AutoCloner

Multiple sequence alignment - TraesCS7B01G151800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G151800	chr7B	100.000	2819	0	0	1	2819	201994002	201991184	0.000000e+00	5206
1	TraesCS7B01G151800	chr7B	93.869	946	58	0	1	946	46851843	46850898	0.000000e+00	1426
2	TraesCS7B01G151800	chr5D	95.137	946	45	1	1	946	23222283	23221339	0.000000e+00	1491
3	TraesCS7B01G151800	chr5D	94.186	946	55	0	1	946	462559255	462560200	0.000000e+00	1443
4	TraesCS7B01G151800	chr5D	93.975	946	56	1	1	946	343251032	343250088	0.000000e+00	1430
5	TraesCS7B01G151800	chr5D	91.589	749	57	6	2071	2817	58652326	58651582	0.000000e+00	1029
6	TraesCS7B01G151800	chr5D	91.379	754	58	4	2071	2819	23221353	23220602	0.000000e+00	1026
7	TraesCS7B01G151800	chr6D	94.926	946	48	0	1	946	420473789	420474734	0.000000e+00	1482
8	TraesCS7B01G151800	chr3D	94.926	946	47	1	1	946	33216430	33217374	0.000000e+00	1480
9	TraesCS7B01G151800	chr3D	94.080	946	54	1	1	946	335690204	335691147	0.000000e+00	1435
10	TraesCS7B01G151800	chr4B	94.286	945	54	0	1	945	426376056	426375112	0.000000e+00	1447
11	TraesCS7B01G151800	chr2D	93.869	946	57	1	1	946	62535804	62534860	0.000000e+00	1424
12	TraesCS7B01G151800	chr2D	95.073	893	41	1	1174	2063	366297609	366298501	0.000000e+00	1402
13	TraesCS7B01G151800	chr2D	92.032	753	48	9	2071	2814	183433814	183434563	0.000000e+00	1048
14	TraesCS7B01G151800	chr2D	91.523	755	56	5	2071	2819	102004596	102003844	0.000000e+00	1033
15	TraesCS7B01G151800	chr2D	92.609	230	17	0	947	1176	366296333	366296562	5.820000e-87	331
16	TraesCS7B01G151800	chr2B	95.409	893	35	2	1174	2063	435062348	435063237	0.000000e+00	1417
17	TraesCS7B01G151800	chr2B	93.478	230	15	0	947	1176	435061079	435061308	2.690000e-90	342
18	TraesCS7B01G151800	chr2A	95.073	893	41	1	1174	2063	495221880	495222772	0.000000e+00	1402
19	TraesCS7B01G151800	chr2A	92.609	230	17	0	947	1176	495220600	495220829	5.820000e-87	331
20	TraesCS7B01G151800	chr4D	91.888	752	54	7	2071	2819	353884916	353885663	0.000000e+00	1044
21	TraesCS7B01G151800	chr1D	91.888	752	53	8	2071	2817	303016789	303017537	0.000000e+00	1044
22	TraesCS7B01G151800	chr1B	91.733	750	56	6	2071	2817	296958131	296957385	0.000000e+00	1037
23	TraesCS7B01G151800	chr6B	91.733	750	54	5	2073	2817	334337819	334337073	0.000000e+00	1035
24	TraesCS7B01G151800	chr7D	91.700	747	55	4	2073	2813	598922756	598922011	0.000000e+00	1029

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G151800	chr7B	201991184	201994002	2818	True	5206.0	5206	100.0000	1	2819	1	chr7B.!!$R2	2818
