222 26.69 26.69 46.75 5.54
403 404 3.278367 CAAGAGTTGCATGACAGTTGG 57.722 47.619 0.00 0.00 0.00 3.77
404 405 1.242076 AGAGTTGCATGACAGTTGGC 58.758 50.000 0.00 0.00 0.00 4.52
405 406 0.110056 GAGTTGCATGACAGTTGGCG 60.110 55.000 0.00 0.00 0.00 5.69
406 407 1.730547 GTTGCATGACAGTTGGCGC 60.731 57.895 0.00 0.00 0.00 6.53
407 408 2.918345 TTGCATGACAGTTGGCGCC 61.918 57.895 22.73 22.73 0.00 6.53
408 409 4.465512 GCATGACAGTTGGCGCCG 62.466 66.667 23.90 10.06 0.00 6.46
409 410 3.803082 CATGACAGTTGGCGCCGG 61.803 66.667 23.90 13.77 0.00 6.13
422 423 4.148825 GCCGGCAGACATCTCGGT 62.149 66.667 24.80 0.00 43.87 4.69
423 424 2.782222 GCCGGCAGACATCTCGGTA 61.782 63.158 24.80 0.00 43.87 4.02
424 425 2.041976 CCGGCAGACATCTCGGTAT 58.958 57.895 0.00 0.00 37.92 2.73
425 426 1.244816 CCGGCAGACATCTCGGTATA 58.755 55.000 0.00 0.00 37.92 1.47
426 427 1.200252 CCGGCAGACATCTCGGTATAG 59.800 57.143 0.00 0.00 37.92 1.31
427 428 2.152016 CGGCAGACATCTCGGTATAGA 58.848 52.381 0.00 0.00 0.00 1.98
428 429 2.750166 CGGCAGACATCTCGGTATAGAT 59.250 50.000 0.00 0.00 36.64 1.98
429 430 3.939592 CGGCAGACATCTCGGTATAGATA 59.060 47.826 0.00 0.00 34.40 1.98
430 431 4.034626 CGGCAGACATCTCGGTATAGATAG 59.965 50.000 0.00 0.00 34.40 2.08
431 432 4.336993 GGCAGACATCTCGGTATAGATAGG 59.663 50.000 0.00 0.00 34.40 2.57
432 433 5.186942 GCAGACATCTCGGTATAGATAGGA 58.813 45.833 0.00 0.00 34.40 2.94
433 434 5.825679 GCAGACATCTCGGTATAGATAGGAT 59.174 44.000 0.00 0.00 34.40 3.24
434 435 6.017440 GCAGACATCTCGGTATAGATAGGATC 60.017 46.154 0.00 0.00 34.40 3.36
435 436 7.051000 CAGACATCTCGGTATAGATAGGATCA 58.949 42.308 0.00 0.00 34.40 2.92
436 437 7.226523 CAGACATCTCGGTATAGATAGGATCAG 59.773 44.444 0.00 0.00 34.40 2.90
437 438 6.964464 ACATCTCGGTATAGATAGGATCAGT 58.036 40.000 0.00 0.00 34.40 3.41
438 439 8.091952 ACATCTCGGTATAGATAGGATCAGTA 57.908 38.462 0.00 0.00 34.40 2.74
439 440 8.208224 ACATCTCGGTATAGATAGGATCAGTAG 58.792 40.741 0.00 0.00 34.40 2.57
440 441 7.974730 TCTCGGTATAGATAGGATCAGTAGA 57.025 40.000 0.00 0.00 0.00 2.59
441 442 8.014070 TCTCGGTATAGATAGGATCAGTAGAG 57.986 42.308 0.00 0.00 0.00 2.43
442 443 7.070198 TCTCGGTATAGATAGGATCAGTAGAGG 59.930 44.444 0.00 0.00 0.00 3.69
443 444 5.761234 CGGTATAGATAGGATCAGTAGAGGC 59.239 48.000 0.00 0.00 0.00 4.70
444 445 6.408776 CGGTATAGATAGGATCAGTAGAGGCT 60.409 46.154 0.00 0.00 0.00 4.58
445 446 7.351166 GGTATAGATAGGATCAGTAGAGGCTT 58.649 42.308 0.00 0.00 0.00 4.35
446 447 7.284489 GGTATAGATAGGATCAGTAGAGGCTTG 59.716 44.444 0.00 0.00 0.00 4.01
447 448 3.831911 AGATAGGATCAGTAGAGGCTTGC 59.168 47.826 0.00 0.00 0.00 4.01
448 449 1.871418 AGGATCAGTAGAGGCTTGCA 58.129 50.000 0.00 0.00 0.00 4.08
449 450 1.761784 AGGATCAGTAGAGGCTTGCAG 59.238 52.381 0.00 0.00 0.00 4.41
450 451 1.202627 GGATCAGTAGAGGCTTGCAGG 60.203 57.143 0.00 0.00 0.00 4.85
451 452 1.759445 GATCAGTAGAGGCTTGCAGGA 59.241 52.381 0.00 0.00 0.00 3.86
452 453 1.189752 TCAGTAGAGGCTTGCAGGAG 58.810 55.000 0.00 0.00 0.00 3.69
453 454 0.461693 CAGTAGAGGCTTGCAGGAGC 60.462 60.000 0.00 0.00 41.96 4.70
454 455 0.617249 AGTAGAGGCTTGCAGGAGCT 60.617 55.000 10.12 0.00 42.32 4.09
455 456 0.251634 GTAGAGGCTTGCAGGAGCTT 59.748 55.000 10.12 2.39 42.32 3.74
456 457 1.482593 GTAGAGGCTTGCAGGAGCTTA 59.517 52.381 10.12 0.00 42.32 3.09
457 458 0.540923 AGAGGCTTGCAGGAGCTTAG 59.459 55.000 10.12 0.00 42.32 2.18
458 459 0.539051 GAGGCTTGCAGGAGCTTAGA 59.461 55.000 10.12 0.00 42.32 2.10
459 460 0.987294 AGGCTTGCAGGAGCTTAGAA 59.013 50.000 10.12 0.00 42.32 2.10
460 461 1.065564 AGGCTTGCAGGAGCTTAGAAG 60.066 52.381 10.12 0.00 42.32 2.85
461 462 1.065854 GGCTTGCAGGAGCTTAGAAGA 60.066 52.381 10.12 0.00 42.32 2.87
462 463 2.278854 GCTTGCAGGAGCTTAGAAGAG 58.721 52.381 0.00 0.00 42.74 2.85
463 464 2.903798 CTTGCAGGAGCTTAGAAGAGG 58.096 52.381 0.00 0.00 42.74 3.69
464 465 1.198713 TGCAGGAGCTTAGAAGAGGG 58.801 55.000 0.00 0.00 42.74 4.30
465 466 1.273267 TGCAGGAGCTTAGAAGAGGGA 60.273 52.381 0.00 0.00 42.74 4.20
466 467 1.412343 GCAGGAGCTTAGAAGAGGGAG 59.588 57.143 0.00 0.00 37.91 4.30
467 468 1.412343 CAGGAGCTTAGAAGAGGGAGC 59.588 57.143 0.00 0.00 35.42 4.70
469 470 2.516277 AGGAGCTTAGAAGAGGGAGCTA 59.484 50.000 0.00 0.00 44.88 3.32
470 471 2.890945 GGAGCTTAGAAGAGGGAGCTAG 59.109 54.545 0.00 0.00 44.88 3.42
471 472 2.890945 GAGCTTAGAAGAGGGAGCTAGG 59.109 54.545 0.00 0.00 44.88 3.02
472 473 1.967779 GCTTAGAAGAGGGAGCTAGGG 59.032 57.143 0.00 0.00 32.54 3.53
473 474 1.967779 CTTAGAAGAGGGAGCTAGGGC 59.032 57.143 0.00 0.00 39.06 5.19
474 475 0.934446 TAGAAGAGGGAGCTAGGGCA 59.066 55.000 0.00 0.00 41.70 5.36
475 476 0.267356 AGAAGAGGGAGCTAGGGCAT 59.733 55.000 0.00 0.00 41.70 4.40
