Multiple sequence alignment - TraesCS7B01G151600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G151600 chr7B 100.000 3057 0 0 1 3057 201455675 201452619 0.000000e+00 5646.0
1 TraesCS7B01G151600 chr7B 92.794 1013 69 4 2048 3057 399758282 399757271 0.000000e+00 1463.0
2 TraesCS7B01G151600 chr7B 91.270 1008 83 5 2047 3051 375450434 375451439 0.000000e+00 1369.0
3 TraesCS7B01G151600 chr7B 89.899 297 23 4 1 297 554186274 554186563 2.880000e-100 375.0
4 TraesCS7B01G151600 chr7B 89.209 139 13 2 716 853 554891654 554891791 4.050000e-39 172.0
5 TraesCS7B01G151600 chr7D 94.330 1217 67 2 831 2046 230452248 230451033 0.000000e+00 1864.0
6 TraesCS7B01G151600 chr7D 88.667 300 24 3 1 297 520855878 520856170 1.040000e-94 357.0
7 TraesCS7B01G151600 chr7D 87.059 170 19 2 831 998 489122887 489123055 4.020000e-44 189.0
8 TraesCS7B01G151600 chr7D 86.826 167 19 3 834 998 514977827 514977662 1.870000e-42 183.0
9 TraesCS7B01G151600 chr2B 96.630 1009 32 2 2050 3057 521344815 521345822 0.000000e+00 1674.0
10 TraesCS7B01G151600 chr2B 94.164 1011 55 4 2050 3057 401269387 401270396 0.000000e+00 1537.0
11 TraesCS7B01G151600 chr2B 90.746 1005 87 5 2051 3052 132035469 132034468 0.000000e+00 1336.0
12 TraesCS7B01G151600 chr2B 88.102 1017 108 12 2049 3057 106304149 106305160 0.000000e+00 1195.0
13 TraesCS7B01G151600 chr2B 86.325 234 24 3 64 297 532546824 532546599 6.550000e-62 248.0
14 TraesCS7B01G151600 chr2B 94.915 118 6 0 716 833 799132835 799132952 5.210000e-43 185.0
15 TraesCS7B01G151600 chr2B 94.118 119 7 0 715 833 666102791 666102909 6.730000e-42 182.0
16 TraesCS7B01G151600 chr2B 93.388 121 8 0 716 836 748307154 748307274 2.420000e-41 180.0
17 TraesCS7B01G151600 chr3B 96.131 1008 39 0 2050 3057 780834935 780833928 0.000000e+00 1646.0
18 TraesCS7B01G151600 chr3B 95.726 117 5 0 716 832 52922041 52921925 4.020000e-44 189.0
19 TraesCS7B01G151600 chr5B 88.603 1009 103 10 2050 3052 596922574 596923576 0.000000e+00 1216.0
20 TraesCS7B01G151600 chr5B 88.393 1008 110 7 2050 3052 389502550 389503555 0.000000e+00 1206.0
21 TraesCS7B01G151600 chr7A 89.050 621 51 7 1429 2047 243353098 243352493 0.000000e+00 754.0
22 TraesCS7B01G151600 chr7A 93.074 231 16 0 1080 1310 243356761 243356531 3.780000e-89 339.0
23 TraesCS7B01G151600 chr7A 87.678 211 19 2 87 297 598291958 598292161 3.940000e-59 239.0
24 TraesCS7B01G151600 chr7A 91.935 62 5 0 19 80 598281669 598281730 1.510000e-13 87.9
25 TraesCS7B01G151600 chr5D 91.183 431 13 9 301 714 501374494 501374072 2.060000e-156 562.0
26 TraesCS7B01G151600 chr5D 94.915 118 6 0 715 832 384339599 384339716 5.210000e-43 185.0
27 TraesCS7B01G151600 chr5D 88.535 157 11 5 679 834 439217777 439217627 1.870000e-42 183.0
28 TraesCS7B01G151600 chr2D 90.867 427 13 9 301 711 313651307 313651723 1.600000e-152 549.0
29 TraesCS7B01G151600 chr2D 87.647 170 18 2 831 998 147346686 147346518 8.650000e-46 195.0
30 TraesCS7B01G151600 chr2D 85.882 170 21 2 831 998 81316461 81316629 8.710000e-41 178.0
31 TraesCS7B01G151600 chr6A 88.657 432 21 11 301 711 8457471 8457895 4.550000e-138 501.0
32 TraesCS7B01G151600 chr6A 84.916 179 20 5 831 1006 574401803 574401977 1.130000e-39 174.0
33 TraesCS7B01G151600 chrUn 87.059 170 18 4 831 998 22818141 22817974 4.020000e-44 189.0
34 TraesCS7B01G151600 chr4D 87.059 170 17 3 831 998 95828602 95828768 1.450000e-43 187.0
35 TraesCS7B01G151600 chr4B 94.215 121 7 0 716 836 371434442 371434322 5.210000e-43 185.0
36 TraesCS7B01G151600 chr4A 89.928 139 12 2 716 853 625085862 625085725 8.710000e-41 178.0
37 TraesCS7B01G151600 chr1D 85.143 175 21 4 831 1001 486174318 486174145 1.130000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G151600 chr7B 201452619 201455675 3056 True 5646.0 5646 100.000 1 3057 1 chr7B.!!$R1 3056
1 TraesCS7B01G151600 chr7B 399757271 399758282 1011 True 1463.0 1463 92.794 2048 3057 1 chr7B.!!$R2 1009
2 TraesCS7B01G151600 chr7B 375450434 375451439 1005 False 1369.0 1369 91.270 2047 3051 1 chr7B.!!$F1 1004
3 TraesCS7B01G151600 chr7D 230451033 230452248 1215 True 1864.0 1864 94.330 831 2046 1 chr7D.!!$R1 1215
4 TraesCS7B01G151600 chr2B 521344815 521345822 1007 False 1674.0 1674 96.630 2050 3057 1 chr2B.!!$F3 1007
5 TraesCS7B01G151600 chr2B 401269387 401270396 1009 False 1537.0 1537 94.164 2050 3057 1 chr2B.!!$F2 1007
6 TraesCS7B01G151600 chr2B 132034468 132035469 1001 True 1336.0 1336 90.746 2051 3052 1 chr2B.!!$R1 1001
7 TraesCS7B01G151600 chr2B 106304149 106305160 1011 False 1195.0 1195 88.102 2049 3057 1 chr2B.!!$F1 1008
8 TraesCS7B01G151600 chr3B 780833928 780834935 1007 True 1646.0 1646 96.131 2050 3057 1 chr3B.!!$R2 1007
9 TraesCS7B01G151600 chr5B 596922574 596923576 1002 False 1216.0 1216 88.603 2050 3052 1 chr5B.!!$F2 1002
10 TraesCS7B01G151600 chr5B 389502550 389503555 1005 False 1206.0 1206 88.393 2050 3052 1 chr5B.!!$F1 1002
11 TraesCS7B01G151600 chr7A 243352493 243356761 4268 True 546.5 754 91.062 1080 2047 2 chr7A.!!$R1 967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 829 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
836 837 0.104304 CGGACGGAGGGAGTATTTGG 59.896 60.0 0.00 0.00 0.00 3.28 F
1231 1233 0.322008 CGCAGGGAAAGAAGAAGGCT 60.322 55.0 0.00 0.00 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1636 4966 0.804989 CGAAAAGCTCCGCCTTGAAT 59.195 50.0 0.0 0.0 0.00 2.57 R
1637 4967 1.234615 CCGAAAAGCTCCGCCTTGAA 61.235 55.0 0.0 0.0 0.00 2.69 R
2880 6218 0.888619 CTTGGAGACGCCTGACACTA 59.111 55.0 0.0 0.0 37.63 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.285851 CCTTGCTGGAAGACCGTC 57.714 61.111 10.73 0.00 39.42 4.79
18 19 1.376037 CCTTGCTGGAAGACCGTCC 60.376 63.158 10.73 0.00 39.42 4.79
19 20 1.371183 CTTGCTGGAAGACCGTCCA 59.629 57.895 2.37 4.70 45.72 4.02
24 25 2.829094 TGGAAGACCGTCCAAGTGA 58.171 52.632 2.21 0.00 44.91 3.41
25 26 1.348064 TGGAAGACCGTCCAAGTGAT 58.652 50.000 2.21 0.00 44.91 3.06
26 27 1.697432 TGGAAGACCGTCCAAGTGATT 59.303 47.619 2.21 0.00 44.91 2.57
27 28 2.105821 TGGAAGACCGTCCAAGTGATTT 59.894 45.455 2.21 0.00 44.91 2.17
28 29 2.484264 GGAAGACCGTCCAAGTGATTTG 59.516 50.000 0.00 0.00 37.65 2.32
37 38 1.619654 CAAGTGATTTGGTGCTGGGA 58.380 50.000 0.00 0.00 32.95 4.37
38 39 1.542915 CAAGTGATTTGGTGCTGGGAG 59.457 52.381 0.00 0.00 32.95 4.30
39 40 0.773644 AGTGATTTGGTGCTGGGAGT 59.226 50.000 0.00 0.00 0.00 3.85
40 41 0.883833 GTGATTTGGTGCTGGGAGTG 59.116 55.000 0.00 0.00 0.00 3.51
41 42 0.251297 TGATTTGGTGCTGGGAGTGG 60.251 55.000 0.00 0.00 0.00 4.00
42 43 0.967380 GATTTGGTGCTGGGAGTGGG 60.967 60.000 0.00 0.00 0.00 4.61
43 44 2.445492 ATTTGGTGCTGGGAGTGGGG 62.445 60.000 0.00 0.00 0.00 4.96
44 45 4.918360 TGGTGCTGGGAGTGGGGT 62.918 66.667 0.00 0.00 0.00 4.95
45 46 4.351054 GGTGCTGGGAGTGGGGTG 62.351 72.222 0.00 0.00 0.00 4.61
46 47 3.249189 GTGCTGGGAGTGGGGTGA 61.249 66.667 0.00 0.00 0.00 4.02
47 48 2.204136 TGCTGGGAGTGGGGTGAT 60.204 61.111 0.00 0.00 0.00 3.06
48 49 2.273449 GCTGGGAGTGGGGTGATG 59.727 66.667 0.00 0.00 0.00 3.07
49 50 3.001514 CTGGGAGTGGGGTGATGG 58.998 66.667 0.00 0.00 0.00 3.51
50 51 2.613696 TGGGAGTGGGGTGATGGG 60.614 66.667 0.00 0.00 0.00 4.00
51 52 4.129148 GGGAGTGGGGTGATGGGC 62.129 72.222 0.00 0.00 0.00 5.36
52 53 4.489771 GGAGTGGGGTGATGGGCG 62.490 72.222 0.00 0.00 0.00 6.13
53 54 3.399181 GAGTGGGGTGATGGGCGA 61.399 66.667 0.00 0.00 0.00 5.54
54 55 3.391665 GAGTGGGGTGATGGGCGAG 62.392 68.421 0.00 0.00 0.00 5.03
75 76 3.880846 CGGCGCCCTTGCATCTTC 61.881 66.667 23.46 0.00 37.32 2.87
76 77 2.439156 GGCGCCCTTGCATCTTCT 60.439 61.111 18.11 0.00 37.32 2.85
77 78 2.768492 GGCGCCCTTGCATCTTCTG 61.768 63.158 18.11 0.00 37.32 3.02
88 89 2.381725 CATCTTCTGCAGCTCTGTGA 57.618 50.000 9.47 0.92 0.00 3.58
89 90 2.907634 CATCTTCTGCAGCTCTGTGAT 58.092 47.619 9.47 3.29 0.00 3.06
90 91 2.381725 TCTTCTGCAGCTCTGTGATG 57.618 50.000 9.47 0.00 34.74 3.07
96 97 3.075186 AGCTCTGTGATGCTGGCA 58.925 55.556 0.00 0.00 38.21 4.92
97 98 1.608154 AGCTCTGTGATGCTGGCAT 59.392 52.632 7.86 7.86 38.21 4.40
108 109 2.793288 TGCTGGCATCAGAGATCAAA 57.207 45.000 0.00 0.00 43.49 2.69
