Multiple sequence alignment - TraesCS7B01G152100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G152100 chr7B 100.000 2237 0 0 1 2237 202354505 202356741 0.000000e+00 4132
1 TraesCS7B01G152100 chr7B 96.610 59 2 0 1431 1489 57837086 57837028 5.080000e-17 99
2 TraesCS7B01G152100 chr7A 96.844 1331 39 3 1 1329 475200423 475201752 0.000000e+00 2222
3 TraesCS7B01G152100 chr7A 83.158 760 67 25 1514 2237 243665282 243666016 2.420000e-179 638
4 TraesCS7B01G152100 chr5B 96.764 1329 41 2 1 1328 45945972 45944645 0.000000e+00 2215
5 TraesCS7B01G152100 chr1D 96.692 1330 39 2 1 1329 371593910 371592585 0.000000e+00 2207
6 TraesCS7B01G152100 chr1D 97.590 83 1 1 1341 1423 19957380 19957299 8.330000e-30 141
7 TraesCS7B01G152100 chr1D 97.590 83 1 1 1341 1423 108214679 108214598 8.330000e-30 141
8 TraesCS7B01G152100 chr1D 97.590 83 1 1 1341 1423 206072491 206072572 8.330000e-30 141
9 TraesCS7B01G152100 chr1D 97.590 83 1 1 1341 1423 254497343 254497262 8.330000e-30 141
10 TraesCS7B01G152100 chr1D 97.590 83 1 1 1341 1423 483915269 483915350 8.330000e-30 141
11 TraesCS7B01G152100 chr2B 96.252 1334 47 3 1 1332 359136092 359134760 0.000000e+00 2183
12 TraesCS7B01G152100 chr2B 95.751 1318 54 2 1 1317 381825972 381824656 0.000000e+00 2122
13 TraesCS7B01G152100 chr3B 95.561 1329 53 6 1 1327 366138654 366139978 0.000000e+00 2122
14 TraesCS7B01G152100 chr3B 95.455 66 3 0 1424 1489 201506276 201506341 3.040000e-19 106
15 TraesCS7B01G152100 chrUn 94.646 1326 69 2 1 1325 22794739 22796063 0.000000e+00 2054
16 TraesCS7B01G152100 chrUn 95.455 66 3 0 1424 1489 404957931 404957996 3.040000e-19 106
17 TraesCS7B01G152100 chr2D 94.586 1330 69 2 1 1327 381509695 381508366 0.000000e+00 2054
18 TraesCS7B01G152100 chr1B 94.432 1329 73 1 1 1328 301045439 301046767 0.000000e+00 2043
19 TraesCS7B01G152100 chr7D 89.098 743 53 18 1515 2237 230938845 230939579 0.000000e+00 898
20 TraesCS7B01G152100 chr5D 97.590 83 1 1 1341 1423 6201933 6202014 8.330000e-30 141
21 TraesCS7B01G152100 chr5D 97.590 83 1 1 1341 1423 240137052 240136971 8.330000e-30 141
22 TraesCS7B01G152100 chr4D 97.590 83 1 1 1341 1423 450421458 450421539 8.330000e-30 141
23 TraesCS7B01G152100 chr1A 97.590 83 1 1 1341 1423 112776687 112776768 8.330000e-30 141
24 TraesCS7B01G152100 chr4A 95.455 66 3 0 1424 1489 710248726 710248791 3.040000e-19 106
25 TraesCS7B01G152100 chr4A 93.939 66 4 0 1424 1489 677310056 677309991 1.410000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G152100 chr7B 202354505 202356741 2236 False 4132 4132 100.000 1 2237 1 chr7B.!!$F1 2236
1 TraesCS7B01G152100 chr7A 475200423 475201752 1329 False 2222 2222 96.844 1 1329 1 chr7A.!!$F2 1328
2 TraesCS7B01G152100 chr7A 243665282 243666016 734 False 638 638 83.158 1514 2237 1 chr7A.!!$F1 723
3 TraesCS7B01G152100 chr5B 45944645 45945972 1327 True 2215 2215 96.764 1 1328 1 chr5B.!!$R1 1327
4 TraesCS7B01G152100 chr1D 371592585 371593910 1325 True 2207 2207 96.692 1 1329 1 chr1D.!!$R4 1328
5 TraesCS7B01G152100 chr2B 359134760 359136092 1332 True 2183 2183 96.252 1 1332 1 chr2B.!!$R1 1331
6 TraesCS7B01G152100 chr2B 381824656 381825972 1316 True 2122 2122 95.751 1 1317 1 chr2B.!!$R2 1316
7 TraesCS7B01G152100 chr3B 366138654 366139978 1324 False 2122 2122 95.561 1 1327 1 chr3B.!!$F2 1326
8 TraesCS7B01G152100 chrUn 22794739 22796063 1324 False 2054 2054 94.646 1 1325 1 chrUn.!!$F1 1324
9 TraesCS7B01G152100 chr2D 381508366 381509695 1329 True 2054 2054 94.586 1 1327 1 chr2D.!!$R1 1326
10 TraesCS7B01G152100 chr1B 301045439 301046767 1328 False 2043 2043 94.432 1 1328 1 chr1B.!!$F1 1327
11 TraesCS7B01G152100 chr7D 230938845 230939579 734 False 898 898 89.098 1515 2237 1 chr7D.!!$F1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 915 1.408702 ACAAACGCCAAAATCAGCAGT 59.591 42.857 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2114 0.031994 AAAACACCATCAGCCAACGC 59.968 50.0 0.0 0.0 0.0 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 7.521509 AACGGCGATTGCTATATATTACTTC 57.478 36.000 16.62 0.00 42.25 3.01