476 477 0.684535 GAAGAGGGAGCTAGGGCATC 59.315 60.000 0.00 0.00 41.70 3.91
477 478 0.267356 AAGAGGGAGCTAGGGCATCT 59.733 55.000 0.00 0.00 41.70 2.90
478 479 0.267356 AGAGGGAGCTAGGGCATCTT 59.733 55.000 0.00 0.00 41.70 2.40
479 480 0.684535 GAGGGAGCTAGGGCATCTTC 59.315 60.000 0.00 0.00 41.70 2.87
480 481 0.030705 AGGGAGCTAGGGCATCTTCA 60.031 55.000 0.00 0.00 41.70 3.02
481 482 0.839946 GGGAGCTAGGGCATCTTCAA 59.160 55.000 0.00 0.00 41.70 2.69
482 483 1.475930 GGGAGCTAGGGCATCTTCAAC 60.476 57.143 0.00 0.00 41.70 3.18
483 484 1.576356 GAGCTAGGGCATCTTCAACG 58.424 55.000 0.00 0.00 41.70 4.10
484 485 0.462759 AGCTAGGGCATCTTCAACGC 60.463 55.000 0.00 0.00 41.70 4.84
485 486 1.440145 GCTAGGGCATCTTCAACGCC 61.440 60.000 0.00 0.00 45.47 5.68
488 489 2.785258 GGCATCTTCAACGCCGAC 59.215 61.111 0.00 0.00 35.79 4.79
489 490 2.750888 GGCATCTTCAACGCCGACC 61.751 63.158 0.00 0.00 35.79 4.79
490 491 1.741770 GCATCTTCAACGCCGACCT 60.742 57.895 0.00 0.00 0.00 3.85
491 492 1.298859 GCATCTTCAACGCCGACCTT 61.299 55.000 0.00 0.00 0.00 3.50
492 493 0.721718 CATCTTCAACGCCGACCTTC 59.278 55.000 0.00 0.00 0.00 3.46
493 494 0.320374 ATCTTCAACGCCGACCTTCA 59.680 50.000 0.00 0.00 0.00 3.02
494 495 0.105224 TCTTCAACGCCGACCTTCAA 59.895 50.000 0.00 0.00 0.00 2.69
495 496 0.941542 CTTCAACGCCGACCTTCAAA 59.058 50.000 0.00 0.00 0.00 2.69
496 497 1.332375 CTTCAACGCCGACCTTCAAAA 59.668 47.619 0.00 0.00 0.00 2.44
497 498 0.658897 TCAACGCCGACCTTCAAAAC 59.341 50.000 0.00 0.00 0.00 2.43
498 499 0.378962 CAACGCCGACCTTCAAAACA 59.621 50.000 0.00 0.00 0.00 2.83
499 500 0.661020 AACGCCGACCTTCAAAACAG 59.339 50.000 0.00 0.00 0.00 3.16
500 501 0.179067 ACGCCGACCTTCAAAACAGA 60.179 50.000 0.00 0.00 0.00 3.41
501 502 0.234884 CGCCGACCTTCAAAACAGAC 59.765 55.000 0.00 0.00 0.00 3.51
502 503 0.591659 GCCGACCTTCAAAACAGACC 59.408 55.000 0.00 0.00 0.00 3.85
503 504 1.235724 CCGACCTTCAAAACAGACCC 58.764 55.000 0.00 0.00 0.00 4.46
504 505 1.476110 CCGACCTTCAAAACAGACCCA 60.476 52.381 0.00 0.00 0.00 4.51
505 506 2.504367 CGACCTTCAAAACAGACCCAT 58.496 47.619 0.00 0.00 0.00 4.00
506 507 2.884639 CGACCTTCAAAACAGACCCATT 59.115 45.455 0.00 0.00 0.00 3.16
507 508 4.069304 CGACCTTCAAAACAGACCCATTA 58.931 43.478 0.00 0.00 0.00 1.90
508 509 4.700213 CGACCTTCAAAACAGACCCATTAT 59.300 41.667 0.00 0.00 0.00 1.28
509 510 5.183140 CGACCTTCAAAACAGACCCATTATT 59.817 40.000 0.00 0.00 0.00 1.40
510 511 6.294508 CGACCTTCAAAACAGACCCATTATTT 60.295 38.462 0.00 0.00 0.00 1.40
511 512 6.758254 ACCTTCAAAACAGACCCATTATTTG 58.242 36.000 0.00 0.00 0.00 2.32
512 513 6.326323 ACCTTCAAAACAGACCCATTATTTGT 59.674 34.615 0.00 0.00 0.00 2.83
513 514 6.868339 CCTTCAAAACAGACCCATTATTTGTC 59.132 38.462 0.00 0.00 0.00 3.18
514 515 6.339587 TCAAAACAGACCCATTATTTGTCC 57.660 37.500 0.00 0.00 0.00 4.02
515 516 5.048364 TCAAAACAGACCCATTATTTGTCCG 60.048 40.000 0.00 0.00 0.00 4.79
516 517 3.713826 ACAGACCCATTATTTGTCCGT 57.286 42.857 0.00 0.00 0.00 4.69
517 518 3.343617 ACAGACCCATTATTTGTCCGTG 58.656 45.455 0.00 0.00 0.00 4.94
518 519 2.682856 CAGACCCATTATTTGTCCGTGG 59.317 50.000 0.00 0.00 0.00 4.94
519 520 2.574369 AGACCCATTATTTGTCCGTGGA 59.426 45.455 0.00 0.00 31.59 4.02
520 521 2.681344 GACCCATTATTTGTCCGTGGAC 59.319 50.000 12.17 12.17 44.77 4.02
531 532 2.278596 CGTGGACGCGGATACAGG 60.279 66.667 12.47 5.50 0.00 4.00
532 533 2.106332 GTGGACGCGGATACAGGG 59.894 66.667 12.47 0.00 0.00 4.45
533 534 2.363276 TGGACGCGGATACAGGGT 60.363 61.111 12.47 0.00 38.51 4.34
534 535 1.985662 TGGACGCGGATACAGGGTT 60.986 57.895 12.47 0.00 36.68 4.11
535 536 0.683828 TGGACGCGGATACAGGGTTA 60.684 55.000 12.47 0.00 36.68 2.85
536 537 0.677842 GGACGCGGATACAGGGTTAT 59.322 55.000 12.47 0.00 36.68 1.89
537 538 1.069668 GGACGCGGATACAGGGTTATT 59.930 52.381 12.47 0.00 36.68 1.40
538 539 2.401351 GACGCGGATACAGGGTTATTC 58.599 52.381 12.47 0.00 36.68 1.75
539 540 1.758280 ACGCGGATACAGGGTTATTCA 59.242 47.619 12.47 0.00 33.88 2.57
540 541 2.168936 ACGCGGATACAGGGTTATTCAA 59.831 45.455 12.47 0.00 33.88 2.69
541 542 2.542595 CGCGGATACAGGGTTATTCAAC 59.457 50.000 0.00 0.00 0.00 3.18
551 552 1.763968 GTTATTCAACCCTGCCCTCC 58.236 55.000 0.00 0.00 0.00 4.30
552 553 1.005450 GTTATTCAACCCTGCCCTCCA 59.995 52.381 0.00 0.00 0.00 3.86
553 554 1.377690 TATTCAACCCTGCCCTCCAA 58.622 50.000 0.00 0.00 0.00 3.53
554 555 0.251787 ATTCAACCCTGCCCTCCAAC 60.252 55.000 0.00 0.00 0.00 3.77
555 556 1.650242 TTCAACCCTGCCCTCCAACA 61.650 55.000 0.00 0.00 0.00 3.33
556 557 1.077265 CAACCCTGCCCTCCAACAT 59.923 57.895 0.00 0.00 0.00 2.71
557 558 0.542702 CAACCCTGCCCTCCAACATT 60.543 55.000 0.00 0.00 0.00 2.71
