Multiple sequence alignment - TraesCS7B01G151400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G151400 chr7B 100.000 2286 0 0 693 2978 201261554 201259269 0.000000e+00 4222.0
1 TraesCS7B01G151400 chr7B 100.000 490 0 0 1 490 201262246 201261757 0.000000e+00 905.0
2 TraesCS7B01G151400 chr7D 95.930 2236 57 11 752 2978 230380196 230377986 0.000000e+00 3594.0
3 TraesCS7B01G151400 chr7D 92.188 64 5 0 693 756 230380304 230380241 1.140000e-14 91.6
4 TraesCS7B01G151400 chr7A 94.965 1569 63 3 752 2309 242948709 242947146 0.000000e+00 2446.0
5 TraesCS7B01G151400 chr7A 97.556 491 9 1 1 488 212146375 212145885 0.000000e+00 837.0
6 TraesCS7B01G151400 chr7A 91.069 627 30 4 2374 2978 242947145 242946523 0.000000e+00 824.0
7 TraesCS7B01G151400 chr7A 92.308 104 8 0 387 490 212146709 212146812 6.650000e-32 148.0
8 TraesCS7B01G151400 chr5A 97.972 493 7 1 1 490 429218579 429218087 0.000000e+00 852.0
9 TraesCS7B01G151400 chr5A 93.269 104 7 0 387 490 429218913 429219016 1.430000e-33 154.0
10 TraesCS7B01G151400 chr1B 97.566 493 9 1 1 490 186526060 186525568 0.000000e+00 841.0
11 TraesCS7B01G151400 chr1B 93.269 104 7 0 387 490 186526394 186526497 1.430000e-33 154.0
12 TraesCS7B01G151400 chr4B 95.538 493 19 1 1 490 86089822 86089330 0.000000e+00 785.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G151400 chr7B 201259269 201262246 2977 True 2563.5 4222 100.000 1 2978 2 chr7B.!!$R1 2977
1 TraesCS7B01G151400 chr7D 230377986 230380304 2318 True 1842.8 3594 94.059 693 2978 2 chr7D.!!$R1 2285
2 TraesCS7B01G151400 chr7A 242946523 242948709 2186 True 1635.0 2446 93.017 752 2978 2 chr7A.!!$R2 2226

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.027716 TCGCGCTTCTCGTCTGTATC 59.972 55.0 5.56 0.0 41.07 2.24 F
358 359 0.107081 TTCTCAACCTTTTCCGGCGA 59.893 50.0 9.30 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 1656 0.040514 TTCAATTTCGTGCAGCGTGG 60.041 50.0 8.22 0.0 42.13 4.94 R
2263 2324 0.694771 ACAGTGTGCACATCCAGGAT 59.305 50.0 24.69 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.187056 GCCTGTAGCGAGTTCACC 57.813 61.111 0.00 0.00 0.00 4.02
40 41 1.805945 GCCTGTAGCGAGTTCACCG 60.806 63.158 0.00 0.00 0.00 4.94
41 42 1.880894 CCTGTAGCGAGTTCACCGA 59.119 57.895 0.00 0.00 0.00 4.69
42 43 0.456312 CCTGTAGCGAGTTCACCGAC 60.456 60.000 0.00 0.00 0.00 4.79