217 218 5.867330 TCTGGTGGAAAATGCAAAATCAAT 58.133 33.333 0.00 0.00 0.00 2.57
620 621 1.760613 TCGTCAACCTTTGGAGTGAGT 59.239 47.619 0.00 0.00 0.00 3.41
726 727 1.514003 TACCGCGCACAATTTCTTGA 58.486 45.000 8.75 0.00 36.20 3.02
732 733 3.234386 GCGCACAATTTCTTGACCTTAC 58.766 45.455 0.30 0.00 36.20 2.34
825 827 4.590222 GGCCATCAACAATAGGATTTGGAT 59.410 41.667 0.00 0.00 0.00 3.41
849 857 4.530857 CCGGCTTCAGCGTAGGGG 62.531 72.222 0.00 0.00 43.26 4.79
850 858 3.771160 CGGCTTCAGCGTAGGGGT 61.771 66.667 0.00 0.00 43.26 4.95
851 859 2.669240 GGCTTCAGCGTAGGGGTT 59.331 61.111 0.00 0.00 43.26 4.11
852 860 1.745489 GGCTTCAGCGTAGGGGTTG 60.745 63.158 0.00 0.00 43.26 3.77
893 905 1.777101 GCTATGCAAACAAACGCCAA 58.223 45.000 0.00 0.00 0.00 4.52
903 915 1.408702 ACAAACGCCAAAATCAGCAGT 59.591 42.857 0.00 0.00 0.00 4.40
913 925 4.038402 CCAAAATCAGCAGTTCACCTTCTT 59.962 41.667 0.00 0.00 0.00 2.52
936 948 3.987547 TCCAATGTCGTTACACGGTTAA 58.012 40.909 0.00 0.00 42.81 2.01
960 973 6.669125 AGTTTGGGAATGATCAAAACATGA 57.331 33.333 17.76 0.00 43.67 3.07
1109 1123 4.222336 TCTTGGGAAATTTGGAAAGAGCA 58.778 39.130 0.00 0.00 0.00 4.26
1277 1291 4.178956 TGGCCAAGACTCTTAAACCTTT 57.821 40.909 0.61 0.00 0.00 3.11
1282 1296 6.439599 GCCAAGACTCTTAAACCTTTTTCTC 58.560 40.000 0.00 0.00 0.00 2.87
1298 1312 8.431222 ACCTTTTTCTCATTCAATGAAAATGGA 58.569 29.630 23.73 8.60 46.45 3.41
1350 1365 9.835389 AAAAACATTTTCAAATGAGGAGATCAA 57.165 25.926 17.33 0.00 46.72 2.57
1351 1366 9.835389 AAAACATTTTCAAATGAGGAGATCAAA 57.165 25.926 17.33 0.00 46.72 2.69
1352 1367 9.835389 AAACATTTTCAAATGAGGAGATCAAAA 57.165 25.926 17.33 0.00 46.72 2.44
1353 1368 9.835389 AACATTTTCAAATGAGGAGATCAAAAA 57.165 25.926 17.33 0.00 46.72 1.94
1354 1369 9.264719 ACATTTTCAAATGAGGAGATCAAAAAC 57.735 29.630 17.33 0.00 46.72 2.43
1355 1370 9.485206 CATTTTCAAATGAGGAGATCAAAAACT 57.515 29.630 6.43 0.00 46.72 2.66
1356 1371 8.876275 TTTTCAAATGAGGAGATCAAAAACTG 57.124 30.769 0.00 0.00 42.53 3.16
1357 1372 6.017400 TCAAATGAGGAGATCAAAAACTGC 57.983 37.500 0.00 0.00 42.53 4.40
1358 1373 5.771666 TCAAATGAGGAGATCAAAAACTGCT 59.228 36.000 0.00 0.00 42.53 4.24
1359 1374 6.942005 TCAAATGAGGAGATCAAAAACTGCTA 59.058 34.615 0.00 0.00 42.53 3.49
1360 1375 7.448161 TCAAATGAGGAGATCAAAAACTGCTAA 59.552 33.333 0.00 0.00 42.53 3.09
1361 1376 7.951347 AATGAGGAGATCAAAAACTGCTAAT 57.049 32.000 0.00 0.00 42.53 1.73
1362 1377 7.951347 ATGAGGAGATCAAAAACTGCTAATT 57.049 32.000 0.00 0.00 42.53 1.40
1363 1378 7.383102 TGAGGAGATCAAAAACTGCTAATTC 57.617 36.000 0.00 0.00 35.13 2.17
1364 1379 6.092670 TGAGGAGATCAAAAACTGCTAATTCG 59.907 38.462 0.00 0.00 35.13 3.34
1365 1380 5.940470 AGGAGATCAAAAACTGCTAATTCGT 59.060 36.000 0.00 0.00 33.36 3.85
1366 1381 7.103641 AGGAGATCAAAAACTGCTAATTCGTA 58.896 34.615 0.00 0.00 33.36 3.43
1367 1382 7.770897 AGGAGATCAAAAACTGCTAATTCGTAT 59.229 33.333 0.00 0.00 33.36 3.06
1368 1383 9.042008 GGAGATCAAAAACTGCTAATTCGTATA 57.958 33.333 0.00 0.00 0.00 1.47
1372 1387 8.889849 TCAAAAACTGCTAATTCGTATAAAGC 57.110 30.769 3.29 3.29 0.00 3.51
1373 1388 7.966204 TCAAAAACTGCTAATTCGTATAAAGCC 59.034 33.333 6.78 0.00 32.14 4.35
1374 1389 6.995511 AAACTGCTAATTCGTATAAAGCCA 57.004 33.333 6.78 0.00 32.14 4.75
1375 1390 7.568199 AAACTGCTAATTCGTATAAAGCCAT 57.432 32.000 6.78 0.00 32.14 4.40
1376 1391 7.568199 AACTGCTAATTCGTATAAAGCCATT 57.432 32.000 6.78 0.63 32.14 3.16
1377 1392 6.959361 ACTGCTAATTCGTATAAAGCCATTG 58.041 36.000 6.78 0.00 32.14 2.82
1378 1393 6.765989 ACTGCTAATTCGTATAAAGCCATTGA 59.234 34.615 6.78 0.00 32.14 2.57
1379 1394 7.041780 ACTGCTAATTCGTATAAAGCCATTGAG 60.042 37.037 6.78 1.63 32.14 3.02
1380 1395 6.080406 GCTAATTCGTATAAAGCCATTGAGC 58.920 40.000 0.00 0.00 0.00 4.26
1381 1396 5.438761 AATTCGTATAAAGCCATTGAGCC 57.561 39.130 0.00 0.00 0.00 4.70
1382 1397 3.552132 TCGTATAAAGCCATTGAGCCA 57.448 42.857 0.00 0.00 0.00 4.75
1383 1398 3.466836 TCGTATAAAGCCATTGAGCCAG 58.533 45.455 0.00 0.00 0.00 4.85
1384 1399 2.031682 CGTATAAAGCCATTGAGCCAGC 60.032 50.000 0.00 0.00 0.00 4.85
1385 1400 1.406903 ATAAAGCCATTGAGCCAGCC 58.593 50.000 0.00 0.00 0.00 4.85