558 559 0.251787 AACCCTGCCCTCCAACATTC 60.252 55.000 0.00 0.00 0.00 2.67
559 560 1.750399 CCCTGCCCTCCAACATTCG 60.750 63.158 0.00 0.00 0.00 3.34
560 561 1.002134 CCTGCCCTCCAACATTCGT 60.002 57.895 0.00 0.00 0.00 3.85
561 562 0.609131 CCTGCCCTCCAACATTCGTT 60.609 55.000 0.00 0.00 35.01 3.85
562 563 1.247567 CTGCCCTCCAACATTCGTTT 58.752 50.000 0.00 0.00 31.13 3.60
881 882 4.057428 GGCGACAGAGAGCACGGT 62.057 66.667 0.00 0.00 34.54 4.83
1378 1383 2.042464 CCGGAAGAAGAGATGGATGGA 58.958 52.381 0.00 0.00 0.00 3.41
2244 2249 3.009916 AGGACAGATGGCAAGACTTTGAT 59.990 43.478 0.00 0.00 36.36 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 9.445878 TCGTACCTCTCGTATTTTAGATCATAT 57.554 33.333 0.00 0.00 0.00 1.78
79 80 8.837788 TCGTACCTCTCGTATTTTAGATCATA 57.162 34.615 0.00 0.00 0.00 2.15
80 81 7.444792 ACTCGTACCTCTCGTATTTTAGATCAT 59.555 37.037 0.00 0.00 0.00 2.45
81 82 6.765036 ACTCGTACCTCTCGTATTTTAGATCA 59.235 38.462 0.00 0.00 0.00 2.92
82 83 7.188468 ACTCGTACCTCTCGTATTTTAGATC 57.812 40.000 0.00 0.00 0.00 2.75
83 84 8.668510 TTACTCGTACCTCTCGTATTTTAGAT 57.331 34.615 0.00 0.00 0.00 1.98
84 85 8.391106 GTTTACTCGTACCTCTCGTATTTTAGA 58.609 37.037 0.00 0.00 0.00 2.10
85 86 7.641802 GGTTTACTCGTACCTCTCGTATTTTAG 59.358 40.741 0.00 0.00 0.00 1.85
86 87 7.120579 TGGTTTACTCGTACCTCTCGTATTTTA 59.879 37.037 0.00 0.00 35.41 1.52
87 88 6.071952 TGGTTTACTCGTACCTCTCGTATTTT 60.072 38.462 0.00 0.00 35.41 1.82
88 89 5.415701 TGGTTTACTCGTACCTCTCGTATTT 59.584 40.000 0.00 0.00 35.41 1.40
89 90 4.943705 TGGTTTACTCGTACCTCTCGTATT 59.056 41.667 0.00 0.00 35.41 1.89
90 91 4.517285 TGGTTTACTCGTACCTCTCGTAT 58.483 43.478 0.00 0.00 35.41 3.06
91 92 3.937814 TGGTTTACTCGTACCTCTCGTA 58.062 45.455 0.00 0.00 35.41 3.43
92 93 2.783135 TGGTTTACTCGTACCTCTCGT 58.217 47.619 0.00 0.00 35.41 4.18
93 94 5.490139 TTATGGTTTACTCGTACCTCTCG 57.510 43.478 0.00 0.00 35.41 4.04
94 95 6.214399 CCATTATGGTTTACTCGTACCTCTC 58.786 44.000 2.48 0.00 35.41 3.20
95 96 5.070047 CCCATTATGGTTTACTCGTACCTCT 59.930 44.000 10.65 0.00 35.17 3.69
96 97 5.295152 CCCATTATGGTTTACTCGTACCTC 58.705 45.833 10.65 0.00 35.17 3.85
97 98 4.102054 CCCCATTATGGTTTACTCGTACCT 59.898 45.833 10.65 0.00 35.17 3.08
98 99 4.141642 ACCCCATTATGGTTTACTCGTACC 60.142 45.833 10.65 0.00 35.17 3.34
99 100 5.027293 ACCCCATTATGGTTTACTCGTAC 57.973 43.478 10.65 0.00 35.17 3.67
100 101 5.898972 ACTACCCCATTATGGTTTACTCGTA 59.101 40.000 10.65 0.00 37.31 3.43
101 102 4.718276 ACTACCCCATTATGGTTTACTCGT 59.282 41.667 10.65 0.00 37.31 4.18
102 103 5.286267 ACTACCCCATTATGGTTTACTCG 57.714 43.478 10.65 0.00 37.31 4.18
103 104 7.881751 GGAATACTACCCCATTATGGTTTACTC 59.118 40.741 10.65 0.00 37.31 2.59
104 105 7.575129 AGGAATACTACCCCATTATGGTTTACT 59.425 37.037 10.65 0.00 37.31 2.24
105 106 7.752638 AGGAATACTACCCCATTATGGTTTAC 58.247 38.462 10.65 0.00 37.31 2.01
106 107 7.797617 AGAGGAATACTACCCCATTATGGTTTA 59.202 37.037 10.65 0.10 37.31 2.01
107 108 6.624021 AGAGGAATACTACCCCATTATGGTTT 59.376 38.462 10.65 0.00 37.31 3.27
108 109 6.158260 AGAGGAATACTACCCCATTATGGTT 58.842 40.000 10.65 0.00 37.31 3.67
109 110 5.738401 AGAGGAATACTACCCCATTATGGT 58.262 41.667 10.65 0.00 39.97 3.55
110 111 6.384305 CCTAGAGGAATACTACCCCATTATGG 59.616 46.154 3.85 3.85 37.39 2.74
111 112 6.960542 ACCTAGAGGAATACTACCCCATTATG 59.039 42.308 1.60 0.00 38.94 1.90
112 113 7.129823 ACCTAGAGGAATACTACCCCATTAT 57.870 40.000 1.60 0.00 38.94 1.28
113 114 6.556644 ACCTAGAGGAATACTACCCCATTA 57.443 41.667 1.60 0.00 38.94 1.90
114 115 5.435545 ACCTAGAGGAATACTACCCCATT 57.564 43.478 1.60 0.00 38.94 3.16
115 116 5.155905 CAACCTAGAGGAATACTACCCCAT 58.844 45.833 1.60 0.00 38.94 4.00
116 117 4.015918 ACAACCTAGAGGAATACTACCCCA 60.016 45.833 1.60 0.00 38.94 4.96
117 118 4.554683 ACAACCTAGAGGAATACTACCCC 58.445 47.826 1.60 0.00 38.94 4.95
118 119 5.684291 GCAACAACCTAGAGGAATACTACCC 60.684 48.000 1.60 0.00 38.94 3.69
119 120 5.128991 AGCAACAACCTAGAGGAATACTACC 59.871 44.000 1.60 0.00 38.94 3.18
120 121 6.223351 AGCAACAACCTAGAGGAATACTAC 57.777 41.667 1.60 0.00 38.94 2.73
121 122 6.869206 AAGCAACAACCTAGAGGAATACTA 57.131 37.500 1.60 0.00 38.94 1.82
122 123 5.763876 AAGCAACAACCTAGAGGAATACT 57.236 39.130 1.60 0.00 38.94 2.12
123 124 7.916914 TTTAAGCAACAACCTAGAGGAATAC 57.083 36.000 1.60 0.00 38.94 1.89
124 125 9.174166 GAATTTAAGCAACAACCTAGAGGAATA 57.826 33.333 1.60 0.00 38.94 1.75
125 126 7.122799 GGAATTTAAGCAACAACCTAGAGGAAT 59.877 37.037 1.60 0.00 38.94 3.01
126 127 6.433093 GGAATTTAAGCAACAACCTAGAGGAA 59.567 38.462 1.60 0.00 38.94 3.36
127 128 5.944007 GGAATTTAAGCAACAACCTAGAGGA 59.056 40.000 1.60 0.00 38.94 3.71