1	TraesCS7B01G151800	chr7B	46850898	46851843	945	True	1426.0	1426	93.8690	1	946	1	chr7B.!!$R1	945
2	TraesCS7B01G151800	chr5D	462559255	462560200	945	False	1443.0	1443	94.1860	1	946	1	chr5D.!!$F1	945
3	TraesCS7B01G151800	chr5D	343250088	343251032	944	True	1430.0	1430	93.9750	1	946	1	chr5D.!!$R2	945
4	TraesCS7B01G151800	chr5D	23220602	23222283	1681	True	1258.5	1491	93.2580	1	2819	2	chr5D.!!$R3	2818
5	TraesCS7B01G151800	chr5D	58651582	58652326	744	True	1029.0	1029	91.5890	2071	2817	1	chr5D.!!$R1	746
6	TraesCS7B01G151800	chr6D	420473789	420474734	945	False	1482.0	1482	94.9260	1	946	1	chr6D.!!$F1	945
7	TraesCS7B01G151800	chr3D	33216430	33217374	944	False	1480.0	1480	94.9260	1	946	1	chr3D.!!$F1	945
8	TraesCS7B01G151800	chr3D	335690204	335691147	943	False	1435.0	1435	94.0800	1	946	1	chr3D.!!$F2	945
9	TraesCS7B01G151800	chr4B	426375112	426376056	944	True	1447.0	1447	94.2860	1	945	1	chr4B.!!$R1	944
10	TraesCS7B01G151800	chr2D	62534860	62535804	944	True	1424.0	1424	93.8690	1	946	1	chr2D.!!$R1	945
11	TraesCS7B01G151800	chr2D	183433814	183434563	749	False	1048.0	1048	92.0320	2071	2814	1	chr2D.!!$F1	743
12	TraesCS7B01G151800	chr2D	102003844	102004596	752	True	1033.0	1033	91.5230	2071	2819	1	chr2D.!!$R2	748
13	TraesCS7B01G151800	chr2D	366296333	366298501	2168	False	866.5	1402	93.8410	947	2063	2	chr2D.!!$F2	1116
14	TraesCS7B01G151800	chr2B	435061079	435063237	2158	False	879.5	1417	94.4435	947	2063	2	chr2B.!!$F1	1116
15	TraesCS7B01G151800	chr2A	495220600	495222772	2172	False	866.5	1402	93.8410	947	2063	2	chr2A.!!$F1	1116
16	TraesCS7B01G151800	chr4D	353884916	353885663	747	False	1044.0	1044	91.8880	2071	2819	1	chr4D.!!$F1	748
17	TraesCS7B01G151800	chr1D	303016789	303017537	748	False	1044.0	1044	91.8880	2071	2817	1	chr1D.!!$F1	746
18	TraesCS7B01G151800	chr1B	296957385	296958131	746	True	1037.0	1037	91.7330	2071	2817	1	chr1B.!!$R1	746
19	TraesCS7B01G151800	chr6B	334337073	334337819	746	True	1035.0	1035	91.7330	2073	2817	1	chr6B.!!$R1	744
20	TraesCS7B01G151800	chr7D	598922011	598922756	745	True	1029.0	1029	91.7000	2073	2813	1	chr7D.!!$R1	740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
437	438	1.067060	GCCATCCTTTTTATCCGCCAC	59.933	52.381	0.00	0.0	0.0	5.01	F
1112	1113	0.178533	AGACCTAGGAGAGACGACGG	59.821	60.000	17.98	0.0	0.0	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1374	2431	0.321122	CAAGGAGACCCAGCAGTGAC	60.321	60.0	0.00	0.0	33.88	3.67	R
2744	3817	0.969149	TCTTCGTGCTGAGACACCAT	59.031	50.0	2.34	0.0	37.25	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