43 44 0.522180 CTGTAGCGAGTTCACCGACT 59.478 55.000 0.00 0.00 0.00 4.18
44 45 0.520404 TGTAGCGAGTTCACCGACTC 59.480 55.000 0.00 0.00 42.05 3.36
45 46 0.179169 GTAGCGAGTTCACCGACTCC 60.179 60.000 0.00 0.00 42.41 3.85
46 47 0.322277 TAGCGAGTTCACCGACTCCT 60.322 55.000 0.00 1.71 42.41 3.69
47 48 1.179814 AGCGAGTTCACCGACTCCTT 61.180 55.000 0.00 0.00 42.41 3.36
48 49 0.319641 GCGAGTTCACCGACTCCTTT 60.320 55.000 0.00 0.00 42.41 3.11
49 50 1.419374 CGAGTTCACCGACTCCTTTG 58.581 55.000 0.00 0.00 42.41 2.77
50 51 1.000607 CGAGTTCACCGACTCCTTTGA 60.001 52.381 0.00 0.00 42.41 2.69
51 52 2.352814 CGAGTTCACCGACTCCTTTGAT 60.353 50.000 0.00 0.00 42.41 2.57
52 53 2.996621 GAGTTCACCGACTCCTTTGATG 59.003 50.000 0.00 0.00 40.10 3.07
53 54 2.076863 GTTCACCGACTCCTTTGATGG 58.923 52.381 0.00 0.00 0.00 3.51
54 55 0.036388 TCACCGACTCCTTTGATGGC 60.036 55.000 0.00 0.00 0.00 4.40
55 56 1.026718 CACCGACTCCTTTGATGGCC 61.027 60.000 0.00 0.00 0.00 5.36
56 57 1.815421 CCGACTCCTTTGATGGCCG 60.815 63.158 0.00 0.00 0.00 6.13
57 58 2.464459 CGACTCCTTTGATGGCCGC 61.464 63.158 0.00 0.00 0.00 6.53
58 59 2.436646 ACTCCTTTGATGGCCGCG 60.437 61.111 0.00 0.00 0.00 6.46
59 60 2.436646 CTCCTTTGATGGCCGCGT 60.437 61.111 4.92 0.00 0.00 6.01
60 61 2.745884 TCCTTTGATGGCCGCGTG 60.746 61.111 4.92 0.00 0.00 5.34
61 62 4.481112 CCTTTGATGGCCGCGTGC 62.481 66.667 4.92 8.33 40.16 5.34
62 63 3.736100 CTTTGATGGCCGCGTGCA 61.736 61.111 18.87 7.72 43.89 4.57
63 64 3.266230 CTTTGATGGCCGCGTGCAA 62.266 57.895 18.87 10.10 43.89 4.08
64 65 3.266230 TTTGATGGCCGCGTGCAAG 62.266 57.895 18.87 0.00 43.89 4.01
66 67 4.465512 GATGGCCGCGTGCAAGTG 62.466 66.667 18.87 6.19 43.89 3.16
68 69 3.892740 ATGGCCGCGTGCAAGTGTA 62.893 57.895 18.87 0.00 43.89 2.90
69 70 3.124921 GGCCGCGTGCAAGTGTAT 61.125 61.111 18.87 0.00 43.89 2.29
70 71 2.399611 GCCGCGTGCAAGTGTATC 59.600 61.111 12.19 0.00 40.77 2.24
71 72 2.100631 GCCGCGTGCAAGTGTATCT 61.101 57.895 12.19 0.00 40.77 1.98
72 73 1.999051 CCGCGTGCAAGTGTATCTC 59.001 57.895 12.19 0.00 0.00 2.75
73 74 1.421410 CCGCGTGCAAGTGTATCTCC 61.421 60.000 12.19 0.00 0.00 3.71
74 75 1.421410 CGCGTGCAAGTGTATCTCCC 61.421 60.000 4.93 0.00 0.00 4.30
75 76 0.108138 GCGTGCAAGTGTATCTCCCT 60.108 55.000 0.59 0.00 0.00 4.20
76 77 1.927895 CGTGCAAGTGTATCTCCCTC 58.072 55.000 0.00 0.00 0.00 4.30