128 129 5.710099 TGGAATTTAAGCAACAACCTAGAGG 59.290 40.000 0.00 0.00 42.17 3.69
129 130 6.817765 TGGAATTTAAGCAACAACCTAGAG 57.182 37.500 0.00 0.00 0.00 2.43
130 131 6.775629 AGTTGGAATTTAAGCAACAACCTAGA 59.224 34.615 0.00 0.00 39.06 2.43
131 132 6.981722 AGTTGGAATTTAAGCAACAACCTAG 58.018 36.000 0.00 0.00 39.06 3.02
132 133 6.969993 AGTTGGAATTTAAGCAACAACCTA 57.030 33.333 0.00 0.00 39.06 3.08
133 134 5.869649 AGTTGGAATTTAAGCAACAACCT 57.130 34.783 0.00 0.00 39.06 3.50
134 135 6.536941 TCAAAGTTGGAATTTAAGCAACAACC 59.463 34.615 0.00 0.00 39.06 3.77
135 136 7.398746 GTCAAAGTTGGAATTTAAGCAACAAC 58.601 34.615 0.00 0.00 38.67 3.32
136 137 6.536941 GGTCAAAGTTGGAATTTAAGCAACAA 59.463 34.615 0.00 0.00 0.00 2.83
137 138 6.045955 GGTCAAAGTTGGAATTTAAGCAACA 58.954 36.000 0.00 0.00 0.00 3.33
138 139 6.045955 TGGTCAAAGTTGGAATTTAAGCAAC 58.954 36.000 0.00 0.00 0.00 4.17
139 140 6.227298 TGGTCAAAGTTGGAATTTAAGCAA 57.773 33.333 0.00 0.00 0.00 3.91
140 141 5.860941 TGGTCAAAGTTGGAATTTAAGCA 57.139 34.783 0.00 0.00 0.00 3.91
141 142 5.174943 CGTTGGTCAAAGTTGGAATTTAAGC 59.825 40.000 0.00 0.00 0.00 3.09
142 143 6.270064 ACGTTGGTCAAAGTTGGAATTTAAG 58.730 36.000 0.00 0.00 28.89 1.85
143 144 6.210287 ACGTTGGTCAAAGTTGGAATTTAA 57.790 33.333 0.00 0.00 28.89 1.52
144 145 5.838531 ACGTTGGTCAAAGTTGGAATTTA 57.161 34.783 0.00 0.00 28.89 1.40
145 146 4.729227 ACGTTGGTCAAAGTTGGAATTT 57.271 36.364 0.00 0.00 28.89 1.82
146 147 4.260866 CGTACGTTGGTCAAAGTTGGAATT 60.261 41.667 7.22 0.00 34.91 2.17
147 148 3.249080 CGTACGTTGGTCAAAGTTGGAAT 59.751 43.478 7.22 0.00 34.91 3.01
148 149 2.608546 CGTACGTTGGTCAAAGTTGGAA 59.391 45.455 7.22 0.00 34.91 3.53
149 150 2.203401 CGTACGTTGGTCAAAGTTGGA 58.797 47.619 7.22 0.00 34.91 3.53
150 151 1.935199 ACGTACGTTGGTCAAAGTTGG 59.065 47.619 16.72 3.76 34.91 3.77
151 152 2.349275 ACACGTACGTTGGTCAAAGTTG 59.651 45.455 20.23 5.34 34.91 3.16
152 153 2.620242 ACACGTACGTTGGTCAAAGTT 58.380 42.857 20.23 0.00 34.91 2.66
153 154 2.298411 ACACGTACGTTGGTCAAAGT 57.702 45.000 20.23 8.10 36.92 2.66
154 155 2.963969 CAACACGTACGTTGGTCAAAG 58.036 47.619 20.23 7.39 42.10 2.77
162 163 4.671377 TGACTTTAGACAACACGTACGTT 58.329 39.130 20.23 3.62 0.00 3.99
163 164 4.291540 TGACTTTAGACAACACGTACGT 57.708 40.909 16.72 16.72 0.00 3.57
164 165 4.374707 GCTTGACTTTAGACAACACGTACG 60.375 45.833 15.01 15.01 0.00 3.67
165 166 4.743644 AGCTTGACTTTAGACAACACGTAC 59.256 41.667 0.00 0.00 0.00 3.67
166 167 4.940463 AGCTTGACTTTAGACAACACGTA 58.060 39.130 0.00 0.00 0.00 3.57
167 168 3.793559 AGCTTGACTTTAGACAACACGT 58.206 40.909 0.00 0.00 0.00 4.49
168 169 4.795970 AAGCTTGACTTTAGACAACACG 57.204 40.909 0.00 0.00 33.71 4.49
179 180 6.534634 ACAGTTAGTGGATAAAGCTTGACTT 58.465 36.000 0.00 0.00 41.70 3.01
180 181 6.115448 ACAGTTAGTGGATAAAGCTTGACT 57.885 37.500 0.00 0.26 0.00 3.41
181 182 5.351740 GGACAGTTAGTGGATAAAGCTTGAC 59.648 44.000 0.00 0.00 0.00 3.18
182 183 5.012664 TGGACAGTTAGTGGATAAAGCTTGA 59.987 40.000 0.00 0.00 0.00 3.02
183 184 5.245531 TGGACAGTTAGTGGATAAAGCTTG 58.754 41.667 0.00 0.00 0.00 4.01
184 185 5.013183 ACTGGACAGTTAGTGGATAAAGCTT 59.987 40.000 0.00 0.00 38.83 3.74
185 186 4.532521 ACTGGACAGTTAGTGGATAAAGCT 59.467 41.667 0.00 0.00 38.83 3.74
186 187 4.833390 ACTGGACAGTTAGTGGATAAAGC 58.167 43.478 0.00 0.00 38.83 3.51
189 190 8.148351 GCATATTACTGGACAGTTAGTGGATAA 58.852 37.037 10.57 0.00 42.54 1.75
190 191 7.289084 TGCATATTACTGGACAGTTAGTGGATA 59.711 37.037 10.57 1.81 42.54 2.59
191 192 6.099701 TGCATATTACTGGACAGTTAGTGGAT 59.900 38.462 10.57 0.00 42.54 3.41
192 193 5.423931 TGCATATTACTGGACAGTTAGTGGA 59.576 40.000 10.57 3.96 42.54 4.02
193 194 5.670485 TGCATATTACTGGACAGTTAGTGG 58.330 41.667 10.57 0.29 42.54 4.00
194 195 7.306807 CGATTGCATATTACTGGACAGTTAGTG 60.307 40.741 10.57 6.33 42.54 2.74
195 196 6.701841 CGATTGCATATTACTGGACAGTTAGT 59.298 38.462 10.57 0.40 42.54 2.24
196 197 6.701841 ACGATTGCATATTACTGGACAGTTAG 59.298 38.462 10.57 0.00 42.54 2.34
197 198 6.478673 CACGATTGCATATTACTGGACAGTTA 59.521 38.462 10.57 1.62 42.54 2.24
198 199 5.294306 CACGATTGCATATTACTGGACAGTT 59.706 40.000 10.57 0.00 42.54 3.16
199 200 4.811024 CACGATTGCATATTACTGGACAGT 59.189 41.667 10.15 10.15 45.02 3.55
200 201 4.811024 ACACGATTGCATATTACTGGACAG 59.189 41.667 0.00 0.00 0.00 3.51
201 202 4.765273 ACACGATTGCATATTACTGGACA 58.235 39.130 0.00 0.00 0.00 4.02
202 203 5.734855 AACACGATTGCATATTACTGGAC 57.265 39.130 0.00 0.00 0.00 4.02
203 204 5.460748 CGTAACACGATTGCATATTACTGGA 59.539 40.000 0.00 0.00 46.05 3.86
204 205 5.233476 ACGTAACACGATTGCATATTACTGG 59.767 40.000 5.61 0.00 46.05 4.00