109 110 3.292492 TGCTGGCATCAGAGATCAAAT 57.708 42.857 0.00 0.00 43.49 2.32
110 111 2.949644 TGCTGGCATCAGAGATCAAATG 59.050 45.455 0.00 0.00 43.49 2.32
111 112 2.293677 GCTGGCATCAGAGATCAAATGG 59.706 50.000 0.00 0.00 43.49 3.16
112 113 2.293677 CTGGCATCAGAGATCAAATGGC 59.706 50.000 12.95 12.95 43.49 4.40
113 114 1.266175 GGCATCAGAGATCAAATGGCG 59.734 52.381 0.00 0.00 35.39 5.69
114 115 1.334779 GCATCAGAGATCAAATGGCGC 60.335 52.381 0.00 0.00 0.00 6.53
115 116 1.070108 CATCAGAGATCAAATGGCGCG 60.070 52.381 0.00 0.00 0.00 6.86
116 117 0.811219 TCAGAGATCAAATGGCGCGG 60.811 55.000 8.83 0.00 0.00 6.46
117 118 2.182842 AGAGATCAAATGGCGCGGC 61.183 57.895 27.61 27.61 0.00 6.53
133 134 2.751837 GCCCTTTGCCTTCTCCGG 60.752 66.667 0.00 0.00 0.00 5.14
134 135 3.077907 CCCTTTGCCTTCTCCGGA 58.922 61.111 2.93 2.93 0.00 5.14
135 136 1.078143 CCCTTTGCCTTCTCCGGAG 60.078 63.158 26.32 26.32 0.00 4.63
136 137 1.746991 CCTTTGCCTTCTCCGGAGC 60.747 63.158 27.39 16.58 0.00 4.70
137 138 2.047274 TTTGCCTTCTCCGGAGCG 60.047 61.111 27.39 18.76 0.00 5.03
138 139 4.760047 TTGCCTTCTCCGGAGCGC 62.760 66.667 27.39 25.00 0.00 5.92
164 165 4.379174 GCTCAAGGCGTCCAGAAA 57.621 55.556 0.00 0.00 0.00 2.52
165 166 2.859992 GCTCAAGGCGTCCAGAAAT 58.140 52.632 0.00 0.00 0.00 2.17
166 167 1.168714 GCTCAAGGCGTCCAGAAATT 58.831 50.000 0.00 0.00 0.00 1.82
167 168 1.541588 GCTCAAGGCGTCCAGAAATTT 59.458 47.619 0.00 0.00 0.00 1.82
168 169 2.414691 GCTCAAGGCGTCCAGAAATTTC 60.415 50.000 10.33 10.33 0.00 2.17
169 170 1.804151 TCAAGGCGTCCAGAAATTTCG 59.196 47.619 12.42 7.63 0.00 3.46
170 171 1.135689 CAAGGCGTCCAGAAATTTCGG 60.136 52.381 17.65 17.65 0.00 4.30
171 172 1.136774 GGCGTCCAGAAATTTCGGC 59.863 57.895 18.47 13.32 39.49 5.54
172 173 1.136774 GCGTCCAGAAATTTCGGCC 59.863 57.895 18.47 10.55 0.00 6.13
173 174 1.800681 CGTCCAGAAATTTCGGCCC 59.199 57.895 18.47 12.63 0.00 5.80
174 175 1.654023 CGTCCAGAAATTTCGGCCCC 61.654 60.000 18.47 10.95 0.00 5.80
175 176 0.323451 GTCCAGAAATTTCGGCCCCT 60.323 55.000 18.47 0.00 0.00 4.79
176 177 0.034477 TCCAGAAATTTCGGCCCCTC 60.034 55.000 18.47 0.00 0.00 4.30
177 178 1.376609 CCAGAAATTTCGGCCCCTCG 61.377 60.000 12.42 0.00 0.00 4.63
178 179 1.077716 AGAAATTTCGGCCCCTCGG 60.078 57.895 12.42 0.00 0.00 4.63
179 180 1.078001 GAAATTTCGGCCCCTCGGA 60.078 57.895 1.68 0.00 0.00 4.55
180 181 1.077716 AAATTTCGGCCCCTCGGAG 60.078 57.895 0.00 0.00 0.00 4.63
181 182 2.552231 AAATTTCGGCCCCTCGGAGG 62.552 60.000 17.41 17.41 34.30 4.30
189 190 2.770048 CCCTCGGAGGCCAAGGAT 60.770 66.667 18.91 0.00 32.73 3.24
190 191 2.507944 CCTCGGAGGCCAAGGATG 59.492 66.667 11.83 0.00 31.44 3.51
191 192 2.203126 CTCGGAGGCCAAGGATGC 60.203 66.667 5.01 0.00 0.00 3.91
192 193 4.161295 TCGGAGGCCAAGGATGCG 62.161 66.667 5.01 0.00 0.00 4.73
193 194 4.161295 CGGAGGCCAAGGATGCGA 62.161 66.667 5.01 0.00 0.00 5.10
194 195 2.203126 GGAGGCCAAGGATGCGAG 60.203 66.667 5.01 0.00 0.00 5.03
195 196 2.203126 GAGGCCAAGGATGCGAGG 60.203 66.667 5.01 0.00 0.00 4.63
196 197 2.688666 AGGCCAAGGATGCGAGGA 60.689 61.111 5.01 0.00 0.00 3.71
197 198 2.257409 GAGGCCAAGGATGCGAGGAA 62.257 60.000 5.01 0.00 0.00 3.36
198 199 2.115291 GGCCAAGGATGCGAGGAAC 61.115 63.158 0.00 0.00 0.00 3.62
199 200 2.464459 GCCAAGGATGCGAGGAACG 61.464 63.158 2.29 0.00 45.66 3.95
200 201 1.218047 CCAAGGATGCGAGGAACGA 59.782 57.895 0.00 0.00 45.77 3.85
201 202 1.084370 CCAAGGATGCGAGGAACGAC 61.084 60.000 0.00 0.00 45.77 4.34
202 203 1.153823 AAGGATGCGAGGAACGACG 60.154 57.895 0.00 0.00 45.77 5.12
203 204 1.592400 AAGGATGCGAGGAACGACGA 61.592 55.000 0.00 0.00 45.77 4.20
204 205 1.586564 GGATGCGAGGAACGACGAG 60.587 63.158 0.00 0.00 45.77 4.18
205 206 1.136984 GATGCGAGGAACGACGAGT 59.863 57.895 0.00 0.00 45.77 4.18
206 207 1.134530 GATGCGAGGAACGACGAGTG 61.135 60.000 0.00 0.00 45.77 3.51
207 208 2.504244 GCGAGGAACGACGAGTGG 60.504 66.667 0.00 0.00 45.77 4.00
208 209 2.504244 CGAGGAACGACGAGTGGC 60.504 66.667 0.00 0.00 45.77 5.01
210 211 4.719369 AGGAACGACGAGTGGCGC 62.719 66.667 0.00 0.00 46.04 6.53
211 212 4.719369 GGAACGACGAGTGGCGCT 62.719 66.667 7.64 0.00 46.04 5.92
212 213 3.173240 GAACGACGAGTGGCGCTC 61.173 66.667 17.98 17.98 46.04 5.03
213 214 4.719369 AACGACGAGTGGCGCTCC 62.719 66.667 21.53 8.24 46.04 4.70
262 263 4.749310 CTGGCGCGACAGAAGGCT 62.749 66.667 38.64 0.00 40.97 4.58
263 264 4.314440 TGGCGCGACAGAAGGCTT 62.314 61.111 12.71 0.00 0.00 4.35
264 265 3.793144 GGCGCGACAGAAGGCTTG 61.793 66.667 12.10 0.00 0.00 4.01
265 266 3.793144 GCGCGACAGAAGGCTTGG 61.793 66.667 12.10 0.00 0.00 3.61
266 267 3.793144 CGCGACAGAAGGCTTGGC 61.793 66.667 3.46 0.00 0.00 4.52
300 301 4.821589 CGCCCTCCGAAGCACCTC 62.822 72.222 0.00 0.00 40.02 3.85
301 302 4.475135 GCCCTCCGAAGCACCTCC 62.475 72.222 0.00 0.00 0.00 4.30
302 303 2.685380 CCCTCCGAAGCACCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
303 304 2.294078 CCCTCCGAAGCACCTCCTT 61.294 63.158 0.00 0.00 0.00 3.36
304 305 1.078848 CCTCCGAAGCACCTCCTTG 60.079 63.158 0.00 0.00 0.00 3.61
305 306 1.743252 CTCCGAAGCACCTCCTTGC 60.743 63.158 0.00 0.00 43.34 4.01
346 347 4.379243 CGGTCAAGGCCACGCTCT 62.379 66.667 5.01 0.00 0.00 4.09
347 348 2.743928 GGTCAAGGCCACGCTCTG 60.744 66.667 5.01 0.00 0.00 3.35
348 349 2.343758 GTCAAGGCCACGCTCTGA 59.656 61.111 5.01 0.00 0.00 3.27
349 350 2.029844 GTCAAGGCCACGCTCTGAC 61.030 63.158 5.01 3.97 34.83 3.51
350 351 2.743928 CAAGGCCACGCTCTGACC 60.744 66.667 5.01 0.00 0.00 4.02
351 352 4.021925 AAGGCCACGCTCTGACCC 62.022 66.667 5.01 0.00 0.00 4.46
359 360 3.775654 GCTCTGACCCGGGGTGAG 61.776 72.222 26.67 25.72 38.27 3.51
360 361 3.077556 CTCTGACCCGGGGTGAGG 61.078 72.222 29.04 17.45 37.52 3.86
361 362 3.907027 CTCTGACCCGGGGTGAGGT 62.907 68.421 29.04 0.68 37.52 3.85
362 363 3.706373 CTGACCCGGGGTGAGGTG 61.706 72.222 26.67 0.00 35.25 4.00
363 364 4.242586 TGACCCGGGGTGAGGTGA 62.243 66.667 26.67 0.00 35.25 4.02
364 365 2.687566 GACCCGGGGTGAGGTGAT 60.688 66.667 26.67 0.00 35.25 3.06
365 366 3.009115 ACCCGGGGTGAGGTGATG 61.009 66.667 27.92 0.00 34.20 3.07
366 367 3.797353 CCCGGGGTGAGGTGATGG 61.797 72.222 14.71 0.00 0.00 3.51
367 368 4.489771 CCGGGGTGAGGTGATGGC 62.490 72.222 0.00 0.00 0.00 4.40
368 369 4.838152 CGGGGTGAGGTGATGGCG 62.838 72.222 0.00 0.00 0.00 5.69
369 370 4.489771 GGGGTGAGGTGATGGCGG 62.490 72.222 0.00 0.00 0.00 6.13
407 408 4.719369 GCCTCGACGTCCGCACTT 62.719 66.667 10.58 0.00 38.37 3.16
408 409 2.805353 CCTCGACGTCCGCACTTG 60.805 66.667 10.58 0.00 38.37 3.16
409 410 2.254350 CTCGACGTCCGCACTTGA 59.746 61.111 10.58 0.00 38.37 3.02
410 411 1.154016 CTCGACGTCCGCACTTGAT 60.154 57.895 10.58 0.00 38.37 2.57
411 412 1.406219 CTCGACGTCCGCACTTGATG 61.406 60.000 10.58 0.00 38.37 3.07
412 413 1.443702 CGACGTCCGCACTTGATGA 60.444 57.895 10.58 0.00 0.00 2.92
413 414 1.674611 CGACGTCCGCACTTGATGAC 61.675 60.000 10.58 0.00 0.00 3.06
414 415 3.072598 CGTCCGCACTTGATGACG 58.927 61.111 6.58 6.58 43.64 4.35
415 416 2.778679 GTCCGCACTTGATGACGC 59.221 61.111 0.00 0.00 0.00 5.19
416 417 2.434185 TCCGCACTTGATGACGCC 60.434 61.111 0.00 0.00 0.00 5.68
417 418 3.853330 CCGCACTTGATGACGCCG 61.853 66.667 0.00 0.00 0.00 6.46
418 419 2.809174 CGCACTTGATGACGCCGA 60.809 61.111 0.00 0.00 0.00 5.54
419 420 2.167219 CGCACTTGATGACGCCGAT 61.167 57.895 0.00 0.00 0.00 4.18
420 421 1.349627 GCACTTGATGACGCCGATG 59.650 57.895 0.00 0.00 0.00 3.84
421 422 1.361668 GCACTTGATGACGCCGATGT 61.362 55.000 0.00 0.00 0.00 3.06
422 423 1.078709 CACTTGATGACGCCGATGTT 58.921 50.000 0.00 0.00 0.00 2.71
423 424 1.078709 ACTTGATGACGCCGATGTTG 58.921 50.000 0.00 0.00 0.00 3.33
424 425 1.337728 ACTTGATGACGCCGATGTTGA 60.338 47.619 0.00 0.00 0.00 3.18
425 426 1.061131 CTTGATGACGCCGATGTTGAC 59.939 52.381 0.00 0.00 0.00 3.18
426 427 0.739462 TGATGACGCCGATGTTGACC 60.739 55.000 0.00 0.00 0.00 4.02
427 428 0.460284 GATGACGCCGATGTTGACCT 60.460 55.000 0.00 0.00 0.00 3.85
428 429 0.460284 ATGACGCCGATGTTGACCTC 60.460 55.000 0.00 0.00 0.00 3.85
429 430 2.126071 ACGCCGATGTTGACCTCG 60.126 61.111 0.00 2.43 34.51 4.63