207	208	7.540474	TCAACACTAATCTCAAAGGTAGAGT	57.460	36.000	0.00	0.00	34.73	3.24
215	216	4.215908	TCTCAAAGGTAGAGTGAGTGTGT	58.784	43.478	0.00	0.00	39.82	3.72
262	263	1.192312	CACTTCCAACACACATCGTCG	59.808	52.381	0.00	0.00	0.00	5.12
303	304	3.071457	TCTGTTCATTCTGCAACTCCTGA	59.929	43.478	0.00	0.00	0.00	3.86
374	375	6.496218	AGGCTACTACAAACACTAGTAAGGTT	59.504	38.462	0.00	0.00	0.00	3.50
426	427	4.443315	CCTTTGTTCACTTTGCCATCCTTT	60.443	41.667	0.00	0.00	0.00	3.11
437	438	1.067060	GCCATCCTTTTTATCCGCCAC	59.933	52.381	0.00	0.00	0.00	5.01
438	439	2.374184	CCATCCTTTTTATCCGCCACA	58.626	47.619	0.00	0.00	0.00	4.17
501	502	3.898123	AGTAGAAGCACTCAGTTTCAGGA	59.102	43.478	0.00	0.00	39.64	3.86
542	543	2.642311	TCTTCATGGGAGTGGCAACTTA	59.358	45.455	0.00	0.00	36.52	2.24
567	568	3.157087	GCCATTCTTCTTGAAGTTCCCA	58.843	45.455	9.80	0.00	38.18	4.37
818	819	8.201554	TGATTCAAGCAATTGTAGTACTCATC	57.798	34.615	7.40	0.72	0.00	2.92
840	841	6.484364	TCCATTCTGAATACATGCTCACTA	57.516	37.500	1.98	0.00	0.00	2.74
841	842	6.888105	TCCATTCTGAATACATGCTCACTAA	58.112	36.000	1.98	0.00	0.00	2.24
891	892	4.230657	CAAAGTACTTGTCAGAGGTCTCG	58.769	47.826	9.34	0.00	34.09	4.04
968	969	4.283467	CGATTAGACTACCATCCCCAATCA	59.717	45.833	0.00	0.00	0.00	2.57
994	995	1.596934	GAGGACAAGGATGACGCCA	59.403	57.895	0.00	0.00	0.00	5.69
1007	1008	1.005037	ACGCCAACGAGATGCTGAA	60.005	52.632	0.00	0.00	43.93	3.02
1112	1113	0.178533	AGACCTAGGAGAGACGACGG	59.821	60.000	17.98	0.00	0.00	4.79
1116	1117	0.881159	CTAGGAGAGACGACGGCGAT	60.881	60.000	22.49	4.82	41.64	4.58
1198	2255	4.982295	GCTTTTATTCGGCTGAAACACTTT	59.018	37.500	12.96	0.00	37.71	2.66
1206	2263	2.098443	GGCTGAAACACTTTTTCCACGA	59.902	45.455	0.00	0.00	0.00	4.35
1219	2276	3.410631	TTCCACGAAACCAAGATGCTA	57.589	42.857	0.00	0.00	0.00	3.49
1272	2329	3.891366	CACTGAAGAACCCCAACTCAAAT	59.109	43.478	0.00	0.00	0.00	2.32
1286	2343	6.017109	CCCAACTCAAATATCCTTTATGACCG	60.017	42.308	0.00	0.00	0.00	4.79
1310	2367	6.463049	CGGTACAACCATGAAAGATATCCTCT	60.463	42.308	0.00	0.00	38.47	3.69
1328	2385	3.824815	TGGAGATCCCAGCAAGCA	58.175	55.556	0.00	0.00	40.82	3.91
1374	2431	2.029380	TGGTGGGAGATTCGTATATGCG	60.029	50.000	6.90	6.90	0.00	4.73
1384	2441	1.131771	CGTATATGCGTCACTGCTGG	58.868	55.000	4.91	0.00	35.36	4.85
1408	2465	4.876107	GTCTCCTTGTCTTGAAGTTTGTCA	59.124	41.667	0.00	0.00	0.00	3.58
1409	2466	5.007136	GTCTCCTTGTCTTGAAGTTTGTCAG	59.993	44.000	0.00	0.00	0.00	3.51
1410	2467	5.097742	TCCTTGTCTTGAAGTTTGTCAGA	57.902	39.130	0.00	0.00	0.00	3.27
1502	2562	0.541392	ACAGTGACTGTCAAGTGGCA	59.459	50.000	13.33	0.00	41.21	4.92