205 206 6.268797 ACGTAACACGATTGCATATTACTG 57.731 37.500 5.61 0.00 46.05 2.74
206 207 7.198390 ACTACGTAACACGATTGCATATTACT 58.802 34.615 5.61 0.00 46.05 2.24
207 208 7.385668 ACTACGTAACACGATTGCATATTAC 57.614 36.000 5.61 0.00 46.05 1.89
208 209 7.591057 GGTACTACGTAACACGATTGCATATTA 59.409 37.037 5.61 0.00 46.05 0.98
209 210 6.418819 GGTACTACGTAACACGATTGCATATT 59.581 38.462 5.61 0.00 46.05 1.28
210 211 5.916883 GGTACTACGTAACACGATTGCATAT 59.083 40.000 5.61 0.00 46.05 1.78
211 212 5.163673 TGGTACTACGTAACACGATTGCATA 60.164 40.000 5.61 0.00 46.05 3.14
212 213 4.107622 GGTACTACGTAACACGATTGCAT 58.892 43.478 5.61 0.00 46.05 3.96
213 214 3.057666 TGGTACTACGTAACACGATTGCA 60.058 43.478 5.61 0.00 46.05 4.08
214 215 3.500982 TGGTACTACGTAACACGATTGC 58.499 45.455 5.61 0.00 46.05 3.56
215 216 6.636666 ATTTGGTACTACGTAACACGATTG 57.363 37.500 5.61 0.00 46.05 2.67
216 217 7.360269 CCAAATTTGGTACTACGTAACACGATT 60.360 37.037 26.34 0.00 43.04 3.34
217 218 6.091169 CCAAATTTGGTACTACGTAACACGAT 59.909 38.462 26.34 0.00 43.04 3.73
218 219 5.404968 CCAAATTTGGTACTACGTAACACGA 59.595 40.000 26.34 0.00 43.04 4.35
219 220 5.610975 CCAAATTTGGTACTACGTAACACG 58.389 41.667 26.34 0.00 44.57 4.49
254 255 9.695526 CCAGAAGTCAAAATTCAATCATGTAAA 57.304 29.630 0.00 0.00 0.00 2.01
255 256 9.076781 TCCAGAAGTCAAAATTCAATCATGTAA 57.923 29.630 0.00 0.00 0.00 2.41
256 257 8.634335 TCCAGAAGTCAAAATTCAATCATGTA 57.366 30.769 0.00 0.00 0.00 2.29
257 258 7.528996 TCCAGAAGTCAAAATTCAATCATGT 57.471 32.000 0.00 0.00 0.00 3.21
258 259 8.821147 TTTCCAGAAGTCAAAATTCAATCATG 57.179 30.769 0.00 0.00 0.00 3.07
260 261 9.835389 AATTTTCCAGAAGTCAAAATTCAATCA 57.165 25.926 0.00 0.00 35.69 2.57
262 263 9.617523 ACAATTTTCCAGAAGTCAAAATTCAAT 57.382 25.926 0.00 0.00 37.53 2.57
263 264 8.881743 CACAATTTTCCAGAAGTCAAAATTCAA 58.118 29.630 0.00 0.00 37.53 2.69
264 265 7.495279 CCACAATTTTCCAGAAGTCAAAATTCA 59.505 33.333 0.00 0.00 37.53 2.57
265 266 7.710475 TCCACAATTTTCCAGAAGTCAAAATTC 59.290 33.333 0.00 0.00 37.53 2.17
266 267 7.563906 TCCACAATTTTCCAGAAGTCAAAATT 58.436 30.769 0.00 0.00 39.29 1.82
267 268 7.123355 TCCACAATTTTCCAGAAGTCAAAAT 57.877 32.000 0.00 0.00 32.30 1.82
268 269 6.537453 TCCACAATTTTCCAGAAGTCAAAA 57.463 33.333 0.00 0.00 0.00 2.44
269 270 6.729690 ATCCACAATTTTCCAGAAGTCAAA 57.270 33.333 0.00 0.00 0.00 2.69
270 271 6.514947 CAATCCACAATTTTCCAGAAGTCAA 58.485 36.000 0.00 0.00 0.00 3.18
271 272 5.509501 GCAATCCACAATTTTCCAGAAGTCA 60.510 40.000 0.00 0.00 0.00 3.41
272 273 4.925646 GCAATCCACAATTTTCCAGAAGTC 59.074 41.667 0.00 0.00 0.00 3.01
273 274 4.262592 GGCAATCCACAATTTTCCAGAAGT 60.263 41.667 0.00 0.00 0.00 3.01
274 275 4.248058 GGCAATCCACAATTTTCCAGAAG 58.752 43.478 0.00 0.00 0.00 2.85
275 276 3.645212 TGGCAATCCACAATTTTCCAGAA 59.355 39.130 0.00 0.00 37.47 3.02
276 277 3.237746 TGGCAATCCACAATTTTCCAGA 58.762 40.909 0.00 0.00 37.47 3.86
277 278 3.681593 TGGCAATCCACAATTTTCCAG 57.318 42.857 0.00 0.00 37.47 3.86
278 279 3.368220 CGATGGCAATCCACAATTTTCCA 60.368 43.478 0.00 0.00 46.92 3.53
279 280 3.189285 CGATGGCAATCCACAATTTTCC 58.811 45.455 0.00 0.00 46.92 3.13
280 281 3.119173 TCCGATGGCAATCCACAATTTTC 60.119 43.478 0.00 0.00 46.92 2.29
281 282 2.830923 TCCGATGGCAATCCACAATTTT 59.169 40.909 0.00 0.00 46.92 1.82
282 283 2.455557 TCCGATGGCAATCCACAATTT 58.544 42.857 0.00 0.00 46.92 1.82
283 284 2.142356 TCCGATGGCAATCCACAATT 57.858 45.000 0.00 0.00 46.92 2.32
284 285 1.958579 CATCCGATGGCAATCCACAAT 59.041 47.619 0.00 0.00 46.92 2.71
285 286 1.340893 ACATCCGATGGCAATCCACAA 60.341 47.619 13.00 0.00 46.92 3.33
286 287 0.255604 ACATCCGATGGCAATCCACA 59.744 50.000 13.00 0.00 46.92 4.17
287 288 0.947244 GACATCCGATGGCAATCCAC 59.053 55.000 9.53 0.00 46.92 4.02
289 290 1.071385 AGAGACATCCGATGGCAATCC 59.929 52.381 16.76 2.88 42.15 3.01
290 291 2.036992 AGAGAGACATCCGATGGCAATC 59.963 50.000 16.76 12.74 42.15 2.67
291 292 2.045524 AGAGAGACATCCGATGGCAAT 58.954 47.619 16.76 3.98 42.15 3.56
292 293 1.489481 AGAGAGACATCCGATGGCAA 58.511 50.000 16.76 0.00 42.15 4.52
293 294 1.489481 AAGAGAGACATCCGATGGCA 58.511 50.000 16.76 0.00 42.15 4.92
294 295 2.887783 TCTAAGAGAGACATCCGATGGC 59.112 50.000 13.00 9.83 39.09 4.40
305 306 2.093816 TCGCGGTGTAGTCTAAGAGAGA 60.094 50.000 6.13 0.00 0.00 3.10
306 307 2.030701 GTCGCGGTGTAGTCTAAGAGAG 59.969 54.545 6.13 0.00 0.00 3.20
307 308 2.005451 GTCGCGGTGTAGTCTAAGAGA 58.995 52.381 6.13 0.00 0.00 3.10
308 309 1.736126 TGTCGCGGTGTAGTCTAAGAG 59.264 52.381 6.13 0.00 0.00 2.85
309 310 1.736126 CTGTCGCGGTGTAGTCTAAGA 59.264 52.381 6.13 0.00 0.00 2.10
310 311 1.467734 ACTGTCGCGGTGTAGTCTAAG 59.532 52.381 6.13 0.00 0.00 2.18