430 431 2.180769 CGCCGATGTTGACCTCGA 59.819 61.111 9.83 0.00 36.35 4.04
431 432 2.158959 CGCCGATGTTGACCTCGAC 61.159 63.158 9.83 0.00 36.35 4.20
432 433 1.810030 GCCGATGTTGACCTCGACC 60.810 63.158 9.83 0.00 36.35 4.79
433 434 1.153628 CCGATGTTGACCTCGACCC 60.154 63.158 9.83 0.00 36.35 4.46
434 435 1.153628 CGATGTTGACCTCGACCCC 60.154 63.158 3.20 0.00 36.35 4.95
435 436 1.153628 GATGTTGACCTCGACCCCG 60.154 63.158 0.00 0.00 37.07 5.73
436 437 2.573609 GATGTTGACCTCGACCCCGG 62.574 65.000 0.00 0.00 36.24 5.73
437 438 2.993264 GTTGACCTCGACCCCGGA 60.993 66.667 0.73 0.00 36.24 5.14
438 439 2.993264 TTGACCTCGACCCCGGAC 60.993 66.667 0.73 0.00 36.24 4.79
441 442 3.976701 GACCTCGACCCCGGACGTA 62.977 68.421 0.73 0.00 35.12 3.57
442 443 3.207669 CCTCGACCCCGGACGTAG 61.208 72.222 0.73 0.00 35.12 3.51
443 444 3.207669 CTCGACCCCGGACGTAGG 61.208 72.222 0.73 0.00 35.12 3.18
455 456 4.271816 CGTAGGCGGCAGCGAGAT 62.272 66.667 13.08 0.00 46.35 2.75
456 457 2.904676 CGTAGGCGGCAGCGAGATA 61.905 63.158 13.08 0.00 46.35 1.98
457 458 1.081108 GTAGGCGGCAGCGAGATAG 60.081 63.158 13.08 0.00 46.35 2.08
458 459 1.228154 TAGGCGGCAGCGAGATAGA 60.228 57.895 13.08 0.00 46.35 1.98
459 460 0.609406 TAGGCGGCAGCGAGATAGAT 60.609 55.000 13.08 0.00 46.35 1.98
460 461 1.445238 GGCGGCAGCGAGATAGATC 60.445 63.158 3.07 0.00 46.35 2.75
461 462 1.799519 GCGGCAGCGAGATAGATCG 60.800 63.158 0.00 0.00 45.48 3.69
471 472 3.497118 CGAGATAGATCGCACAAGATCC 58.503 50.000 3.64 0.00 46.06 3.36
472 473 3.497118 GAGATAGATCGCACAAGATCCG 58.503 50.000 3.64 0.00 46.06 4.18
473 474 2.230025 AGATAGATCGCACAAGATCCGG 59.770 50.000 0.00 0.00 46.06 5.14
474 475 0.673985 TAGATCGCACAAGATCCGGG 59.326 55.000 0.00 0.00 46.06 5.73
475 476 1.043116 AGATCGCACAAGATCCGGGA 61.043 55.000 0.00 0.00 46.06 5.14
476 477 0.598680 GATCGCACAAGATCCGGGAG 60.599 60.000 0.00 0.00 40.73 4.30
491 492 4.814294 GAGGTCATCGGCGGCGTT 62.814 66.667 31.06 20.74 0.00 4.84
492 493 4.388499 AGGTCATCGGCGGCGTTT 62.388 61.111 31.06 17.04 0.00 3.60
493 494 2.509786 GGTCATCGGCGGCGTTTA 60.510 61.111 31.06 12.96 0.00 2.01
494 495 2.699212 GTCATCGGCGGCGTTTAC 59.301 61.111 31.06 19.99 0.00 2.01
495 496 1.808390 GTCATCGGCGGCGTTTACT 60.808 57.895 31.06 9.12 0.00 2.24
496 497 1.517694 TCATCGGCGGCGTTTACTC 60.518 57.895 31.06 0.00 0.00 2.59
497 498 2.581409 ATCGGCGGCGTTTACTCG 60.581 61.111 31.06 0.00 0.00 4.18
498 499 3.055080 ATCGGCGGCGTTTACTCGA 62.055 57.895 31.06 9.62 0.00 4.04
499 500 2.931713 ATCGGCGGCGTTTACTCGAG 62.932 60.000 31.06 11.84 0.00 4.04
500 501 2.884207 GGCGGCGTTTACTCGAGG 60.884 66.667 18.41 0.00 0.00 4.63
501 502 2.884207 GCGGCGTTTACTCGAGGG 60.884 66.667 18.41 1.46 0.00 4.30
502 503 2.202703 CGGCGTTTACTCGAGGGG 60.203 66.667 18.41 1.82 0.00 4.79
503 504 2.703798 CGGCGTTTACTCGAGGGGA 61.704 63.158 18.41 0.00 0.00 4.81
511 512 2.598985 CTCGAGGGGAGGGGATCG 60.599 72.222 3.91 0.00 39.22 3.69
512 513 4.916314 TCGAGGGGAGGGGATCGC 62.916 72.222 0.06 0.06 40.10 4.58
514 515 3.551407 GAGGGGAGGGGATCGCAC 61.551 72.222 12.32 5.01 42.56 5.34
517 518 4.222847 GGGAGGGGATCGCACGAC 62.223 72.222 12.32 0.00 40.52 4.34
518 519 4.570663 GGAGGGGATCGCACGACG 62.571 72.222 12.32 0.00 45.62 5.12
519 520 4.570663 GAGGGGATCGCACGACGG 62.571 72.222 12.32 0.00 43.89 4.79
529 530 3.349006 CACGACGGCAGCTGCTTT 61.349 61.111 35.82 23.72 41.70 3.51
530 531 2.591715 ACGACGGCAGCTGCTTTT 60.592 55.556 35.82 21.16 41.70 2.27
531 532 1.301401 ACGACGGCAGCTGCTTTTA 60.301 52.632 35.82 0.00 41.70 1.52
532 533 1.291877 ACGACGGCAGCTGCTTTTAG 61.292 55.000 35.82 24.45 41.70 1.85
533 534 1.291877 CGACGGCAGCTGCTTTTAGT 61.292 55.000 35.82 25.83 41.70 2.24
534 535 0.444260 GACGGCAGCTGCTTTTAGTC 59.556 55.000 35.82 28.48 41.70 2.59
535 536 0.250295 ACGGCAGCTGCTTTTAGTCA 60.250 50.000 35.82 0.00 41.70 3.41
536 537 0.874390 CGGCAGCTGCTTTTAGTCAA 59.126 50.000 35.82 0.00 41.70 3.18
537 538 1.135859 CGGCAGCTGCTTTTAGTCAAG 60.136 52.381 35.82 11.98 41.70 3.02
538 539 1.200948 GGCAGCTGCTTTTAGTCAAGG 59.799 52.381 35.82 0.00 41.70 3.61
539 540 1.200948 GCAGCTGCTTTTAGTCAAGGG 59.799 52.381 31.33 0.00 38.21 3.95
540 541 1.815003 CAGCTGCTTTTAGTCAAGGGG 59.185 52.381 0.00 0.00 0.00 4.79
541 542 1.705186 AGCTGCTTTTAGTCAAGGGGA 59.295 47.619 0.00 0.00 0.00 4.81
542 543 2.310052 AGCTGCTTTTAGTCAAGGGGAT 59.690 45.455 0.00 0.00 0.00 3.85
543 544 2.685388 GCTGCTTTTAGTCAAGGGGATC 59.315 50.000 0.00 0.00 0.00 3.36
544 545 2.939103 CTGCTTTTAGTCAAGGGGATCG 59.061 50.000 0.00 0.00 0.00 3.69
545 546 2.289565 GCTTTTAGTCAAGGGGATCGG 58.710 52.381 0.00 0.00 0.00 4.18
546 547 2.919228 CTTTTAGTCAAGGGGATCGGG 58.081 52.381 0.00 0.00 0.00 5.14
547 548 2.257391 TTTAGTCAAGGGGATCGGGA 57.743 50.000 0.00 0.00 0.00 5.14
548 549 2.489528 TTAGTCAAGGGGATCGGGAT 57.510 50.000 0.00 0.00 0.00 3.85
549 550 2.011122 TAGTCAAGGGGATCGGGATC 57.989 55.000 0.00 0.00 37.11 3.36
550 551 1.115930 AGTCAAGGGGATCGGGATCG 61.116 60.000 2.80 0.00 38.69 3.69
551 552 2.031163 CAAGGGGATCGGGATCGC 59.969 66.667 15.15 15.15 46.32 4.58
561 562 4.899239 GGGATCGCACGAGGGCAG 62.899 72.222 4.64 0.00 0.00 4.85
571 572 3.195698 GAGGGCAGCGGCGTTTAG 61.196 66.667 9.37 0.00 42.47 1.85
572 573 3.952628 GAGGGCAGCGGCGTTTAGT 62.953 63.158 9.37 0.00 42.47 2.24
573 574 3.497031 GGGCAGCGGCGTTTAGTC 61.497 66.667 9.37 0.00 42.47 2.59
580 581 3.291611 GGCGTTTAGTCGAGGGGA 58.708 61.111 0.00 0.00 0.00 4.81
581 582 1.821258 GGCGTTTAGTCGAGGGGAT 59.179 57.895 0.00 0.00 0.00 3.85
582 583 0.249363 GGCGTTTAGTCGAGGGGATC 60.249 60.000 0.00 0.00 0.00 3.36
591 592 2.203714 GAGGGGATCGGGGAGGAG 60.204 72.222 0.00 0.00 0.00 3.69
592 593 4.565850 AGGGGATCGGGGAGGAGC 62.566 72.222 0.00 0.00 0.00 4.70
593 594 4.880426 GGGGATCGGGGAGGAGCA 62.880 72.222 0.00 0.00 0.00 4.26
594 595 3.551407 GGGATCGGGGAGGAGCAC 61.551 72.222 0.00 0.00 0.00 4.40
595 596 2.444895 GGATCGGGGAGGAGCACT 60.445 66.667 0.00 0.00 0.00 4.40
596 597 2.801631 GGATCGGGGAGGAGCACTG 61.802 68.421 0.00 0.00 0.00 3.66
597 598 2.039624 ATCGGGGAGGAGCACTGT 59.960 61.111 0.00 0.00 0.00 3.55
598 599 1.613630 ATCGGGGAGGAGCACTGTT 60.614 57.895 0.00 0.00 0.00 3.16
599 600 1.201429 ATCGGGGAGGAGCACTGTTT 61.201 55.000 0.00 0.00 0.00 2.83
600 601 1.376037 CGGGGAGGAGCACTGTTTC 60.376 63.158 0.00 0.00 0.00 2.78
601 602 1.376037 GGGGAGGAGCACTGTTTCG 60.376 63.158 0.00 0.00 0.00 3.46
602 603 1.371558 GGGAGGAGCACTGTTTCGT 59.628 57.895 0.00 0.00 0.00 3.85
603 604 0.951040 GGGAGGAGCACTGTTTCGTG 60.951 60.000 0.00 0.00 37.94 4.35
609 610 2.972505 CACTGTTTCGTGCGGGCT 60.973 61.111 0.00 0.00 0.00 5.19
610 611 2.972505 ACTGTTTCGTGCGGGCTG 60.973 61.111 0.00 0.00 0.00 4.85
611 612 3.726517 CTGTTTCGTGCGGGCTGG 61.727 66.667 0.00 0.00 0.00 4.85
614 615 4.572571 TTTCGTGCGGGCTGGGTT 62.573 61.111 0.00 0.00 0.00 4.11
615 616 4.572571 TTCGTGCGGGCTGGGTTT 62.573 61.111 0.00 0.00 0.00 3.27
616 617 4.572571 TCGTGCGGGCTGGGTTTT 62.573 61.111 0.00 0.00 0.00 2.43
617 618 3.601685 CGTGCGGGCTGGGTTTTT 61.602 61.111 0.00 0.00 0.00 1.94
632 633 1.649815 TTTTTAGTGCGTGCGTGGG 59.350 52.632 0.00 0.00 0.00 4.61
633 634 1.787057 TTTTTAGTGCGTGCGTGGGG 61.787 55.000 0.00 0.00 0.00 4.96
634 635 4.690719 TTAGTGCGTGCGTGGGGG 62.691 66.667 0.00 0.00 0.00 5.40
662 663 3.076079 GGGGGAGACGAAAATTAACCA 57.924 47.619 0.00 0.00 0.00 3.67
663 664 3.423749 GGGGGAGACGAAAATTAACCAA 58.576 45.455 0.00 0.00 0.00 3.67
664 665 3.192001 GGGGGAGACGAAAATTAACCAAC 59.808 47.826 0.00 0.00 0.00 3.77
665 666 3.120095 GGGGAGACGAAAATTAACCAACG 60.120 47.826 0.00 0.00 0.00 4.10
666 667 3.747529 GGGAGACGAAAATTAACCAACGA 59.252 43.478 0.00 0.00 0.00 3.85
667 668 4.213906 GGGAGACGAAAATTAACCAACGAA 59.786 41.667 0.00 0.00 0.00 3.85
668 669 5.277925 GGGAGACGAAAATTAACCAACGAAA 60.278 40.000 0.00 0.00 0.00 3.46
669 670 6.200808 GGAGACGAAAATTAACCAACGAAAA 58.799 36.000 0.00 0.00 0.00 2.29
670 671 6.692249 GGAGACGAAAATTAACCAACGAAAAA 59.308 34.615 0.00 0.00 0.00 1.94
689 690 2.172851 AAAACCGCGGTGACTATTCA 57.827 45.000 34.95 0.00 0.00 2.57
690 691 2.396590 AAACCGCGGTGACTATTCAT 57.603 45.000 34.95 10.02 33.11 2.57
