Multiple sequence alignment - TraesCS7B01G152300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G152300 chr7B 100.000 4108 0 0 1 4108 202504903 202509010 0.000000e+00 7587.0
1 TraesCS7B01G152300 chr7B 86.628 516 45 11 21 519 578120092 578119584 2.160000e-152 549.0
2 TraesCS7B01G152300 chr7B 83.022 536 65 20 1 521 718954825 718954301 2.890000e-126 462.0
3 TraesCS7B01G152300 chr7B 97.041 169 5 0 518 686 534818576 534818744 6.720000e-73 285.0
4 TraesCS7B01G152300 chr7B 94.536 183 10 0 2617 2799 203280551 203280369 2.420000e-72 283.0
5 TraesCS7B01G152300 chr7B 96.491 171 6 0 513 683 500023187 500023017 2.420000e-72 283.0
6 TraesCS7B01G152300 chr7B 77.079 445 72 20 764 1195 203282773 203282346 3.190000e-56 230.0
7 TraesCS7B01G152300 chr7D 90.726 1639 97 25 722 2326 230992749 230994366 0.000000e+00 2134.0
8 TraesCS7B01G152300 chr7D 91.996 1062 60 6 2356 3414 230994739 230995778 0.000000e+00 1467.0
9 TraesCS7B01G152300 chr7D 84.211 494 50 21 43 519 556212085 556211603 4.840000e-124 455.0
10 TraesCS7B01G152300 chr7D 94.536 183 10 0 2617 2799 232497311 232497129 2.420000e-72 283.0
11 TraesCS7B01G152300 chr7D 77.232 448 70 19 763 1196 232498870 232498441 2.470000e-57 233.0
12 TraesCS7B01G152300 chr7D 94.737 95 2 2 3896 3987 230997857 230997951 1.190000e-30 145.0
13 TraesCS7B01G152300 chr7A 93.220 1062 34 9 2356 3412 243853415 243854443 0.000000e+00 1528.0
14 TraesCS7B01G152300 chr7A 90.925 1157 64 21 722 1852 243852203 243853344 0.000000e+00 1517.0
15 TraesCS7B01G152300 chr7A 89.409 406 37 4 3464 3866 10021231 10020829 1.320000e-139 507.0
16 TraesCS7B01G152300 chr7A 94.536 183 10 0 2617 2799 244670914 244670732 2.420000e-72 283.0
17 TraesCS7B01G152300 chr7A 80.117 342 45 16 763 1093 244672498 244672169 2.470000e-57 233.0
18 TraesCS7B01G152300 chr2B 86.034 537 55 12 1 519 725812859 725812325 3.590000e-155 558.0
19 TraesCS7B01G152300 chr2B 87.013 462 45 13 1 453 73997379 73996924 1.320000e-139 507.0
20 TraesCS7B01G152300 chr2B 98.193 166 3 0 518 683 246361987 246361822 1.440000e-74 291.0
21 TraesCS7B01G152300 chr2B 96.471 170 6 0 513 682 182011105 182011274 8.690000e-72 281.0
22 TraesCS7B01G152300 chr2B 94.444 180 8 2 503 682 232243560 232243383 4.040000e-70 276.0
23 TraesCS7B01G152300 chr2B 88.710 124 14 0 3985 4108 383291217 383291094 7.110000e-33 152.0
24 TraesCS7B01G152300 chr2B 87.234 94 10 1 2041 2132 306886211 306886118 5.620000e-19 106.0
25 TraesCS7B01G152300 chr3B 86.513 519 46 13 20 519 146297296 146296783 2.160000e-152 549.0
26 TraesCS7B01G152300 chr3B 82.231 529 65 20 1 516 23416847 23417359 2.930000e-116 429.0
27 TraesCS7B01G152300 chr3B 98.182 165 3 0 518 682 599893911 599893747 5.200000e-74 289.0
28 TraesCS7B01G152300 chr3B 89.600 125 13 0 3984 4108 2155496 2155620 4.250000e-35 159.0
29 TraesCS7B01G152300 chr3B 89.344 122 13 0 3987 4108 454869451 454869572 1.980000e-33 154.0
30 TraesCS7B01G152300 chr3B 87.500 128 15 1 3982 4108 782819512 782819385 3.310000e-31 147.0
31 TraesCS7B01G152300 chr5B 86.693 511 47 15 22 519 524415773 524415271 7.760000e-152 547.0
32 TraesCS7B01G152300 chr5B 87.010 408 44 7 3465 3866 372162424 372162020 6.260000e-123 451.0
33 TraesCS7B01G152300 chr5B 82.420 529 68 18 1 519 522600476 522600989 4.880000e-119 438.0
34 TraesCS7B01G152300 chr5B 94.944 178 8 1 509 686 660863520 660863344 1.120000e-70 278.0
35 TraesCS7B01G152300 chr5B 94.944 178 8 1 509 686 660912124 660911948 1.120000e-70 278.0
36 TraesCS7B01G152300 chr5B 91.758 182 15 0 2617 2798 464364703 464364522 1.900000e-63 254.0
37 TraesCS7B01G152300 chr5B 90.984 122 11 0 3987 4108 659180814 659180935 9.140000e-37 165.0
38 TraesCS7B01G152300 chr5B 88.710 124 14 0 3985 4108 673382150 673382027 7.110000e-33 152.0
39 TraesCS7B01G152300 chr5B 85.000 100 13 1 2034 2131 403708738 403708639 2.610000e-17 100.0
40 TraesCS7B01G152300 chr4B 85.502 538 54 15 1 519 314789596 314789064 1.300000e-149 540.0
41 TraesCS7B01G152300 chr4B 97.059 170 5 0 514 683 20487359 20487528 1.870000e-73 287.0
42 TraesCS7B01G152300 chr4B 97.059 170 5 0 514 683 342749783 342749614 1.870000e-73 287.0
43 TraesCS7B01G152300 chr4A 85.409 514 51 15 23 516 608474130 608474639 2.830000e-141 512.0
44 TraesCS7B01G152300 chr4A 88.293 410 37 9 3465 3866 639056906 639057312 7.990000e-132 481.0
45 TraesCS7B01G152300 chr4A 79.621 211 40 3 2128 2336 596829881 596829672 9.200000e-32 148.0
46 TraesCS7B01G152300 chr4A 82.353 85 8 6 2141 2222 389239861 389239781 2.650000e-07 67.6
47 TraesCS7B01G152300 chr6D 88.971 408 36 8 3465 3866 457095974 457095570 2.850000e-136 496.0
48 TraesCS7B01G152300 chr6D 92.537 67 2 2 2056 2120 408903159 408903094 4.370000e-15 93.5
49 TraesCS7B01G152300 chr4D 88.971 408 33 8 3465 3866 101440535 101440134 1.030000e-135 494.0
50 TraesCS7B01G152300 chr1B 83.176 529 71 16 1 519 670530938 670530418 6.220000e-128 468.0
51 TraesCS7B01G152300 chr1B 82.163 527 69 18 1 519 524165485 524164976 2.930000e-116 429.0
52 TraesCS7B01G152300 chr1B 88.372 129 14 1 3980 4108 667944792 667944919 1.980000e-33 154.0
53 TraesCS7B01G152300 chr5D 87.317 410 39 10 3465 3866 501436795 501436391 1.350000e-124 457.0
54 TraesCS7B01G152300 chr5D 91.758 182 15 0 2617 2798 386647068 386647249 1.900000e-63 254.0
55 TraesCS7B01G152300 chr5D 90.659 182 17 0 2617 2798 386687506 386687325 4.100000e-60 243.0
56 TraesCS7B01G152300 chr5D 90.323 124 12 0 3985 4108 133864007 133863884 3.290000e-36 163.0
57 TraesCS7B01G152300 chr5D 87.640 89 9 1 2041 2127 175300057 175299969 7.260000e-18 102.0
58 TraesCS7B01G152300 chr5D 83.495 103 15 1 2031 2131 347443715 347443817 1.220000e-15 95.3
59 TraesCS7B01G152300 chr3D 82.798 529 70 15 1 519 19334834 19334317 1.740000e-123 453.0
60 TraesCS7B01G152300 chr3D 88.189 381 31 10 3465 3835 524645322 524645698 3.770000e-120 442.0
61 TraesCS7B01G152300 chr1D 83.465 508 63 14 21 519 90139973 90139478 1.740000e-123 453.0
62 TraesCS7B01G152300 chr3A 85.961 406 43 9 3466 3866 658982652 658983048 4.910000e-114 422.0
63 TraesCS7B01G152300 chr6B 84.578 415 51 9 3465 3866 68386153 68385739 2.300000e-107 399.0
64 TraesCS7B01G152300 chr6B 88.710 124 14 0 3985 4108 230765191 230765314 7.110000e-33 152.0
65 TraesCS7B01G152300 chr2A 96.023 176 5 2 513 688 199082148 199082321 6.720000e-73 285.0
66 TraesCS7B01G152300 chr2A 88.298 94 9 1 2041 2132 329688172 329688079 1.210000e-20 111.0
67 TraesCS7B01G152300 chrUn 94.944 178 8 1 509 686 358047675 358047499 1.120000e-70 278.0
68 TraesCS7B01G152300 chr5A 91.209 182 16 0 2617 2798 488255911 488256092 8.820000e-62 248.0
69 TraesCS7B01G152300 chr5A 90.659 182 17 0 2617 2798 488316325 488316144 4.100000e-60 243.0
70 TraesCS7B01G152300 chr5A 82.090 201 27 6 2128 2326 111901070 111901263 3.290000e-36 163.0
71 TraesCS7B01G152300 chr5A 86.598 97 10 2 2038 2132 341688268 341688363 2.020000e-18 104.0
72 TraesCS7B01G152300 chr1A 86.598 97 11 2 2037 2131 155857863 155857767 5.620000e-19 106.0
73 TraesCS7B01G152300 chr1A 89.157 83 7 1 2040 2120 297698385 297698303 7.260000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G152300 chr7B 202504903 202509010 4107 False 7587.000000 7587 100.000000 1 4108 1 chr7B.!!$F1 4107
1 TraesCS7B01G152300 chr7B 578119584 578120092 508 True 549.000000 549 86.628000 21 519 1 chr7B.!!$R2 498
2 TraesCS7B01G152300 chr7B 718954301 718954825 524 True 462.000000 462 83.022000 1 521 1 chr7B.!!$R3 520
3 TraesCS7B01G152300 chr7B 203280369 203282773 2404 True 256.500000 283 85.807500 764 2799 2 chr7B.!!$R4 2035
4 TraesCS7B01G152300 chr7D 230992749 230997951 5202 False 1248.666667 2134 92.486333 722 3987 3 chr7D.!!$F1 3265
5 TraesCS7B01G152300 chr7D 232497129 232498870 1741 True 258.000000 283 85.884000 763 2799 2 chr7D.!!$R2 2036
6 TraesCS7B01G152300 chr7A 243852203 243854443 2240 False 1522.500000 1528 92.072500 722 3412 2 chr7A.!!$F1 2690
7 TraesCS7B01G152300 chr7A 244670732 244672498 1766 True 258.000000 283 87.326500 763 2799 2 chr7A.!!$R2 2036
8 TraesCS7B01G152300 chr2B 725812325 725812859 534 True 558.000000 558 86.034000 1 519 1 chr2B.!!$R6 518
9 TraesCS7B01G152300 chr3B 146296783 146297296 513 True 549.000000 549 86.513000 20 519 1 chr3B.!!$R1 499
10 TraesCS7B01G152300 chr3B 23416847 23417359 512 False 429.000000 429 82.231000 1 516 1 chr3B.!!$F2 515
11 TraesCS7B01G152300 chr5B 524415271 524415773 502 True 547.000000 547 86.693000 22 519 1 chr5B.!!$R4 497
12 TraesCS7B01G152300 chr5B 522600476 522600989 513 False 438.000000 438 82.420000 1 519 1 chr5B.!!$F1 518
13 TraesCS7B01G152300 chr4B 314789064 314789596 532 True 540.000000 540 85.502000 1 519 1 chr4B.!!$R1 518