1386 1401 0.684153 TAAAGCCATTGAGCCAGCCC 60.684 55.000 0.00 0.00 0.00 5.19
1387 1402 2.735151 AAAGCCATTGAGCCAGCCCA 62.735 55.000 0.00 0.00 0.00 5.36
1388 1403 2.681064 GCCATTGAGCCAGCCCAA 60.681 61.111 0.00 0.00 0.00 4.12
1389 1404 3.010413 GCCATTGAGCCAGCCCAAC 62.010 63.158 0.00 0.00 0.00 3.77
1390 1405 2.353610 CCATTGAGCCAGCCCAACC 61.354 63.158 0.00 0.00 0.00 3.77
1391 1406 1.607178 CATTGAGCCAGCCCAACCA 60.607 57.895 0.00 0.00 0.00 3.67
1392 1407 1.304713 ATTGAGCCAGCCCAACCAG 60.305 57.895 0.00 0.00 0.00 4.00
1393 1408 1.792757 ATTGAGCCAGCCCAACCAGA 61.793 55.000 0.00 0.00 0.00 3.86
1394 1409 2.005606 TTGAGCCAGCCCAACCAGAA 62.006 55.000 0.00 0.00 0.00 3.02
1395 1410 1.228552 GAGCCAGCCCAACCAGAAA 60.229 57.895 0.00 0.00 0.00 2.52
1396 1411 1.527433 GAGCCAGCCCAACCAGAAAC 61.527 60.000 0.00 0.00 0.00 2.78
1397 1412 1.531602 GCCAGCCCAACCAGAAACT 60.532 57.895 0.00 0.00 0.00 2.66
1398 1413 0.251165 GCCAGCCCAACCAGAAACTA 60.251 55.000 0.00 0.00 0.00 2.24
1399 1414 1.826385 CCAGCCCAACCAGAAACTAG 58.174 55.000 0.00 0.00 0.00 2.57
1400 1415 1.351017 CCAGCCCAACCAGAAACTAGA 59.649 52.381 0.00 0.00 0.00 2.43
1401 1416 2.616510 CCAGCCCAACCAGAAACTAGAG 60.617 54.545 0.00 0.00 0.00 2.43
1402 1417 1.003696 AGCCCAACCAGAAACTAGAGC 59.996 52.381 0.00 0.00 0.00 4.09
1403 1418 1.950954 GCCCAACCAGAAACTAGAGCC 60.951 57.143 0.00 0.00 0.00 4.70
1404 1419 1.676014 CCCAACCAGAAACTAGAGCCG 60.676 57.143 0.00 0.00 0.00 5.52
1405 1420 1.002087 CCAACCAGAAACTAGAGCCGT 59.998 52.381 0.00 0.00 0.00 5.68
1406 1421 2.069273 CAACCAGAAACTAGAGCCGTG 58.931 52.381 0.00 0.00 0.00 4.94
1407 1422 1.339097 ACCAGAAACTAGAGCCGTGT 58.661 50.000 0.00 0.00 0.00 4.49
1408 1423 1.000955 ACCAGAAACTAGAGCCGTGTG 59.999 52.381 0.00 0.00 0.00 3.82
1409 1424 1.071605 CAGAAACTAGAGCCGTGTGC 58.928 55.000 0.00 0.00 41.71 4.57
1410 1425 0.679505 AGAAACTAGAGCCGTGTGCA 59.320 50.000 0.00 0.00 44.83 4.57
1411 1426 1.276421 AGAAACTAGAGCCGTGTGCAT 59.724 47.619 0.00 0.00 44.83 3.96
1412 1427 2.076863 GAAACTAGAGCCGTGTGCATT 58.923 47.619 0.00 0.00 44.83 3.56
1413 1428 3.056107 AGAAACTAGAGCCGTGTGCATTA 60.056 43.478 0.00 0.00 44.83 1.90
1414 1429 3.543680 AACTAGAGCCGTGTGCATTAT 57.456 42.857 0.00 0.00 44.83 1.28
1415 1430 4.665833 AACTAGAGCCGTGTGCATTATA 57.334 40.909 0.00 0.00 44.83 0.98
1416 1431 4.873746 ACTAGAGCCGTGTGCATTATAT 57.126 40.909 0.00 0.00 44.83 0.86
1417 1432 4.560128 ACTAGAGCCGTGTGCATTATATG 58.440 43.478 0.00 0.00 44.83 1.78
1435 1450 9.208022 CATTATATGCACCGGGATAAGTATATG 57.792 37.037 6.32 0.00 30.67 1.78
1436 1451 6.808321 ATATGCACCGGGATAAGTATATGT 57.192 37.500 6.32 0.00 30.67 2.29
1437 1452 4.265904 TGCACCGGGATAAGTATATGTG 57.734 45.455 6.32 0.00 0.00 3.21
1438 1453 3.898741 TGCACCGGGATAAGTATATGTGA 59.101 43.478 6.32 0.00 0.00 3.58
1439 1454 4.345547 TGCACCGGGATAAGTATATGTGAA 59.654 41.667 6.32 0.00 0.00 3.18
1440 1455 5.163290 TGCACCGGGATAAGTATATGTGAAA 60.163 40.000 6.32 0.00 0.00 2.69
1441 1456 5.178809 GCACCGGGATAAGTATATGTGAAAC 59.821 44.000 6.32 0.00 37.35 2.78
1442 1457 5.699458 CACCGGGATAAGTATATGTGAAACC 59.301 44.000 6.32 0.00 34.36 3.27
1443 1458 5.605488 ACCGGGATAAGTATATGTGAAACCT 59.395 40.000 6.32 0.00 34.36 3.50
1444 1459 6.783977 ACCGGGATAAGTATATGTGAAACCTA 59.216 38.462 6.32 0.00 34.36 3.08
1445 1460 7.456902 ACCGGGATAAGTATATGTGAAACCTAT 59.543 37.037 6.32 0.00 34.36 2.57
1446 1461 7.980099 CCGGGATAAGTATATGTGAAACCTATC 59.020 40.741 0.00 0.00 34.36 2.08
1447 1462 7.980099 CGGGATAAGTATATGTGAAACCTATCC 59.020 40.741 0.00 0.00 34.36 2.59
1448 1463 9.047947 GGGATAAGTATATGTGAAACCTATCCT 57.952 37.037 8.92 0.00 34.36 3.24
1459 1474 8.208718 TGTGAAACCTATCCTTTCATAATTCG 57.791 34.615 0.00 0.00 39.28 3.34
1460 1475 7.827236 TGTGAAACCTATCCTTTCATAATTCGT 59.173 33.333 0.00 0.00 39.28 3.85
1461 1476 9.321562 GTGAAACCTATCCTTTCATAATTCGTA 57.678 33.333 0.00 0.00 39.28 3.43
1462 1477 9.893634 TGAAACCTATCCTTTCATAATTCGTAA 57.106 29.630 0.00 0.00 33.60 3.18
1482 1497 8.836268 TCGTAATTAATCCTTGTACTGTTTGT 57.164 30.769 0.00 0.00 0.00 2.83
1483 1498 9.275398 TCGTAATTAATCCTTGTACTGTTTGTT 57.725 29.630 0.00 0.00 0.00 2.83