1532	2592	1.227089	CCTTCATCAGGCGACGGAG	60.227	63.158	0.00	0.00	38.16	4.63
1559	2619	1.180029	GACATCAAGCTGGCCAACAT	58.820	50.000	7.01	0.00	0.00	2.71
1699	2759	0.550914	AGACTTTGGTGGCTGGTTCA	59.449	50.000	0.00	0.00	0.00	3.18
1700	2760	1.064017	AGACTTTGGTGGCTGGTTCAA	60.064	47.619	0.00	0.00	0.00	2.69
1703	2763	0.032615	TTTGGTGGCTGGTTCAACCT	60.033	50.000	8.40	0.00	39.58	3.50
1742	2802	2.475155	TGACATCTCTGGCAGAATCCT	58.525	47.619	19.29	1.31	34.67	3.24
1904	2964	8.200792	TGTTATTTTGTTTTCAATGTGGCTAGT	58.799	29.630	0.00	0.00	39.70	2.57
1916	2976	9.606631	TTCAATGTGGCTAGTAATTTTTGTTTT	57.393	25.926	0.00	0.00	0.00	2.43
2033	3093	9.125026	AGTTGTTTTGTACTGATTTTCTGAGAT	57.875	29.630	0.00	0.00	0.00	2.75
2063	3123	6.155565	TCGGAAGGATATTGTAAACCTCTTCA	59.844	38.462	0.00	0.00	31.89	3.02
2064	3124	6.821665	CGGAAGGATATTGTAAACCTCTTCAA	59.178	38.462	0.00	0.00	31.89	2.69
2065	3125	7.335924	CGGAAGGATATTGTAAACCTCTTCAAA	59.664	37.037	0.00	0.00	31.89	2.69
2066	3126	9.020731	GGAAGGATATTGTAAACCTCTTCAAAA	57.979	33.333	0.00	0.00	31.89	2.44
2109	3169	1.317613	TGCTCTGTGGCGTTCAAAAT	58.682	45.000	0.00	0.00	34.52	1.82
2198	3259	5.106555	CCGAGCTTGTCAAACATTCATAACT	60.107	40.000	0.00	0.00	0.00	2.24
2223	3286	5.524393	TGCATCAGCTCCTGCAATAGGTT	62.524	47.826	15.52	0.00	44.87	3.50
2342	3409	7.385205	TCATCTTTCAACTTTTCTCTAGGAACG	59.615	37.037	0.00	0.00	33.13	3.95
2521	3594	6.693466	TCACGTGATCCAAATAGACTAAACA	58.307	36.000	15.76	0.00	0.00	2.83
2536	3609	6.586344	AGACTAAACAATGTCCGATCATCAT	58.414	36.000	0.00	0.00	34.02	2.45
2557	3630	5.896106	TCATGTGAGATGGAGTAGTCTTCAT	59.104	40.000	0.00	0.00	42.13	2.57
2576	3649	8.986847	GTCTTCATTGGTGAACATCTCTATATG	58.013	37.037	0.00	0.00	39.36	1.78
2608	3681	7.141100	TCTACTATATGATTCGCATTCGACA	57.859	36.000	0.00	0.00	45.43	4.35
2628	3701	1.124780	TTTCGGTCTCCAGTGTTCCA	58.875	50.000	0.00	0.00	0.00	3.53
2659	3732	3.319122	TCTGTACATGCTACGCTCATCAT	59.681	43.478	0.00	0.00	0.00	2.45
2669	3742	2.365582	ACGCTCATCATGTTTAACCCC	58.634	47.619	0.00	0.00	0.00	4.95
2670	3743	2.290641	ACGCTCATCATGTTTAACCCCA	60.291	45.455	0.00	0.00	0.00	4.96
2692	3765	2.094752	AGTATTCCGCATGTGCAAAACC	60.095	45.455	0.00	0.00	42.21	3.27
2696	3769	2.074353	CGCATGTGCAAAACCGTCG	61.074	57.895	5.77	0.00	42.21	5.12
2710	3783	1.950130	CGTCGTGCACCCGTTGTAA	60.950	57.895	12.15	0.00	0.00	2.41
2744	3817	2.365293	CCTATCACACCCGATCATCACA	59.635	50.000	0.00	0.00	0.00	3.58
2770	3843	3.123804	GTCTCAGCACGAAGAACTTTCA	58.876	45.455	0.00	0.00	0.00	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
195	196	3.958147	TCACACACTCACTCTACCTTTGA	59.042	43.478	0.00	0.00	0.00	2.69