14 TraesCS7B01G152300 chr4A 608474130 608474639 509 False 512.000000 512 85.409000 23 516 1 chr4A.!!$F1 493
15 TraesCS7B01G152300 chr1B 670530418 670530938 520 True 468.000000 468 83.176000 1 519 1 chr1B.!!$R2 518
16 TraesCS7B01G152300 chr1B 524164976 524165485 509 True 429.000000 429 82.163000 1 519 1 chr1B.!!$R1 518
17 TraesCS7B01G152300 chr3D 19334317 19334834 517 True 453.000000 453 82.798000 1 519 1 chr3D.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 939 0.243095 GCTTCGTGTTAGAGGGTCGT 59.757 55.0 0.00 0.0 0.00 4.34 F
1633 1827 0.679002 AGCACACTAGCCCTTGCATG 60.679 55.0 7.85 0.0 41.13 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2441 3752 0.647410 CTAAAGCACGATGCCAGTCG 59.353 55.0 6.39 2.25 46.52 4.18 R
3125 4458 1.185315 ACAAGCAAAGCGGCCATAAT 58.815 45.0 2.24 0.00 0.00 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 72 0.878523 TTTCACGAGAGGCACGGTTG 60.879 55.000 0.00 0.00 34.93 3.77
104 116 2.126463 CTTTCGCGAGAGGCACGA 60.126 61.111 18.35 0.00 43.84 4.35
106 118 2.804368 CTTTCGCGAGAGGCACGAGT 62.804 60.000 18.35 0.00 43.84 4.18
216 236 1.529438 GTGATTTCGTCAAAGGCACGA 59.471 47.619 0.00 0.00 44.36 4.35
255 275 4.914128 GGGAAAACCCGTGTTCCT 57.086 55.556 14.98 0.00 42.57 3.36
338 363 6.325028 TGGGATCTAGTTTTGAAGATCTCGAT 59.675 38.462 11.05 0.00 40.21 3.59
476 523 1.098712 TTGTCCACTTGTCGCAACCC 61.099 55.000 0.00 0.00 0.00 4.11
478 525 4.025401 CCACTTGTCGCAACCCGC 62.025 66.667 0.00 0.00 36.73 6.13
521 568 6.805760 CCACGAAAAGTACTCCTTAACTACTC 59.194 42.308 0.00 0.00 31.48 2.59
522 569 7.309073 CCACGAAAAGTACTCCTTAACTACTCT 60.309 40.741 0.00 0.00 31.48 3.24
523 570 7.750014 CACGAAAAGTACTCCTTAACTACTCTC 59.250 40.741 0.00 0.00 31.48 3.20
524 571 7.665145 ACGAAAAGTACTCCTTAACTACTCTCT 59.335 37.037 0.00 0.00 31.48 3.10
525 572 8.177013 CGAAAAGTACTCCTTAACTACTCTCTC 58.823 40.741 0.00 0.00 31.48 3.20
526 573 7.943079 AAAGTACTCCTTAACTACTCTCTCC 57.057 40.000 0.00 0.00 31.48 3.71
527 574 5.673514 AGTACTCCTTAACTACTCTCTCCG 58.326 45.833 0.00 0.00 0.00 4.63
528 575 4.573021 ACTCCTTAACTACTCTCTCCGT 57.427 45.455 0.00 0.00 0.00 4.69
529 576 4.920999 ACTCCTTAACTACTCTCTCCGTT 58.079 43.478 0.00 0.00 0.00 4.44
530 577 4.943093 ACTCCTTAACTACTCTCTCCGTTC 59.057 45.833 0.00 0.00 0.00 3.95
531 578 4.268359 TCCTTAACTACTCTCTCCGTTCC 58.732 47.826 0.00 0.00 0.00 3.62
532 579 4.018597 TCCTTAACTACTCTCTCCGTTCCT 60.019 45.833 0.00 0.00 0.00 3.36
533 580 5.190528 TCCTTAACTACTCTCTCCGTTCCTA 59.809 44.000 0.00 0.00 0.00 2.94
534 581 5.884792 CCTTAACTACTCTCTCCGTTCCTAA 59.115 44.000 0.00 0.00 0.00 2.69
535 582 6.376581 CCTTAACTACTCTCTCCGTTCCTAAA 59.623 42.308 0.00 0.00 0.00 1.85
536 583 7.068470 CCTTAACTACTCTCTCCGTTCCTAAAT 59.932 40.741 0.00 0.00 0.00 1.40
537 584 9.118300 CTTAACTACTCTCTCCGTTCCTAAATA 57.882 37.037 0.00 0.00 0.00 1.40
538 585 7.951347 AACTACTCTCTCCGTTCCTAAATAA 57.049 36.000 0.00 0.00 0.00 1.40
539 586 8.536340 AACTACTCTCTCCGTTCCTAAATAAT 57.464 34.615 0.00 0.00 0.00 1.28
540 587 8.536340 ACTACTCTCTCCGTTCCTAAATAATT 57.464 34.615 0.00 0.00 0.00 1.40
541 588 8.414778 ACTACTCTCTCCGTTCCTAAATAATTG 58.585 37.037 0.00 0.00 0.00 2.32
542 589 7.184067 ACTCTCTCCGTTCCTAAATAATTGT 57.816 36.000 0.00 0.00 0.00 2.71
543 590 7.266400 ACTCTCTCCGTTCCTAAATAATTGTC 58.734 38.462 0.00 0.00 0.00 3.18
544 591 7.124448 ACTCTCTCCGTTCCTAAATAATTGTCT 59.876 37.037 0.00 0.00 0.00 3.41
545 592 7.848128 TCTCTCCGTTCCTAAATAATTGTCTT 58.152 34.615 0.00 0.00 0.00 3.01
546 593 8.319146 TCTCTCCGTTCCTAAATAATTGTCTTT 58.681 33.333 0.00 0.00 0.00 2.52
547 594 8.488651 TCTCCGTTCCTAAATAATTGTCTTTC 57.511 34.615 0.00 0.00 0.00 2.62
548 595 8.319146 TCTCCGTTCCTAAATAATTGTCTTTCT 58.681 33.333 0.00 0.00 0.00 2.52
549 596 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
550 597 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
551 598 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
564 611 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
565 612 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
566 613 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
567 614 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
568 615 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
569 616 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
570 617 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
571 618 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
572 619 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
574 621 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
575 622 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
576 623 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
577 624 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
578 625 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
579 626 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
580 627 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
581 628 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
582 629 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
583 630 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
584 631 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
585 632 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
586 633 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
587 634 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
588 635 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
589 636 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
590 637 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
591 638 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
592 639 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
593 640 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
594 641 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
595 642 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
596 643 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
597 644 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
598 645 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
611 658 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
612 659 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
613 660 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
614 661 9.856488 TGAATCTACACTCTAAAACATGTCTAC 57.144 33.333 0.00 0.00 0.00 2.59
615 662 9.856488 GAATCTACACTCTAAAACATGTCTACA 57.144 33.333 0.00 0.00 0.00 2.74
621 668 9.587772 ACACTCTAAAACATGTCTACATACATC 57.412 33.333 0.00 0.00 38.01 3.06
622 669 9.809096 CACTCTAAAACATGTCTACATACATCT 57.191 33.333 0.00 0.00 38.01 2.90
623 670 9.809096 ACTCTAAAACATGTCTACATACATCTG 57.191 33.333 0.00 0.00 38.01 2.90
624 671 9.809096 CTCTAAAACATGTCTACATACATCTGT 57.191 33.333 0.00 0.00 38.01 3.41
643 690 9.770097 ACATCTGTATGTTATAGTCCATTTGAG 57.230 33.333 0.00 0.00 44.07 3.02
644 691 9.987272 CATCTGTATGTTATAGTCCATTTGAGA 57.013 33.333 0.00 0.00 0.00 3.27
646 693 9.987272 TCTGTATGTTATAGTCCATTTGAGATG 57.013 33.333 0.00 0.00 0.00 2.90
647 694 9.212641 CTGTATGTTATAGTCCATTTGAGATGG 57.787 37.037 0.00 0.00 40.48 3.51
648 695 7.661437 TGTATGTTATAGTCCATTTGAGATGGC 59.339 37.037 0.00 0.00 39.01 4.40
649 696 6.252599 TGTTATAGTCCATTTGAGATGGCT 57.747 37.500 0.00 1.24 39.01 4.75
650 697 7.373617 TGTTATAGTCCATTTGAGATGGCTA 57.626 36.000 0.00 3.36 39.01 3.93
651 698 7.445121 TGTTATAGTCCATTTGAGATGGCTAG 58.555 38.462 0.00 0.00 39.01 3.42
652 699 7.290014 TGTTATAGTCCATTTGAGATGGCTAGA 59.710 37.037 0.00 0.00 39.01 2.43
653 700 6.753913 ATAGTCCATTTGAGATGGCTAGAA 57.246 37.500 0.00 0.00 39.01 2.10
654 701 5.441718 AGTCCATTTGAGATGGCTAGAAA 57.558 39.130 0.00 0.00 39.01 2.52
655 702 5.435291 AGTCCATTTGAGATGGCTAGAAAG 58.565 41.667 0.00 0.00 39.01 2.62
656 703 4.578105 GTCCATTTGAGATGGCTAGAAAGG 59.422 45.833 0.00 0.00 39.01 3.11
669 716 5.852282 GCTAGAAAGGCAATTATTTGGGA 57.148 39.130 0.00 0.00 33.22 4.37
670 717 6.220726 GCTAGAAAGGCAATTATTTGGGAA 57.779 37.500 0.00 0.00 33.22 3.97
671 718 6.042777 GCTAGAAAGGCAATTATTTGGGAAC 58.957 40.000 0.00 0.00 33.22 3.62
672 719 5.072040 AGAAAGGCAATTATTTGGGAACG 57.928 39.130 0.00 0.00 33.22 3.95
673 720 3.885724 AAGGCAATTATTTGGGAACGG 57.114 42.857 0.00 0.00 33.22 4.44
674 721 3.094484 AGGCAATTATTTGGGAACGGA 57.906 42.857 0.00 0.00 33.22 4.69
675 722 3.023832 AGGCAATTATTTGGGAACGGAG 58.976 45.455 0.00 0.00 33.22 4.63
676 723 2.100749 GGCAATTATTTGGGAACGGAGG 59.899 50.000 0.00 0.00 33.22 4.30
677 724 2.100749 GCAATTATTTGGGAACGGAGGG 59.899 50.000 0.00 0.00 33.22 4.30
678 725 3.626930 CAATTATTTGGGAACGGAGGGA 58.373 45.455 0.00 0.00 0.00 4.20
679 726 3.577805 ATTATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
680 727 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
681 728 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