691 692 1.935933 AACCGCGGTGACTATTCATC 58.064 50.000 34.95 0.00 33.11 2.92
692 693 0.821517 ACCGCGGTGACTATTCATCA 59.178 50.000 33.75 0.00 31.51 3.07
693 694 1.206132 ACCGCGGTGACTATTCATCAA 59.794 47.619 33.75 0.00 31.51 2.57
694 695 1.593006 CCGCGGTGACTATTCATCAAC 59.407 52.381 19.50 0.00 31.51 3.18
695 696 2.540515 CGCGGTGACTATTCATCAACT 58.459 47.619 0.00 0.00 31.51 3.16
696 697 2.282555 CGCGGTGACTATTCATCAACTG 59.717 50.000 0.00 0.00 31.51 3.16
697 698 3.521560 GCGGTGACTATTCATCAACTGA 58.478 45.455 0.00 0.00 31.51 3.41
699 700 4.391830 GCGGTGACTATTCATCAACTGAAA 59.608 41.667 0.00 0.00 46.62 2.69
700 701 5.671329 GCGGTGACTATTCATCAACTGAAAC 60.671 44.000 0.00 0.00 46.62 2.78
701 702 5.408299 CGGTGACTATTCATCAACTGAAACA 59.592 40.000 0.00 0.00 46.62 2.83
702 703 6.092670 CGGTGACTATTCATCAACTGAAACAT 59.907 38.462 0.00 0.00 46.62 2.71
703 704 7.361201 CGGTGACTATTCATCAACTGAAACATT 60.361 37.037 0.00 0.00 46.62 2.71
704 705 8.946085 GGTGACTATTCATCAACTGAAACATTA 58.054 33.333 0.00 0.00 46.62 1.90
705 706 9.979270 GTGACTATTCATCAACTGAAACATTAG 57.021 33.333 0.00 0.00 46.62 1.73
706 707 9.166173 TGACTATTCATCAACTGAAACATTAGG 57.834 33.333 0.00 0.00 46.62 2.69
707 708 9.383519 GACTATTCATCAACTGAAACATTAGGA 57.616 33.333 0.00 0.00 46.62 2.94
708 709 9.388506 ACTATTCATCAACTGAAACATTAGGAG 57.611 33.333 0.00 0.00 46.62 3.69
709 710 9.388506 CTATTCATCAACTGAAACATTAGGAGT 57.611 33.333 0.00 0.00 46.62 3.85
711 712 9.911788 ATTCATCAACTGAAACATTAGGAGTAT 57.088 29.630 0.00 0.00 46.62 2.12
714 715 9.265901 CATCAACTGAAACATTAGGAGTATAGG 57.734 37.037 0.00 0.00 0.00 2.57
715 716 8.375493 TCAACTGAAACATTAGGAGTATAGGT 57.625 34.615 0.00 0.00 0.00 3.08
716 717 9.483489 TCAACTGAAACATTAGGAGTATAGGTA 57.517 33.333 0.00 0.00 0.00 3.08
717 718 9.530633 CAACTGAAACATTAGGAGTATAGGTAC 57.469 37.037 0.00 0.00 0.00 3.34
718 719 9.490083 AACTGAAACATTAGGAGTATAGGTACT 57.510 33.333 0.00 0.00 43.76 2.73
727 728 3.786368 AGTATAGGTACTCCCTCCGTC 57.214 52.381 0.00 0.00 44.81 4.79
728 729 2.374839 AGTATAGGTACTCCCTCCGTCC 59.625 54.545 0.00 0.00 44.81 4.79
729 730 0.110104 ATAGGTACTCCCTCCGTCCG 59.890 60.000 0.00 0.00 44.81 4.79
730 731 0.982852 TAGGTACTCCCTCCGTCCGA 60.983 60.000 0.00 0.00 44.81 4.55
731 732 1.379044 GGTACTCCCTCCGTCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
732 733 0.967380 GGTACTCCCTCCGTCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
733 734 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
734 735 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
735 736 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
736 737 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
737 738 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
738 739 1.753073 TCCCTCCGTCCGAAAATACTC 59.247 52.381 0.00 0.00 0.00 2.59
739 740 1.535437 CCCTCCGTCCGAAAATACTCG 60.535 57.143 0.00 0.00 38.58 4.18
740 741 1.133790 CCTCCGTCCGAAAATACTCGT 59.866 52.381 0.00 0.00 37.11 4.18
741 742 2.448219 CTCCGTCCGAAAATACTCGTC 58.552 52.381 0.00 0.00 37.11 4.20
742 743 1.186030 CCGTCCGAAAATACTCGTCG 58.814 55.000 0.00 0.00 37.11 5.12
743 744 1.202065 CCGTCCGAAAATACTCGTCGA 60.202 52.381 0.00 0.00 36.83 4.20
744 745 2.508867 CGTCCGAAAATACTCGTCGAA 58.491 47.619 0.00 0.00 36.83 3.71
745 746 2.525096 CGTCCGAAAATACTCGTCGAAG 59.475 50.000 0.00 0.00 36.83 3.79
746 747 2.850647 GTCCGAAAATACTCGTCGAAGG 59.149 50.000 0.00 0.00 37.11 3.46
747 748 2.749076 TCCGAAAATACTCGTCGAAGGA 59.251 45.455 0.00 0.00 37.11 3.36
748 749 3.191162 TCCGAAAATACTCGTCGAAGGAA 59.809 43.478 0.00 0.00 37.11 3.36
749 750 4.110482 CCGAAAATACTCGTCGAAGGAAT 58.890 43.478 0.00 0.00 37.11 3.01
750 751 4.026804 CCGAAAATACTCGTCGAAGGAATG 60.027 45.833 0.00 0.00 37.11 2.67
751 752 4.796830 CGAAAATACTCGTCGAAGGAATGA 59.203 41.667 0.00 0.00 36.92 2.57
752 753 5.287752 CGAAAATACTCGTCGAAGGAATGAA 59.712 40.000 0.00 0.00 36.92 2.57
753 754 6.019801 CGAAAATACTCGTCGAAGGAATGAAT 60.020 38.462 0.00 0.00 36.92 2.57
754 755 6.589830 AAATACTCGTCGAAGGAATGAATG 57.410 37.500 0.00 0.00 0.00 2.67
755 756 3.594603 ACTCGTCGAAGGAATGAATGT 57.405 42.857 0.00 0.00 0.00 2.71
756 757 4.713824 ACTCGTCGAAGGAATGAATGTA 57.286 40.909 0.00 0.00 0.00 2.29
757 758 5.263968 ACTCGTCGAAGGAATGAATGTAT 57.736 39.130 0.00 0.00 0.00 2.29
758 759 5.282510 ACTCGTCGAAGGAATGAATGTATC 58.717 41.667 0.00 0.00 0.00 2.24
759 760 5.067936 ACTCGTCGAAGGAATGAATGTATCT 59.932 40.000 0.00 0.00 0.00 1.98
760 761 6.262496 ACTCGTCGAAGGAATGAATGTATCTA 59.738 38.462 0.00 0.00 0.00 1.98
761 762 6.669278 TCGTCGAAGGAATGAATGTATCTAG 58.331 40.000 0.00 0.00 0.00 2.43
762 763 6.485648 TCGTCGAAGGAATGAATGTATCTAGA 59.514 38.462 0.00 0.00 0.00 2.43
763 764 6.799441 CGTCGAAGGAATGAATGTATCTAGAG 59.201 42.308 0.00 0.00 0.00 2.43
764 765 7.087639 GTCGAAGGAATGAATGTATCTAGAGG 58.912 42.308 0.00 0.00 0.00 3.69
765 766 6.778069 TCGAAGGAATGAATGTATCTAGAGGT 59.222 38.462 0.00 0.00 0.00 3.85
766 767 7.942894 TCGAAGGAATGAATGTATCTAGAGGTA 59.057 37.037 0.00 0.00 0.00 3.08
767 768 8.744652 CGAAGGAATGAATGTATCTAGAGGTAT 58.255 37.037 0.00 0.00 0.00 2.73
818 819 7.072177 TGCATTTCTCTAACAAGTATTTCCG 57.928 36.000 0.00 0.00 0.00 4.30
819 820 6.093495 TGCATTTCTCTAACAAGTATTTCCGG 59.907 38.462 0.00 0.00 0.00 5.14
820 821 6.315393 GCATTTCTCTAACAAGTATTTCCGGA 59.685 38.462 0.00 0.00 0.00 5.14
821 822 7.676572 GCATTTCTCTAACAAGTATTTCCGGAC 60.677 40.741 1.83 0.00 0.00 4.79
822 823 4.990257 TCTCTAACAAGTATTTCCGGACG 58.010 43.478 1.83 0.00 0.00 4.79
823 824 4.110482 CTCTAACAAGTATTTCCGGACGG 58.890 47.826 1.83 3.96 0.00 4.79
824 825 3.763360 TCTAACAAGTATTTCCGGACGGA 59.237 43.478 1.83 9.76 43.52 4.69
825 826 2.667473 ACAAGTATTTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
826 827 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
827 828 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
828 829 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
829 830 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
836 837 0.104304 CGGACGGAGGGAGTATTTGG 59.896 60.000 0.00 0.00 0.00 3.28
850 851 8.174757 AGGGAGTATTTGGGTTACTTGTATTTT 58.825 33.333 0.00 0.00 30.15 1.82
860 861 9.092338 TGGGTTACTTGTATTTTGTAGTCTAGA 57.908 33.333 0.00 0.00 0.00 2.43
897 898 7.285858 TGTCTTTTACCTTATCTCTAGGAGAGC 59.714 40.741 3.65 0.00 42.26 4.09
902 903 6.025793 ACCTTATCTCTAGGAGAGCTTTCT 57.974 41.667 4.01 0.00 42.26 2.52
904 905 6.323739 ACCTTATCTCTAGGAGAGCTTTCTTG 59.676 42.308 4.01 0.00 42.26 3.02
906 907 7.233348 CCTTATCTCTAGGAGAGCTTTCTTGAT 59.767 40.741 4.01 0.00 42.26 2.57
910 911 6.321181 TCTCTAGGAGAGCTTTCTTGATCTTC 59.679 42.308 4.01 0.00 42.04 2.87
937 938 8.624367 AGTCTTGTACTCAATATATACTCGCT 57.376 34.615 0.00 0.00 30.33 4.93
938 939 9.069082 AGTCTTGTACTCAATATATACTCGCTT 57.931 33.333 0.00 0.00 30.33 4.68
945 947 7.897864 ACTCAATATATACTCGCTTTAGGCTT 58.102 34.615 0.00 0.00 39.13 4.35
976 978 4.836125 ATCCATCATATTCGGCAACAAC 57.164 40.909 0.00 0.00 0.00 3.32
1000 1002 4.586841 CCCTCTCTATCCCTTCTAACACTG 59.413 50.000 0.00 0.00 0.00 3.66
1054 1056 1.941294 AGACGCTCGATCACTATTCGT 59.059 47.619 0.00 0.00 37.82 3.85
1057 1059 1.663445 CGCTCGATCACTATTCGTCCC 60.663 57.143 0.00 0.00 37.82 4.46
1145 1147 0.899019 GGAGACGAAGGAGCTTTCCT 59.101 55.000 0.00 0.00 43.04 3.36
1208 1210 3.038417 GCGGGAGGATTCGATGCG 61.038 66.667 0.00 0.00 0.00 4.73
1231 1233 0.322008 CGCAGGGAAAGAAGAAGGCT 60.322 55.000 0.00 0.00 0.00 4.58
1350 4387 1.821216 GAGCCGTTTTCTTCCCATGA 58.179 50.000 0.00 0.00 0.00 3.07
1438 4754 1.332816 CGAAGCGATCTCGAGTCTCAG 60.333 57.143 13.13 8.32 43.02 3.35
1544 4860 3.976701 AACCATCTTGGCCGCCTCG 62.977 63.158 11.61 1.39 42.67 4.63
1570 4886 4.278956 GGCGACGGTTCTGATGTT 57.721 55.556 0.00 0.00 0.00 2.71
1643 4973 2.578369 CGCTCGTCGGTATTCAAGG 58.422 57.895 0.00 0.00 33.78 3.61
1644 4974 1.480219 CGCTCGTCGGTATTCAAGGC 61.480 60.000 0.00 0.00 33.78 4.35
1645 4975 1.480219 GCTCGTCGGTATTCAAGGCG 61.480 60.000 0.00 0.00 0.00 5.52
1646 4976 0.870307 CTCGTCGGTATTCAAGGCGG 60.870 60.000 0.00 0.00 0.00 6.13
1647 4977 1.140161 CGTCGGTATTCAAGGCGGA 59.860 57.895 0.00 0.00 0.00 5.54