1484 1499 9.325150 CGTAATTAATCCTTGTACTGTTTGTTG 57.675 33.333 0.00 0.00 0.00 3.33
1485 1500 9.620660 GTAATTAATCCTTGTACTGTTTGTTGG 57.379 33.333 0.00 0.00 0.00 3.77
1486 1501 8.472007 AATTAATCCTTGTACTGTTTGTTGGA 57.528 30.769 0.00 0.00 0.00 3.53
1487 1502 8.650143 ATTAATCCTTGTACTGTTTGTTGGAT 57.350 30.769 0.00 0.00 34.90 3.41
1488 1503 6.976934 AATCCTTGTACTGTTTGTTGGATT 57.023 33.333 0.00 0.00 37.98 3.01
1489 1504 6.575162 ATCCTTGTACTGTTTGTTGGATTC 57.425 37.500 0.00 0.00 29.82 2.52
1490 1505 5.690865 TCCTTGTACTGTTTGTTGGATTCT 58.309 37.500 0.00 0.00 0.00 2.40
1491 1506 6.833041 TCCTTGTACTGTTTGTTGGATTCTA 58.167 36.000 0.00 0.00 0.00 2.10
1492 1507 6.708949 TCCTTGTACTGTTTGTTGGATTCTAC 59.291 38.462 0.00 0.00 0.00 2.59
1493 1508 6.485313 CCTTGTACTGTTTGTTGGATTCTACA 59.515 38.462 0.00 0.00 0.00 2.74
1494 1509 7.174946 CCTTGTACTGTTTGTTGGATTCTACAT 59.825 37.037 0.00 0.00 0.00 2.29
1495 1510 8.458573 TTGTACTGTTTGTTGGATTCTACATT 57.541 30.769 0.00 0.00 0.00 2.71
1496 1511 9.562408 TTGTACTGTTTGTTGGATTCTACATTA 57.438 29.630 0.00 0.00 0.00 1.90
1497 1512 9.562408 TGTACTGTTTGTTGGATTCTACATTAA 57.438 29.630 0.00 0.00 0.00 1.40
1547 1562 1.329171 GCCAATTGCCCAGTGCCATA 61.329 55.000 0.00 0.00 40.16 2.74
1549 1564 0.461135 CAATTGCCCAGTGCCATACC 59.539 55.000 0.00 0.00 40.16 2.73
1550 1565 0.336048 AATTGCCCAGTGCCATACCT 59.664 50.000 0.00 0.00 40.16 3.08
1588 1604 3.365220 GTGAACGTGCAGTACTTCATCTC 59.635 47.826 0.00 0.00 32.79 2.75
1590 1606 1.204941 ACGTGCAGTACTTCATCTCCC 59.795 52.381 0.00 0.00 0.00 4.30
1593 1609 0.530870 GCAGTACTTCATCTCCCGCC 60.531 60.000 0.00 0.00 0.00 6.13
1650 1674 7.361286 GCCTCTGAAAAAGATTACCTTGTACTG 60.361 40.741 0.00 0.00 34.79 2.74
1651 1675 7.361286 CCTCTGAAAAAGATTACCTTGTACTGC 60.361 40.741 0.00 0.00 34.79 4.40
1755 1781 5.707764 AGGAGCTTTAGATTCAGTTCAAACC 59.292 40.000 0.00 0.00 0.00 3.27
1763 1805 4.279420 AGATTCAGTTCAAACCTGAAAGCC 59.721 41.667 6.91 1.25 43.18 4.35
1764 1806 1.946768 TCAGTTCAAACCTGAAAGCCG 59.053 47.619 0.00 0.00 43.18 5.52
1765 1807 1.676006 CAGTTCAAACCTGAAAGCCGT 59.324 47.619 0.00 0.00 43.18 5.68
1766 1808 1.947456 AGTTCAAACCTGAAAGCCGTC 59.053 47.619 0.00 0.00 43.18 4.79
1767 1809 1.673920 GTTCAAACCTGAAAGCCGTCA 59.326 47.619 0.00 0.00 43.18 4.35
1768 1810 1.593196 TCAAACCTGAAAGCCGTCAG 58.407 50.000 7.18 7.18 43.98 3.51
1769 1811 1.140052 TCAAACCTGAAAGCCGTCAGA 59.860 47.619 14.34 0.00 46.76 3.27
1770 1812 1.946768 CAAACCTGAAAGCCGTCAGAA 59.053 47.619 14.34 0.00 46.76 3.02
1771 1813 1.594331 AACCTGAAAGCCGTCAGAAC 58.406 50.000 14.34 0.00 46.76 3.01
1772 1814 0.250338 ACCTGAAAGCCGTCAGAACC 60.250 55.000 14.34 0.00 46.76 3.62
1773 1815 0.955919 CCTGAAAGCCGTCAGAACCC 60.956 60.000 14.34 0.00 46.76 4.11
1774 1816 0.035458 CTGAAAGCCGTCAGAACCCT 59.965 55.000 8.26 0.00 46.76 4.34
1775 1817 1.275291 CTGAAAGCCGTCAGAACCCTA 59.725 52.381 8.26 0.00 46.76 3.53
1776 1818 1.695242 TGAAAGCCGTCAGAACCCTAA 59.305 47.619 0.00 0.00 0.00 2.69
1777 1819 2.289444 TGAAAGCCGTCAGAACCCTAAG 60.289 50.000 0.00 0.00 0.00 2.18
1778 1820 0.036294 AAGCCGTCAGAACCCTAAGC 60.036 55.000 0.00 0.00 0.00 3.09
1809 1851 0.167470 CACAGCAGAATGAACAGGCG 59.833 55.000 0.00 0.00 39.69 5.52
1867 1909 1.359459 GCCGTCACCTAAAAGCTCCG 61.359 60.000 0.00 0.00 0.00 4.63
1914 1966 2.299297 ACACCCTGTAAAAGACGAGGAG 59.701 50.000 0.00 0.00 31.50 3.69
1985 2052 6.203530 GTGTCCACACACCATAATCATAGATG 59.796 42.308 4.92 0.00 46.49 2.90
1986 2053 6.099557 TGTCCACACACCATAATCATAGATGA 59.900 38.462 0.00 0.00 41.70 2.92
2005 2088 3.411446 TGATTGAGTTTTGCGGTGATCT 58.589 40.909 0.00 0.00 0.00 2.75
2006 2089 3.436704 TGATTGAGTTTTGCGGTGATCTC 59.563 43.478 0.00 0.00 0.00 2.75
2007 2090 1.808411 TGAGTTTTGCGGTGATCTCC 58.192 50.000 3.58 3.58 0.00 3.71
2008 2091 1.087501 GAGTTTTGCGGTGATCTCCC 58.912 55.000 8.22 0.25 0.00 4.30
2010 2093 1.004745 AGTTTTGCGGTGATCTCCCAT 59.995 47.619 8.22 0.00 0.00 4.00
2011 2094 1.401905 GTTTTGCGGTGATCTCCCATC 59.598 52.381 8.22 0.00 0.00 3.51
2012 2095 0.911769 TTTGCGGTGATCTCCCATCT 59.088 50.000 8.22 0.00 0.00 2.90