682 729 1.961133 TTTGGGAACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
683 730 1.961133 TTGGGAACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
684 731 2.852714 TGGGAACGGAGGGAGTATTA 57.147 50.000 0.00 0.00 0.00 0.98
685 732 3.119009 TGGGAACGGAGGGAGTATTAA 57.881 47.619 0.00 0.00 0.00 1.40
686 733 2.767960 TGGGAACGGAGGGAGTATTAAC 59.232 50.000 0.00 0.00 0.00 2.01
687 734 3.036819 GGGAACGGAGGGAGTATTAACT 58.963 50.000 0.00 0.00 39.21 2.24
688 735 4.218312 GGGAACGGAGGGAGTATTAACTA 58.782 47.826 0.00 0.00 35.56 2.24
689 736 4.280425 GGGAACGGAGGGAGTATTAACTAG 59.720 50.000 0.00 0.00 35.56 2.57
690 737 4.892345 GGAACGGAGGGAGTATTAACTAGT 59.108 45.833 0.00 0.00 35.56 2.57
691 738 5.221204 GGAACGGAGGGAGTATTAACTAGTG 60.221 48.000 0.00 0.00 35.56 2.74
692 739 5.121380 ACGGAGGGAGTATTAACTAGTGA 57.879 43.478 0.00 0.00 35.56 3.41
693 740 5.703310 ACGGAGGGAGTATTAACTAGTGAT 58.297 41.667 0.00 0.00 35.56 3.06
694 741 6.134754 ACGGAGGGAGTATTAACTAGTGATT 58.865 40.000 0.00 0.00 35.56 2.57
695 742 6.610425 ACGGAGGGAGTATTAACTAGTGATTT 59.390 38.462 0.00 0.00 35.56 2.17
696 743 7.146648 CGGAGGGAGTATTAACTAGTGATTTC 58.853 42.308 0.00 0.00 35.56 2.17
697 744 7.146648 GGAGGGAGTATTAACTAGTGATTTCG 58.853 42.308 0.00 0.00 35.56 3.46
698 745 6.514063 AGGGAGTATTAACTAGTGATTTCGC 58.486 40.000 0.00 4.84 35.56 4.70
699 746 5.401674 GGGAGTATTAACTAGTGATTTCGCG 59.598 44.000 0.00 0.00 35.56 5.87
700 747 5.107951 GGAGTATTAACTAGTGATTTCGCGC 60.108 44.000 0.00 0.00 35.56 6.86
701 748 4.743644 AGTATTAACTAGTGATTTCGCGCC 59.256 41.667 0.00 0.00 32.84 6.53
702 749 2.953466 TAACTAGTGATTTCGCGCCT 57.047 45.000 0.00 0.00 0.00 5.52
703 750 1.359848 AACTAGTGATTTCGCGCCTG 58.640 50.000 0.00 0.00 0.00 4.85
704 751 1.084370 ACTAGTGATTTCGCGCCTGC 61.084 55.000 0.00 0.00 37.91 4.85
705 752 1.766143 CTAGTGATTTCGCGCCTGCC 61.766 60.000 0.00 0.00 38.08 4.85
706 753 4.520846 GTGATTTCGCGCCTGCCG 62.521 66.667 0.00 0.00 38.08 5.69
708 755 4.223964 GATTTCGCGCCTGCCGTC 62.224 66.667 0.00 0.00 39.71 4.79
709 756 4.760047 ATTTCGCGCCTGCCGTCT 62.760 61.111 0.00 0.00 39.71 4.18
710 757 3.365291 ATTTCGCGCCTGCCGTCTA 62.365 57.895 0.00 0.00 39.71 2.59
711 758 3.982372 TTTCGCGCCTGCCGTCTAG 62.982 63.158 0.00 0.00 39.71 2.43
758 805 2.803030 TTCTCGTAGTGGGCTAGTCT 57.197 50.000 0.00 0.00 0.00 3.24
759 806 2.803030 TCTCGTAGTGGGCTAGTCTT 57.197 50.000 0.00 0.00 0.00 3.01
802 852 3.735037 CTAGGGTTCGCGGAAGGCC 62.735 68.421 6.13 0.00 38.94 5.19
813 863 1.298667 GGAAGGCCTAAAGACCGCA 59.701 57.895 5.16 0.00 0.00 5.69
877 927 3.330766 CCTCGCTTCGTGTTAGAGG 57.669 57.895 0.00 0.00 41.91 3.69
881 938 0.797249 CGCTTCGTGTTAGAGGGTCG 60.797 60.000 0.00 0.00 0.00 4.79
882 939 0.243095 GCTTCGTGTTAGAGGGTCGT 59.757 55.000 0.00 0.00 0.00 4.34
884 941 0.883833 TTCGTGTTAGAGGGTCGTCC 59.116 55.000 0.00 0.00 0.00 4.79
895 952 0.816373 GGGTCGTCCTTCTCAGGTAC 59.184 60.000 0.00 0.00 41.69 3.34
896 953 0.816373 GGTCGTCCTTCTCAGGTACC 59.184 60.000 2.73 2.73 41.69 3.34
957 1016 4.883585 TCTTGCGATGCTATTTTCTCCATT 59.116 37.500 0.00 0.00 0.00 3.16
960 1019 3.732721 GCGATGCTATTTTCTCCATTTGC 59.267 43.478 0.00 0.00 0.00 3.68
1133 1195 2.823959 ACCCAGTGGAATTCGTAGGTA 58.176 47.619 11.95 0.00 34.81 3.08
1134 1196 2.498885 ACCCAGTGGAATTCGTAGGTAC 59.501 50.000 11.95 0.00 34.81 3.34
1135 1197 2.159000 CCCAGTGGAATTCGTAGGTACC 60.159 54.545 11.95 2.73 0.00 3.34
1136 1198 2.498481 CCAGTGGAATTCGTAGGTACCA 59.502 50.000 15.94 0.00 0.00 3.25
1137 1199 3.518590 CAGTGGAATTCGTAGGTACCAC 58.481 50.000 15.94 9.39 45.25 4.16
1138 1200 2.533266 GTGGAATTCGTAGGTACCACG 58.467 52.381 22.88 22.88 38.35 4.94
1139 1201 1.135024 TGGAATTCGTAGGTACCACGC 60.135 52.381 23.62 13.96 39.23 5.34
1156 1218 1.513622 GCCCACGTGTTTTGGTTGT 59.486 52.632 15.65 0.00 31.46 3.32
1158 1220 1.915952 CCCACGTGTTTTGGTTGTTC 58.084 50.000 15.65 0.00 31.46 3.18
1213 1275 2.357034 CTGTGCGCCGGTGTAGTT 60.357 61.111 17.91 0.00 0.00 2.24
1218 1280 2.255881 GCGCCGGTGTAGTTGGTTT 61.256 57.895 17.91 0.00 0.00 3.27
1226 1288 2.035449 GGTGTAGTTGGTTTGCCTTTCC 59.965 50.000 0.00 0.00 35.27 3.13
1234 1344 1.804748 GGTTTGCCTTTCCGAGTAGTG 59.195 52.381 0.00 0.00 0.00 2.74
1276 1388 1.735018 TGACTGTTGTTGGTCGTTGTG 59.265 47.619 0.00 0.00 35.45 3.33
1300 1412 7.227116 GTGGTTGCGGTGTATTCCTAATTTATA 59.773 37.037 0.00 0.00 0.00 0.98
1301 1413 7.227116 TGGTTGCGGTGTATTCCTAATTTATAC 59.773 37.037 0.00 0.00 0.00 1.47
1303 1415 9.480053 GTTGCGGTGTATTCCTAATTTATACTA 57.520 33.333 0.00 0.00 0.00 1.82
1320 1445 8.420374 TTTATACTAGCAATGGTTCTTCGAAG 57.580 34.615 19.35 19.35 0.00 3.79
1327 1453 3.611766 ATGGTTCTTCGAAGTGGTAGG 57.388 47.619 23.85 0.00 0.00 3.18
1328 1454 2.600790 TGGTTCTTCGAAGTGGTAGGA 58.399 47.619 23.85 0.80 0.00 2.94
1338 1464 3.676093 GAAGTGGTAGGAAAGTGGAAGG 58.324 50.000 0.00 0.00 0.00 3.46
1361 1523 4.731773 GCATAGCCTGTAGAAATGTGTTGC 60.732 45.833 0.00 0.00 0.00 4.17
1374 1536 5.783100 AATGTGTTGCTGTTTCTTTTGTG 57.217 34.783 0.00 0.00 0.00 3.33
1383 1545 4.620982 CTGTTTCTTTTGTGTTGGGATCC 58.379 43.478 1.92 1.92 0.00 3.36
1384 1546 3.067461 TGTTTCTTTTGTGTTGGGATCCG 59.933 43.478 5.45 0.00 0.00 4.18
1449 1619 5.009610 TCAACCTTGCTTATTTGGACTTGAC 59.990 40.000 0.00 0.00 0.00 3.18
1484 1660 1.804396 TTGGTGCAAAGGTGATGCCG 61.804 55.000 0.00 0.00 43.16 5.69
1502 1678 2.863704 GCCGAATTTTGAGCTTTGCTGT 60.864 45.455 0.00 0.00 39.88 4.40
1580 1774 3.669251 AAAGGTCTGAGGAAGAGAACG 57.331 47.619 0.00 0.00 34.84 3.95
1633 1827 0.679002 AGCACACTAGCCCTTGCATG 60.679 55.000 7.85 0.00 41.13 4.06
1643 1837 2.374504 AGCCCTTGCATGAGTATAGCAT 59.625 45.455 0.00 0.00 41.13 3.79
1725 1922 5.472137 GGATATTAAAGGCGTGGCTTCATTA 59.528 40.000 9.25 2.47 0.00 1.90
1848 2085 2.584791 CAGCAAACGAATTCTTTCCCG 58.415 47.619 3.52 0.00 0.00 5.14
1879 2116 2.969821 TTGGTGGCTGTAGTCCATTT 57.030 45.000 0.00 0.00 35.81 2.32
1909 2146 9.647797 TTCTTCTGCATTTAACTTCTCGTATAA 57.352 29.630 0.00 0.00 0.00 0.98
1910 2147 9.084164 TCTTCTGCATTTAACTTCTCGTATAAC 57.916 33.333 0.00 0.00 0.00 1.89
1957 2917 1.035139 AAGTGCACCTGCCAAAGAAG 58.965 50.000 14.63 0.00 41.18 2.85
1975 2939 5.876612 AGAAGTGATGTTTCAAGAGCATC 57.123 39.130 0.00 0.00 39.37 3.91
2050 3014 6.369629 TCTTTTTCAAAACATACTCCCTCCA 58.630 36.000 0.00 0.00 0.00 3.86
2441 3752 7.606839 AGTTTCTTGTAGTTGTAGCTTATTCCC 59.393 37.037 0.00 0.00 0.00 3.97
2476 3798 5.179368 GTGCTTTAGACAACACATAAGCAGA 59.821 40.000 7.49 0.00 45.80 4.26
2849 4181 2.227388 GCTGATTGGTGTCAAGAACCTG 59.773 50.000 0.00 0.00 38.60 4.00
2852 4184 4.074259 TGATTGGTGTCAAGAACCTGATG 58.926 43.478 0.00 0.00 38.60 3.07
2892 4224 6.147000 GGTTCTTCACTCTTCTGATTCTGAAC 59.853 42.308 2.19 0.00 0.00 3.18
2910 4242 2.346766 ACTGTGCTGATTGGTGTCAA 57.653 45.000 0.00 0.00 37.28 3.18
2911 4243 1.949525 ACTGTGCTGATTGGTGTCAAC 59.050 47.619 0.00 0.00 35.48 3.18
2912 4244 1.948834 CTGTGCTGATTGGTGTCAACA 59.051 47.619 0.00 0.00 35.48 3.33
2913 4245 2.555325 CTGTGCTGATTGGTGTCAACAT 59.445 45.455 0.00 0.00 35.48 2.71
2914 4246 2.957680 TGTGCTGATTGGTGTCAACATT 59.042 40.909 0.00 0.00 35.48 2.71
2915 4247 3.384146 TGTGCTGATTGGTGTCAACATTT 59.616 39.130 0.00 0.00 35.48 2.32
2916 4248 4.141981 TGTGCTGATTGGTGTCAACATTTT 60.142 37.500 0.00 0.00 35.48 1.82
2917 4249 4.810491 GTGCTGATTGGTGTCAACATTTTT 59.190 37.500 0.00 0.00 35.48 1.94
3125 4458 4.973168 AGTGAAATGTTCTTCCAGTGCTA 58.027 39.130 0.00 0.00 0.00 3.49
3186 4519 5.351740 GGGAGCTTGTTTACTCATCTGTTAC 59.648 44.000 0.00 0.00 34.48 2.50
3224 4557 7.464830 ACATGCTGTTATTATCAGTAACGAC 57.535 36.000 0.00 0.00 35.35 4.34
3226 4559 8.410912 ACATGCTGTTATTATCAGTAACGACTA 58.589 33.333 0.00 0.00 35.35 2.59
3234 4567 2.995283 TCAGTAACGACTAGCAGGCTA 58.005 47.619 0.49 0.49 33.32 3.93
3472 6807 6.937436 ACCGAGTATTGATTTGGGAAATAC 57.063 37.500 0.00 0.00 37.14 1.89
3473 6808 6.419791 ACCGAGTATTGATTTGGGAAATACA 58.580 36.000 7.34 0.00 38.61 2.29
3474 6809 6.317893 ACCGAGTATTGATTTGGGAAATACAC 59.682 38.462 7.34 1.36 38.61 2.90
3475 6810 6.542370 CCGAGTATTGATTTGGGAAATACACT 59.458 38.462 7.34 0.00 38.61 3.55
3476 6811 7.067008 CCGAGTATTGATTTGGGAAATACACTT 59.933 37.037 7.34 0.00 38.61 3.16
3477 6812 8.458843 CGAGTATTGATTTGGGAAATACACTTT 58.541 33.333 7.34 0.00 38.61 2.66
3478 6813 9.573133 GAGTATTGATTTGGGAAATACACTTTG 57.427 33.333 7.34 0.00 38.61 2.77
3479 6814 8.531146 AGTATTGATTTGGGAAATACACTTTGG 58.469 33.333 7.34 0.00 38.61 3.28
3480 6815 6.739331 TTGATTTGGGAAATACACTTTGGT 57.261 33.333 0.00 0.00 0.00 3.67
3481 6816 6.739331 TGATTTGGGAAATACACTTTGGTT 57.261 33.333 0.00 0.00 0.00 3.67
3482 6817 6.754193 TGATTTGGGAAATACACTTTGGTTC 58.246 36.000 0.00 0.00 0.00 3.62
3483 6818 5.538849 TTTGGGAAATACACTTTGGTTCC 57.461 39.130 0.00 0.00 0.00 3.62