1648 4978 0.870307 CGTCGGTATTCAAGGCGGAG 60.870 60.000 0.00 0.00 0.00 4.63
1706 5036 2.345641 GTCACATTGGAAGACATCGACG 59.654 50.000 0.00 0.00 32.68 5.12
1723 5053 1.216122 ACGCCGCAACGTTTAAAGTA 58.784 45.000 0.00 0.00 45.75 2.24
1754 5084 1.288127 GTCTACACCGACGCCTTGT 59.712 57.895 0.00 0.00 0.00 3.16
1881 5212 0.397941 CTGTGGGATGGTGTGACTGT 59.602 55.000 0.00 0.00 0.00 3.55
1882 5213 0.396435 TGTGGGATGGTGTGACTGTC 59.604 55.000 0.00 0.00 0.00 3.51
1905 5236 3.371168 ACAACGTTGCTGCAACTTTATG 58.629 40.909 34.44 27.89 41.62 1.90
2040 5371 8.624776 GGTTCAGAAGTTCCCATCTATTATTTG 58.375 37.037 0.00 0.00 0.00 2.32
2195 5528 2.982488 CCAGCCACTAAGGAAGGGATAT 59.018 50.000 0.00 0.00 41.22 1.63
2372 5707 6.933521 CCGATCTTCATCCTTAGTCAATGATT 59.066 38.462 0.00 0.00 30.03 2.57
2391 5726 4.635765 TGATTTCCACTGCTGCAATAGTAC 59.364 41.667 3.02 0.00 0.00 2.73
2529 5864 4.407365 CTCTTAGTCACCCCAACCAAAAT 58.593 43.478 0.00 0.00 0.00 1.82
2623 5958 1.680735 CAAACCAACTTAGCCAGCACA 59.319 47.619 0.00 0.00 0.00 4.57
2630 5965 2.862541 ACTTAGCCAGCACACAATTGA 58.137 42.857 13.59 0.00 0.00 2.57
2694 6032 4.247380 CTCCGAGCCTGGCCCATC 62.247 72.222 16.57 5.64 0.00 3.51
2835 6173 3.827302 CCACCGATAAGCCTAGAGTACAT 59.173 47.826 0.00 0.00 0.00 2.29
2880 6218 2.886382 CCGAATGAGGCCAAACCAT 58.114 52.632 5.01 0.00 43.14 3.55
2889 6227 1.004745 AGGCCAAACCATAGTGTCAGG 59.995 52.381 5.01 0.00 43.14 3.86
2897 6235 0.817654 CATAGTGTCAGGCGTCTCCA 59.182 55.000 0.00 0.00 37.29 3.86
3052 6390 5.121142 TGAAAATAGAACCGGAAAGCTAACG 59.879 40.000 9.46 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.376037 GGACGGTCTTCCAGCAAGG 60.376 63.158 8.23 0.00 35.49 3.61
1 2 0.250295 TTGGACGGTCTTCCAGCAAG 60.250 55.000 8.23 0.00 46.61 4.01
2 3 0.250295 CTTGGACGGTCTTCCAGCAA 60.250 55.000 8.23 1.96 46.61 3.91
3 4 1.371183 CTTGGACGGTCTTCCAGCA 59.629 57.895 8.23 0.00 46.61 4.41
4 5 0.951040 CACTTGGACGGTCTTCCAGC 60.951 60.000 8.23 0.00 46.61 4.85
5 6 0.679505 TCACTTGGACGGTCTTCCAG 59.320 55.000 8.23 2.07 46.61 3.86
6 7 1.348064 ATCACTTGGACGGTCTTCCA 58.652 50.000 8.23 0.00 44.39 3.53
7 8 2.474410 AATCACTTGGACGGTCTTCC 57.526 50.000 8.23 0.00 36.03 3.46
8 9 3.813529 CAAATCACTTGGACGGTCTTC 57.186 47.619 8.23 0.00 0.00 2.87
18 19 1.542915 CTCCCAGCACCAAATCACTTG 59.457 52.381 0.00 0.00 34.52 3.16
19 20 1.145738 ACTCCCAGCACCAAATCACTT 59.854 47.619 0.00 0.00 0.00 3.16
20 21 0.773644 ACTCCCAGCACCAAATCACT 59.226 50.000 0.00 0.00 0.00 3.41
21 22 0.883833 CACTCCCAGCACCAAATCAC 59.116 55.000 0.00 0.00 0.00 3.06
22 23 0.251297 CCACTCCCAGCACCAAATCA 60.251 55.000 0.00 0.00 0.00 2.57
23 24 0.967380 CCCACTCCCAGCACCAAATC 60.967 60.000 0.00 0.00 0.00 2.17
24 25 1.077265 CCCACTCCCAGCACCAAAT 59.923 57.895 0.00 0.00 0.00 2.32
25 26 2.520458 CCCACTCCCAGCACCAAA 59.480 61.111 0.00 0.00 0.00 3.28
26 27 3.579302 CCCCACTCCCAGCACCAA 61.579 66.667 0.00 0.00 0.00 3.67
27 28 4.918360 ACCCCACTCCCAGCACCA 62.918 66.667 0.00 0.00 0.00 4.17
28 29 4.351054 CACCCCACTCCCAGCACC 62.351 72.222 0.00 0.00 0.00 5.01
29 30 2.606587 ATCACCCCACTCCCAGCAC 61.607 63.158 0.00 0.00 0.00 4.40
30 31 2.204136 ATCACCCCACTCCCAGCA 60.204 61.111 0.00 0.00 0.00 4.41
31 32 2.273449 CATCACCCCACTCCCAGC 59.727 66.667 0.00 0.00 0.00 4.85
32 33 2.683465 CCCATCACCCCACTCCCAG 61.683 68.421 0.00 0.00 0.00 4.45
33 34 2.613696 CCCATCACCCCACTCCCA 60.614 66.667 0.00 0.00 0.00 4.37
34 35 4.129148 GCCCATCACCCCACTCCC 62.129 72.222 0.00 0.00 0.00 4.30
35 36 4.489771 CGCCCATCACCCCACTCC 62.490 72.222 0.00 0.00 0.00 3.85
36 37 3.391665 CTCGCCCATCACCCCACTC 62.392 68.421 0.00 0.00 0.00 3.51
37 38 3.402681 CTCGCCCATCACCCCACT 61.403 66.667 0.00 0.00 0.00 4.00
58 59 3.880846 GAAGATGCAAGGGCGCCG 61.881 66.667 22.54 8.08 45.35 6.46
59 60 2.439156 AGAAGATGCAAGGGCGCC 60.439 61.111 21.18 21.18 45.35 6.53
60 61 2.796651 CAGAAGATGCAAGGGCGC 59.203 61.111 0.00 0.00 45.35 6.53
69 70 2.381725 TCACAGAGCTGCAGAAGATG 57.618 50.000 20.43 12.20 0.00 2.90
70 71 2.907634 CATCACAGAGCTGCAGAAGAT 58.092 47.619 20.43 7.47 0.00 2.40
71 72 1.675116 GCATCACAGAGCTGCAGAAGA 60.675 52.381 20.43 5.30 39.15 2.87
72 73 0.727970 GCATCACAGAGCTGCAGAAG 59.272 55.000 20.43 5.72 39.15 2.85
73 74 0.323957 AGCATCACAGAGCTGCAGAA 59.676 50.000 20.43 0.00 41.73 3.02
74 75 1.980844 AGCATCACAGAGCTGCAGA 59.019 52.632 20.43 0.00 41.73 4.26
75 76 4.619852 AGCATCACAGAGCTGCAG 57.380 55.556 10.11 10.11 41.73 4.41
79 80 1.608154 ATGCCAGCATCACAGAGCT 59.392 52.632 0.00 0.00 42.94 4.09
80 81 4.237445 ATGCCAGCATCACAGAGC 57.763 55.556 0.00 0.00 29.42 4.09
88 89 3.292492 TTTGATCTCTGATGCCAGCAT 57.708 42.857 4.45 4.45 40.20 3.79
89 90 2.793288 TTTGATCTCTGATGCCAGCA 57.207 45.000 0.00 0.00 40.20 4.41
90 91 2.293677 CCATTTGATCTCTGATGCCAGC 59.706 50.000 0.00 0.00 40.20 4.85
91 92 2.293677 GCCATTTGATCTCTGATGCCAG 59.706 50.000 0.00 0.00 41.74 4.85
92 93 2.304092 GCCATTTGATCTCTGATGCCA 58.696 47.619 0.00 0.00 0.00 4.92
93 94 1.266175 CGCCATTTGATCTCTGATGCC 59.734 52.381 0.00 0.00 0.00 4.40
94 95 1.334779 GCGCCATTTGATCTCTGATGC 60.335 52.381 0.00 0.00 0.00 3.91
95 96 1.070108 CGCGCCATTTGATCTCTGATG 60.070 52.381 0.00 0.00 0.00 3.07
96 97 1.224075 CGCGCCATTTGATCTCTGAT 58.776 50.000 0.00 0.00 0.00 2.90
97 98 0.811219 CCGCGCCATTTGATCTCTGA 60.811 55.000 0.00 0.00 0.00 3.27
98 99 1.645455 CCGCGCCATTTGATCTCTG 59.355 57.895 0.00 0.00 0.00 3.35
99 100 2.182842 GCCGCGCCATTTGATCTCT 61.183 57.895 0.00 0.00 0.00 3.10
100 101 2.329339 GCCGCGCCATTTGATCTC 59.671 61.111 0.00 0.00 0.00 2.75
116 117 2.751837 CCGGAGAAGGCAAAGGGC 60.752 66.667 0.00 0.00 43.74 5.19
117 118 1.078143 CTCCGGAGAAGGCAAAGGG 60.078 63.158 28.21 0.00 0.00 3.95
118 119 1.746991 GCTCCGGAGAAGGCAAAGG 60.747 63.158 35.69 5.57 0.00 3.11
119 120 2.103042 CGCTCCGGAGAAGGCAAAG 61.103 63.158 35.69 6.40 0.00 2.77
120 121 2.047274 CGCTCCGGAGAAGGCAAA 60.047 61.111 35.69 0.00 0.00 3.68
121 122 4.760047 GCGCTCCGGAGAAGGCAA 62.760 66.667 35.69 0.00 0.00 4.52
140 141 2.359230 ACGCCTTGAGCTCCTTGC 60.359 61.111 12.15 9.71 40.39 4.01
141 142 1.743252 GGACGCCTTGAGCTCCTTG 60.743 63.158 12.15 0.00 40.39 3.61
142 143 2.177594 CTGGACGCCTTGAGCTCCTT 62.178 60.000 12.15 0.00 38.73 3.36
143 144 2.604686 TGGACGCCTTGAGCTCCT 60.605 61.111 12.15 0.00 38.73 3.69
144 145 2.125350 CTGGACGCCTTGAGCTCC 60.125 66.667 12.15 0.00 40.39 4.70
145 146 0.320771 TTTCTGGACGCCTTGAGCTC 60.321 55.000 6.82 6.82 40.39 4.09
146 147 0.326264 ATTTCTGGACGCCTTGAGCT 59.674 50.000 0.00 0.00 40.39 4.09
147 148 1.168714 AATTTCTGGACGCCTTGAGC 58.831 50.000 0.00 0.00 38.52 4.26
148 149 2.159653 CGAAATTTCTGGACGCCTTGAG 60.160 50.000 15.92 0.00 0.00 3.02
149 150 1.804151 CGAAATTTCTGGACGCCTTGA 59.196 47.619 15.92 0.00 0.00 3.02
150 151 1.135689 CCGAAATTTCTGGACGCCTTG 60.136 52.381 18.47 0.73 0.00 3.61
151 152 1.165270 CCGAAATTTCTGGACGCCTT 58.835 50.000 18.47 0.00 0.00 4.35
152 153 1.305930 GCCGAAATTTCTGGACGCCT 61.306 55.000 24.15 0.00 0.00 5.52
153 154 1.136774 GCCGAAATTTCTGGACGCC 59.863 57.895 24.15 9.53 0.00 5.68
154 155 1.136774 GGCCGAAATTTCTGGACGC 59.863 57.895 24.15 14.22 0.00 5.19
155 156 1.654023 GGGGCCGAAATTTCTGGACG 61.654 60.000 24.15 10.24 32.15 4.79
156 157 0.323451 AGGGGCCGAAATTTCTGGAC 60.323 55.000 24.15 22.25 0.00 4.02
157 158 0.034477 GAGGGGCCGAAATTTCTGGA 60.034 55.000 24.15 0.00 0.00 3.86
158 159 1.376609 CGAGGGGCCGAAATTTCTGG 61.377 60.000 15.92 17.58 0.00 3.86
159 160 1.376609 CCGAGGGGCCGAAATTTCTG 61.377 60.000 15.92 10.65 0.00 3.02
160 161 1.077716 CCGAGGGGCCGAAATTTCT 60.078 57.895 15.92 0.00 0.00 2.52
161 162 1.078001 TCCGAGGGGCCGAAATTTC 60.078 57.895 8.20 8.20 0.00 2.17
162 163 1.077716 CTCCGAGGGGCCGAAATTT 60.078 57.895 0.00 0.00 0.00 1.82
163 164 2.590092 CTCCGAGGGGCCGAAATT 59.410 61.111 0.00 0.00 0.00 1.82
164 165 3.480133 CCTCCGAGGGGCCGAAAT 61.480 66.667 6.53 0.00 0.00 2.17
174 175 2.203126 GCATCCTTGGCCTCCGAG 60.203 66.667 3.32 0.00 34.87 4.63
175 176 4.161295 CGCATCCTTGGCCTCCGA 62.161 66.667 3.32 0.00 0.00 4.55
176 177 4.161295 TCGCATCCTTGGCCTCCG 62.161 66.667 3.32 0.00 0.00 4.63