311 312 1.466167 GACTGTCGCGGTGTAGTCTAA 59.534 52.381 6.13 0.00 37.25 2.10
312 313 1.081892 GACTGTCGCGGTGTAGTCTA 58.918 55.000 6.13 0.00 37.25 2.59
313 314 0.887836 TGACTGTCGCGGTGTAGTCT 60.888 55.000 23.01 0.78 40.07 3.24
314 315 0.170561 ATGACTGTCGCGGTGTAGTC 59.829 55.000 18.93 18.93 39.88 2.59
315 316 0.170561 GATGACTGTCGCGGTGTAGT 59.829 55.000 6.13 5.69 0.00 2.73
316 317 0.525668 GGATGACTGTCGCGGTGTAG 60.526 60.000 6.13 2.10 0.00 2.74
317 318 1.509463 GGATGACTGTCGCGGTGTA 59.491 57.895 6.13 0.00 0.00 2.90
318 319 2.261671 GGATGACTGTCGCGGTGT 59.738 61.111 6.13 2.29 0.00 4.16
319 320 2.880879 CGGATGACTGTCGCGGTG 60.881 66.667 6.13 0.00 0.00 4.94
320 321 3.060000 TCGGATGACTGTCGCGGT 61.060 61.111 6.13 0.00 0.00 5.68
321 322 2.579787 GTCGGATGACTGTCGCGG 60.580 66.667 6.13 2.95 42.08 6.46
322 323 2.579787 GGTCGGATGACTGTCGCG 60.580 66.667 0.00 0.00 44.83 5.87
323 324 1.517257 CAGGTCGGATGACTGTCGC 60.517 63.158 2.98 0.00 44.83 5.19
324 325 1.517257 GCAGGTCGGATGACTGTCG 60.517 63.158 2.98 0.00 44.83 4.35
325 326 1.517257 CGCAGGTCGGATGACTGTC 60.517 63.158 0.00 0.00 44.83 3.51
326 327 2.573869 CGCAGGTCGGATGACTGT 59.426 61.111 8.43 0.00 44.83 3.55
339 340 2.932130 GAAAGGGAGCTAGGCCGCAG 62.932 65.000 5.37 4.24 0.00 5.18
340 341 3.009115 AAAGGGAGCTAGGCCGCA 61.009 61.111 5.37 0.00 0.00 5.69
341 342 2.203084 GAAAGGGAGCTAGGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
342 343 1.443828 GAGAAAGGGAGCTAGGCCG 59.556 63.158 0.00 0.00 0.00 6.13
343 344 0.692756 AGGAGAAAGGGAGCTAGGCC 60.693 60.000 0.00 0.00 0.00 5.19
344 345 0.756294 GAGGAGAAAGGGAGCTAGGC 59.244 60.000 0.00 0.00 0.00 3.93
345 346 1.343478 TGGAGGAGAAAGGGAGCTAGG 60.343 57.143 0.00 0.00 0.00 3.02
346 347 1.760029 GTGGAGGAGAAAGGGAGCTAG 59.240 57.143 0.00 0.00 0.00 3.42
347 348 1.362932 AGTGGAGGAGAAAGGGAGCTA 59.637 52.381 0.00 0.00 0.00 3.32
348 349 0.118144 AGTGGAGGAGAAAGGGAGCT 59.882 55.000 0.00 0.00 0.00 4.09
349 350 0.539518 GAGTGGAGGAGAAAGGGAGC 59.460 60.000 0.00 0.00 0.00 4.70
350 351 2.107366 GAGAGTGGAGGAGAAAGGGAG 58.893 57.143 0.00 0.00 0.00 4.30
351 352 1.273324 GGAGAGTGGAGGAGAAAGGGA 60.273 57.143 0.00 0.00 0.00 4.20
352 353 1.199615 GGAGAGTGGAGGAGAAAGGG 58.800 60.000 0.00 0.00 0.00 3.95
353 354 1.944177 TGGAGAGTGGAGGAGAAAGG 58.056 55.000 0.00 0.00 0.00 3.11
354 355 2.100584 CGATGGAGAGTGGAGGAGAAAG 59.899 54.545 0.00 0.00 0.00 2.62
355 356 2.103373 CGATGGAGAGTGGAGGAGAAA 58.897 52.381 0.00 0.00 0.00 2.52
356 357 1.769026 CGATGGAGAGTGGAGGAGAA 58.231 55.000 0.00 0.00 0.00 2.87
357 358 0.753479 GCGATGGAGAGTGGAGGAGA 60.753 60.000 0.00 0.00 0.00 3.71
358 359 1.739049 GCGATGGAGAGTGGAGGAG 59.261 63.158 0.00 0.00 0.00 3.69
359 360 1.758514 GGCGATGGAGAGTGGAGGA 60.759 63.158 0.00 0.00 0.00 3.71
360 361 2.818132 GGCGATGGAGAGTGGAGG 59.182 66.667 0.00 0.00 0.00 4.30
361 362 2.343163 GACGGCGATGGAGAGTGGAG 62.343 65.000 16.62 0.00 0.00 3.86
362 363 2.362503 ACGGCGATGGAGAGTGGA 60.363 61.111 16.62 0.00 0.00 4.02
363 364 2.105128 GACGGCGATGGAGAGTGG 59.895 66.667 16.62 0.00 0.00 4.00
364 365 2.278206 CGACGGCGATGGAGAGTG 60.278 66.667 16.62 0.00 40.82 3.51
365 366 3.518998 CCGACGGCGATGGAGAGT 61.519 66.667 15.16 0.00 40.82 3.24
366 367 4.933064 GCCGACGGCGATGGAGAG 62.933 72.222 25.24 0.00 39.62 3.20
383 384 2.606308 GCCAACTGTCATGCAACTCTTG 60.606 50.000 0.00 0.00 0.00 3.02
384 385 1.610522 GCCAACTGTCATGCAACTCTT 59.389 47.619 0.00 0.00 0.00 2.85
385 386 1.242076 GCCAACTGTCATGCAACTCT 58.758 50.000 0.00 0.00 0.00 3.24
386 387 0.110056 CGCCAACTGTCATGCAACTC 60.110 55.000 0.00 0.00 0.00 3.01
387 388 1.951510 CGCCAACTGTCATGCAACT 59.048 52.632 0.00 0.00 0.00 3.16
388 389 1.730547 GCGCCAACTGTCATGCAAC 60.731 57.895 0.00 0.00 0.00 4.17
389 390 2.644418 GCGCCAACTGTCATGCAA 59.356 55.556 0.00 0.00 0.00 4.08
390 391 3.364441 GGCGCCAACTGTCATGCA 61.364 61.111 24.80 0.00 0.00 3.96
391 392 4.465512 CGGCGCCAACTGTCATGC 62.466 66.667 28.98 0.00 0.00 4.06
392 393 3.803082 CCGGCGCCAACTGTCATG 61.803 66.667 28.98 6.19 0.00 3.07
405 406 2.088674 ATACCGAGATGTCTGCCGGC 62.089 60.000 22.73 22.73 45.29 6.13
406 407 1.200252 CTATACCGAGATGTCTGCCGG 59.800 57.143 0.00 0.00 46.65 6.13
407 408 2.152016 TCTATACCGAGATGTCTGCCG 58.848 52.381 0.00 0.00 0.00 5.69
408 409 4.336993 CCTATCTATACCGAGATGTCTGCC 59.663 50.000 0.00 0.00 36.80 4.85
409 410 5.186942 TCCTATCTATACCGAGATGTCTGC 58.813 45.833 0.00 0.00 36.80 4.26
410 411 7.051000 TGATCCTATCTATACCGAGATGTCTG 58.949 42.308 0.00 0.00 36.80 3.51
411 412 7.092623 ACTGATCCTATCTATACCGAGATGTCT 60.093 40.741 0.00 0.00 36.80 3.41
412 413 7.051623 ACTGATCCTATCTATACCGAGATGTC 58.948 42.308 0.00 0.00 36.80 3.06