2013 2096 0.911769 TTGCGGTGATCTCCCATCTT 59.088 50.000 8.22 0.00 0.00 2.40
2014 2097 0.911769 TGCGGTGATCTCCCATCTTT 59.088 50.000 8.22 0.00 0.00 2.52
2015 2098 1.281867 TGCGGTGATCTCCCATCTTTT 59.718 47.619 8.22 0.00 0.00 2.27
2016 2099 1.943340 GCGGTGATCTCCCATCTTTTC 59.057 52.381 8.22 0.00 0.00 2.29
2017 2100 2.420687 GCGGTGATCTCCCATCTTTTCT 60.421 50.000 8.22 0.00 0.00 2.52
2018 2101 3.462021 CGGTGATCTCCCATCTTTTCTC 58.538 50.000 8.22 0.00 0.00 2.87
2019 2102 3.133721 CGGTGATCTCCCATCTTTTCTCT 59.866 47.826 8.22 0.00 0.00 3.10
2020 2103 4.450053 GGTGATCTCCCATCTTTTCTCTG 58.550 47.826 2.14 0.00 0.00 3.35
2021 2104 4.080638 GGTGATCTCCCATCTTTTCTCTGT 60.081 45.833 2.14 0.00 0.00 3.41
2022 2105 5.129485 GGTGATCTCCCATCTTTTCTCTGTA 59.871 44.000 2.14 0.00 0.00 2.74
2023 2106 6.352222 GGTGATCTCCCATCTTTTCTCTGTAA 60.352 42.308 2.14 0.00 0.00 2.41
2024 2107 7.106239 GTGATCTCCCATCTTTTCTCTGTAAA 58.894 38.462 0.00 0.00 0.00 2.01
2025 2108 7.065204 GTGATCTCCCATCTTTTCTCTGTAAAC 59.935 40.741 0.00 0.00 0.00 2.01
2026 2109 5.479306 TCTCCCATCTTTTCTCTGTAAACG 58.521 41.667 0.00 0.00 0.00 3.60
2027 2110 5.245301 TCTCCCATCTTTTCTCTGTAAACGA 59.755 40.000 0.00 0.00 0.00 3.85
2028 2111 5.235516 TCCCATCTTTTCTCTGTAAACGAC 58.764 41.667 0.00 0.00 0.00 4.34
2029 2112 4.091509 CCCATCTTTTCTCTGTAAACGACG 59.908 45.833 0.00 0.00 0.00 5.12
2030 2113 4.921515 CCATCTTTTCTCTGTAAACGACGA 59.078 41.667 0.00 0.00 0.00 4.20
2031 2114 5.061064 CCATCTTTTCTCTGTAAACGACGAG 59.939 44.000 0.00 0.00 32.99 4.18
2032 2115 3.979495 TCTTTTCTCTGTAAACGACGAGC 59.021 43.478 0.00 0.00 32.26 5.03
2050 2133 0.031994 GCGTTGGCTGATGGTGTTTT 59.968 50.000 0.00 0.00 35.83 2.43
2058 2141 3.181476 GGCTGATGGTGTTTTGTTTCTGT 60.181 43.478 0.00 0.00 0.00 3.41
2103 2186 6.750501 GGTTGTCTTAACCAAAGTTTCAGTTC 59.249 38.462 4.05 0.00 40.03 3.01
2114 2197 6.258287 CCAAAGTTTCAGTTCATCAAAATGCA 59.742 34.615 0.00 0.00 33.01 3.96
2170 2257 1.503818 ATGGCGTCGCGTGAAGTTTT 61.504 50.000 11.75 0.00 0.00 2.43
2171 2258 1.721133 GGCGTCGCGTGAAGTTTTG 60.721 57.895 11.75 0.00 0.00 2.44
2175 2262 1.255859 CGTCGCGTGAAGTTTTGTGTA 59.744 47.619 5.77 0.00 0.00 2.90
2178 2265 4.380290 GTCGCGTGAAGTTTTGTGTATAC 58.620 43.478 5.77 0.00 0.00 1.47
2236 2323 4.864334 GGCAGCATGTCGGAGGGG 62.864 72.222 0.00 0.00 39.31 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
387 388 0.896940 CAGAACCTTGGTGGCAGCAT 60.897 55.000 21.29 5.05 40.22 3.79
555 556 1.480498 GGTTCCCACCAATGTCCACTT 60.480 52.381 0.00 0.00 43.61 3.16
595 596 2.169769 ACTCCAAAGGTTGACGAACTCA 59.830 45.455 0.00 0.00 32.15 3.41
620 621 4.331968 GGGTTGAGGTGAATGTGTGATAA 58.668 43.478 0.00 0.00 0.00 1.75
678 679 1.267806 CCGCTGAATATTGGCCATCAC 59.732 52.381 6.09 1.63 0.00 3.06
712 713 3.666902 CGGTAAGGTCAAGAAATTGTGCG 60.667 47.826 0.00 0.00 0.00 5.34
726 727 2.628657 GGCATATCTGAGTCGGTAAGGT 59.371 50.000 0.00 0.00 0.00 3.50
732 733 3.742433 AAAGAGGCATATCTGAGTCGG 57.258 47.619 0.00 0.00 0.00 4.79
825 827 4.704833 GCTGAAGCCGGTCTGCCA 62.705 66.667 1.90 2.58 36.71 4.92
849 857 1.699730 AAGGTTACAGTTGGGCCAAC 58.300 50.000 36.51 36.51 43.83 3.77
850 858 2.035632 CAAAGGTTACAGTTGGGCCAA 58.964 47.619 16.66 16.66 0.00 4.52
851 859 1.698506 CAAAGGTTACAGTTGGGCCA 58.301 50.000 0.00 0.00 0.00 5.36
852 860 0.317160 GCAAAGGTTACAGTTGGGCC 59.683 55.000 0.00 0.00 0.00 5.80
893 905 5.221322 GGAAAAGAAGGTGAACTGCTGATTT 60.221 40.000 0.00 0.00 34.35 2.17
903 915 4.204012 ACGACATTGGAAAAGAAGGTGAA 58.796 39.130 0.00 0.00 0.00 3.18
936 948 6.930722 GTCATGTTTTGATCATTCCCAAACTT 59.069 34.615 16.78 10.39 36.54 2.66
960 973 3.973206 TGGACATCATGTAAACCGAGT 57.027 42.857 0.00 0.00 0.00 4.18
1109 1123 0.593773 GCGGAACACACGTGCATTTT 60.594 50.000 17.22 3.16 0.00 1.82
1277 1291 7.388500 GGCTTTCCATTTTCATTGAATGAGAAA 59.612 33.333 14.00 14.38 40.94 2.52
1282 1296 7.443259 AAAGGCTTTCCATTTTCATTGAATG 57.557 32.000 6.68 0.00 34.93 2.67
1298 1312 3.625649 TGAAACAAGGCAAAAGGCTTT 57.374 38.095 6.68 6.68 43.43 3.51
1329 1344 9.485206 AGTTTTTGATCTCCTCATTTGAAAATG 57.515 29.630 9.09 9.09 45.49 2.32
1330 1345 9.485206 CAGTTTTTGATCTCCTCATTTGAAAAT 57.515 29.630 0.00 0.00 32.72 1.82