177 178 2.203126 CTCGCATCCTTGGCCTCC 60.203 66.667 3.32 0.00 0.00 4.30
178 179 2.203126 CCTCGCATCCTTGGCCTC 60.203 66.667 3.32 0.00 0.00 4.70
179 180 2.300967 TTCCTCGCATCCTTGGCCT 61.301 57.895 3.32 0.00 0.00 5.19
180 181 2.115291 GTTCCTCGCATCCTTGGCC 61.115 63.158 0.00 0.00 0.00 5.36
181 182 2.464459 CGTTCCTCGCATCCTTGGC 61.464 63.158 0.00 0.00 0.00 4.52
182 183 1.084370 GTCGTTCCTCGCATCCTTGG 61.084 60.000 0.00 0.00 39.67 3.61
183 184 1.413767 CGTCGTTCCTCGCATCCTTG 61.414 60.000 0.00 0.00 39.67 3.61
184 185 1.153823 CGTCGTTCCTCGCATCCTT 60.154 57.895 0.00 0.00 39.67 3.36
185 186 1.994507 CTCGTCGTTCCTCGCATCCT 61.995 60.000 0.00 0.00 39.67 3.24
186 187 1.586564 CTCGTCGTTCCTCGCATCC 60.587 63.158 0.00 0.00 39.67 3.51
187 188 1.134530 CACTCGTCGTTCCTCGCATC 61.135 60.000 0.00 0.00 39.67 3.91
188 189 1.154016 CACTCGTCGTTCCTCGCAT 60.154 57.895 0.00 0.00 39.67 4.73
189 190 2.254350 CACTCGTCGTTCCTCGCA 59.746 61.111 0.00 0.00 39.67 5.10
190 191 2.504244 CCACTCGTCGTTCCTCGC 60.504 66.667 0.00 0.00 39.67 5.03
191 192 2.504244 GCCACTCGTCGTTCCTCG 60.504 66.667 0.00 0.00 41.41 4.63
192 193 2.504244 CGCCACTCGTCGTTCCTC 60.504 66.667 0.00 0.00 0.00 3.71
193 194 4.719369 GCGCCACTCGTCGTTCCT 62.719 66.667 0.00 0.00 41.07 3.36
194 195 4.719369 AGCGCCACTCGTCGTTCC 62.719 66.667 2.29 0.00 41.07 3.62
195 196 3.173240 GAGCGCCACTCGTCGTTC 61.173 66.667 2.29 0.00 41.07 3.95
245 246 4.749310 AGCCTTCTGTCGCGCCAG 62.749 66.667 11.62 11.62 0.00 4.85
246 247 4.314440 AAGCCTTCTGTCGCGCCA 62.314 61.111 0.00 0.00 0.00 5.69
247 248 3.793144 CAAGCCTTCTGTCGCGCC 61.793 66.667 0.00 0.00 0.00 6.53
248 249 3.793144 CCAAGCCTTCTGTCGCGC 61.793 66.667 0.00 0.00 0.00 6.86
249 250 3.793144 GCCAAGCCTTCTGTCGCG 61.793 66.667 0.00 0.00 0.00 5.87
250 251 3.435186 GGCCAAGCCTTCTGTCGC 61.435 66.667 0.00 0.00 46.69 5.19
283 284 4.821589 GAGGTGCTTCGGAGGGCG 62.822 72.222 0.00 0.00 0.00 6.13
284 285 4.475135 GGAGGTGCTTCGGAGGGC 62.475 72.222 0.00 0.00 0.00 5.19
285 286 2.294078 AAGGAGGTGCTTCGGAGGG 61.294 63.158 0.00 0.00 0.00 4.30
286 287 1.078848 CAAGGAGGTGCTTCGGAGG 60.079 63.158 0.00 0.00 0.00 4.30
287 288 1.743252 GCAAGGAGGTGCTTCGGAG 60.743 63.158 0.00 0.00 41.51 4.63
288 289 2.347490 GCAAGGAGGTGCTTCGGA 59.653 61.111 0.00 0.00 41.51 4.55
289 290 3.121030 CGCAAGGAGGTGCTTCGG 61.121 66.667 0.00 0.00 42.62 4.30
329 330 4.379243 AGAGCGTGGCCTTGACCG 62.379 66.667 3.32 0.00 0.00 4.79
330 331 2.743928 CAGAGCGTGGCCTTGACC 60.744 66.667 3.32 0.00 0.00 4.02
331 332 2.029844 GTCAGAGCGTGGCCTTGAC 61.030 63.158 3.32 4.93 36.08 3.18
332 333 2.343758 GTCAGAGCGTGGCCTTGA 59.656 61.111 3.32 0.00 0.00 3.02
342 343 3.775654 CTCACCCCGGGTCAGAGC 61.776 72.222 21.85 0.00 31.02 4.09
343 344 3.077556 CCTCACCCCGGGTCAGAG 61.078 72.222 21.85 21.42 31.02 3.35
344 345 3.923645 ACCTCACCCCGGGTCAGA 61.924 66.667 21.85 13.07 31.02 3.27
345 346 3.706373 CACCTCACCCCGGGTCAG 61.706 72.222 21.85 2.35 31.02 3.51
346 347 3.556038 ATCACCTCACCCCGGGTCA 62.556 63.158 21.85 0.00 31.02 4.02
347 348 2.687566 ATCACCTCACCCCGGGTC 60.688 66.667 21.85 0.00 31.02 4.46
348 349 3.009115 CATCACCTCACCCCGGGT 61.009 66.667 21.85 2.03 35.62 5.28
349 350 3.797353 CCATCACCTCACCCCGGG 61.797 72.222 15.80 15.80 0.00 5.73
350 351 4.489771 GCCATCACCTCACCCCGG 62.490 72.222 0.00 0.00 0.00 5.73
351 352 4.838152 CGCCATCACCTCACCCCG 62.838 72.222 0.00 0.00 0.00 5.73
352 353 4.489771 CCGCCATCACCTCACCCC 62.490 72.222 0.00 0.00 0.00 4.95
390 391 4.719369 AAGTGCGGACGTCGAGGC 62.719 66.667 9.92 13.17 42.43 4.70
391 392 2.543687 ATCAAGTGCGGACGTCGAGG 62.544 60.000 9.92 3.03 42.43 4.63
392 393 1.154016 ATCAAGTGCGGACGTCGAG 60.154 57.895 9.92 7.39 42.43 4.04
393 394 1.443702 CATCAAGTGCGGACGTCGA 60.444 57.895 9.92 0.00 42.43 4.20
394 395 1.443702 TCATCAAGTGCGGACGTCG 60.444 57.895 9.92 6.26 42.76 5.12
395 396 1.674611 CGTCATCAAGTGCGGACGTC 61.675 60.000 7.13 7.13 45.73 4.34
396 397 1.733041 CGTCATCAAGTGCGGACGT 60.733 57.895 0.00 0.00 45.73 4.34
397 398 3.072598 CGTCATCAAGTGCGGACG 58.927 61.111 0.00 9.18 45.62 4.79
398 399 2.740714 GGCGTCATCAAGTGCGGAC 61.741 63.158 0.00 0.00 0.00 4.79
399 400 2.434185 GGCGTCATCAAGTGCGGA 60.434 61.111 0.00 0.00 0.00 5.54
400 401 3.853330 CGGCGTCATCAAGTGCGG 61.853 66.667 0.00 0.00 0.00 5.69
401 402 2.167219 ATCGGCGTCATCAAGTGCG 61.167 57.895 6.85 0.00 0.00 5.34
402 403 1.349627 CATCGGCGTCATCAAGTGC 59.650 57.895 6.85 0.00 0.00 4.40
403 404 1.078709 AACATCGGCGTCATCAAGTG 58.921 50.000 6.85 0.00 0.00 3.16
404 405 1.078709 CAACATCGGCGTCATCAAGT 58.921 50.000 6.85 0.00 0.00 3.16
405 406 1.061131 GTCAACATCGGCGTCATCAAG 59.939 52.381 6.85 0.00 0.00 3.02
406 407 1.075542 GTCAACATCGGCGTCATCAA 58.924 50.000 6.85 0.00 0.00 2.57
407 408 0.739462 GGTCAACATCGGCGTCATCA 60.739 55.000 6.85 0.00 0.00 3.07
408 409 0.460284 AGGTCAACATCGGCGTCATC 60.460 55.000 6.85 0.00 0.00 2.92
409 410 0.460284 GAGGTCAACATCGGCGTCAT 60.460 55.000 6.85 0.00 0.00 3.06
410 411 1.080093 GAGGTCAACATCGGCGTCA 60.080 57.895 6.85 0.00 0.00 4.35
411 412 2.158959 CGAGGTCAACATCGGCGTC 61.159 63.158 6.85 0.00 45.11 5.19
412 413 2.126071 CGAGGTCAACATCGGCGT 60.126 61.111 6.85 0.00 45.11 5.68
417 418 1.153628 CGGGGTCGAGGTCAACATC 60.154 63.158 0.00 0.00 39.00 3.06
418 419 2.656069 CCGGGGTCGAGGTCAACAT 61.656 63.158 0.00 0.00 39.00 2.71
419 420 3.307906 CCGGGGTCGAGGTCAACA 61.308 66.667 0.00 0.00 39.00 3.33
420 421 2.993264 TCCGGGGTCGAGGTCAAC 60.993 66.667 0.00 0.00 39.00 3.18
421 422 2.993264 GTCCGGGGTCGAGGTCAA 60.993 66.667 0.00 0.00 39.00 3.18
423 424 3.976701 TACGTCCGGGGTCGAGGTC 62.977 68.421 17.99 0.00 39.00 3.85
424 425 3.984193 CTACGTCCGGGGTCGAGGT 62.984 68.421 17.99 6.21 39.00 3.85
425 426 3.207669 CTACGTCCGGGGTCGAGG 61.208 72.222 17.99 0.50 39.00 4.63
426 427 3.207669 CCTACGTCCGGGGTCGAG 61.208 72.222 17.99 11.68 39.00 4.04
438 439 2.788172 CTATCTCGCTGCCGCCTACG 62.788 65.000 0.00 0.00 39.67 3.51
439 440 1.081108 CTATCTCGCTGCCGCCTAC 60.081 63.158 0.00 0.00 0.00 3.18
440 441 0.609406 ATCTATCTCGCTGCCGCCTA 60.609 55.000 0.00 0.00 0.00 3.93
441 442 1.872197 GATCTATCTCGCTGCCGCCT 61.872 60.000 0.00 0.00 0.00 5.52
442 443 1.445238 GATCTATCTCGCTGCCGCC 60.445 63.158 0.00 0.00 0.00 6.13
443 444 1.799519 CGATCTATCTCGCTGCCGC 60.800 63.158 0.00 0.00 0.00 6.53
444 445 4.449158 CGATCTATCTCGCTGCCG 57.551 61.111 0.00 0.00 0.00 5.69
450 451 3.497118 GGATCTTGTGCGATCTATCTCG 58.503 50.000 0.00 0.00 39.73 4.04
451 452 3.497118 CGGATCTTGTGCGATCTATCTC 58.503 50.000 0.00 0.00 45.38 2.75
452 453 2.230025 CCGGATCTTGTGCGATCTATCT 59.770 50.000 0.00 0.00 45.38 1.98
453 454 2.600731 CCGGATCTTGTGCGATCTATC 58.399 52.381 0.00 0.00 45.38 2.08
454 455 1.273606 CCCGGATCTTGTGCGATCTAT 59.726 52.381 0.73 0.00 45.38 1.98
455 456 0.673985 CCCGGATCTTGTGCGATCTA 59.326 55.000 0.73 0.00 45.38 1.98
456 457 1.043116 TCCCGGATCTTGTGCGATCT 61.043 55.000 0.73 0.00 45.38 2.75
457 458 0.598680 CTCCCGGATCTTGTGCGATC 60.599 60.000 0.73 0.00 45.38 3.69
458 459 1.443407 CTCCCGGATCTTGTGCGAT 59.557 57.895 0.73 0.00 45.38 4.58
459 460 2.721167 CCTCCCGGATCTTGTGCGA 61.721 63.158 0.73 0.00 45.38 5.10
460 461 2.202932 CCTCCCGGATCTTGTGCG 60.203 66.667 0.73 0.00 41.82 5.34
461 462 1.153349 GACCTCCCGGATCTTGTGC 60.153 63.158 0.73 0.00 0.00 4.57
462 463 0.833287 ATGACCTCCCGGATCTTGTG 59.167 55.000 0.73 0.00 0.00 3.33
463 464 1.123928 GATGACCTCCCGGATCTTGT 58.876 55.000 0.73 0.00 0.00 3.16
464 465 0.032678 CGATGACCTCCCGGATCTTG 59.967 60.000 0.73 0.00 0.00 3.02
465 466 1.115930 CCGATGACCTCCCGGATCTT 61.116 60.000 0.73 0.00 45.58 2.40
466 467 1.531840 CCGATGACCTCCCGGATCT 60.532 63.158 0.73 0.00 45.58 2.75
467 468 3.052081 CCGATGACCTCCCGGATC 58.948 66.667 0.73 0.00 45.58 3.36
468 469 3.234730 GCCGATGACCTCCCGGAT 61.235 66.667 0.73 0.00 45.58 4.18
474 475 2.894240 TAAACGCCGCCGATGACCTC 62.894 60.000 0.00 0.00 38.29 3.85
475 476 3.009192 TAAACGCCGCCGATGACCT 62.009 57.895 0.00 0.00 38.29 3.85
476 477 2.509786 TAAACGCCGCCGATGACC 60.510 61.111 0.00 0.00 38.29 4.02
477 478 1.749609 GAGTAAACGCCGCCGATGAC 61.750 60.000 0.00 0.00 38.29 3.06
478 479 1.517694 GAGTAAACGCCGCCGATGA 60.518 57.895 0.00 0.00 38.29 2.92