77 78 1.204704 CGTGCAAGTGTATCTCCCTCA 59.795 52.381 0.00 0.00 0.00 3.86
78 79 2.736719 CGTGCAAGTGTATCTCCCTCAG 60.737 54.545 0.00 0.00 0.00 3.35
79 80 1.208052 TGCAAGTGTATCTCCCTCAGC 59.792 52.381 0.00 0.00 0.00 4.26
80 81 1.484240 GCAAGTGTATCTCCCTCAGCT 59.516 52.381 0.00 0.00 0.00 4.24
81 82 2.093235 GCAAGTGTATCTCCCTCAGCTT 60.093 50.000 0.00 0.00 0.00 3.74
82 83 3.529533 CAAGTGTATCTCCCTCAGCTTG 58.470 50.000 0.00 0.00 0.00 4.01
83 84 2.826488 AGTGTATCTCCCTCAGCTTGT 58.174 47.619 0.00 0.00 0.00 3.16
84 85 2.763448 AGTGTATCTCCCTCAGCTTGTC 59.237 50.000 0.00 0.00 0.00 3.18
85 86 1.751351 TGTATCTCCCTCAGCTTGTCG 59.249 52.381 0.00 0.00 0.00 4.35
86 87 2.025155 GTATCTCCCTCAGCTTGTCGA 58.975 52.381 0.00 0.00 0.00 4.20
87 88 1.110442 ATCTCCCTCAGCTTGTCGAG 58.890 55.000 0.00 0.00 0.00 4.04
88 89 0.038310 TCTCCCTCAGCTTGTCGAGA 59.962 55.000 0.48 0.00 0.00 4.04
89 90 1.110442 CTCCCTCAGCTTGTCGAGAT 58.890 55.000 0.48 0.00 0.00 2.75
90 91 1.066908 CTCCCTCAGCTTGTCGAGATC 59.933 57.143 0.48 0.00 0.00 2.75
91 92 0.248825 CCCTCAGCTTGTCGAGATCG 60.249 60.000 0.48 0.00 41.45 3.69
102 103 3.441246 CGAGATCGAACCTACTCGC 57.559 57.895 13.06 0.00 43.71 5.03
103 104 0.383246 CGAGATCGAACCTACTCGCG 60.383 60.000 0.00 0.00 43.71 5.87
104 105 0.657951 GAGATCGAACCTACTCGCGC 60.658 60.000 0.00 0.00 38.73 6.86
105 106 1.096386 AGATCGAACCTACTCGCGCT 61.096 55.000 5.56 0.00 38.73 5.92
106 107 0.248539 GATCGAACCTACTCGCGCTT 60.249 55.000 5.56 0.00 38.73 4.68
107 108 0.248539 ATCGAACCTACTCGCGCTTC 60.249 55.000 5.56 0.00 38.73 3.86
108 109 1.136984 CGAACCTACTCGCGCTTCT 59.863 57.895 5.56 0.00 31.04 2.85
109 110 0.862283 CGAACCTACTCGCGCTTCTC 60.862 60.000 5.56 0.00 31.04 2.87
110 111 0.862283 GAACCTACTCGCGCTTCTCG 60.862 60.000 5.56 0.00 42.12 4.04
111 112 1.584380 AACCTACTCGCGCTTCTCGT 61.584 55.000 5.56 0.00 41.07 4.18
112 113 1.297745 CCTACTCGCGCTTCTCGTC 60.298 63.158 5.56 0.00 41.07 4.20
113 114 1.707239 CCTACTCGCGCTTCTCGTCT 61.707 60.000 5.56 0.00 41.07 4.18
114 115 0.587737 CTACTCGCGCTTCTCGTCTG 60.588 60.000 5.56 0.00 41.07 3.51
115 116 1.296755 TACTCGCGCTTCTCGTCTGT 61.297 55.000 5.56 0.00 41.07 3.41
116 117 1.296755 ACTCGCGCTTCTCGTCTGTA 61.297 55.000 5.56 0.00 41.07 2.74
117 118 0.028242 CTCGCGCTTCTCGTCTGTAT 59.972 55.000 5.56 0.00 41.07 2.29