3484 6819 4.463050 TGGGAAATACACTTTGGTTCCT 57.537 40.909 0.00 0.00 0.00 3.36
3485 6820 4.148838 TGGGAAATACACTTTGGTTCCTG 58.851 43.478 0.00 0.00 0.00 3.86
3486 6821 3.509967 GGGAAATACACTTTGGTTCCTGG 59.490 47.826 0.00 0.00 0.00 4.45
3487 6822 4.149598 GGAAATACACTTTGGTTCCTGGT 58.850 43.478 0.00 0.00 0.00 4.00
3488 6823 4.587262 GGAAATACACTTTGGTTCCTGGTT 59.413 41.667 0.00 0.00 0.00 3.67
3489 6824 5.508994 GGAAATACACTTTGGTTCCTGGTTG 60.509 44.000 0.00 0.00 0.00 3.77
3490 6825 2.525105 ACACTTTGGTTCCTGGTTGT 57.475 45.000 0.00 0.00 0.00 3.32
3491 6826 3.655615 ACACTTTGGTTCCTGGTTGTA 57.344 42.857 0.00 0.00 0.00 2.41
3492 6827 4.178956 ACACTTTGGTTCCTGGTTGTAT 57.821 40.909 0.00 0.00 0.00 2.29
3493 6828 5.313280 ACACTTTGGTTCCTGGTTGTATA 57.687 39.130 0.00 0.00 0.00 1.47
3494 6829 5.887754 ACACTTTGGTTCCTGGTTGTATAT 58.112 37.500 0.00 0.00 0.00 0.86
3495 6830 7.023171 ACACTTTGGTTCCTGGTTGTATATA 57.977 36.000 0.00 0.00 0.00 0.86
3496 6831 6.882678 ACACTTTGGTTCCTGGTTGTATATAC 59.117 38.462 5.89 5.89 0.00 1.47
3497 6832 6.882140 CACTTTGGTTCCTGGTTGTATATACA 59.118 38.462 11.62 11.62 0.00 2.29
3498 6833 7.556275 CACTTTGGTTCCTGGTTGTATATACAT 59.444 37.037 16.16 0.00 35.89 2.29
3499 6834 7.773690 ACTTTGGTTCCTGGTTGTATATACATC 59.226 37.037 16.16 14.64 35.89 3.06
3500 6835 6.182507 TGGTTCCTGGTTGTATATACATCC 57.817 41.667 26.38 26.38 43.24 3.51
3501 6836 5.908831 TGGTTCCTGGTTGTATATACATCCT 59.091 40.000 30.09 0.00 43.31 3.24
3502 6837 7.077095 TGGTTCCTGGTTGTATATACATCCTA 58.923 38.462 30.09 20.44 43.31 2.94
3503 6838 7.737607 TGGTTCCTGGTTGTATATACATCCTAT 59.262 37.037 30.09 0.00 43.31 2.57
3504 6839 9.263446 GGTTCCTGGTTGTATATACATCCTATA 57.737 37.037 30.09 18.59 43.31 1.31
3585 6920 9.382275 AGATTAAACTTGATTTTGTTTTGCACT 57.618 25.926 0.00 0.00 37.53 4.40
3586 6921 9.424659 GATTAAACTTGATTTTGTTTTGCACTG 57.575 29.630 0.00 0.00 37.53 3.66
3587 6922 5.799681 AACTTGATTTTGTTTTGCACTGG 57.200 34.783 0.00 0.00 0.00 4.00
3588 6923 4.831107 ACTTGATTTTGTTTTGCACTGGT 58.169 34.783 0.00 0.00 0.00 4.00
3589 6924 5.244755 ACTTGATTTTGTTTTGCACTGGTT 58.755 33.333 0.00 0.00 0.00 3.67
3590 6925 5.704978 ACTTGATTTTGTTTTGCACTGGTTT 59.295 32.000 0.00 0.00 0.00 3.27
3591 6926 6.876257 ACTTGATTTTGTTTTGCACTGGTTTA 59.124 30.769 0.00 0.00 0.00 2.01
3592 6927 7.552330 ACTTGATTTTGTTTTGCACTGGTTTAT 59.448 29.630 0.00 0.00 0.00 1.40
3593 6928 8.948631 TTGATTTTGTTTTGCACTGGTTTATA 57.051 26.923 0.00 0.00 0.00 0.98
3594 6929 8.948631 TGATTTTGTTTTGCACTGGTTTATAA 57.051 26.923 0.00 0.00 0.00 0.98
3595 6930 9.383519 TGATTTTGTTTTGCACTGGTTTATAAA 57.616 25.926 0.00 0.00 0.00 1.40
3601 6936 9.383519 TGTTTTGCACTGGTTTATAAATTTTCA 57.616 25.926 0.31 0.00 0.00 2.69
3604 6939 9.770097 TTTGCACTGGTTTATAAATTTTCATGA 57.230 25.926 0.31 0.00 0.00 3.07
3605 6940 9.770097 TTGCACTGGTTTATAAATTTTCATGAA 57.230 25.926 3.38 3.38 0.00 2.57
3606 6941 9.770097 TGCACTGGTTTATAAATTTTCATGAAA 57.230 25.926 16.91 16.91 0.00 2.69
3629 6964 4.670896 AAAACCCAACATTGACTTCAGG 57.329 40.909 0.00 0.00 0.00 3.86
3630 6965 2.292828 ACCCAACATTGACTTCAGGG 57.707 50.000 0.00 0.00 40.66 4.45
3631 6966 1.780309 ACCCAACATTGACTTCAGGGA 59.220 47.619 7.35 0.00 38.21 4.20
3632 6967 2.176798 ACCCAACATTGACTTCAGGGAA 59.823 45.455 7.35 0.00 38.21 3.97
3633 6968 3.230134 CCCAACATTGACTTCAGGGAAA 58.770 45.455 0.00 0.00 36.96 3.13
3634 6969 3.640967 CCCAACATTGACTTCAGGGAAAA 59.359 43.478 0.00 0.00 36.96 2.29
3635 6970 4.100808 CCCAACATTGACTTCAGGGAAAAA 59.899 41.667 0.00 0.00 36.96 1.94
3673 7008 8.998277 TTTCCTATTATAGCTCACTACTCACT 57.002 34.615 0.00 0.00 0.00 3.41
3682 7017 5.725362 AGCTCACTACTCACTATTTTGACC 58.275 41.667 0.00 0.00 0.00 4.02
3683 7018 4.563184 GCTCACTACTCACTATTTTGACCG 59.437 45.833 0.00 0.00 0.00 4.79
3684 7019 5.621555 GCTCACTACTCACTATTTTGACCGA 60.622 44.000 0.00 0.00 0.00 4.69
3685 7020 6.335471 TCACTACTCACTATTTTGACCGAA 57.665 37.500 0.00 0.00 0.00 4.30
3686 7021 6.751157 TCACTACTCACTATTTTGACCGAAA 58.249 36.000 0.00 0.00 0.00 3.46
3687 7022 7.211573 TCACTACTCACTATTTTGACCGAAAA 58.788 34.615 0.00 0.00 37.93 2.29
3688 7023 7.876068 TCACTACTCACTATTTTGACCGAAAAT 59.124 33.333 0.00 0.00 44.77 1.82
3689 7024 8.504005 CACTACTCACTATTTTGACCGAAAATT 58.496 33.333 0.00 0.00 40.73 1.82
3690 7025 9.063615 ACTACTCACTATTTTGACCGAAAATTT 57.936 29.630 0.00 0.00 40.73 1.82
3691 7026 9.329913 CTACTCACTATTTTGACCGAAAATTTG 57.670 33.333 0.00 0.00 40.73 2.32
3692 7027 7.712797 ACTCACTATTTTGACCGAAAATTTGT 58.287 30.769 0.00 0.00 40.73 2.83
3693 7028 7.860872 ACTCACTATTTTGACCGAAAATTTGTC 59.139 33.333 0.00 0.00 40.73 3.18
3694 7029 7.936584 TCACTATTTTGACCGAAAATTTGTCT 58.063 30.769 8.19 0.00 40.73 3.41
3695 7030 8.410141 TCACTATTTTGACCGAAAATTTGTCTT 58.590 29.630 8.19 0.00 40.73 3.01
3696 7031 9.030301 CACTATTTTGACCGAAAATTTGTCTTT 57.970 29.630 8.19 0.00 40.73 2.52
3697 7032 9.594478 ACTATTTTGACCGAAAATTTGTCTTTT 57.406 25.926 8.19 0.00 40.73 2.27
3700 7035 7.891183 TTTGACCGAAAATTTGTCTTTTTGA 57.109 28.000 8.19 0.00 33.20 2.69
3701 7036 7.891183 TTGACCGAAAATTTGTCTTTTTGAA 57.109 28.000 8.19 0.00 33.20 2.69
3702 7037 7.891183 TGACCGAAAATTTGTCTTTTTGAAA 57.109 28.000 8.19 0.00 33.20 2.69
3703 7038 8.311650 TGACCGAAAATTTGTCTTTTTGAAAA 57.688 26.923 8.19 0.00 33.20 2.29
3704 7039 8.439286 TGACCGAAAATTTGTCTTTTTGAAAAG 58.561 29.630 9.40 9.40 45.17 2.27
3717 7052 7.755582 CTTTTTGAAAAGAAGTCGAATGGTT 57.244 32.000 10.00 0.00 46.39 3.67
3718 7053 8.850454 CTTTTTGAAAAGAAGTCGAATGGTTA 57.150 30.769 10.00 0.00 46.39 2.85
3719 7054 9.463443 CTTTTTGAAAAGAAGTCGAATGGTTAT 57.537 29.630 10.00 0.00 46.39 1.89
3720 7055 9.810545 TTTTTGAAAAGAAGTCGAATGGTTATT 57.189 25.926 0.00 0.00 0.00 1.40
3721 7056 9.810545 TTTTGAAAAGAAGTCGAATGGTTATTT 57.189 25.926 0.00 0.00 0.00 1.40
3722 7057 9.810545 TTTGAAAAGAAGTCGAATGGTTATTTT 57.189 25.926 0.00 0.00 29.64 1.82
3723 7058 9.458374 TTGAAAAGAAGTCGAATGGTTATTTTC 57.542 29.630 16.31 16.31 39.84 2.29
3724 7059 8.846211 TGAAAAGAAGTCGAATGGTTATTTTCT 58.154 29.630 20.11 4.03 39.99 2.52
3725 7060 9.678941 GAAAAGAAGTCGAATGGTTATTTTCTT 57.321 29.630 16.09 5.48 37.93 2.52
3729 7064 9.463443 AGAAGTCGAATGGTTATTTTCTTTTTG 57.537 29.630 0.00 0.00 0.00 2.44
3730 7065 9.244799 GAAGTCGAATGGTTATTTTCTTTTTGT 57.755 29.630 0.00 0.00 0.00 2.83
3731 7066 8.574196 AGTCGAATGGTTATTTTCTTTTTGTG 57.426 30.769 0.00 0.00 0.00 3.33
3732 7067 7.651704 AGTCGAATGGTTATTTTCTTTTTGTGG 59.348 33.333 0.00 0.00 0.00 4.17
3733 7068 7.650104 GTCGAATGGTTATTTTCTTTTTGTGGA 59.350 33.333 0.00 0.00 0.00 4.02
3734 7069 8.198109 TCGAATGGTTATTTTCTTTTTGTGGAA 58.802 29.630 0.00 0.00 0.00 3.53
3735 7070 8.987890 CGAATGGTTATTTTCTTTTTGTGGAAT 58.012 29.630 0.00 0.00 0.00 3.01
3745 7080 8.839310 TTTCTTTTTGTGGAATTTTTCTCACA 57.161 26.923 0.00 0.00 38.32 3.58
3746 7081 8.477984 TTCTTTTTGTGGAATTTTTCTCACAG 57.522 30.769 9.73 2.95 39.89 3.66
3747 7082 7.041107 TCTTTTTGTGGAATTTTTCTCACAGG 58.959 34.615 9.73 5.32 39.89 4.00
3748 7083 5.930837 TTTGTGGAATTTTTCTCACAGGT 57.069 34.783 9.73 0.00 39.89 4.00
3749 7084 7.411486 TTTTGTGGAATTTTTCTCACAGGTA 57.589 32.000 9.73 0.00 39.89 3.08
3750 7085 7.595819 TTTGTGGAATTTTTCTCACAGGTAT 57.404 32.000 9.73 0.00 39.89 2.73
3751 7086 8.698973 TTTGTGGAATTTTTCTCACAGGTATA 57.301 30.769 9.73 0.00 39.89 1.47
3752 7087 8.698973 TTGTGGAATTTTTCTCACAGGTATAA 57.301 30.769 9.73 0.00 39.89 0.98
3753 7088 8.877864 TGTGGAATTTTTCTCACAGGTATAAT 57.122 30.769 0.00 0.00 36.56 1.28
3754 7089 9.967451 TGTGGAATTTTTCTCACAGGTATAATA 57.033 29.630 0.00 0.00 36.56 0.98
3761 7096 9.886132 TTTTTCTCACAGGTATAATAGAAGGTC 57.114 33.333 0.00 0.00 0.00 3.85
3762 7097 8.603898 TTTCTCACAGGTATAATAGAAGGTCA 57.396 34.615 0.00 0.00 0.00 4.02
3763 7098 8.603898 TTCTCACAGGTATAATAGAAGGTCAA 57.396 34.615 0.00 0.00 0.00 3.18
3764 7099 8.239038 TCTCACAGGTATAATAGAAGGTCAAG 57.761 38.462 0.00 0.00 0.00 3.02
3765 7100 7.839705 TCTCACAGGTATAATAGAAGGTCAAGT 59.160 37.037 0.00 0.00 0.00 3.16
3766 7101 8.375493 TCACAGGTATAATAGAAGGTCAAGTT 57.625 34.615 0.00 0.00 0.00 2.66
3767 7102 8.822805 TCACAGGTATAATAGAAGGTCAAGTTT 58.177 33.333 0.00 0.00 0.00 2.66
3857 7192 5.421277 TGTATATACACCAGGAACCAAACG 58.579 41.667 11.62 0.00 0.00 3.60
3858 7193 2.943036 ATACACCAGGAACCAAACGT 57.057 45.000 0.00 0.00 0.00 3.99
3859 7194 2.713863 TACACCAGGAACCAAACGTT 57.286 45.000 0.00 0.00 37.41 3.99
3879 7214 3.710326 TCTCGTCTGTATTGATTCCGG 57.290 47.619 0.00 0.00 0.00 5.14
3886 7221 7.042950 TCGTCTGTATTGATTCCGGAAAATTA 58.957 34.615 23.08 10.37 0.00 1.40
3892 7227 9.184523 TGTATTGATTCCGGAAAATTAACTCAT 57.815 29.630 23.08 10.45 0.00 2.90
3987 7334 7.065803 CACATACAAACAAGACCCACCTATTAG 59.934 40.741 0.00 0.00 0.00 1.73
3988 7335 5.836024 ACAAACAAGACCCACCTATTAGA 57.164 39.130 0.00 0.00 0.00 2.10