479 480 2.856346 CGAGTAAACGCCGCCGATG 61.856 63.158 0.00 0.00 38.29 3.84
480 481 2.581409 CGAGTAAACGCCGCCGAT 60.581 61.111 0.00 0.00 38.29 4.18
481 482 3.672255 CTCGAGTAAACGCCGCCGA 62.672 63.158 3.62 0.00 38.29 5.54
482 483 3.245315 CTCGAGTAAACGCCGCCG 61.245 66.667 3.62 0.00 41.14 6.46
483 484 2.884207 CCTCGAGTAAACGCCGCC 60.884 66.667 12.31 0.00 0.00 6.13
484 485 2.884207 CCCTCGAGTAAACGCCGC 60.884 66.667 12.31 0.00 0.00 6.53
485 486 2.202703 CCCCTCGAGTAAACGCCG 60.203 66.667 12.31 0.00 0.00 6.46
486 487 1.141234 CTCCCCTCGAGTAAACGCC 59.859 63.158 12.31 0.00 33.51 5.68
487 488 1.141234 CCTCCCCTCGAGTAAACGC 59.859 63.158 12.31 0.00 36.82 4.84
488 489 1.673808 CCCCTCCCCTCGAGTAAACG 61.674 65.000 12.31 0.00 36.82 3.60
489 490 0.325016 TCCCCTCCCCTCGAGTAAAC 60.325 60.000 12.31 0.00 36.82 2.01
490 491 0.640495 ATCCCCTCCCCTCGAGTAAA 59.360 55.000 12.31 0.00 36.82 2.01
491 492 0.187851 GATCCCCTCCCCTCGAGTAA 59.812 60.000 12.31 0.00 36.82 2.24
492 493 1.851987 GATCCCCTCCCCTCGAGTA 59.148 63.158 12.31 0.00 36.82 2.59
493 494 2.609920 GATCCCCTCCCCTCGAGT 59.390 66.667 12.31 0.00 36.82 4.18
494 495 2.598985 CGATCCCCTCCCCTCGAG 60.599 72.222 5.13 5.13 38.46 4.04
495 496 4.916314 GCGATCCCCTCCCCTCGA 62.916 72.222 0.00 0.00 33.07 4.04
497 498 3.551407 GTGCGATCCCCTCCCCTC 61.551 72.222 0.00 0.00 0.00 4.30
500 501 4.222847 GTCGTGCGATCCCCTCCC 62.223 72.222 0.00 0.00 0.00 4.30
501 502 4.570663 CGTCGTGCGATCCCCTCC 62.571 72.222 0.00 0.00 44.77 4.30
502 503 4.570663 CCGTCGTGCGATCCCCTC 62.571 72.222 0.00 0.00 44.77 4.30
512 513 1.565156 TAAAAGCAGCTGCCGTCGTG 61.565 55.000 34.39 0.00 43.38 4.35
513 514 1.291877 CTAAAAGCAGCTGCCGTCGT 61.292 55.000 34.39 17.73 43.38 4.34
514 515 1.291877 ACTAAAAGCAGCTGCCGTCG 61.292 55.000 34.39 20.71 43.38 5.12
515 516 0.444260 GACTAAAAGCAGCTGCCGTC 59.556 55.000 34.39 25.44 43.38 4.79
516 517 0.250295 TGACTAAAAGCAGCTGCCGT 60.250 50.000 34.39 22.24 43.38 5.68
517 518 0.874390 TTGACTAAAAGCAGCTGCCG 59.126 50.000 34.39 19.34 43.38 5.69
518 519 1.200948 CCTTGACTAAAAGCAGCTGCC 59.799 52.381 34.39 17.79 43.38 4.85
519 520 1.200948 CCCTTGACTAAAAGCAGCTGC 59.799 52.381 31.53 31.53 42.49 5.25
520 521 1.815003 CCCCTTGACTAAAAGCAGCTG 59.185 52.381 10.11 10.11 0.00 4.24
521 522 1.705186 TCCCCTTGACTAAAAGCAGCT 59.295 47.619 0.00 0.00 0.00 4.24
522 523 2.200373 TCCCCTTGACTAAAAGCAGC 57.800 50.000 0.00 0.00 0.00 5.25
523 524 2.939103 CGATCCCCTTGACTAAAAGCAG 59.061 50.000 0.00 0.00 0.00 4.24
524 525 2.355716 CCGATCCCCTTGACTAAAAGCA 60.356 50.000 0.00 0.00 0.00 3.91
525 526 2.289565 CCGATCCCCTTGACTAAAAGC 58.710 52.381 0.00 0.00 0.00 3.51
526 527 2.504175 TCCCGATCCCCTTGACTAAAAG 59.496 50.000 0.00 0.00 0.00 2.27
527 528 2.553464 TCCCGATCCCCTTGACTAAAA 58.447 47.619 0.00 0.00 0.00 1.52
528 529 2.257391 TCCCGATCCCCTTGACTAAA 57.743 50.000 0.00 0.00 0.00 1.85
529 530 2.326428 GATCCCGATCCCCTTGACTAA 58.674 52.381 0.00 0.00 31.76 2.24
530 531 1.822062 CGATCCCGATCCCCTTGACTA 60.822 57.143 0.00 0.00 38.22 2.59
531 532 1.115930 CGATCCCGATCCCCTTGACT 61.116 60.000 0.00 0.00 38.22 3.41
532 533 1.367840 CGATCCCGATCCCCTTGAC 59.632 63.158 0.00 0.00 38.22 3.18
533 534 2.507854 GCGATCCCGATCCCCTTGA 61.508 63.158 0.00 0.00 38.22 3.02
534 535 2.031163 GCGATCCCGATCCCCTTG 59.969 66.667 0.00 0.00 38.22 3.61
535 536 2.445845 TGCGATCCCGATCCCCTT 60.446 61.111 0.00 0.00 38.22 3.95
536 537 3.234730 GTGCGATCCCGATCCCCT 61.235 66.667 0.00 0.00 38.22 4.79
537 538 4.664677 CGTGCGATCCCGATCCCC 62.665 72.222 0.00 0.00 38.22 4.81
538 539 3.559657 CTCGTGCGATCCCGATCCC 62.560 68.421 0.00 0.00 38.22 3.85
539 540 2.049985 CTCGTGCGATCCCGATCC 60.050 66.667 0.00 0.00 38.22 3.36
540 541 2.049985 CCTCGTGCGATCCCGATC 60.050 66.667 0.00 0.00 38.22 3.69
541 542 3.606662 CCCTCGTGCGATCCCGAT 61.607 66.667 0.00 0.00 38.22 4.18
544 545 4.899239 CTGCCCTCGTGCGATCCC 62.899 72.222 0.00 0.00 0.00 3.85
554 555 3.195698 CTAAACGCCGCTGCCCTC 61.196 66.667 0.00 0.00 0.00 4.30
555 556 3.952628 GACTAAACGCCGCTGCCCT 62.953 63.158 0.00 0.00 0.00 5.19
556 557 3.497031 GACTAAACGCCGCTGCCC 61.497 66.667 0.00 0.00 0.00 5.36
557 558 3.849953 CGACTAAACGCCGCTGCC 61.850 66.667 0.00 0.00 0.00 4.85
558 559 2.789203 CTCGACTAAACGCCGCTGC 61.789 63.158 0.00 0.00 0.00 5.25
559 560 2.158959 CCTCGACTAAACGCCGCTG 61.159 63.158 0.00 0.00 0.00 5.18
560 561 2.181021 CCTCGACTAAACGCCGCT 59.819 61.111 0.00 0.00 0.00 5.52
561 562 2.884207 CCCTCGACTAAACGCCGC 60.884 66.667 0.00 0.00 0.00 6.53
562 563 2.012902 ATCCCCTCGACTAAACGCCG 62.013 60.000 0.00 0.00 0.00 6.46
563 564 0.249363 GATCCCCTCGACTAAACGCC 60.249 60.000 0.00 0.00 0.00 5.68
564 565 3.269520 GATCCCCTCGACTAAACGC 57.730 57.895 0.00 0.00 0.00 4.84
574 575 2.203714 CTCCTCCCCGATCCCCTC 60.204 72.222 0.00 0.00 0.00 4.30
575 576 4.565850 GCTCCTCCCCGATCCCCT 62.566 72.222 0.00 0.00 0.00 4.79
576 577 4.880426 TGCTCCTCCCCGATCCCC 62.880 72.222 0.00 0.00 0.00 4.81
577 578 3.551407 GTGCTCCTCCCCGATCCC 61.551 72.222 0.00 0.00 0.00 3.85
578 579 2.444895 AGTGCTCCTCCCCGATCC 60.445 66.667 0.00 0.00 0.00 3.36
579 580 1.617947 AACAGTGCTCCTCCCCGATC 61.618 60.000 0.00 0.00 0.00 3.69
580 581 1.201429 AAACAGTGCTCCTCCCCGAT 61.201 55.000 0.00 0.00 0.00 4.18
581 582 1.827399 GAAACAGTGCTCCTCCCCGA 61.827 60.000 0.00 0.00 0.00 5.14
582 583 1.376037 GAAACAGTGCTCCTCCCCG 60.376 63.158 0.00 0.00 0.00 5.73
583 584 1.376037 CGAAACAGTGCTCCTCCCC 60.376 63.158 0.00 0.00 0.00 4.81
584 585 0.951040 CACGAAACAGTGCTCCTCCC 60.951 60.000 0.00 0.00 35.17 4.30
585 586 2.533318 CACGAAACAGTGCTCCTCC 58.467 57.895 0.00 0.00 35.17 4.30
592 593 2.972505 AGCCCGCACGAAACAGTG 60.973 61.111 0.00 0.00 44.47 3.66
593 594 2.972505 CAGCCCGCACGAAACAGT 60.973 61.111 0.00 0.00 0.00 3.55
594 595 3.726517 CCAGCCCGCACGAAACAG 61.727 66.667 0.00 0.00 0.00 3.16
597 598 4.572571 AACCCAGCCCGCACGAAA 62.573 61.111 0.00 0.00 0.00 3.46
598 599 4.572571 AAACCCAGCCCGCACGAA 62.573 61.111 0.00 0.00 0.00 3.85
599 600 4.572571 AAAACCCAGCCCGCACGA 62.573 61.111 0.00 0.00 0.00 4.35
600 601 3.601685 AAAAACCCAGCCCGCACG 61.602 61.111 0.00 0.00 0.00 5.34
614 615 1.649815 CCCACGCACGCACTAAAAA 59.350 52.632 0.00 0.00 0.00 1.94
615 616 2.255172 CCCCACGCACGCACTAAAA 61.255 57.895 0.00 0.00 0.00 1.52
616 617 2.666862 CCCCACGCACGCACTAAA 60.667 61.111 0.00 0.00 0.00 1.85
617 618 4.690719 CCCCCACGCACGCACTAA 62.691 66.667 0.00 0.00 0.00 2.24
642 643 3.076079 TGGTTAATTTTCGTCTCCCCC 57.924 47.619 0.00 0.00 0.00 5.40
643 644 3.120095 CGTTGGTTAATTTTCGTCTCCCC 60.120 47.826 0.00 0.00 0.00 4.81
644 645 3.747529 TCGTTGGTTAATTTTCGTCTCCC 59.252 43.478 0.00 0.00 0.00 4.30
645 646 4.996062 TCGTTGGTTAATTTTCGTCTCC 57.004 40.909 0.00 0.00 0.00 3.71
646 647 7.667984 TTTTTCGTTGGTTAATTTTCGTCTC 57.332 32.000 0.00 0.00 0.00 3.36
669 670 2.496111 TGAATAGTCACCGCGGTTTTT 58.504 42.857 32.11 18.92 0.00 1.94
670 671 2.172851 TGAATAGTCACCGCGGTTTT 57.827 45.000 32.11 19.31 0.00 2.43
671 672 2.277084 GATGAATAGTCACCGCGGTTT 58.723 47.619 32.11 20.98 36.31 3.27
672 673 1.206132 TGATGAATAGTCACCGCGGTT 59.794 47.619 32.11 18.20 36.31 4.44
673 674 0.821517 TGATGAATAGTCACCGCGGT 59.178 50.000 28.70 28.70 36.31 5.68
674 675 1.593006 GTTGATGAATAGTCACCGCGG 59.407 52.381 26.86 26.86 36.31 6.46
675 676 2.282555 CAGTTGATGAATAGTCACCGCG 59.717 50.000 0.00 0.00 36.31 6.46
676 677 3.521560 TCAGTTGATGAATAGTCACCGC 58.478 45.455 0.00 0.00 36.31 5.68
688 689 9.265901 CCTATACTCCTAATGTTTCAGTTGATG 57.734 37.037 0.00 0.00 0.00 3.07
689 690 8.993424 ACCTATACTCCTAATGTTTCAGTTGAT 58.007 33.333 0.00 0.00 0.00 2.57
690 691 8.375493 ACCTATACTCCTAATGTTTCAGTTGA 57.625 34.615 0.00 0.00 0.00 3.18
691 692 9.530633 GTACCTATACTCCTAATGTTTCAGTTG 57.469 37.037 0.00 0.00 0.00 3.16
692 693 9.490083 AGTACCTATACTCCTAATGTTTCAGTT 57.510 33.333 0.00 0.00 36.97 3.16
713 714 0.967380 TTTCGGACGGAGGGAGTACC 60.967 60.000 0.00 0.00 40.67 3.34
714 715 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
715 716 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
716 717 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