118 119 0.027716 TCGCGCTTCTCGTCTGTATC 59.972 55.000 5.56 0.00 41.07 2.24
119 120 1.256284 CGCGCTTCTCGTCTGTATCG 61.256 60.000 5.56 0.00 41.07 2.92
120 121 1.533165 GCGCTTCTCGTCTGTATCGC 61.533 60.000 0.00 0.00 41.07 4.58
121 122 0.930742 CGCTTCTCGTCTGTATCGCC 60.931 60.000 0.00 0.00 0.00 5.54
122 123 0.595310 GCTTCTCGTCTGTATCGCCC 60.595 60.000 0.00 0.00 0.00 6.13
123 124 1.025812 CTTCTCGTCTGTATCGCCCT 58.974 55.000 0.00 0.00 0.00 5.19
124 125 0.738975 TTCTCGTCTGTATCGCCCTG 59.261 55.000 0.00 0.00 0.00 4.45
125 126 1.101635 TCTCGTCTGTATCGCCCTGG 61.102 60.000 0.00 0.00 0.00 4.45
126 127 2.279517 CGTCTGTATCGCCCTGGC 60.280 66.667 0.00 0.00 37.85 4.85
127 128 2.786495 CGTCTGTATCGCCCTGGCT 61.786 63.158 6.60 0.00 39.32 4.75
128 129 1.068250 GTCTGTATCGCCCTGGCTC 59.932 63.158 6.60 0.00 39.32 4.70
129 130 1.381191 TCTGTATCGCCCTGGCTCA 60.381 57.895 6.60 0.14 39.32 4.26
130 131 1.227380 CTGTATCGCCCTGGCTCAC 60.227 63.158 6.60 2.05 39.32 3.51
131 132 2.109181 GTATCGCCCTGGCTCACC 59.891 66.667 6.60 0.00 39.32 4.02
132 133 2.364973 TATCGCCCTGGCTCACCA 60.365 61.111 6.60 0.00 46.51 4.17
141 142 3.157727 TGGCTCACCATGAATCGTG 57.842 52.632 0.00 0.00 42.67 4.35
142 143 0.612744 TGGCTCACCATGAATCGTGA 59.387 50.000 3.65 0.00 42.67 4.35
143 144 1.009829 GGCTCACCATGAATCGTGAC 58.990 55.000 3.65 0.00 35.25 3.67
144 145 1.675714 GGCTCACCATGAATCGTGACA 60.676 52.381 3.65 0.00 35.25 3.58
145 146 1.662629 GCTCACCATGAATCGTGACAG 59.337 52.381 3.65 0.00 35.25 3.51
146 147 2.274437 CTCACCATGAATCGTGACAGG 58.726 52.381 3.65 0.00 35.25 4.00
147 148 1.899142 TCACCATGAATCGTGACAGGA 59.101 47.619 3.65 0.00 34.14 3.86
148 149 2.501316 TCACCATGAATCGTGACAGGAT 59.499 45.455 3.65 4.80 34.14 3.24
149 150 2.610833 CACCATGAATCGTGACAGGATG 59.389 50.000 11.22 0.99 46.00 3.51
161 162 3.776616 CAGGATGTCAGGCTTCTCC 57.223 57.895 0.00 0.00 0.00 3.71
163 164 2.392662 CAGGATGTCAGGCTTCTCCTA 58.607 52.381 4.20 0.00 45.52 2.94
164 165 2.971330 CAGGATGTCAGGCTTCTCCTAT 59.029 50.000 4.20 0.00 45.52 2.57
165 166 3.006752 CAGGATGTCAGGCTTCTCCTATC 59.993 52.174 4.20 0.00 45.52 2.08
166 167 3.116784 AGGATGTCAGGCTTCTCCTATCT 60.117 47.826 2.89 0.00 45.52 1.98
167 168 3.258123 GGATGTCAGGCTTCTCCTATCTC 59.742 52.174 0.00 0.00 45.52 2.75
168 169 3.388552 TGTCAGGCTTCTCCTATCTCA 57.611 47.619 0.00 0.00 45.52 3.27