1331 1346 7.439056 GCAGTTTTTGATCTCCTCATTTGAAAA 59.561 33.333 0.00 0.00 32.72 2.29
1332 1347 6.925165 GCAGTTTTTGATCTCCTCATTTGAAA 59.075 34.615 0.00 0.00 32.72 2.69
1333 1348 6.266103 AGCAGTTTTTGATCTCCTCATTTGAA 59.734 34.615 0.00 0.00 32.72 2.69
1334 1349 5.771666 AGCAGTTTTTGATCTCCTCATTTGA 59.228 36.000 0.00 0.00 32.72 2.69
1335 1350 6.022163 AGCAGTTTTTGATCTCCTCATTTG 57.978 37.500 0.00 0.00 32.72 2.32
1336 1351 7.765695 TTAGCAGTTTTTGATCTCCTCATTT 57.234 32.000 0.00 0.00 32.72 2.32
1337 1352 7.951347 ATTAGCAGTTTTTGATCTCCTCATT 57.049 32.000 0.00 0.00 32.72 2.57
1338 1353 7.201679 CGAATTAGCAGTTTTTGATCTCCTCAT 60.202 37.037 0.00 0.00 32.72 2.90
1339 1354 6.092670 CGAATTAGCAGTTTTTGATCTCCTCA 59.907 38.462 0.00 0.00 0.00 3.86
1340 1355 6.092807 ACGAATTAGCAGTTTTTGATCTCCTC 59.907 38.462 0.00 0.00 0.00 3.71
1341 1356 5.940470 ACGAATTAGCAGTTTTTGATCTCCT 59.060 36.000 0.00 0.00 0.00 3.69
1342 1357 6.183309 ACGAATTAGCAGTTTTTGATCTCC 57.817 37.500 0.00 0.00 0.00 3.71
1346 1361 9.503427 GCTTTATACGAATTAGCAGTTTTTGAT 57.497 29.630 0.00 0.00 0.00 2.57
1347 1362 7.966204 GGCTTTATACGAATTAGCAGTTTTTGA 59.034 33.333 0.00 0.00 33.60 2.69
1348 1363 7.753132 TGGCTTTATACGAATTAGCAGTTTTTG 59.247 33.333 0.00 0.00 33.60 2.44
1349 1364 7.822658 TGGCTTTATACGAATTAGCAGTTTTT 58.177 30.769 0.00 0.00 33.60 1.94
1350 1365 7.385778 TGGCTTTATACGAATTAGCAGTTTT 57.614 32.000 0.00 0.00 33.60 2.43
1351 1366 6.995511 TGGCTTTATACGAATTAGCAGTTT 57.004 33.333 0.00 0.00 33.60 2.66
1352 1367 7.282224 TCAATGGCTTTATACGAATTAGCAGTT 59.718 33.333 0.00 0.00 33.60 3.16
1353 1368 6.765989 TCAATGGCTTTATACGAATTAGCAGT 59.234 34.615 0.00 0.00 33.60 4.40
1354 1369 7.189693 TCAATGGCTTTATACGAATTAGCAG 57.810 36.000 0.00 0.00 33.60 4.24
1355 1370 6.293407 GCTCAATGGCTTTATACGAATTAGCA 60.293 38.462 0.00 0.00 33.60 3.49
1356 1371 6.080406 GCTCAATGGCTTTATACGAATTAGC 58.920 40.000 0.00 0.00 0.00 3.09
1357 1372 6.204688 TGGCTCAATGGCTTTATACGAATTAG 59.795 38.462 0.00 0.00 42.34 1.73
1358 1373 6.058833 TGGCTCAATGGCTTTATACGAATTA 58.941 36.000 0.00 0.00 42.34 1.40
1359 1374 4.887071 TGGCTCAATGGCTTTATACGAATT 59.113 37.500 0.00 0.00 42.34 2.17
1360 1375 4.460263 TGGCTCAATGGCTTTATACGAAT 58.540 39.130 0.00 0.00 42.34 3.34
1361 1376 3.876914 CTGGCTCAATGGCTTTATACGAA 59.123 43.478 0.00 0.00 42.34 3.85
1362 1377 3.466836 CTGGCTCAATGGCTTTATACGA 58.533 45.455 0.00 0.00 42.34 3.43
1363 1378 2.031682 GCTGGCTCAATGGCTTTATACG 60.032 50.000 0.00 0.00 42.34 3.06
1364 1379 2.294512 GGCTGGCTCAATGGCTTTATAC 59.705 50.000 0.00 0.00 42.34 1.47
1365 1380 2.586425 GGCTGGCTCAATGGCTTTATA 58.414 47.619 0.00 0.00 42.34 0.98
1366 1381 1.406903 GGCTGGCTCAATGGCTTTAT 58.593 50.000 0.00 0.00 42.34 1.40
1367 1382 0.684153 GGGCTGGCTCAATGGCTTTA 60.684 55.000 0.00 0.00 42.34 1.85
1368 1383 1.986210 GGGCTGGCTCAATGGCTTT 60.986 57.895 0.00 0.00 42.34 3.51
1369 1384 2.363406 GGGCTGGCTCAATGGCTT 60.363 61.111 0.00 0.00 42.34 4.35
1370 1385 3.228243 TTGGGCTGGCTCAATGGCT 62.228 57.895 3.54 0.00 42.34 4.75
1371 1386 2.681064 TTGGGCTGGCTCAATGGC 60.681 61.111 3.54 0.00 42.18 4.40
1372 1387 2.353610 GGTTGGGCTGGCTCAATGG 61.354 63.158 11.17 0.00 38.80 3.16
1373 1388 1.601419 CTGGTTGGGCTGGCTCAATG 61.601 60.000 11.17 2.02 38.80 2.82
1374 1389 1.304713 CTGGTTGGGCTGGCTCAAT 60.305 57.895 11.17 0.00 38.80 2.57
1375 1390 2.005606 TTCTGGTTGGGCTGGCTCAA 62.006 55.000 3.54 3.54 33.47 3.02
1376 1391 2.005606 TTTCTGGTTGGGCTGGCTCA 62.006 55.000 0.00 0.00 0.00 4.26
1377 1392 1.228552 TTTCTGGTTGGGCTGGCTC 60.229 57.895 0.00 0.00 0.00 4.70
1378 1393 1.531602 GTTTCTGGTTGGGCTGGCT 60.532 57.895 0.00 0.00 0.00 4.75
1379 1394 0.251165 TAGTTTCTGGTTGGGCTGGC 60.251 55.000 0.00 0.00 0.00 4.85
1380 1395 1.351017 TCTAGTTTCTGGTTGGGCTGG 59.649 52.381 0.00 0.00 0.00 4.85
1381 1396 2.704572 CTCTAGTTTCTGGTTGGGCTG 58.295 52.381 0.00 0.00 0.00 4.85
1382 1397 1.003696 GCTCTAGTTTCTGGTTGGGCT 59.996 52.381 0.00 0.00 0.00 5.19
1383 1398 1.454201 GCTCTAGTTTCTGGTTGGGC 58.546 55.000 0.00 0.00 0.00 5.36
1384 1399 1.676014 CGGCTCTAGTTTCTGGTTGGG 60.676 57.143 0.00 0.00 0.00 4.12