413 414 6.964464 ACTGATCCTATCTATACCGAGATGT 58.036 40.000 0.00 0.00 36.80 3.06
414 415 8.425703 TCTACTGATCCTATCTATACCGAGATG 58.574 40.741 0.00 0.00 36.80 2.90
415 416 8.555896 TCTACTGATCCTATCTATACCGAGAT 57.444 38.462 0.00 0.00 39.54 2.75
416 417 7.070198 CCTCTACTGATCCTATCTATACCGAGA 59.930 44.444 0.00 0.00 0.00 4.04
417 418 7.214381 CCTCTACTGATCCTATCTATACCGAG 58.786 46.154 0.00 0.00 0.00 4.63
418 419 6.408320 GCCTCTACTGATCCTATCTATACCGA 60.408 46.154 0.00 0.00 0.00 4.69
419 420 5.761234 GCCTCTACTGATCCTATCTATACCG 59.239 48.000 0.00 0.00 0.00 4.02
420 421 6.906848 AGCCTCTACTGATCCTATCTATACC 58.093 44.000 0.00 0.00 0.00 2.73
421 422 7.201785 GCAAGCCTCTACTGATCCTATCTATAC 60.202 44.444 0.00 0.00 0.00 1.47
422 423 6.831353 GCAAGCCTCTACTGATCCTATCTATA 59.169 42.308 0.00 0.00 0.00 1.31
423 424 5.656416 GCAAGCCTCTACTGATCCTATCTAT 59.344 44.000 0.00 0.00 0.00 1.98
424 425 5.013547 GCAAGCCTCTACTGATCCTATCTA 58.986 45.833 0.00 0.00 0.00 1.98
425 426 3.831911 GCAAGCCTCTACTGATCCTATCT 59.168 47.826 0.00 0.00 0.00 1.98
426 427 3.576118 TGCAAGCCTCTACTGATCCTATC 59.424 47.826 0.00 0.00 0.00 2.08
427 428 3.577848 CTGCAAGCCTCTACTGATCCTAT 59.422 47.826 0.00 0.00 0.00 2.57
428 429 2.961741 CTGCAAGCCTCTACTGATCCTA 59.038 50.000 0.00 0.00 0.00 2.94
429 430 1.761784 CTGCAAGCCTCTACTGATCCT 59.238 52.381 0.00 0.00 0.00 3.24
430 431 1.202627 CCTGCAAGCCTCTACTGATCC 60.203 57.143 0.00 0.00 0.00 3.36
431 432 1.759445 TCCTGCAAGCCTCTACTGATC 59.241 52.381 0.00 0.00 0.00 2.92
432 433 1.761784 CTCCTGCAAGCCTCTACTGAT 59.238 52.381 0.00 0.00 0.00 2.90
433 434 1.189752 CTCCTGCAAGCCTCTACTGA 58.810 55.000 0.00 0.00 0.00 3.41
434 435 0.461693 GCTCCTGCAAGCCTCTACTG 60.462 60.000 0.00 0.00 39.41 2.74
435 436 0.617249 AGCTCCTGCAAGCCTCTACT 60.617 55.000 6.77 0.00 43.56 2.57
436 437 0.251634 AAGCTCCTGCAAGCCTCTAC 59.748 55.000 6.77 0.00 43.56 2.59
437 438 1.759445 CTAAGCTCCTGCAAGCCTCTA 59.241 52.381 6.77 0.00 43.56 2.43
438 439 0.540923 CTAAGCTCCTGCAAGCCTCT 59.459 55.000 6.77 0.00 43.56 3.69
439 440 0.539051 TCTAAGCTCCTGCAAGCCTC 59.461 55.000 6.77 0.00 43.56 4.70
440 441 0.987294 TTCTAAGCTCCTGCAAGCCT 59.013 50.000 6.77 0.00 43.56 4.58
441 442 1.065854 TCTTCTAAGCTCCTGCAAGCC 60.066 52.381 6.77 0.00 43.56 4.35
442 443 2.278854 CTCTTCTAAGCTCCTGCAAGC 58.721 52.381 1.95 1.95 42.74 4.01
443 444 2.419851 CCCTCTTCTAAGCTCCTGCAAG 60.420 54.545 0.00 0.00 42.74 4.01
444 445 1.556911 CCCTCTTCTAAGCTCCTGCAA 59.443 52.381 0.00 0.00 42.74 4.08
445 446 1.198713 CCCTCTTCTAAGCTCCTGCA 58.801 55.000 0.00 0.00 42.74 4.41
446 447 1.412343 CTCCCTCTTCTAAGCTCCTGC 59.588 57.143 0.00 0.00 40.05 4.85
447 448 1.412343 GCTCCCTCTTCTAAGCTCCTG 59.588 57.143 0.00 0.00 0.00 3.86
448 449 1.290732 AGCTCCCTCTTCTAAGCTCCT 59.709 52.381 0.00 0.00 41.05 3.69
449 450 1.788229 AGCTCCCTCTTCTAAGCTCC 58.212 55.000 0.00 0.00 41.05 4.70
450 451 2.890945 CCTAGCTCCCTCTTCTAAGCTC 59.109 54.545 0.00 0.00 43.72 4.09
451 452 2.425683 CCCTAGCTCCCTCTTCTAAGCT 60.426 54.545 0.00 1.02 46.35 3.74
452 453 1.967779 CCCTAGCTCCCTCTTCTAAGC 59.032 57.143 0.00 0.00 34.95 3.09
453 454 1.967779 GCCCTAGCTCCCTCTTCTAAG 59.032 57.143 0.00 0.00 35.50 2.18
454 455 1.291033 TGCCCTAGCTCCCTCTTCTAA 59.709 52.381 0.00 0.00 40.80 2.10
455 456 0.934446 TGCCCTAGCTCCCTCTTCTA 59.066 55.000 0.00 0.00 40.80 2.10
456 457 0.267356 ATGCCCTAGCTCCCTCTTCT 59.733 55.000 0.00 0.00 40.80 2.85
457 458 0.684535 GATGCCCTAGCTCCCTCTTC 59.315 60.000 0.00 0.00 40.80 2.87
458 459 0.267356 AGATGCCCTAGCTCCCTCTT 59.733 55.000 0.00 0.00 40.80 2.85
459 460 0.267356 AAGATGCCCTAGCTCCCTCT 59.733 55.000 0.00 0.00 40.80 3.69
460 461 0.684535 GAAGATGCCCTAGCTCCCTC 59.315 60.000 0.00 0.00 40.80 4.30
461 462 0.030705 TGAAGATGCCCTAGCTCCCT 60.031 55.000 0.00 0.00 40.80 4.20
462 463 0.839946 TTGAAGATGCCCTAGCTCCC 59.160 55.000 0.00 0.00 40.80 4.30
463 464 1.808133 CGTTGAAGATGCCCTAGCTCC 60.808 57.143 0.00 0.00 40.80 4.70
464 465 1.576356 CGTTGAAGATGCCCTAGCTC 58.424 55.000 0.00 0.00 40.80 4.09
465 466 0.462759 GCGTTGAAGATGCCCTAGCT 60.463 55.000 0.00 0.00 40.80 3.32
466 467 2.017752 GCGTTGAAGATGCCCTAGC 58.982 57.895 0.00 0.00 40.48 3.42
472 473 1.298859 AAGGTCGGCGTTGAAGATGC 61.299 55.000 6.85 0.00 39.65 3.91
473 474 0.721718 GAAGGTCGGCGTTGAAGATG 59.278 55.000 6.85 0.00 0.00 2.90
474 475 0.320374 TGAAGGTCGGCGTTGAAGAT 59.680 50.000 6.85 0.00 0.00 2.40
475 476 0.105224 TTGAAGGTCGGCGTTGAAGA 59.895 50.000 6.85 0.00 0.00 2.87
476 477 0.941542 TTTGAAGGTCGGCGTTGAAG 59.058 50.000 6.85 0.00 0.00 3.02
477 478 1.064357 GTTTTGAAGGTCGGCGTTGAA 59.936 47.619 6.85 0.00 0.00 2.69