169 170 3.921104 TGTCAGGCTTCTCCTATCTCAT 58.079 45.455 0.00 0.00 45.52 2.90
170 171 3.894427 TGTCAGGCTTCTCCTATCTCATC 59.106 47.826 0.00 0.00 45.52 2.92
171 172 4.151883 GTCAGGCTTCTCCTATCTCATCT 58.848 47.826 0.00 0.00 45.52 2.90
172 173 4.218417 GTCAGGCTTCTCCTATCTCATCTC 59.782 50.000 0.00 0.00 45.52 2.75
173 174 3.511146 CAGGCTTCTCCTATCTCATCTCC 59.489 52.174 0.00 0.00 45.52 3.71
174 175 3.402366 AGGCTTCTCCTATCTCATCTCCT 59.598 47.826 0.00 0.00 45.41 3.69
175 176 3.763897 GGCTTCTCCTATCTCATCTCCTC 59.236 52.174 0.00 0.00 0.00 3.71
176 177 4.406456 GCTTCTCCTATCTCATCTCCTCA 58.594 47.826 0.00 0.00 0.00 3.86
177 178 4.218417 GCTTCTCCTATCTCATCTCCTCAC 59.782 50.000 0.00 0.00 0.00 3.51
178 179 5.384336 CTTCTCCTATCTCATCTCCTCACA 58.616 45.833 0.00 0.00 0.00 3.58
179 180 4.724399 TCTCCTATCTCATCTCCTCACAC 58.276 47.826 0.00 0.00 0.00 3.82
180 181 4.166919 TCTCCTATCTCATCTCCTCACACA 59.833 45.833 0.00 0.00 0.00 3.72
181 182 4.468713 TCCTATCTCATCTCCTCACACAG 58.531 47.826 0.00 0.00 0.00 3.66
182 183 3.005684 CCTATCTCATCTCCTCACACAGC 59.994 52.174 0.00 0.00 0.00 4.40
183 184 1.189752 TCTCATCTCCTCACACAGCC 58.810 55.000 0.00 0.00 0.00 4.85
184 185 0.179116 CTCATCTCCTCACACAGCCG 60.179 60.000 0.00 0.00 0.00 5.52
185 186 1.812922 CATCTCCTCACACAGCCGC 60.813 63.158 0.00 0.00 0.00 6.53
186 187 3.362399 ATCTCCTCACACAGCCGCG 62.362 63.158 0.00 0.00 0.00 6.46
232 233 2.125310 CGCTCGGCACCCATGTTA 60.125 61.111 0.00 0.00 0.00 2.41
233 234 2.173669 CGCTCGGCACCCATGTTAG 61.174 63.158 0.00 0.00 0.00 2.34
234 235 2.472909 GCTCGGCACCCATGTTAGC 61.473 63.158 0.00 0.00 0.00 3.09
235 236 2.125310 TCGGCACCCATGTTAGCG 60.125 61.111 0.00 0.00 0.00 4.26
236 237 2.435938 CGGCACCCATGTTAGCGT 60.436 61.111 0.00 0.00 0.00 5.07
237 238 2.461110 CGGCACCCATGTTAGCGTC 61.461 63.158 0.00 0.00 0.00 5.19
238 239 1.078426 GGCACCCATGTTAGCGTCT 60.078 57.895 0.00 0.00 0.00 4.18
239 240 0.676782 GGCACCCATGTTAGCGTCTT 60.677 55.000 0.00 0.00 0.00 3.01
240 241 0.727398 GCACCCATGTTAGCGTCTTC 59.273 55.000 0.00 0.00 0.00 2.87
241 242 1.676014 GCACCCATGTTAGCGTCTTCT 60.676 52.381 0.00 0.00 0.00 2.85
242 243 2.699954 CACCCATGTTAGCGTCTTCTT 58.300 47.619 0.00 0.00 0.00 2.52
243 244 3.074412 CACCCATGTTAGCGTCTTCTTT 58.926 45.455 0.00 0.00 0.00 2.52