3989 7336 5.805728 ACAAACAAGACCCACCTATTAGAG 58.194 41.667 0.00 0.00 0.00 2.43
3990 7337 4.489306 AACAAGACCCACCTATTAGAGC 57.511 45.455 0.00 0.00 0.00 4.09
3991 7338 3.450904 ACAAGACCCACCTATTAGAGCA 58.549 45.455 0.00 0.00 0.00 4.26
3992 7339 4.040755 ACAAGACCCACCTATTAGAGCAT 58.959 43.478 0.00 0.00 0.00 3.79
3993 7340 4.101741 ACAAGACCCACCTATTAGAGCATC 59.898 45.833 0.00 0.00 0.00 3.91
4004 7351 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
4005 7352 1.880340 GAGCATCTCCAGCCGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
4006 7353 2.892425 GCATCTCCAGCCGTTCGG 60.892 66.667 6.90 6.90 0.00 4.30
4027 7374 3.068064 CCCAGGGCGCCGAAAAAT 61.068 61.111 22.54 0.00 0.00 1.82
4028 7375 1.751162 CCCAGGGCGCCGAAAAATA 60.751 57.895 22.54 0.00 0.00 1.40
4029 7376 1.724582 CCCAGGGCGCCGAAAAATAG 61.725 60.000 22.54 2.53 0.00 1.73
4030 7377 1.064134 CAGGGCGCCGAAAAATAGC 59.936 57.895 22.54 2.36 0.00 2.97
4037 7384 2.477880 CCGAAAAATAGCGGCCTGT 58.522 52.632 0.00 0.00 41.17 4.00
4038 7385 0.098728 CCGAAAAATAGCGGCCTGTG 59.901 55.000 0.00 0.00 41.17 3.66
4039 7386 1.083489 CGAAAAATAGCGGCCTGTGA 58.917 50.000 0.00 0.00 0.00 3.58
4040 7387 1.062587 CGAAAAATAGCGGCCTGTGAG 59.937 52.381 0.00 0.00 0.00 3.51
4041 7388 2.084546 GAAAAATAGCGGCCTGTGAGT 58.915 47.619 0.00 0.00 0.00 3.41
4042 7389 1.453155 AAAATAGCGGCCTGTGAGTG 58.547 50.000 0.00 0.00 0.00 3.51
4043 7390 0.613260 AAATAGCGGCCTGTGAGTGA 59.387 50.000 0.00 0.00 0.00 3.41
4044 7391 0.176680 AATAGCGGCCTGTGAGTGAG 59.823 55.000 0.00 0.00 0.00 3.51
4045 7392 2.303549 ATAGCGGCCTGTGAGTGAGC 62.304 60.000 0.00 0.00 0.00 4.26
4048 7395 4.767255 GGCCTGTGAGTGAGCCGG 62.767 72.222 0.00 0.00 35.30 6.13
4066 7413 4.530857 CGCTAGTTCGGCCCCTGG 62.531 72.222 0.00 0.00 0.00 4.45
4067 7414 4.176752 GCTAGTTCGGCCCCTGGG 62.177 72.222 5.50 5.50 38.57 4.45
4069 7416 4.342086 TAGTTCGGCCCCTGGGGT 62.342 66.667 31.95 14.37 46.51 4.95
4070 7417 3.876255 TAGTTCGGCCCCTGGGGTT 62.876 63.158 31.95 13.57 46.51 4.11
4071 7418 4.295199 GTTCGGCCCCTGGGGTTT 62.295 66.667 31.95 0.00 46.51 3.27
4072 7419 4.293671 TTCGGCCCCTGGGGTTTG 62.294 66.667 31.95 21.24 46.51 2.93
4075 7422 4.248649 GGCCCCTGGGGTTTGGTT 62.249 66.667 31.95 0.00 46.51 3.67
4076 7423 2.603473 GCCCCTGGGGTTTGGTTC 60.603 66.667 31.95 10.57 46.51 3.62
4077 7424 2.282887 CCCCTGGGGTTTGGTTCG 60.283 66.667 24.54 0.00 38.25 3.95
4078 7425 2.518933 CCCTGGGGTTTGGTTCGT 59.481 61.111 4.27 0.00 0.00 3.85
4079 7426 1.152631 CCCTGGGGTTTGGTTCGTT 60.153 57.895 4.27 0.00 0.00 3.85
4080 7427 0.757561 CCCTGGGGTTTGGTTCGTTT 60.758 55.000 4.27 0.00 0.00 3.60
4081 7428 1.116308 CCTGGGGTTTGGTTCGTTTT 58.884 50.000 0.00 0.00 0.00 2.43
4082 7429 1.067974 CCTGGGGTTTGGTTCGTTTTC 59.932 52.381 0.00 0.00 0.00 2.29
4083 7430 1.751924 CTGGGGTTTGGTTCGTTTTCA 59.248 47.619 0.00 0.00 0.00 2.69
4084 7431 1.751924 TGGGGTTTGGTTCGTTTTCAG 59.248 47.619 0.00 0.00 0.00 3.02
4085 7432 1.752498 GGGGTTTGGTTCGTTTTCAGT 59.248 47.619 0.00 0.00 0.00 3.41
4086 7433 2.223641 GGGGTTTGGTTCGTTTTCAGTC 60.224 50.000 0.00 0.00 0.00 3.51
4087 7434 2.540157 GGGTTTGGTTCGTTTTCAGTCG 60.540 50.000 0.00 0.00 0.00 4.18
4088 7435 2.106418 GTTTGGTTCGTTTTCAGTCGC 58.894 47.619 0.00 0.00 0.00 5.19
4089 7436 1.370609 TTGGTTCGTTTTCAGTCGCA 58.629 45.000 0.00 0.00 0.00 5.10
4090 7437 0.653636 TGGTTCGTTTTCAGTCGCAC 59.346 50.000 0.00 0.00 0.00 5.34
4091 7438 0.382636 GGTTCGTTTTCAGTCGCACG 60.383 55.000 0.00 0.00 0.00 5.34
4092 7439 0.985416 GTTCGTTTTCAGTCGCACGC 60.985 55.000 0.00 0.00 32.59 5.34
4093 7440 1.422179 TTCGTTTTCAGTCGCACGCA 61.422 50.000 0.00 0.00 32.59 5.24
4094 7441 1.011684 CGTTTTCAGTCGCACGCAA 60.012 52.632 0.00 0.00 0.00 4.85
4095 7442 0.587737 CGTTTTCAGTCGCACGCAAA 60.588 50.000 0.00 0.00 0.00 3.68
4096 7443 0.837605 GTTTTCAGTCGCACGCAAAC 59.162 50.000 0.00 0.00 0.00 2.93
4098 7445 2.368131 TTTCAGTCGCACGCAAACGG 62.368 55.000 0.00 0.00 46.04 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 45 2.480419 CGTGCCTCTCGTGAAAGAAAAT 59.520 45.455 0.00 0.00 0.00 1.82
104 116 1.543429 CCTTTCCGAAAGAGGCACACT 60.543 52.381 20.43 0.00 41.02 3.55
106 118 0.762418 TCCTTTCCGAAAGAGGCACA 59.238 50.000 20.43 0.00 41.02 4.57
191 211 2.034053 GCCTTTGACGAAATCACAACCA 59.966 45.455 0.00 0.00 36.92 3.67
216 236 0.951040 CTTTCCGAAAGAGGCACGCT 60.951 55.000 14.72 0.00 43.09 5.07
239 259 0.466739 ACCAGGAACACGGGTTTTCC 60.467 55.000 3.63 1.48 46.05 3.13
240 260 3.105187 ACCAGGAACACGGGTTTTC 57.895 52.632 3.63 0.00 46.05 2.29
338 363 2.435938 GCCGTTGGATTCCTCGCA 60.436 61.111 3.95 0.00 0.00 5.10
435 462 1.896660 GCTTGTCGCAACCTGGGAA 60.897 57.895 0.00 0.00 41.08 3.97
453 490 0.813610 TGCGACAAGTGGACAAGTGG 60.814 55.000 0.00 0.00 0.00 4.00
454 491 1.013596 TTGCGACAAGTGGACAAGTG 58.986 50.000 0.00 0.00 0.00 3.16
455 492 1.014352 GTTGCGACAAGTGGACAAGT 58.986 50.000 0.00 0.00 0.00 3.16
457 494 1.098712 GGGTTGCGACAAGTGGACAA 61.099 55.000 6.39 0.00 0.00 3.18
459 496 2.604174 CGGGTTGCGACAAGTGGAC 61.604 63.158 6.39 0.00 0.00 4.02
476 523 2.266554 GAGATCACTCCAACTTCTGCG 58.733 52.381 0.00 0.00 37.19 5.18
500 547 8.461222 GGAGAGAGTAGTTAAGGAGTACTTTTC 58.539 40.741 0.00 0.00 43.10 2.29
502 549 6.598850 CGGAGAGAGTAGTTAAGGAGTACTTT 59.401 42.308 0.00 0.00 43.10 2.66
521 568 8.494016 AAAGACAATTATTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
522 569 8.319146 AGAAAGACAATTATTTAGGAACGGAGA 58.681 33.333 0.00 0.00 0.00 3.71
523 570 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
524 571 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
525 572 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
538 585 9.566432 ACTTGTTGAAATCTCTAGAAAGACAAT 57.434 29.630 0.00 0.00 0.00 2.71
539 586 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
540 587 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
541 588 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
542 589 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
543 590 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
544 591 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
545 592 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
546 593 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
547 594 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
548 595 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
549 596 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
550 597 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
551 598 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
552 599 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
553 600 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
554 601 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
555 602 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
556 603 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
557 604 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
558 605 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
559 606 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
560 607 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
561 608 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
562 609 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
563 610 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
564 611 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
565 612 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
566 613 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
567 614 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
568 615 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
569 616 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
570 617 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
571 618 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
572 619 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
573 620 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
574 621 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
575 622 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
576 623 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
587 634 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
588 635 9.856488 GTAGACATGTTTTAGAGTGTAGATTCA 57.144 33.333 0.00 0.00 0.00 2.57
589 636 9.856488 TGTAGACATGTTTTAGAGTGTAGATTC 57.144 33.333 0.00 0.00 0.00 2.52
595 642 9.587772 GATGTATGTAGACATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 40.18 3.55
596 643 9.809096 AGATGTATGTAGACATGTTTTAGAGTG 57.191 33.333 0.00 0.00 40.18 3.51
597 644 9.809096 CAGATGTATGTAGACATGTTTTAGAGT 57.191 33.333 0.00 0.00 40.18 3.24
598 645 9.809096 ACAGATGTATGTAGACATGTTTTAGAG 57.191 33.333 0.00 0.00 40.18 2.43