717 718 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
718 719 1.753073 GAGTATTTTCGGACGGAGGGA 59.247 52.381 0.00 0.00 0.00 4.20
719 720 1.535437 CGAGTATTTTCGGACGGAGGG 60.535 57.143 0.00 0.00 36.95 4.30
720 721 1.133790 ACGAGTATTTTCGGACGGAGG 59.866 52.381 0.00 0.00 44.57 4.30
721 722 2.448219 GACGAGTATTTTCGGACGGAG 58.552 52.381 0.00 0.00 44.57 4.63
722 723 1.202065 CGACGAGTATTTTCGGACGGA 60.202 52.381 0.00 0.00 44.57 4.69
723 724 1.186030 CGACGAGTATTTTCGGACGG 58.814 55.000 0.00 0.00 44.57 4.79
724 725 2.163826 TCGACGAGTATTTTCGGACG 57.836 50.000 0.00 5.83 44.57 4.79
725 726 2.850647 CCTTCGACGAGTATTTTCGGAC 59.149 50.000 0.00 0.00 44.57 4.79
726 727 2.749076 TCCTTCGACGAGTATTTTCGGA 59.251 45.455 0.00 0.00 44.57 4.55
727 728 3.141002 TCCTTCGACGAGTATTTTCGG 57.859 47.619 0.00 0.00 44.57 4.30
728 729 4.796830 TCATTCCTTCGACGAGTATTTTCG 59.203 41.667 0.00 0.00 45.70 3.46
729 730 6.642683 TTCATTCCTTCGACGAGTATTTTC 57.357 37.500 0.00 0.00 0.00 2.29
730 731 6.594159 ACATTCATTCCTTCGACGAGTATTTT 59.406 34.615 0.00 0.00 0.00 1.82
731 732 6.106673 ACATTCATTCCTTCGACGAGTATTT 58.893 36.000 0.00 0.00 0.00 1.40
732 733 5.661458 ACATTCATTCCTTCGACGAGTATT 58.339 37.500 0.00 0.00 0.00 1.89
733 734 5.263968 ACATTCATTCCTTCGACGAGTAT 57.736 39.130 0.00 0.00 0.00 2.12
734 735 4.713824 ACATTCATTCCTTCGACGAGTA 57.286 40.909 0.00 0.00 0.00 2.59
735 736 3.594603 ACATTCATTCCTTCGACGAGT 57.405 42.857 0.00 0.00 0.00 4.18
736 737 5.524284 AGATACATTCATTCCTTCGACGAG 58.476 41.667 0.00 0.00 0.00 4.18
737 738 5.515797 AGATACATTCATTCCTTCGACGA 57.484 39.130 0.00 0.00 0.00 4.20
738 739 6.669278 TCTAGATACATTCATTCCTTCGACG 58.331 40.000 0.00 0.00 0.00 5.12
739 740 7.087639 CCTCTAGATACATTCATTCCTTCGAC 58.912 42.308 0.00 0.00 0.00 4.20
740 741 6.778069 ACCTCTAGATACATTCATTCCTTCGA 59.222 38.462 0.00 0.00 0.00 3.71
741 742 6.987386 ACCTCTAGATACATTCATTCCTTCG 58.013 40.000 0.00 0.00 0.00 3.79
792 793 8.826710 CGGAAATACTTGTTAGAGAAATGCATA 58.173 33.333 0.00 0.00 0.00 3.14
793 794 7.201732 CCGGAAATACTTGTTAGAGAAATGCAT 60.202 37.037 0.00 0.00 0.00 3.96
794 795 6.093495 CCGGAAATACTTGTTAGAGAAATGCA 59.907 38.462 0.00 0.00 0.00 3.96
795 796 6.315393 TCCGGAAATACTTGTTAGAGAAATGC 59.685 38.462 0.00 0.00 0.00 3.56
796 797 7.464178 CGTCCGGAAATACTTGTTAGAGAAATG 60.464 40.741 5.23 0.00 0.00 2.32
797 798 6.534079 CGTCCGGAAATACTTGTTAGAGAAAT 59.466 38.462 5.23 0.00 0.00 2.17
798 799 5.865552 CGTCCGGAAATACTTGTTAGAGAAA 59.134 40.000 5.23 0.00 0.00 2.52
799 800 5.404946 CGTCCGGAAATACTTGTTAGAGAA 58.595 41.667 5.23 0.00 0.00 2.87
800 801 4.142315 CCGTCCGGAAATACTTGTTAGAGA 60.142 45.833 5.23 0.00 37.50 3.10
801 802 4.110482 CCGTCCGGAAATACTTGTTAGAG 58.890 47.826 5.23 0.00 37.50 2.43
802 803 3.763360 TCCGTCCGGAAATACTTGTTAGA 59.237 43.478 5.23 0.00 42.05 2.10
803 804 4.110482 CTCCGTCCGGAAATACTTGTTAG 58.890 47.826 5.23 0.00 44.66 2.34
804 805 3.119029 CCTCCGTCCGGAAATACTTGTTA 60.119 47.826 5.23 0.00 44.66 2.41
805 806 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
806 807 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
807 808 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
808 809 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
809 810 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
810 811 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
811 812 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
812 813 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
813 814 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
814 815 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
815 816 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
816 817 0.104304 CAAATACTCCCTCCGTCCGG 59.896 60.000 0.00 0.00 0.00 5.14
817 818 0.104304 CCAAATACTCCCTCCGTCCG 59.896 60.000 0.00 0.00 0.00 4.79
818 819 0.468648 CCCAAATACTCCCTCCGTCC 59.531 60.000 0.00 0.00 0.00 4.79
819 820 1.201424 ACCCAAATACTCCCTCCGTC 58.799 55.000 0.00 0.00 0.00 4.79
820 821 1.665137 AACCCAAATACTCCCTCCGT 58.335 50.000 0.00 0.00 0.00 4.69
821 822 2.770232 AGTAACCCAAATACTCCCTCCG 59.230 50.000 0.00 0.00 0.00 4.63
822 823 4.018688 ACAAGTAACCCAAATACTCCCTCC 60.019 45.833 0.00 0.00 32.54 4.30
823 824 5.175388 ACAAGTAACCCAAATACTCCCTC 57.825 43.478 0.00 0.00 32.54 4.30
824 825 6.903340 ATACAAGTAACCCAAATACTCCCT 57.097 37.500 0.00 0.00 32.54 4.20
825 826 7.949690 AAATACAAGTAACCCAAATACTCCC 57.050 36.000 0.00 0.00 32.54 4.30
826 827 8.799367 ACAAAATACAAGTAACCCAAATACTCC 58.201 33.333 0.00 0.00 32.54 3.85
871 872 7.285858 GCTCTCCTAGAGATAAGGTAAAAGACA 59.714 40.741 8.11 0.00 45.07 3.41
876 877 8.062536 AGAAAGCTCTCCTAGAGATAAGGTAAA 58.937 37.037 8.11 0.00 40.58 2.01
888 889 6.219417 TGAAGATCAAGAAAGCTCTCCTAG 57.781 41.667 0.00 0.00 0.00 3.02
889 890 6.611613 TTGAAGATCAAGAAAGCTCTCCTA 57.388 37.500 0.00 0.00 31.83 2.94
910 911 9.119329 GCGAGTATATATTGAGTACAAGACTTG 57.881 37.037 13.77 13.77 39.06 3.16
945 947 9.898152 TGCCGAATATGATGGATTGTATTATTA 57.102 29.630 0.00 0.00 0.00 0.98
951 953 5.372373 TGTTGCCGAATATGATGGATTGTA 58.628 37.500 0.00 0.00 0.00 2.41
968 970 1.134068 GGATAGAGAGGGGTTGTTGCC 60.134 57.143 0.00 0.00 0.00 4.52
969 971 1.134068 GGGATAGAGAGGGGTTGTTGC 60.134 57.143 0.00 0.00 0.00 4.17
976 978 3.898741 GTGTTAGAAGGGATAGAGAGGGG 59.101 52.174 0.00 0.00 0.00 4.79
1000 1002 3.709653 TCCCAATCCCGGTCTATATATGC 59.290 47.826 0.00 0.00 0.00 3.14
1054 1056 3.769189 TGTACTACTCCTTGGATGGGA 57.231 47.619 0.00 0.00 0.00 4.37
1057 1059 3.134623 TGGCATGTACTACTCCTTGGATG 59.865 47.826 0.00 0.00 0.00 3.51
1145 1147 4.124351 GTGGACGATGTCGCCGGA 62.124 66.667 5.05 0.00 44.43 5.14
1193 1195 1.301009 GGTCGCATCGAATCCTCCC 60.301 63.158 0.00 0.00 37.72 4.30
1208 1210 0.036306 TTCTTCTTTCCCTGCGGGTC 59.964 55.000 11.58 0.00 44.74 4.46
1231 1233 1.292223 GTACTCGCCCTGCTTGTCA 59.708 57.895 0.00 0.00 0.00 3.58
1384 4421 2.359975 CACCCCCAGGCTTCGAAC 60.360 66.667 0.00 0.00 36.11 3.95
1468 4784 0.669625 GCACGACTACAACTCCCCAC 60.670 60.000 0.00 0.00 0.00 4.61
1631 4947 1.143183 GCTCCGCCTTGAATACCGA 59.857 57.895 0.00 0.00 0.00 4.69
1635 4965 2.006888 CGAAAAGCTCCGCCTTGAATA 58.993 47.619 0.00 0.00 0.00 1.75
1636 4966 0.804989 CGAAAAGCTCCGCCTTGAAT 59.195 50.000 0.00 0.00 0.00 2.57
1637 4967 1.234615 CCGAAAAGCTCCGCCTTGAA 61.235 55.000 0.00 0.00 0.00 2.69
1638 4968 1.671054 CCGAAAAGCTCCGCCTTGA 60.671 57.895 0.00 0.00 0.00 3.02
1639 4969 2.870372 CCGAAAAGCTCCGCCTTG 59.130 61.111 0.00 0.00 0.00 3.61
1640 4970 3.056328 GCCGAAAAGCTCCGCCTT 61.056 61.111 0.00 0.00 0.00 4.35
1641 4971 4.021925 AGCCGAAAAGCTCCGCCT 62.022 61.111 0.00 0.00 39.48 5.52
1648 4978 2.491621 GCCATGGAGCCGAAAAGC 59.508 61.111 18.40 0.00 0.00 3.51
1651 4981 3.711814 TCCGCCATGGAGCCGAAA 61.712 61.111 18.40 0.00 43.74 3.46
1706 5036 4.469552 AGAAATACTTTAAACGTTGCGGC 58.530 39.130 0.00 0.00 0.00 6.53
1723 5053 3.582780 GGTGTAGACGAACCGAAGAAAT 58.417 45.455 0.00 0.00 0.00 2.17
1754 5084 2.180862 CGAGCTCGTCATCTCCGGA 61.181 63.158 27.79 2.93 34.11 5.14
1881 5212 1.350319 GTTGCAGCAACGTTGTCGA 59.650 52.632 27.78 14.79 40.62 4.20
1882 5213 3.888221 GTTGCAGCAACGTTGTCG 58.112 55.556 27.78 19.78 43.34 4.35
1929 5260 2.098614 TGCACTTGTTTTTCAGCTCCA 58.901 42.857 0.00 0.00 0.00 3.86
2094 5425 4.683334 GTTTGGTGACGCTGCCGC 62.683 66.667 0.00 0.00 38.22 6.53
2372 5707 3.244387 TGTGTACTATTGCAGCAGTGGAA 60.244 43.478 8.34 0.00 38.53 3.53
2391 5726 6.643360 TGCTGATGTTCTTTTCAAATCATGTG 59.357 34.615 0.00 0.00 0.00 3.21
2529 5864 4.573201 CCGATATTCGAAACCTAGCCAAAA 59.427 41.667 0.00 0.00 43.74 2.44
2694 6032 3.031812 GCTGATCAGATTAAAAAGCGCG 58.968 45.455 27.04 0.00 0.00 6.86
2835 6173 5.183713 TCTGGTAGATTTTCGGTTAAGTCGA 59.816 40.000 0.00 0.00 34.62 4.20
2880 6218 0.888619 CTTGGAGACGCCTGACACTA 59.111 55.000 0.00 0.00 37.63 2.74
2889 6227 2.811317 CCGTGCTCTTGGAGACGC 60.811 66.667 0.00 0.00 34.50 5.19
2897 6235 4.394712 CCGCTTCCCCGTGCTCTT 62.395 66.667 0.00 0.00 0.00 2.85
3013 6351 8.523658 GTTCTATTTTCATATTGCCCTAATCCC 58.476 37.037 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.