244 245 3.502211 CACCCATGTTAGCGTCTTCTTTT 59.498 43.478 0.00 0.00 0.00 2.27
245 246 4.023193 CACCCATGTTAGCGTCTTCTTTTT 60.023 41.667 0.00 0.00 0.00 1.94
246 247 4.215613 ACCCATGTTAGCGTCTTCTTTTTC 59.784 41.667 0.00 0.00 0.00 2.29
247 248 4.455877 CCCATGTTAGCGTCTTCTTTTTCT 59.544 41.667 0.00 0.00 0.00 2.52
248 249 5.048713 CCCATGTTAGCGTCTTCTTTTTCTT 60.049 40.000 0.00 0.00 0.00 2.52
249 250 6.080406 CCATGTTAGCGTCTTCTTTTTCTTC 58.920 40.000 0.00 0.00 0.00 2.87
250 251 5.668558 TGTTAGCGTCTTCTTTTTCTTCC 57.331 39.130 0.00 0.00 0.00 3.46
251 252 5.120399 TGTTAGCGTCTTCTTTTTCTTCCA 58.880 37.500 0.00 0.00 0.00 3.53
252 253 5.236478 TGTTAGCGTCTTCTTTTTCTTCCAG 59.764 40.000 0.00 0.00 0.00 3.86
253 254 4.073293 AGCGTCTTCTTTTTCTTCCAGA 57.927 40.909 0.00 0.00 0.00 3.86
254 255 4.451900 AGCGTCTTCTTTTTCTTCCAGAA 58.548 39.130 0.00 0.00 31.28 3.02
255 256 5.066593 AGCGTCTTCTTTTTCTTCCAGAAT 58.933 37.500 0.00 0.00 33.67 2.40
256 257 5.532779 AGCGTCTTCTTTTTCTTCCAGAATT 59.467 36.000 0.00 0.00 33.67 2.17
257 258 5.853810 GCGTCTTCTTTTTCTTCCAGAATTC 59.146 40.000 0.00 0.00 33.67 2.17
258 259 6.293680 GCGTCTTCTTTTTCTTCCAGAATTCT 60.294 38.462 0.88 0.88 33.67 2.40
259 260 7.074502 CGTCTTCTTTTTCTTCCAGAATTCTG 58.925 38.462 25.75 25.75 43.40 3.02
267 268 3.799753 CAGAATTCTGGGGCGACG 58.200 61.111 25.14 0.00 40.20 5.12
268 269 1.079127 CAGAATTCTGGGGCGACGT 60.079 57.895 25.14 0.00 40.20 4.34
269 270 0.174845 CAGAATTCTGGGGCGACGTA 59.825 55.000 25.14 0.00 40.20 3.57
270 271 0.175073 AGAATTCTGGGGCGACGTAC 59.825 55.000 7.30 0.00 0.00 3.67
271 272 0.808847 GAATTCTGGGGCGACGTACC 60.809 60.000 0.00 0.00 0.00 3.34
272 273 1.546589 AATTCTGGGGCGACGTACCA 61.547 55.000 9.17 11.26 0.00 3.25
273 274 1.335132 ATTCTGGGGCGACGTACCAT 61.335 55.000 12.01 0.00 33.07 3.55
274 275 0.683828 TTCTGGGGCGACGTACCATA 60.684 55.000 12.01 4.04 33.07 2.74
275 276 1.066918 CTGGGGCGACGTACCATAC 59.933 63.158 12.01 0.28 33.07 2.39
276 277 2.359570 CTGGGGCGACGTACCATACC 62.360 65.000 12.01 2.40 33.07 2.73
277 278 2.129785 GGGGCGACGTACCATACCT 61.130 63.158 9.17 0.00 0.00 3.08
278 279 0.823356 GGGGCGACGTACCATACCTA 60.823 60.000 9.17 0.00 0.00 3.08
279 280 0.312102 GGGCGACGTACCATACCTAC 59.688 60.000 9.17 0.00 0.00 3.18
280 281 1.312815 GGCGACGTACCATACCTACT 58.687 55.000 2.25 0.00 0.00 2.57