618 665 9.987272 TCTCAAATGGACTATAACATACAGATG 57.013 33.333 0.00 0.00 39.16 2.90
620 667 9.987272 CATCTCAAATGGACTATAACATACAGA 57.013 33.333 0.00 0.00 0.00 3.41
621 668 9.212641 CCATCTCAAATGGACTATAACATACAG 57.787 37.037 0.00 0.00 41.64 2.74
622 669 7.661437 GCCATCTCAAATGGACTATAACATACA 59.339 37.037 8.23 0.00 41.64 2.29
623 670 7.880195 AGCCATCTCAAATGGACTATAACATAC 59.120 37.037 8.23 0.00 41.64 2.39
624 671 7.977818 AGCCATCTCAAATGGACTATAACATA 58.022 34.615 8.23 0.00 41.64 2.29
625 672 6.845908 AGCCATCTCAAATGGACTATAACAT 58.154 36.000 8.23 0.00 41.64 2.71
626 673 6.252599 AGCCATCTCAAATGGACTATAACA 57.747 37.500 8.23 0.00 41.64 2.41
627 674 7.671302 TCTAGCCATCTCAAATGGACTATAAC 58.329 38.462 8.23 0.00 41.64 1.89
628 675 7.855784 TCTAGCCATCTCAAATGGACTATAA 57.144 36.000 8.23 0.00 41.64 0.98
629 676 7.855784 TTCTAGCCATCTCAAATGGACTATA 57.144 36.000 8.23 0.55 41.64 1.31
630 677 6.753913 TTCTAGCCATCTCAAATGGACTAT 57.246 37.500 8.23 0.00 41.64 2.12
631 678 6.408548 CCTTTCTAGCCATCTCAAATGGACTA 60.409 42.308 8.23 7.79 41.64 2.59
632 679 5.435291 CTTTCTAGCCATCTCAAATGGACT 58.565 41.667 8.23 7.12 41.64 3.85
633 680 4.578105 CCTTTCTAGCCATCTCAAATGGAC 59.422 45.833 8.23 0.19 41.64 4.02
634 681 4.785301 CCTTTCTAGCCATCTCAAATGGA 58.215 43.478 8.23 0.00 41.64 3.41
635 682 3.317430 GCCTTTCTAGCCATCTCAAATGG 59.683 47.826 0.00 0.00 41.99 3.16
636 683 3.949754 TGCCTTTCTAGCCATCTCAAATG 59.050 43.478 0.00 0.00 0.00 2.32
637 684 4.240881 TGCCTTTCTAGCCATCTCAAAT 57.759 40.909 0.00 0.00 0.00 2.32
638 685 3.719268 TGCCTTTCTAGCCATCTCAAA 57.281 42.857 0.00 0.00 0.00 2.69
639 686 3.719268 TTGCCTTTCTAGCCATCTCAA 57.281 42.857 0.00 0.00 0.00 3.02
640 687 3.939740 ATTGCCTTTCTAGCCATCTCA 57.060 42.857 0.00 0.00 0.00 3.27
641 688 6.890979 AATAATTGCCTTTCTAGCCATCTC 57.109 37.500 0.00 0.00 0.00 2.75
642 689 6.041296 CCAAATAATTGCCTTTCTAGCCATCT 59.959 38.462 0.00 0.00 35.10 2.90
643 690 6.218746 CCAAATAATTGCCTTTCTAGCCATC 58.781 40.000 0.00 0.00 35.10 3.51
644 691 5.070847 CCCAAATAATTGCCTTTCTAGCCAT 59.929 40.000 0.00 0.00 35.10 4.40
645 692 4.405358 CCCAAATAATTGCCTTTCTAGCCA 59.595 41.667 0.00 0.00 35.10 4.75
646 693 4.649218 TCCCAAATAATTGCCTTTCTAGCC 59.351 41.667 0.00 0.00 35.10 3.93
647 694 5.852282 TCCCAAATAATTGCCTTTCTAGC 57.148 39.130 0.00 0.00 35.10 3.42
648 695 6.265577 CGTTCCCAAATAATTGCCTTTCTAG 58.734 40.000 0.00 0.00 35.10 2.43
649 696 5.126384 CCGTTCCCAAATAATTGCCTTTCTA 59.874 40.000 0.00 0.00 35.10 2.10
650 697 4.081697 CCGTTCCCAAATAATTGCCTTTCT 60.082 41.667 0.00 0.00 35.10 2.52
651 698 4.081917 TCCGTTCCCAAATAATTGCCTTTC 60.082 41.667 0.00 0.00 35.10 2.62
652 699 3.835395 TCCGTTCCCAAATAATTGCCTTT 59.165 39.130 0.00 0.00 35.10 3.11
653 700 3.436243 TCCGTTCCCAAATAATTGCCTT 58.564 40.909 0.00 0.00 35.10 4.35
654 701 3.023832 CTCCGTTCCCAAATAATTGCCT 58.976 45.455 0.00 0.00 35.10 4.75
655 702 2.100749 CCTCCGTTCCCAAATAATTGCC 59.899 50.000 0.00 0.00 35.10 4.52
656 703 2.100749 CCCTCCGTTCCCAAATAATTGC 59.899 50.000 0.00 0.00 35.10 3.56
657 704 3.626930 TCCCTCCGTTCCCAAATAATTG 58.373 45.455 0.00 0.00 36.25 2.32
658 705 3.268595 ACTCCCTCCGTTCCCAAATAATT 59.731 43.478 0.00 0.00 0.00 1.40
659 706 2.850568 ACTCCCTCCGTTCCCAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
660 707 2.271777 ACTCCCTCCGTTCCCAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
661 708 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
662 709 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
663 710 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
664 711 1.961133 AATACTCCCTCCGTTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
665 712 2.767960 GTTAATACTCCCTCCGTTCCCA 59.232 50.000 0.00 0.00 0.00 4.37
666 713 3.036819 AGTTAATACTCCCTCCGTTCCC 58.963 50.000 0.00 0.00 0.00 3.97
667 714 4.892345 ACTAGTTAATACTCCCTCCGTTCC 59.108 45.833 0.00 0.00 35.78 3.62
668 715 5.591877 TCACTAGTTAATACTCCCTCCGTTC 59.408 44.000 0.00 0.00 35.78 3.95
669 716 5.513233 TCACTAGTTAATACTCCCTCCGTT 58.487 41.667 0.00 0.00 35.78 4.44
670 717 5.121380 TCACTAGTTAATACTCCCTCCGT 57.879 43.478 0.00 0.00 35.78 4.69
671 718 6.651975 AATCACTAGTTAATACTCCCTCCG 57.348 41.667 0.00 0.00 35.78 4.63
672 719 7.146648 CGAAATCACTAGTTAATACTCCCTCC 58.853 42.308 0.00 0.00 35.78 4.30
673 720 6.641723 GCGAAATCACTAGTTAATACTCCCTC 59.358 42.308 0.00 0.00 35.78 4.30
674 721 6.514063 GCGAAATCACTAGTTAATACTCCCT 58.486 40.000 0.00 0.00 35.78 4.20
675 722 5.401674 CGCGAAATCACTAGTTAATACTCCC 59.598 44.000 0.00 0.00 35.78 4.30
676 723 5.107951 GCGCGAAATCACTAGTTAATACTCC 60.108 44.000 12.10 0.00 35.78 3.85
677 724 5.107951 GGCGCGAAATCACTAGTTAATACTC 60.108 44.000 12.10 0.00 35.78 2.59
678 725 4.743644 GGCGCGAAATCACTAGTTAATACT 59.256 41.667 12.10 0.00 38.44 2.12
679 726 4.743644 AGGCGCGAAATCACTAGTTAATAC 59.256 41.667 12.10 0.00 0.00 1.89
680 727 4.743151 CAGGCGCGAAATCACTAGTTAATA 59.257 41.667 12.10 0.00 0.00 0.98
681 728 3.555956 CAGGCGCGAAATCACTAGTTAAT 59.444 43.478 12.10 0.00 0.00 1.40
682 729 2.927477 CAGGCGCGAAATCACTAGTTAA 59.073 45.455 12.10 0.00 0.00 2.01
683 730 2.536365 CAGGCGCGAAATCACTAGTTA 58.464 47.619 12.10 0.00 0.00 2.24
684 731 1.359848 CAGGCGCGAAATCACTAGTT 58.640 50.000 12.10 0.00 0.00 2.24
685 732 1.084370 GCAGGCGCGAAATCACTAGT 61.084 55.000 12.10 0.00 0.00 2.57
686 733 1.638467 GCAGGCGCGAAATCACTAG 59.362 57.895 12.10 0.00 0.00 2.57
687 734 1.813753 GGCAGGCGCGAAATCACTA 60.814 57.895 12.10 0.00 39.92 2.74
688 735 3.127533 GGCAGGCGCGAAATCACT 61.128 61.111 12.10 0.00 39.92 3.41
689 736 4.520846 CGGCAGGCGCGAAATCAC 62.521 66.667 12.10 0.00 39.92 3.06
691 738 4.223964 GACGGCAGGCGCGAAATC 62.224 66.667 17.72 1.82 39.92 2.17
692 739 3.365291 TAGACGGCAGGCGCGAAAT 62.365 57.895 17.72 0.00 39.92 2.17
693 740 3.982372 CTAGACGGCAGGCGCGAAA 62.982 63.158 17.72 0.00 39.92 3.46
694 741 4.492160 CTAGACGGCAGGCGCGAA 62.492 66.667 17.72 0.27 39.92 4.70
706 753 1.010419 TTTTTCGGCCGACGCTAGAC 61.010 55.000 31.19 0.00 43.86 2.59
707 754 1.010419 GTTTTTCGGCCGACGCTAGA 61.010 55.000 31.19 9.62 43.86 2.43
708 755 1.286354 TGTTTTTCGGCCGACGCTAG 61.286 55.000 31.19 0.00 43.86 3.42
709 756 0.879400 TTGTTTTTCGGCCGACGCTA 60.879 50.000 31.19 11.03 43.86 4.26
710 757 2.113131 CTTGTTTTTCGGCCGACGCT 62.113 55.000 31.19 0.00 43.86 5.07
711 758 1.724581 CTTGTTTTTCGGCCGACGC 60.725 57.895 31.19 18.10 43.86 5.19
712 759 0.110823 CTCTTGTTTTTCGGCCGACG 60.111 55.000 31.19 10.26 46.11 5.12
713 760 0.942252 ACTCTTGTTTTTCGGCCGAC 59.058 50.000 31.19 18.22 0.00 4.79
714 761 0.941542 CACTCTTGTTTTTCGGCCGA 59.058 50.000 27.28 27.28 0.00 5.54
715 762 0.660300 GCACTCTTGTTTTTCGGCCG 60.660 55.000 22.12 22.12 0.00 6.13
716 763 0.383949 TGCACTCTTGTTTTTCGGCC 59.616 50.000 0.00 0.00 0.00 6.13
717 764 2.030805 AGATGCACTCTTGTTTTTCGGC 60.031 45.455 0.00 0.00 0.00 5.54
718 765 3.904136 AGATGCACTCTTGTTTTTCGG 57.096 42.857 0.00 0.00 0.00 4.30
719 766 5.514279 AGAAAGATGCACTCTTGTTTTTCG 58.486 37.500 10.78 0.00 43.60 3.46
720 767 5.622856 CGAGAAAGATGCACTCTTGTTTTTC 59.377 40.000 10.78 2.45 43.60 2.29
802 852 1.375523 AAGGCGGTGCGGTCTTTAG 60.376 57.895 0.00 0.00 0.00 1.85
813 863 1.173913 GGTTCTATTTGCAAGGCGGT 58.826 50.000 0.00 0.00 0.00 5.68
877 927 0.816373 GGTACCTGAGAAGGACGACC 59.184 60.000 4.06 0.00 0.00 4.79
957 1016 4.466015 ACCAAAAGAAGGAGTTTGAAGCAA 59.534 37.500 0.00 0.00 36.96 3.91
960 1019 6.183360 GCAAAACCAAAAGAAGGAGTTTGAAG 60.183 38.462 13.37 0.00 36.96 3.02
1137 1199 1.587613 CAACCAAAACACGTGGGCG 60.588 57.895 21.57 5.03 40.75 6.13
1138 1200 0.108567 AACAACCAAAACACGTGGGC 60.109 50.000 21.57 0.00 40.75 5.36
1139 1201 1.202582 TGAACAACCAAAACACGTGGG 59.797 47.619 21.57 13.66 40.75 4.61
1156 1218 3.996363 CGGAACACATCATCTGAACTGAA 59.004 43.478 0.00 0.00 0.00 3.02
1158 1220 2.674852 CCGGAACACATCATCTGAACTG 59.325 50.000 0.00 0.00 0.00 3.16
1213 1275 1.418637 ACTACTCGGAAAGGCAAACCA 59.581 47.619 0.00 0.00 39.06 3.67
1218 1280 1.272490 CAGACACTACTCGGAAAGGCA 59.728 52.381 0.00 0.00 0.00 4.75
1226 1288 4.624336 ACTTAGCATCAGACACTACTCG 57.376 45.455 0.00 0.00 0.00 4.18
1234 1344 4.266502 CACGCTTAGAACTTAGCATCAGAC 59.733 45.833 12.13 0.00 37.23 3.51
1276 1388 4.976224 AAATTAGGAATACACCGCAACC 57.024 40.909 0.00 0.00 34.73 3.77
1300 1412 3.997021 CACTTCGAAGAACCATTGCTAGT 59.003 43.478 31.08 1.62 45.90 2.57
1301 1413 3.372206 CCACTTCGAAGAACCATTGCTAG 59.628 47.826 31.08 0.91 45.90 3.42
1303 1415 2.154462 CCACTTCGAAGAACCATTGCT 58.846 47.619 31.08 2.56 45.90 3.91
1312 1437 3.006537 CCACTTTCCTACCACTTCGAAGA 59.993 47.826 31.08 8.14 0.00 2.87
1316 1441 3.326747 CTTCCACTTTCCTACCACTTCG 58.673 50.000 0.00 0.00 0.00 3.79
1320 1445 1.073284 TGCCTTCCACTTTCCTACCAC 59.927 52.381 0.00 0.00 0.00 4.16
1338 1464 4.731773 GCAACACATTTCTACAGGCTATGC 60.732 45.833 0.00 0.00 0.00 3.14