1385 1400 1.002087 ACGGCTCTAGTTTCTGGTTGG 59.998 52.381 0.00 0.00 0.00 3.77
1386 1401 2.069273 CACGGCTCTAGTTTCTGGTTG 58.931 52.381 0.00 0.00 0.00 3.77
1387 1402 1.692519 ACACGGCTCTAGTTTCTGGTT 59.307 47.619 0.00 0.00 0.00 3.67
1388 1403 1.000955 CACACGGCTCTAGTTTCTGGT 59.999 52.381 0.00 0.00 0.00 4.00
1389 1404 1.714794 CACACGGCTCTAGTTTCTGG 58.285 55.000 0.00 0.00 0.00 3.86
1390 1405 1.071605 GCACACGGCTCTAGTTTCTG 58.928 55.000 0.00 0.00 40.25 3.02
1391 1406 0.679505 TGCACACGGCTCTAGTTTCT 59.320 50.000 0.00 0.00 45.15 2.52
1392 1407 1.726853 ATGCACACGGCTCTAGTTTC 58.273 50.000 0.00 0.00 45.15 2.78
1393 1408 2.185004 AATGCACACGGCTCTAGTTT 57.815 45.000 0.00 0.00 45.15 2.66
1394 1409 3.543680 ATAATGCACACGGCTCTAGTT 57.456 42.857 0.00 0.00 45.15 2.24
1395 1410 4.560128 CATATAATGCACACGGCTCTAGT 58.440 43.478 0.00 0.00 45.15 2.57
1409 1424 9.208022 CATATACTTATCCCGGTGCATATAATG 57.792 37.037 0.00 0.00 0.00 1.90
1410 1425 8.934697 ACATATACTTATCCCGGTGCATATAAT 58.065 33.333 0.00 0.00 0.00 1.28
1411 1426 8.201464 CACATATACTTATCCCGGTGCATATAA 58.799 37.037 0.00 0.00 0.00 0.98
1412 1427 7.562088 TCACATATACTTATCCCGGTGCATATA 59.438 37.037 0.00 0.00 0.00 0.86
1413 1428 6.382859 TCACATATACTTATCCCGGTGCATAT 59.617 38.462 0.00 0.00 0.00 1.78
1414 1429 5.717654 TCACATATACTTATCCCGGTGCATA 59.282 40.000 0.00 0.00 0.00 3.14
1415 1430 4.530553 TCACATATACTTATCCCGGTGCAT 59.469 41.667 0.00 0.00 0.00 3.96
1416 1431 3.898741 TCACATATACTTATCCCGGTGCA 59.101 43.478 0.00 0.00 0.00 4.57
1417 1432 4.530710 TCACATATACTTATCCCGGTGC 57.469 45.455 0.00 0.00 0.00 5.01
1418 1433 5.699458 GGTTTCACATATACTTATCCCGGTG 59.301 44.000 0.00 0.00 0.00 4.94
1419 1434 5.605488 AGGTTTCACATATACTTATCCCGGT 59.395 40.000 0.00 0.00 0.00 5.28
1420 1435 6.110411 AGGTTTCACATATACTTATCCCGG 57.890 41.667 0.00 0.00 0.00 5.73
1421 1436 7.980099 GGATAGGTTTCACATATACTTATCCCG 59.020 40.741 10.56 0.00 41.52 5.14
1422 1437 9.047947 AGGATAGGTTTCACATATACTTATCCC 57.952 37.037 15.22 4.09 45.20 3.85
1433 1448 8.840321 CGAATTATGAAAGGATAGGTTTCACAT 58.160 33.333 0.56 0.00 44.55 3.21
1434 1449 7.827236 ACGAATTATGAAAGGATAGGTTTCACA 59.173 33.333 0.56 0.00 44.55 3.58
1435 1450 8.209917 ACGAATTATGAAAGGATAGGTTTCAC 57.790 34.615 0.56 0.00 44.55 3.18
1436 1451 9.893634 TTACGAATTATGAAAGGATAGGTTTCA 57.106 29.630 1.04 1.04 45.51 2.69
1456 1471 9.275398 ACAAACAGTACAAGGATTAATTACGAA 57.725 29.630 0.00 0.00 0.00 3.85
1457 1472 8.836268 ACAAACAGTACAAGGATTAATTACGA 57.164 30.769 0.00 0.00 0.00 3.43
1458 1473 9.325150 CAACAAACAGTACAAGGATTAATTACG 57.675 33.333 0.00 0.00 0.00 3.18
1459 1474 9.620660 CCAACAAACAGTACAAGGATTAATTAC 57.379 33.333 0.00 0.00 0.00 1.89
1460 1475 9.575868 TCCAACAAACAGTACAAGGATTAATTA 57.424 29.630 0.00 0.00 0.00 1.40
1461 1476 8.472007 TCCAACAAACAGTACAAGGATTAATT 57.528 30.769 0.00 0.00 0.00 1.40
1462 1477 8.650143 ATCCAACAAACAGTACAAGGATTAAT 57.350 30.769 0.00 0.00 30.87 1.40
1463 1478 8.472007 AATCCAACAAACAGTACAAGGATTAA 57.528 30.769 0.00 0.00 41.42 1.40
1464 1479 7.942341 AGAATCCAACAAACAGTACAAGGATTA 59.058 33.333 0.00 0.00 42.78 1.75
1465 1480 6.777580 AGAATCCAACAAACAGTACAAGGATT 59.222 34.615 0.00 0.00 44.71 3.01
1466 1481 6.306987 AGAATCCAACAAACAGTACAAGGAT 58.693 36.000 0.00 0.00 36.25 3.24
1467 1482 5.690865 AGAATCCAACAAACAGTACAAGGA 58.309 37.500 0.00 0.00 0.00 3.36
1468 1483 6.485313 TGTAGAATCCAACAAACAGTACAAGG 59.515 38.462 0.00 0.00 0.00 3.61
1469 1484 7.490962 TGTAGAATCCAACAAACAGTACAAG 57.509 36.000 0.00 0.00 0.00 3.16
1470 1485 8.458573 AATGTAGAATCCAACAAACAGTACAA 57.541 30.769 0.00 0.00 0.00 2.41
1471 1486 9.562408 TTAATGTAGAATCCAACAAACAGTACA 57.438 29.630 0.00 0.00 0.00 2.90
1508 1523 5.738909 TGGCAAACATCTCCAAAAGAAAAA 58.261 33.333 0.00 0.00 37.61 1.94
1509 1524 5.350504 TGGCAAACATCTCCAAAAGAAAA 57.649 34.783 0.00 0.00 37.61 2.29
1510 1525 5.350504 TTGGCAAACATCTCCAAAAGAAA 57.649 34.783 0.00 0.00 37.61 2.52
1511 1526 5.549742 ATTGGCAAACATCTCCAAAAGAA 57.450 34.783 3.01 0.00 42.43 2.52
1512 1527 5.299148 CAATTGGCAAACATCTCCAAAAGA 58.701 37.500 3.01 0.00 42.43 2.52