281 282 1.265365 GGCGACGTACCATACCTACTC 59.735 57.143 2.25 0.00 0.00 2.59
282 283 1.070309 GCGACGTACCATACCTACTCG 60.070 57.143 0.00 0.00 0.00 4.18
283 284 1.070309 CGACGTACCATACCTACTCGC 60.070 57.143 0.00 0.00 0.00 5.03
284 285 0.940126 ACGTACCATACCTACTCGCG 59.060 55.000 0.00 0.00 0.00 5.87
285 286 0.385223 CGTACCATACCTACTCGCGC 60.385 60.000 0.00 0.00 0.00 6.86
286 287 0.950116 GTACCATACCTACTCGCGCT 59.050 55.000 5.56 0.00 0.00 5.92
287 288 0.949397 TACCATACCTACTCGCGCTG 59.051 55.000 5.56 0.00 0.00 5.18
288 289 0.750546 ACCATACCTACTCGCGCTGA 60.751 55.000 5.56 3.55 0.00 4.26
298 299 3.847621 TCGCGCTGAGATTAGTAGC 57.152 52.632 5.56 0.00 0.00 3.58
307 308 6.830114 GCTGAGATTAGTAGCGTTAAACAT 57.170 37.500 0.00 0.00 0.00 2.71
308 309 7.925703 GCTGAGATTAGTAGCGTTAAACATA 57.074 36.000 0.00 0.00 0.00 2.29
309 310 7.775504 GCTGAGATTAGTAGCGTTAAACATAC 58.224 38.462 0.00 0.00 0.00 2.39
310 311 7.096147 GCTGAGATTAGTAGCGTTAAACATACC 60.096 40.741 0.00 0.00 0.00 2.73
311 312 6.914215 TGAGATTAGTAGCGTTAAACATACCG 59.086 38.462 0.00 0.00 0.00 4.02
312 313 6.211515 AGATTAGTAGCGTTAAACATACCGG 58.788 40.000 0.00 0.00 0.00 5.28
313 314 2.543641 AGTAGCGTTAAACATACCGGC 58.456 47.619 0.00 0.00 0.00 6.13
314 315 1.256117 GTAGCGTTAAACATACCGGCG 59.744 52.381 0.00 0.00 0.00 6.46
315 316 0.108709 AGCGTTAAACATACCGGCGA 60.109 50.000 9.30 0.00 0.00 5.54
316 317 0.720590 GCGTTAAACATACCGGCGAA 59.279 50.000 9.30 0.00 0.00 4.70
317 318 1.527591 GCGTTAAACATACCGGCGAAC 60.528 52.381 9.30 0.45 0.00 3.95
318 319 1.060986 CGTTAAACATACCGGCGAACC 59.939 52.381 9.30 0.00 0.00 3.62
319 320 2.349590 GTTAAACATACCGGCGAACCT 58.650 47.619 9.30 0.00 0.00 3.50
320 321 2.012937 TAAACATACCGGCGAACCTG 57.987 50.000 9.30 2.60 0.00 4.00
321 322 1.303091 AAACATACCGGCGAACCTGC 61.303 55.000 9.30 0.00 0.00 4.85
322 323 2.180159 AACATACCGGCGAACCTGCT 62.180 55.000 9.30 0.00 34.52 4.24
323 324 2.173669 CATACCGGCGAACCTGCTG 61.174 63.158 9.30 0.00 41.02 4.41
324 325 4.752879 TACCGGCGAACCTGCTGC 62.753 66.667 9.30 0.00 39.99 5.25
328 329 3.426568 GGCGAACCTGCTGCTCAC 61.427 66.667 0.00 0.00 34.52 3.51
329 330 3.782244 GCGAACCTGCTGCTCACG 61.782 66.667 0.00 1.42 0.00 4.35
330 331 2.356313 CGAACCTGCTGCTCACGT 60.356 61.111 0.00 0.00 0.00 4.49
331 332 1.956170 CGAACCTGCTGCTCACGTT 60.956 57.895 0.00 0.00 0.00 3.99