207	208	1.618343	ACGATCACCATCACACACTCA	59.382	47.619	0.00	0.00	0.00	3.41
215	216	4.441792	CAAGGTTGATACGATCACCATCA	58.558	43.478	0.00	0.00	39.39	3.07
262	263	3.131400	CAGAGACTAGTTAAGGGTGAGGC	59.869	52.174	0.00	0.00	0.00	4.70
346	347	7.555554	CCTTACTAGTGTTTGTAGTAGCCTCTA	59.444	40.741	5.39	0.00	35.04	2.43
349	350	6.015282	ACCTTACTAGTGTTTGTAGTAGCCT	58.985	40.000	5.39	0.00	35.04	4.58
426	427	3.226777	CCCCAAATATGTGGCGGATAAA	58.773	45.455	6.38	0.00	37.34	1.40
542	543	4.279420	GGAACTTCAAGAAGAATGGCAAGT	59.721	41.667	16.16	0.00	40.79	3.16
567	568	4.752063	AGTAAAAGGGCAAGGGAAAGAAT	58.248	39.130	0.00	0.00	0.00	2.40
692	693	6.092670	CGTGATGAACTATAATATGCAAGGGG	59.907	42.308	0.00	0.00	0.00	4.79
818	819	7.741027	ATTAGTGAGCATGTATTCAGAATGG	57.259	36.000	5.85	0.00	36.16	3.16
840	841	6.126536	ACAAGATGGAGGAGAATAGCTCAATT	60.127	38.462	0.00	0.00	45.81	2.32
841	842	5.369110	ACAAGATGGAGGAGAATAGCTCAAT	59.631	40.000	0.00	0.00	45.81	2.57
891	892	0.753262	ATGCCCATGTCGAGAGGTAC	59.247	55.000	0.00	0.00	0.00	3.34
968	969	0.252742	ATCCTTGTCCTCCTCCGGTT	60.253	55.000	0.00	0.00	0.00	4.44
982	983	0.537188	ATCTCGTTGGCGTCATCCTT	59.463	50.000	0.00	0.00	39.49	3.36
987	988	1.737735	CAGCATCTCGTTGGCGTCA	60.738	57.895	0.00	0.00	39.49	4.35
994	995	1.160137	GCAACCTTCAGCATCTCGTT	58.840	50.000	0.00	0.00	0.00	3.85
1093	1094	0.178533	CCGTCGTCTCTCCTAGGTCT	59.821	60.000	9.08	0.00	0.00	3.85
1095	1096	1.451747	GCCGTCGTCTCTCCTAGGT	60.452	63.158	9.08	0.00	0.00	3.08
1099	1100	2.124653	ATCGCCGTCGTCTCTCCT	60.125	61.111	0.00	0.00	36.96	3.69
1116	1117	2.642254	CCGCTGGTAGGTCGAACCA	61.642	63.158	7.23	7.23	44.75	3.67
1123	1124	4.078516	GAACCGCCGCTGGTAGGT	62.079	66.667	7.22	9.61	42.89	3.08
1181	2238	3.383185	TGGAAAAAGTGTTTCAGCCGAAT	59.617	39.130	8.06	0.00	0.00	3.34
1198	2255	2.582052	AGCATCTTGGTTTCGTGGAAA	58.418	42.857	0.00	0.00	0.00	3.13
1206	2263	3.525800	ACCAACCTAGCATCTTGGTTT	57.474	42.857	9.39	0.00	44.51	3.27
1219	2276	0.178990	GCTGGGAGTTCAACCAACCT	60.179	55.000	0.00	0.00	36.09	3.50
1226	2283	0.550914	AACAGTGGCTGGGAGTTCAA	59.449	50.000	0.00	0.00	35.51	2.69
1272	2329	4.715792	TGGTTGTACCGGTCATAAAGGATA	59.284	41.667	12.40	0.00	42.58	2.59
1286	2343	6.831976	AGAGGATATCTTTCATGGTTGTACC	58.168	40.000	2.05	0.00	34.67	3.34
1310	2367	0.627451	ATGCTTGCTGGGATCTCCAA	59.373	50.000	4.71	0.00	46.51	3.53
1328	2385	3.256631	CAGAACAAAGTAGGCAAAGGCAT	59.743	43.478	0.00	0.00	43.71	4.40
1374	2431	0.321122	CAAGGAGACCCAGCAGTGAC	60.321	60.000	0.00	0.00	33.88	3.67
1384	2441	4.200092	ACAAACTTCAAGACAAGGAGACC	58.800	43.478	0.00	0.00	0.00	3.85