478 479 0.658897 GTTTTGAAGGTCGGCGTTGA 59.341 50.000 6.85 0.00 0.00 3.18
479 480 0.378962 TGTTTTGAAGGTCGGCGTTG 59.621 50.000 6.85 0.00 0.00 4.10
480 481 0.661020 CTGTTTTGAAGGTCGGCGTT 59.339 50.000 6.85 0.00 0.00 4.84
481 482 0.179067 TCTGTTTTGAAGGTCGGCGT 60.179 50.000 6.85 0.00 0.00 5.68
482 483 0.234884 GTCTGTTTTGAAGGTCGGCG 59.765 55.000 0.00 0.00 0.00 6.46
483 484 0.591659 GGTCTGTTTTGAAGGTCGGC 59.408 55.000 0.00 0.00 0.00 5.54
484 485 1.235724 GGGTCTGTTTTGAAGGTCGG 58.764 55.000 0.00 0.00 0.00 4.79
485 486 1.961793 TGGGTCTGTTTTGAAGGTCG 58.038 50.000 0.00 0.00 0.00 4.79
486 487 6.590234 AATAATGGGTCTGTTTTGAAGGTC 57.410 37.500 0.00 0.00 0.00 3.85
487 488 6.326323 ACAAATAATGGGTCTGTTTTGAAGGT 59.674 34.615 0.00 0.00 0.00 3.50
488 489 6.758254 ACAAATAATGGGTCTGTTTTGAAGG 58.242 36.000 0.00 0.00 0.00 3.46
489 490 6.868339 GGACAAATAATGGGTCTGTTTTGAAG 59.132 38.462 0.00 0.00 0.00 3.02
490 491 6.515862 CGGACAAATAATGGGTCTGTTTTGAA 60.516 38.462 0.00 0.00 34.11 2.69
491 492 5.048364 CGGACAAATAATGGGTCTGTTTTGA 60.048 40.000 0.00 0.00 34.11 2.69
492 493 5.160641 CGGACAAATAATGGGTCTGTTTTG 58.839 41.667 0.00 0.00 34.11 2.44
493 494 4.830600 ACGGACAAATAATGGGTCTGTTTT 59.169 37.500 0.00 0.00 46.10 2.43
494 495 4.217550 CACGGACAAATAATGGGTCTGTTT 59.782 41.667 2.93 0.00 46.10 2.83
495 496 3.756434 CACGGACAAATAATGGGTCTGTT 59.244 43.478 2.93 0.00 46.10 3.16
496 497 3.713826 ACGGACAAATAATGGGTCTGT 57.286 42.857 0.00 0.00 44.14 3.41
497 498 2.682856 CCACGGACAAATAATGGGTCTG 59.317 50.000 0.00 0.00 42.30 3.51
498 499 2.574369 TCCACGGACAAATAATGGGTCT 59.426 45.455 0.00 0.00 0.00 3.85
499 500 2.681344 GTCCACGGACAAATAATGGGTC 59.319 50.000 11.43 0.00 44.02 4.46
500 501 2.718563 GTCCACGGACAAATAATGGGT 58.281 47.619 11.43 0.00 44.02 4.51
501 502 1.668751 CGTCCACGGACAAATAATGGG 59.331 52.381 16.23 0.00 44.77 4.00
502 503 1.063469 GCGTCCACGGACAAATAATGG 59.937 52.381 16.23 0.00 44.77 3.16
503 504 1.267334 CGCGTCCACGGACAAATAATG 60.267 52.381 16.23 0.00 44.77 1.90
504 505 1.003851 CGCGTCCACGGACAAATAAT 58.996 50.000 16.23 0.00 44.77 1.28
505 506 2.447408 CGCGTCCACGGACAAATAA 58.553 52.632 16.23 0.00 44.77 1.40
506 507 4.172346 CGCGTCCACGGACAAATA 57.828 55.556 16.23 0.00 44.77 1.40
514 515 2.278596 CCTGTATCCGCGTCCACG 60.279 66.667 4.92 0.00 43.27 4.94
515 516 2.106332 CCCTGTATCCGCGTCCAC 59.894 66.667 4.92 0.00 0.00 4.02
516 517 0.683828 TAACCCTGTATCCGCGTCCA 60.684 55.000 4.92 0.00 0.00 4.02
517 518 0.677842 ATAACCCTGTATCCGCGTCC 59.322 55.000 4.92 0.00 0.00 4.79
518 519 2.223876 TGAATAACCCTGTATCCGCGTC 60.224 50.000 4.92 0.00 0.00 5.19
519 520 1.758280 TGAATAACCCTGTATCCGCGT 59.242 47.619 4.92 0.00 0.00 6.01
520 521 2.519377 TGAATAACCCTGTATCCGCG 57.481 50.000 0.00 0.00 0.00 6.46
532 533 1.005450 TGGAGGGCAGGGTTGAATAAC 59.995 52.381 0.00 0.00 36.04 1.89
533 534 1.377690 TGGAGGGCAGGGTTGAATAA 58.622 50.000 0.00 0.00 0.00 1.40
534 535 1.005450 GTTGGAGGGCAGGGTTGAATA 59.995 52.381 0.00 0.00 0.00 1.75
535 536 0.251787 GTTGGAGGGCAGGGTTGAAT 60.252 55.000 0.00 0.00 0.00 2.57
536 537 1.152830 GTTGGAGGGCAGGGTTGAA 59.847 57.895 0.00 0.00 0.00 2.69
537 538 1.434513 ATGTTGGAGGGCAGGGTTGA 61.435 55.000 0.00 0.00 0.00 3.18
538 539 0.542702 AATGTTGGAGGGCAGGGTTG 60.543 55.000 0.00 0.00 0.00 3.77
539 540 0.251787 GAATGTTGGAGGGCAGGGTT 60.252 55.000 0.00 0.00 0.00 4.11
540 541 1.384191 GAATGTTGGAGGGCAGGGT 59.616 57.895 0.00 0.00 0.00 4.34
541 542 1.750399 CGAATGTTGGAGGGCAGGG 60.750 63.158 0.00 0.00 0.00 4.45
542 543 0.609131 AACGAATGTTGGAGGGCAGG 60.609 55.000 0.00 0.00 36.81 4.85
543 544 1.247567 AAACGAATGTTGGAGGGCAG 58.752 50.000 0.00 0.00 38.62 4.85
544 545 1.698506 AAAACGAATGTTGGAGGGCA 58.301 45.000 0.00 0.00 38.62 5.36
545 546 2.812358 AAAAACGAATGTTGGAGGGC 57.188 45.000 0.00 0.00 38.62 5.19
546 547 7.722795 AAAAATAAAAACGAATGTTGGAGGG 57.277 32.000 0.00 0.00 38.62 4.30
547 548 8.921670 CCTAAAAATAAAAACGAATGTTGGAGG 58.078 33.333 0.00 0.00 38.62 4.30
548 549 8.921670 CCCTAAAAATAAAAACGAATGTTGGAG 58.078 33.333 0.00 0.00 38.62 3.86
549 550 7.385478 GCCCTAAAAATAAAAACGAATGTTGGA 59.615 33.333 0.00 0.00 38.62 3.53
550 551 7.386573 AGCCCTAAAAATAAAAACGAATGTTGG 59.613 33.333 0.00 0.00 38.62 3.77
551 552 8.305441 AGCCCTAAAAATAAAAACGAATGTTG 57.695 30.769 0.00 0.00 38.62 3.33
552 553 9.984190 TTAGCCCTAAAAATAAAAACGAATGTT 57.016 25.926 0.00 0.00 40.98 2.71
881 882 3.680786 CTCTCGCCGTGGTCACCA 61.681 66.667 0.00 0.00 0.00 4.17
1378 1383 0.319383 CTCTGTCAGTGCGTGCTTCT 60.319 55.000 0.00 0.00 0.00 2.85
2244 2249 6.695624 TGTATACCTTCTTTCCCTACCCATA 58.304 40.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.