1361 1523 4.620982 GGATCCCAACACAAAAGAAACAG 58.379 43.478 0.00 0.00 0.00 3.16
1374 1536 6.183360 CCTTCAAATTAACTACGGATCCCAAC 60.183 42.308 6.06 0.00 0.00 3.77
1449 1619 3.737266 GCACCAAGTGTTCAAATGATGTG 59.263 43.478 0.00 0.00 35.75 3.21
1484 1660 6.594284 AAAGAACAGCAAAGCTCAAAATTC 57.406 33.333 0.00 0.00 36.40 2.17
1502 1678 9.216117 GCTAGATAGAAACAGTAACCAAAAGAA 57.784 33.333 0.00 0.00 0.00 2.52
1526 1703 2.358322 TTCCTTCCTTTCAAACCGCT 57.642 45.000 0.00 0.00 0.00 5.52
1580 1774 3.569701 TCCCAATGCTCACTGAAGAAAAC 59.430 43.478 0.00 0.00 0.00 2.43
1633 1827 2.135933 GACGGCCACAATGCTATACTC 58.864 52.381 2.24 0.00 0.00 2.59
1643 1837 2.515057 AGTTTGCGACGGCCACAA 60.515 55.556 2.24 0.00 38.85 3.33
1725 1922 3.963374 TCTAGGCAAGCACTCATACTCAT 59.037 43.478 0.00 0.00 0.00 2.90
1848 2085 7.052248 ACTACAGCCACCAATTAAGTATAACC 58.948 38.462 0.00 0.00 0.00 2.85
1883 2120 9.647797 TTATACGAGAAGTTAAATGCAGAAGAA 57.352 29.630 0.00 0.00 0.00 2.52
1957 2917 5.368256 AACAGATGCTCTTGAAACATCAC 57.632 39.130 12.69 0.00 42.12 3.06
1975 2939 5.679734 AGATGTTGAGTGTAGCAAAACAG 57.320 39.130 0.00 0.00 34.50 3.16
2016 2980 5.350633 TGTTTTGAAAAAGAGCACTCCATG 58.649 37.500 0.00 0.00 0.00 3.66
2082 3046 9.326489 ACACATTAGTCCATATGTAGTCCATAT 57.674 33.333 1.24 0.00 45.67 1.78
2083 3047 8.585018 CACACATTAGTCCATATGTAGTCCATA 58.415 37.037 1.24 0.00 40.27 2.74
2096 3060 5.493133 GTGTTTGTTCACACATTAGTCCA 57.507 39.130 0.00 0.00 45.57 4.02
2206 3171 8.735303 TTTTGTGTGGTGAATCAATATAAACG 57.265 30.769 0.00 0.00 0.00 3.60
2335 3300 7.004555 TCTGATTACATCACTACACCACTTT 57.995 36.000 0.00 0.00 35.06 2.66
2336 3301 6.605471 TCTGATTACATCACTACACCACTT 57.395 37.500 0.00 0.00 35.06 3.16
2337 3302 6.605471 TTCTGATTACATCACTACACCACT 57.395 37.500 0.00 0.00 35.06 4.00
2338 3303 7.667043 TTTTCTGATTACATCACTACACCAC 57.333 36.000 0.00 0.00 35.06 4.16
2417 3728 6.592607 CGGGAATAAGCTACAACTACAAGAAA 59.407 38.462 0.00 0.00 0.00 2.52
2441 3752 0.647410 CTAAAGCACGATGCCAGTCG 59.353 55.000 6.39 2.25 46.52 4.18
2480 3802 9.952188 AAGAAAGACAAAAGAAGTTTAGCATAC 57.048 29.630 0.00 0.00 0.00 2.39
2648 3980 2.372172 TCCCTTGAACTTTCTCCTCACC 59.628 50.000 0.00 0.00 0.00 4.02
2823 4155 3.141398 TCTTGACACCAATCAGCACTTC 58.859 45.455 0.00 0.00 0.00 3.01
2825 4157 2.880890 GTTCTTGACACCAATCAGCACT 59.119 45.455 0.00 0.00 0.00 4.40
2849 4181 7.604164 TGAAGAACCATCTAACTTGAGAACATC 59.396 37.037 0.00 0.00 33.77 3.06
2852 4184 6.931840 AGTGAAGAACCATCTAACTTGAGAAC 59.068 38.462 0.00 0.00 33.77 3.01
2892 4224 1.948834 TGTTGACACCAATCAGCACAG 59.051 47.619 0.00 0.00 35.21 3.66
2944 4276 9.362539 CAATAAAAGCAATGCAAGAGTTAATCT 57.637 29.630 8.35 0.00 41.27 2.40
2960 4292 2.961741 TGTCCTGTTGGCAATAAAAGCA 59.038 40.909 1.92 0.00 0.00 3.91
3047 4379 4.019792 TGTGACAACAATATCCAGCTGT 57.980 40.909 13.81 0.00 31.82 4.40
3125 4458 1.185315 ACAAGCAAAGCGGCCATAAT 58.815 45.000 2.24 0.00 0.00 1.28
3224 4557 8.034804 ACCATTAACAAAATTTTAGCCTGCTAG 58.965 33.333 2.44 0.00 0.00 3.42
3226 4559 6.768483 ACCATTAACAAAATTTTAGCCTGCT 58.232 32.000 2.44 0.00 0.00 4.24
3261 4594 6.705863 AGAGACAAAGCAAGTTTCTGATTT 57.294 33.333 0.00 0.00 35.37 2.17
3341 4674 7.984050 ACTGAACATGGATCATTAGTCAGTTAG 59.016 37.037 12.31 0.00 31.70 2.34
3348 4682 6.042777 CACGTACTGAACATGGATCATTAGT 58.957 40.000 0.00 0.00 0.00 2.24
3393 4727 8.016801 TCTTTGAACGTTCGGATTAAAATAACC 58.983 33.333 22.48 0.00 0.00 2.85
3397 4731 7.198306 ACTCTTTGAACGTTCGGATTAAAAT 57.802 32.000 22.48 4.18 0.00 1.82
3402 4736 4.021719 TCCTACTCTTTGAACGTTCGGATT 60.022 41.667 22.48 15.73 0.00 3.01
3452 6787 9.573133 CAAAGTGTATTTCCCAAATCAATACTC 57.427 33.333 0.00 0.00 35.33 2.59
3454 6789 8.311109 ACCAAAGTGTATTTCCCAAATCAATAC 58.689 33.333 0.00 0.00 35.01 1.89
3455 6790 8.429237 ACCAAAGTGTATTTCCCAAATCAATA 57.571 30.769 0.00 0.00 32.38 1.90
3456 6791 7.315066 ACCAAAGTGTATTTCCCAAATCAAT 57.685 32.000 0.00 0.00 32.38 2.57
3457 6792 6.739331 ACCAAAGTGTATTTCCCAAATCAA 57.261 33.333 0.00 0.00 32.38 2.57
3458 6793 6.239458 GGAACCAAAGTGTATTTCCCAAATCA 60.239 38.462 0.00 0.00 31.19 2.57
3459 6794 6.014584 AGGAACCAAAGTGTATTTCCCAAATC 60.015 38.462 0.00 0.00 37.09 2.17
3460 6795 5.843969 AGGAACCAAAGTGTATTTCCCAAAT 59.156 36.000 0.00 0.00 37.09 2.32
3461 6796 5.069781 CAGGAACCAAAGTGTATTTCCCAAA 59.930 40.000 0.00 0.00 37.09 3.28
3462 6797 4.586841 CAGGAACCAAAGTGTATTTCCCAA 59.413 41.667 0.00 0.00 37.09 4.12
3463 6798 4.148838 CAGGAACCAAAGTGTATTTCCCA 58.851 43.478 0.00 0.00 37.09 4.37
3464 6799 3.509967 CCAGGAACCAAAGTGTATTTCCC 59.490 47.826 0.00 0.00 37.09 3.97
3465 6800 4.149598 ACCAGGAACCAAAGTGTATTTCC 58.850 43.478 0.00 0.00 36.71 3.13
3466 6801 5.068591 ACAACCAGGAACCAAAGTGTATTTC 59.931 40.000 0.00 0.00 0.00 2.17
3467 6802 4.959839 ACAACCAGGAACCAAAGTGTATTT 59.040 37.500 0.00 0.00 0.00 1.40
3468 6803 4.542697 ACAACCAGGAACCAAAGTGTATT 58.457 39.130 0.00 0.00 0.00 1.89
3469 6804 4.178956 ACAACCAGGAACCAAAGTGTAT 57.821 40.909 0.00 0.00 0.00 2.29
3470 6805 3.655615 ACAACCAGGAACCAAAGTGTA 57.344 42.857 0.00 0.00 0.00 2.90
3471 6806 2.525105 ACAACCAGGAACCAAAGTGT 57.475 45.000 0.00 0.00 0.00 3.55
3472 6807 6.882140 TGTATATACAACCAGGAACCAAAGTG 59.118 38.462 13.24 0.00 32.40 3.16
3473 6808 7.023171 TGTATATACAACCAGGAACCAAAGT 57.977 36.000 13.24 0.00 32.40 2.66
3474 6809 7.228706 GGATGTATATACAACCAGGAACCAAAG 59.771 40.741 28.27 0.00 45.34 2.77
3475 6810 7.057894 GGATGTATATACAACCAGGAACCAAA 58.942 38.462 28.27 0.73 45.34 3.28
3476 6811 6.597562 GGATGTATATACAACCAGGAACCAA 58.402 40.000 28.27 1.12 45.34 3.67
3477 6812 6.182507 GGATGTATATACAACCAGGAACCA 57.817 41.667 28.27 1.36 45.34 3.67
3559 6894 9.382275 AGTGCAAAACAAAATCAAGTTTAATCT 57.618 25.926 0.00 0.00 36.98 2.40
3560 6895 9.424659 CAGTGCAAAACAAAATCAAGTTTAATC 57.575 29.630 0.00 0.00 36.98 1.75
3561 6896 8.397148 CCAGTGCAAAACAAAATCAAGTTTAAT 58.603 29.630 0.00 0.00 36.98 1.40
3562 6897 7.389053 ACCAGTGCAAAACAAAATCAAGTTTAA 59.611 29.630 0.00 0.00 36.98 1.52
3563 6898 6.876257 ACCAGTGCAAAACAAAATCAAGTTTA 59.124 30.769 0.00 0.00 36.98 2.01
3564 6899 5.704978 ACCAGTGCAAAACAAAATCAAGTTT 59.295 32.000 0.00 0.00 39.46 2.66
3565 6900 5.244755 ACCAGTGCAAAACAAAATCAAGTT 58.755 33.333 0.00 0.00 0.00 2.66
3566 6901 4.831107 ACCAGTGCAAAACAAAATCAAGT 58.169 34.783 0.00 0.00 0.00 3.16
3567 6902 5.799681 AACCAGTGCAAAACAAAATCAAG 57.200 34.783 0.00 0.00 0.00 3.02
3568 6903 7.856145 ATAAACCAGTGCAAAACAAAATCAA 57.144 28.000 0.00 0.00 0.00 2.57
3569 6904 8.948631 TTATAAACCAGTGCAAAACAAAATCA 57.051 26.923 0.00 0.00 0.00 2.57
3575 6910 9.383519 TGAAAATTTATAAACCAGTGCAAAACA 57.616 25.926 0.00 0.00 0.00 2.83
3578 6913 9.770097 TCATGAAAATTTATAAACCAGTGCAAA 57.230 25.926 0.00 0.00 0.00 3.68
3579 6914 9.770097 TTCATGAAAATTTATAAACCAGTGCAA 57.230 25.926 5.45 0.00 0.00 4.08
3580 6915 9.770097 TTTCATGAAAATTTATAAACCAGTGCA 57.230 25.926 18.45 0.00 0.00 4.57
3607 6942 4.141733 CCCTGAAGTCAATGTTGGGTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
3608 6943 3.387699 CCCTGAAGTCAATGTTGGGTTTT 59.612 43.478 0.00 0.00 0.00 2.43
3609 6944 2.965147 CCCTGAAGTCAATGTTGGGTTT 59.035 45.455 0.00 0.00 0.00 3.27
3610 6945 2.176798 TCCCTGAAGTCAATGTTGGGTT 59.823 45.455 0.00 0.00 35.00 4.11
3611 6946 1.780309 TCCCTGAAGTCAATGTTGGGT 59.220 47.619 0.00 0.00 35.00 4.51
3612 6947 2.584835 TCCCTGAAGTCAATGTTGGG 57.415 50.000 0.00 0.00 34.76 4.12
3613 6948 4.935352 TTTTCCCTGAAGTCAATGTTGG 57.065 40.909 0.00 0.00 0.00 3.77
3647 6982 9.594936 AGTGAGTAGTGAGCTATAATAGGAAAT 57.405 33.333 0.00 0.00 0.00 2.17
3648 6983 8.998277 AGTGAGTAGTGAGCTATAATAGGAAA 57.002 34.615 0.00 0.00 0.00 3.13
3656 6991 8.630917 GGTCAAAATAGTGAGTAGTGAGCTATA 58.369 37.037 0.00 0.00 0.00 1.31
3657 6992 7.493367 GGTCAAAATAGTGAGTAGTGAGCTAT 58.507 38.462 0.00 0.00 0.00 2.97
3658 6993 6.404403 CGGTCAAAATAGTGAGTAGTGAGCTA 60.404 42.308 0.00 0.00 31.58 3.32
3659 6994 5.622460 CGGTCAAAATAGTGAGTAGTGAGCT 60.622 44.000 0.00 0.00 31.58 4.09
3660 6995 4.563184 CGGTCAAAATAGTGAGTAGTGAGC 59.437 45.833 0.00 0.00 0.00 4.26
3661 6996 5.950883 TCGGTCAAAATAGTGAGTAGTGAG 58.049 41.667 0.00 0.00 0.00 3.51
3662 6997 5.970317 TCGGTCAAAATAGTGAGTAGTGA 57.030 39.130 0.00 0.00 0.00 3.41
3663 6998 7.416154 TTTTCGGTCAAAATAGTGAGTAGTG 57.584 36.000 0.00 0.00 0.00 2.74
3664 6999 8.617290 AATTTTCGGTCAAAATAGTGAGTAGT 57.383 30.769 0.00 0.00 42.86 2.73
3665 7000 9.329913 CAAATTTTCGGTCAAAATAGTGAGTAG 57.670 33.333 0.00 0.00 42.86 2.57
3666 7001 8.842280 ACAAATTTTCGGTCAAAATAGTGAGTA 58.158 29.630 9.51 0.00 42.86 2.59
3667 7002 7.712797 ACAAATTTTCGGTCAAAATAGTGAGT 58.287 30.769 9.51 0.00 42.86 3.41
3668 7003 8.076178 AGACAAATTTTCGGTCAAAATAGTGAG 58.924 33.333 9.15 0.00 42.86 3.51
3669 7004 7.936584 AGACAAATTTTCGGTCAAAATAGTGA 58.063 30.769 9.15 0.00 42.86 3.41