1513 1528 4.083696 GCAATTGGCAAACATCTCCAAAAG 60.084 41.667 3.01 0.00 42.43 2.27
1547 1562 2.650116 ATGCCTTCAGTCGCGAGGT 61.650 57.895 10.24 0.00 33.03 3.85
1549 1564 1.446792 ACATGCCTTCAGTCGCGAG 60.447 57.895 10.24 0.00 0.00 5.03
1550 1565 1.737735 CACATGCCTTCAGTCGCGA 60.738 57.895 3.71 3.71 0.00 5.87
1588 1604 0.894141 TTGGATTTCACATTGGCGGG 59.106 50.000 0.00 0.00 0.00 6.13
1590 1606 1.271934 TGGTTGGATTTCACATTGGCG 59.728 47.619 0.00 0.00 0.00 5.69
1593 1609 3.366273 CGGTCTGGTTGGATTTCACATTG 60.366 47.826 0.00 0.00 0.00 2.82
1650 1674 1.303309 CGGAGGATCAATTCAGGTGC 58.697 55.000 0.00 0.00 36.25 5.01
1651 1675 2.093500 TGACGGAGGATCAATTCAGGTG 60.093 50.000 0.00 0.00 36.25 4.00
1755 1781 0.035458 AGGGTTCTGACGGCTTTCAG 59.965 55.000 8.37 8.37 43.93 3.02
1763 1805 1.997669 GTCAGCTTAGGGTTCTGACG 58.002 55.000 5.95 0.00 44.60 4.35
1765 1807 2.180276 GGAGTCAGCTTAGGGTTCTGA 58.820 52.381 0.00 0.00 34.78 3.27
1766 1808 1.208293 GGGAGTCAGCTTAGGGTTCTG 59.792 57.143 0.00 0.00 0.00 3.02
1767 1809 1.203313 TGGGAGTCAGCTTAGGGTTCT 60.203 52.381 0.00 0.00 0.00 3.01
1768 1810 1.276622 TGGGAGTCAGCTTAGGGTTC 58.723 55.000 0.00 0.00 0.00 3.62
1769 1811 1.630878 CTTGGGAGTCAGCTTAGGGTT 59.369 52.381 0.00 0.00 0.00 4.11
1770 1812 1.280457 CTTGGGAGTCAGCTTAGGGT 58.720 55.000 0.00 0.00 0.00 4.34
1771 1813 0.107459 GCTTGGGAGTCAGCTTAGGG 60.107 60.000 0.00 0.00 0.00 3.53
1772 1814 0.615331 TGCTTGGGAGTCAGCTTAGG 59.385 55.000 2.96 0.00 0.00 2.69
1773 1815 1.002430 TGTGCTTGGGAGTCAGCTTAG 59.998 52.381 2.96 0.00 0.00 2.18
1774 1816 1.002430 CTGTGCTTGGGAGTCAGCTTA 59.998 52.381 2.96 0.00 0.00 3.09
1775 1817 0.250640 CTGTGCTTGGGAGTCAGCTT 60.251 55.000 2.96 0.00 0.00 3.74
1776 1818 1.374190 CTGTGCTTGGGAGTCAGCT 59.626 57.895 2.96 0.00 0.00 4.24
1777 1819 2.331132 GCTGTGCTTGGGAGTCAGC 61.331 63.158 0.00 0.00 41.56 4.26
1778 1820 0.954449 CTGCTGTGCTTGGGAGTCAG 60.954 60.000 0.00 0.00 33.46 3.51
1809 1851 4.622313 TCATTTCTTCAATGATTTGTGCGC 59.378 37.500 0.00 0.00 45.45 6.09
1867 1909 1.566018 CGAACGAACCCAACTCAGCC 61.566 60.000 0.00 0.00 0.00 4.85
1914 1966 1.065551 GGCCACGCTTTATTCCATGTC 59.934 52.381 0.00 0.00 0.00 3.06
1985 2052 3.181506 GGAGATCACCGCAAAACTCAATC 60.182 47.826 0.00 0.00 0.00 2.67
1986 2053 2.749621 GGAGATCACCGCAAAACTCAAT 59.250 45.455 0.00 0.00 0.00 2.57
2005 2088 5.235516 GTCGTTTACAGAGAAAAGATGGGA 58.764 41.667 0.00 0.00 31.09 4.37
2006 2089 4.091509 CGTCGTTTACAGAGAAAAGATGGG 59.908 45.833 0.00 0.00 33.07 4.00
2007 2090 4.921515 TCGTCGTTTACAGAGAAAAGATGG 59.078 41.667 0.00 0.00 35.66 3.51
2008 2091 5.443431 GCTCGTCGTTTACAGAGAAAAGATG 60.443 44.000 0.00 0.00 36.04 2.90
2010 2093 3.979495 GCTCGTCGTTTACAGAGAAAAGA 59.021 43.478 0.00 0.00 33.37 2.52
2011 2094 3.181552 CGCTCGTCGTTTACAGAGAAAAG 60.182 47.826 0.00 0.00 33.37 2.27
2012 2095 2.722629 CGCTCGTCGTTTACAGAGAAAA 59.277 45.455 0.00 0.00 33.37 2.29
2013 2096 2.313234 CGCTCGTCGTTTACAGAGAAA 58.687 47.619 0.00 0.00 33.37 2.52
2014 2097 1.959747 CGCTCGTCGTTTACAGAGAA 58.040 50.000 0.00 0.00 33.37 2.87
2015 2098 3.670500 CGCTCGTCGTTTACAGAGA 57.330 52.632 0.00 0.00 33.37 3.10
2025 2108 2.507102 ATCAGCCAACGCTCGTCG 60.507 61.111 0.00 0.00 43.95 5.12
2026 2109 2.456119 CCATCAGCCAACGCTCGTC 61.456 63.158 0.00 0.00 43.95 4.20
2027 2110 2.434884 CCATCAGCCAACGCTCGT 60.435 61.111 0.00 0.00 43.95 4.18
2028 2111 2.434884 ACCATCAGCCAACGCTCG 60.435 61.111 0.00 0.00 43.95 5.03
2029 2112 1.237285 AACACCATCAGCCAACGCTC 61.237 55.000 0.00 0.00 43.95 5.03
2031 2114 0.031994 AAAACACCATCAGCCAACGC 59.968 50.000 0.00 0.00 0.00 4.84
2032 2115 1.066908 ACAAAACACCATCAGCCAACG 59.933 47.619 0.00 0.00 0.00 4.10
2050 2133 3.621268 CGTGGAAGAAACTGACAGAAACA 59.379 43.478 10.08 0.00 0.00 2.83
2058 2141 0.834612 ACACCCGTGGAAGAAACTGA 59.165 50.000 0.00 0.00 34.19 3.41
2082 2165 7.703328 TGATGAACTGAAACTTTGGTTAAGAC 58.297 34.615 0.00 0.00 37.30 3.01
2194 2281 7.397476 CCAAATGGTCAGCTAGGTAGATAGATA 59.603 40.741 0.00 0.00 0.00 1.98
2209 2296 0.892755 ACATGCTGCCAAATGGTCAG 59.107 50.000 15.28 15.28 40.16 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.