1408	2465	4.940046	CACATCCTTACTTGCTGACATTCT	59.060	41.667	0.00	0.00	0.00	2.40
1409	2466	4.437930	GCACATCCTTACTTGCTGACATTC	60.438	45.833	0.00	0.00	32.00	2.67
1410	2467	3.441572	GCACATCCTTACTTGCTGACATT	59.558	43.478	0.00	0.00	32.00	2.71
1502	2562	1.006281	TGATGAAGGCTGGCTTTCCAT	59.994	47.619	18.04	16.37	42.51	3.41
1532	2592	2.200067	CCAGCTTGATGTCATCGTCTC	58.800	52.381	8.29	0.00	0.00	3.36
1559	2619	0.392863	CAGGGATGCAACATCCACGA	60.393	55.000	24.10	0.00	39.93	4.35
1836	2896	7.872061	TCCTGTGGAGAATATATGTTGGTAT	57.128	36.000	0.00	0.00	0.00	2.73
1875	2935	6.238320	GCCACATTGAAAACAAAATAACAGCA	60.238	34.615	0.00	0.00	0.00	4.41
1906	2966	8.079809	CCGTTGTGATAGTCCTAAAACAAAAAT	58.920	33.333	6.71	0.00	31.06	1.82
1940	3000	5.049267	GCAAATGAACTTCGGTAGGTAACAA	60.049	40.000	0.00	0.00	41.41	2.83
2067	3127	7.395489	AGCATATGAGATGTTCCAAGAGTTTTT	59.605	33.333	6.97	0.00	0.00	1.94
2068	3128	6.888632	AGCATATGAGATGTTCCAAGAGTTTT	59.111	34.615	6.97	0.00	0.00	2.43
2069	3129	6.421485	AGCATATGAGATGTTCCAAGAGTTT	58.579	36.000	6.97	0.00	0.00	2.66
2109	3169	3.007473	AGAACCGGGACTTCAAAAACA	57.993	42.857	6.32	0.00	0.00	2.83
2134	3194	8.352201	TGATAGTTTAATGCACCATGCTTTATC	58.648	33.333	9.22	6.24	45.31	1.75
2150	3210	9.961265	CGGTATGATGACTACTTGATAGTTTAA	57.039	33.333	0.00	0.00	44.64	1.52
2198	3259	1.681076	TGCAGGAGCTGATGCAGAA	59.319	52.632	16.43	0.00	46.97	3.02
2513	3586	6.258727	ACATGATGATCGGACATTGTTTAGTC	59.741	38.462	0.00	0.00	0.00	2.59
2521	3594	4.677673	TCTCACATGATGATCGGACATT	57.322	40.909	0.00	0.00	36.48	2.71
2536	3609	5.105187	CCAATGAAGACTACTCCATCTCACA	60.105	44.000	0.00	0.00	0.00	3.58
2557	3630	7.616528	TGATCCATATAGAGATGTTCACCAA	57.383	36.000	0.00	0.00	0.00	3.67
2608	3681	1.697432	TGGAACACTGGAGACCGAAAT	59.303	47.619	0.00	0.00	0.00	2.17
2650	3723	2.364632	TGGGGTTAAACATGATGAGCG	58.635	47.619	0.00	0.00	0.00	5.03
2659	3732	3.083293	GCGGAATACTTGGGGTTAAACA	58.917	45.455	0.00	0.00	0.00	2.83
2669	3742	2.917701	TTGCACATGCGGAATACTTG	57.082	45.000	0.00	0.00	45.83	3.16
2670	3743	3.574614	GTTTTGCACATGCGGAATACTT	58.425	40.909	0.00	0.00	45.83	2.24
2692	3765	1.882682	CTTACAACGGGTGCACGACG	61.883	60.000	24.88	24.88	37.61	5.12
2696	3769	1.003223	GTTCACTTACAACGGGTGCAC	60.003	52.381	8.80	8.80	0.00	4.57
2710	3783	3.128938	GTGTGATAGGCTCTACGTTCACT	59.871	47.826	12.45	0.12	35.63	3.41
2744	3817	0.969149	TCTTCGTGCTGAGACACCAT	59.031	50.000	2.34	0.00	37.25	3.55
2770	3843	1.915489	TCCCTGAGTATGCACCATTGT	59.085	47.619	0.00	0.00	0.00	2.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.