3670 7005 8.574196 AAGACAAATTTTCGGTCAAAATAGTG 57.426 30.769 9.15 4.43 42.86 2.74
3671 7006 9.594478 AAAAGACAAATTTTCGGTCAAAATAGT 57.406 25.926 9.15 0.00 42.86 2.12
3674 7009 8.940952 TCAAAAAGACAAATTTTCGGTCAAAAT 58.059 25.926 9.15 0.00 45.15 1.82
3675 7010 8.311650 TCAAAAAGACAAATTTTCGGTCAAAA 57.688 26.923 9.15 0.00 38.38 2.44
3676 7011 7.891183 TCAAAAAGACAAATTTTCGGTCAAA 57.109 28.000 9.15 0.00 31.25 2.69
3677 7012 7.891183 TTCAAAAAGACAAATTTTCGGTCAA 57.109 28.000 9.15 0.00 31.25 3.18
3678 7013 7.891183 TTTCAAAAAGACAAATTTTCGGTCA 57.109 28.000 9.15 0.00 31.25 4.02
3679 7014 8.652463 TCTTTTCAAAAAGACAAATTTTCGGTC 58.348 29.630 12.68 0.00 46.80 4.79
3680 7015 8.541133 TCTTTTCAAAAAGACAAATTTTCGGT 57.459 26.923 12.68 0.00 46.80 4.69
3693 7028 7.755582 AACCATTCGACTTCTTTTCAAAAAG 57.244 32.000 8.60 8.60 45.17 2.27
3694 7029 9.810545 AATAACCATTCGACTTCTTTTCAAAAA 57.189 25.926 0.00 0.00 0.00 1.94
3695 7030 9.810545 AAATAACCATTCGACTTCTTTTCAAAA 57.189 25.926 0.00 0.00 0.00 2.44
3696 7031 9.810545 AAAATAACCATTCGACTTCTTTTCAAA 57.189 25.926 0.00 0.00 0.00 2.69
3697 7032 9.458374 GAAAATAACCATTCGACTTCTTTTCAA 57.542 29.630 0.00 0.00 32.88 2.69
3698 7033 8.846211 AGAAAATAACCATTCGACTTCTTTTCA 58.154 29.630 0.00 0.00 34.28 2.69
3699 7034 9.678941 AAGAAAATAACCATTCGACTTCTTTTC 57.321 29.630 0.00 0.00 29.33 2.29
3703 7038 9.463443 CAAAAAGAAAATAACCATTCGACTTCT 57.537 29.630 0.00 0.00 0.00 2.85
3704 7039 9.244799 ACAAAAAGAAAATAACCATTCGACTTC 57.755 29.630 0.00 0.00 0.00 3.01
3705 7040 9.030301 CACAAAAAGAAAATAACCATTCGACTT 57.970 29.630 0.00 0.00 0.00 3.01
3706 7041 7.651704 CCACAAAAAGAAAATAACCATTCGACT 59.348 33.333 0.00 0.00 0.00 4.18
3707 7042 7.650104 TCCACAAAAAGAAAATAACCATTCGAC 59.350 33.333 0.00 0.00 0.00 4.20
3708 7043 7.717568 TCCACAAAAAGAAAATAACCATTCGA 58.282 30.769 0.00 0.00 0.00 3.71
3709 7044 7.938563 TCCACAAAAAGAAAATAACCATTCG 57.061 32.000 0.00 0.00 0.00 3.34
3719 7054 9.277783 TGTGAGAAAAATTCCACAAAAAGAAAA 57.722 25.926 10.11 0.00 37.67 2.29
3720 7055 8.839310 TGTGAGAAAAATTCCACAAAAAGAAA 57.161 26.923 10.11 0.00 37.67 2.52
3721 7056 7.548780 CCTGTGAGAAAAATTCCACAAAAAGAA 59.451 33.333 12.29 0.00 39.01 2.52
3722 7057 7.041107 CCTGTGAGAAAAATTCCACAAAAAGA 58.959 34.615 12.29 0.00 39.01 2.52
3723 7058 6.818142 ACCTGTGAGAAAAATTCCACAAAAAG 59.182 34.615 12.29 7.11 39.01 2.27
3724 7059 6.706295 ACCTGTGAGAAAAATTCCACAAAAA 58.294 32.000 12.29 0.00 39.01 1.94
3725 7060 6.293004 ACCTGTGAGAAAAATTCCACAAAA 57.707 33.333 12.29 0.00 39.01 2.44
3726 7061 5.930837 ACCTGTGAGAAAAATTCCACAAA 57.069 34.783 12.29 0.00 39.01 2.83
3727 7062 8.698973 TTATACCTGTGAGAAAAATTCCACAA 57.301 30.769 12.29 3.36 39.01 3.33
3728 7063 8.877864 ATTATACCTGTGAGAAAAATTCCACA 57.122 30.769 11.31 11.31 38.01 4.17
3735 7070 9.886132 GACCTTCTATTATACCTGTGAGAAAAA 57.114 33.333 0.00 0.00 0.00 1.94
3736 7071 9.042450 TGACCTTCTATTATACCTGTGAGAAAA 57.958 33.333 0.00 0.00 0.00 2.29
3737 7072 8.603898 TGACCTTCTATTATACCTGTGAGAAA 57.396 34.615 0.00 0.00 0.00 2.52
3738 7073 8.603898 TTGACCTTCTATTATACCTGTGAGAA 57.396 34.615 0.00 0.00 0.00 2.87
3739 7074 7.839705 ACTTGACCTTCTATTATACCTGTGAGA 59.160 37.037 0.00 0.00 0.00 3.27
3740 7075 8.012957 ACTTGACCTTCTATTATACCTGTGAG 57.987 38.462 0.00 0.00 0.00 3.51
3741 7076 7.973048 ACTTGACCTTCTATTATACCTGTGA 57.027 36.000 0.00 0.00 0.00 3.58
3833 7168 8.485079 AACGTTTGGTTCCTGGTGTATATACAC 61.485 40.741 30.05 30.05 44.54 2.90
3834 7169 5.046448 ACGTTTGGTTCCTGGTGTATATACA 60.046 40.000 11.62 11.62 0.00 2.29
3835 7170 5.422145 ACGTTTGGTTCCTGGTGTATATAC 58.578 41.667 5.89 5.89 0.00 1.47
3836 7171 5.680594 ACGTTTGGTTCCTGGTGTATATA 57.319 39.130 0.00 0.00 0.00 0.86
3837 7172 4.563140 ACGTTTGGTTCCTGGTGTATAT 57.437 40.909 0.00 0.00 0.00 0.86
3838 7173 4.354893 AACGTTTGGTTCCTGGTGTATA 57.645 40.909 0.00 0.00 31.79 1.47
3839 7174 2.943036 ACGTTTGGTTCCTGGTGTAT 57.057 45.000 0.00 0.00 0.00 2.29
3840 7175 2.713863 AACGTTTGGTTCCTGGTGTA 57.286 45.000 0.00 0.00 31.79 2.90
3841 7176 3.581163 AACGTTTGGTTCCTGGTGT 57.419 47.368 0.00 0.00 31.79 4.16
3856 7191 3.482472 CGGAATCAATACAGACGAGAACG 59.518 47.826 0.00 0.00 45.75 3.95
3857 7192 3.797256 CCGGAATCAATACAGACGAGAAC 59.203 47.826 0.00 0.00 0.00 3.01
3858 7193 3.697542 TCCGGAATCAATACAGACGAGAA 59.302 43.478 0.00 0.00 0.00 2.87
3859 7194 3.284617 TCCGGAATCAATACAGACGAGA 58.715 45.455 0.00 0.00 0.00 4.04
3860 7195 3.710326 TCCGGAATCAATACAGACGAG 57.290 47.619 0.00 0.00 0.00 4.18
3861 7196 4.459390 TTTCCGGAATCAATACAGACGA 57.541 40.909 19.62 0.00 0.00 4.20
3862 7197 5.734855 ATTTTCCGGAATCAATACAGACG 57.265 39.130 19.62 0.00 0.00 4.18
3863 7198 8.674607 AGTTAATTTTCCGGAATCAATACAGAC 58.325 33.333 19.62 11.58 0.00 3.51
3864 7199 8.801882 AGTTAATTTTCCGGAATCAATACAGA 57.198 30.769 19.62 0.00 0.00 3.41
3865 7200 8.673711 TGAGTTAATTTTCCGGAATCAATACAG 58.326 33.333 19.62 0.00 0.00 2.74
3866 7201 8.568676 TGAGTTAATTTTCCGGAATCAATACA 57.431 30.769 19.62 9.20 0.00 2.29
3907 7251 6.350612 AGTCAGCTCTGGCTAACTAAACTTAG 60.351 42.308 1.61 0.00 44.59 2.18
3909 7253 4.284746 AGTCAGCTCTGGCTAACTAAACTT 59.715 41.667 1.61 0.00 44.59 2.66
3910 7254 3.835395 AGTCAGCTCTGGCTAACTAAACT 59.165 43.478 1.61 0.00 44.59 2.66
3911 7255 3.929610 CAGTCAGCTCTGGCTAACTAAAC 59.070 47.826 3.44 0.00 44.62 2.01
3987 7334 1.880340 CGAACGGCTGGAGATGCTC 60.880 63.158 0.00 0.00 0.00 4.26
3988 7335 2.185350 CGAACGGCTGGAGATGCT 59.815 61.111 0.00 0.00 0.00 3.79
3989 7336 2.892425 CCGAACGGCTGGAGATGC 60.892 66.667 0.00 0.00 0.00 3.91
4010 7357 1.724582 CTATTTTTCGGCGCCCTGGG 61.725 60.000 23.46 8.86 0.00 4.45
4011 7358 1.727467 CTATTTTTCGGCGCCCTGG 59.273 57.895 23.46 7.26 0.00 4.45
4012 7359 1.064134 GCTATTTTTCGGCGCCCTG 59.936 57.895 23.46 8.15 0.00 4.45
4013 7360 2.469516 CGCTATTTTTCGGCGCCCT 61.470 57.895 23.46 0.92 42.28 5.19
4014 7361 2.024163 CGCTATTTTTCGGCGCCC 59.976 61.111 23.46 2.84 42.28 6.13
4015 7362 2.024163 CCGCTATTTTTCGGCGCC 59.976 61.111 19.07 19.07 46.29 6.53
4020 7367 1.062587 CTCACAGGCCGCTATTTTTCG 59.937 52.381 0.00 0.00 0.00 3.46
4021 7368 2.084546 ACTCACAGGCCGCTATTTTTC 58.915 47.619 0.00 0.00 0.00 2.29
4022 7369 1.812571 CACTCACAGGCCGCTATTTTT 59.187 47.619 0.00 0.00 0.00 1.94
4023 7370 1.003118 TCACTCACAGGCCGCTATTTT 59.997 47.619 0.00 0.00 0.00 1.82
4024 7371 0.613260 TCACTCACAGGCCGCTATTT 59.387 50.000 0.00 0.00 0.00 1.40
4025 7372 0.176680 CTCACTCACAGGCCGCTATT 59.823 55.000 0.00 0.00 0.00 1.73
4026 7373 1.819229 CTCACTCACAGGCCGCTAT 59.181 57.895 0.00 0.00 0.00 2.97
4027 7374 3.006756 GCTCACTCACAGGCCGCTA 62.007 63.158 0.00 0.00 0.00 4.26
4028 7375 4.385405 GCTCACTCACAGGCCGCT 62.385 66.667 0.00 0.00 0.00 5.52
4031 7378 4.767255 CCGGCTCACTCACAGGCC 62.767 72.222 0.00 0.00 41.02 5.19
4049 7396 4.530857 CCAGGGGCCGAACTAGCG 62.531 72.222 0.00 0.00 0.00 4.26
4050 7397 4.176752 CCCAGGGGCCGAACTAGC 62.177 72.222 0.00 0.00 0.00 3.42
4051 7398 3.480133 CCCCAGGGGCCGAACTAG 61.480 72.222 13.35 0.00 35.35 2.57
4061 7408 0.757561 AAACGAACCAAACCCCAGGG 60.758 55.000 0.00 0.00 42.03 4.45
4062 7409 1.067974 GAAAACGAACCAAACCCCAGG 59.932 52.381 0.00 0.00 0.00 4.45
4063 7410 1.751924 TGAAAACGAACCAAACCCCAG 59.248 47.619 0.00 0.00 0.00 4.45
4064 7411 1.751924 CTGAAAACGAACCAAACCCCA 59.248 47.619 0.00 0.00 0.00 4.96
4065 7412 1.752498 ACTGAAAACGAACCAAACCCC 59.248 47.619 0.00 0.00 0.00 4.95
4066 7413 2.540157 CGACTGAAAACGAACCAAACCC 60.540 50.000 0.00 0.00 0.00 4.11
4067 7414 2.711885 CGACTGAAAACGAACCAAACC 58.288 47.619 0.00 0.00 0.00 3.27
4068 7415 2.106418 GCGACTGAAAACGAACCAAAC 58.894 47.619 0.00 0.00 0.00 2.93
4069 7416 1.738350 TGCGACTGAAAACGAACCAAA 59.262 42.857 0.00 0.00 0.00 3.28
4070 7417 1.062880 GTGCGACTGAAAACGAACCAA 59.937 47.619 0.00 0.00 32.62 3.67
4071 7418 0.653636 GTGCGACTGAAAACGAACCA 59.346 50.000 0.00 0.00 32.62 3.67
4072 7419 0.382636 CGTGCGACTGAAAACGAACC 60.383 55.000 0.00 0.00 38.27 3.62
4073 7420 0.985416 GCGTGCGACTGAAAACGAAC 60.985 55.000 0.00 0.00 38.27 3.95
4074 7421 1.274476 GCGTGCGACTGAAAACGAA 59.726 52.632 0.00 0.00 38.27 3.85
4075 7422 1.422179 TTGCGTGCGACTGAAAACGA 61.422 50.000 0.00 0.00 38.27 3.85
4076 7423 0.587737 TTTGCGTGCGACTGAAAACG 60.588 50.000 0.00 0.00 39.00 3.60
4077 7424 0.837605 GTTTGCGTGCGACTGAAAAC 59.162 50.000 0.00 0.00 0.00 2.43
4078 7425 0.587737 CGTTTGCGTGCGACTGAAAA 60.588 50.000 0.00 0.00 0.00 2.29
4079 7426 1.011684 CGTTTGCGTGCGACTGAAA 60.012 52.632 0.00 0.00 0.00 2.69
4080 7427 2.623718 CGTTTGCGTGCGACTGAA 59.376 55.556 0.00 0.00 0.00 3.02
4081 7428 3.334751 CCGTTTGCGTGCGACTGA 61.335 61.111 0.00 0.00 36.15 3.41
4082 7429 4.368808 CCCGTTTGCGTGCGACTG 62.369 66.667 0.00 0.00 36.15 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.