332 333 1.862806 GAACCTGCTGCTCACGTTC 59.137 57.895 0.00 3.86 34.98 3.95
333 334 1.891060 GAACCTGCTGCTCACGTTCG 61.891 60.000 0.00 0.00 33.38 3.95
334 335 2.356313 CCTGCTGCTCACGTTCGT 60.356 61.111 0.00 0.00 0.00 3.85
335 336 2.661566 CCTGCTGCTCACGTTCGTG 61.662 63.158 17.57 17.57 37.47 4.35
336 337 2.661537 TGCTGCTCACGTTCGTGG 60.662 61.111 22.02 14.76 36.82 4.94
337 338 2.661866 GCTGCTCACGTTCGTGGT 60.662 61.111 22.02 0.00 36.82 4.16
338 339 2.943345 GCTGCTCACGTTCGTGGTG 61.943 63.158 22.02 16.45 36.82 4.17
339 340 1.591594 CTGCTCACGTTCGTGGTGT 60.592 57.895 22.02 0.00 36.76 4.16
340 341 1.151777 CTGCTCACGTTCGTGGTGTT 61.152 55.000 22.02 0.00 36.76 3.32
341 342 1.149361 TGCTCACGTTCGTGGTGTTC 61.149 55.000 22.02 9.68 36.76 3.18
342 343 0.874607 GCTCACGTTCGTGGTGTTCT 60.875 55.000 22.02 0.00 36.76 3.01
343 344 1.129326 CTCACGTTCGTGGTGTTCTC 58.871 55.000 22.02 0.00 36.76 2.87
344 345 0.456628 TCACGTTCGTGGTGTTCTCA 59.543 50.000 22.02 0.98 36.76 3.27
345 346 1.135053 TCACGTTCGTGGTGTTCTCAA 60.135 47.619 22.02 0.33 36.76 3.02
346 347 1.005347 CACGTTCGTGGTGTTCTCAAC 60.005 52.381 16.17 0.00 32.93 3.18
347 348 0.580104 CGTTCGTGGTGTTCTCAACC 59.420 55.000 0.00 0.00 0.00 3.77
348 349 1.805120 CGTTCGTGGTGTTCTCAACCT 60.805 52.381 0.00 0.00 0.00 3.50
349 350 2.285977 GTTCGTGGTGTTCTCAACCTT 58.714 47.619 0.00 0.00 0.00 3.50
350 351 2.681344 GTTCGTGGTGTTCTCAACCTTT 59.319 45.455 0.00 0.00 0.00 3.11
351 352 2.993937 TCGTGGTGTTCTCAACCTTTT 58.006 42.857 0.00 0.00 0.00 2.27
352 353 2.940410 TCGTGGTGTTCTCAACCTTTTC 59.060 45.455 0.00 0.00 0.00 2.29
353 354 2.032924 CGTGGTGTTCTCAACCTTTTCC 59.967 50.000 0.00 0.00 0.00 3.13
354 355 2.032924 GTGGTGTTCTCAACCTTTTCCG 59.967 50.000 0.00 0.00 0.00 4.30
355 356 1.607148 GGTGTTCTCAACCTTTTCCGG 59.393 52.381 0.00 0.00 0.00 5.14
356 357 1.001706 GTGTTCTCAACCTTTTCCGGC 60.002 52.381 0.00 0.00 0.00 6.13
357 358 0.237498 GTTCTCAACCTTTTCCGGCG 59.763 55.000 0.00 0.00 0.00 6.46
358 359 0.107081 TTCTCAACCTTTTCCGGCGA 59.893 50.000 9.30 0.00 0.00 5.54
359 360 0.601841 TCTCAACCTTTTCCGGCGAC 60.602 55.000 9.30 0.00 0.00 5.19
360 361 1.574702 CTCAACCTTTTCCGGCGACC 61.575 60.000 9.30 0.00 0.00 4.79
379 380 4.289245 CCGTCGTCGTGGGTGGTT 62.289 66.667 0.71 0.00 35.01 3.67
380 381 2.279650 CGTCGTCGTGGGTGGTTT 60.280 61.111 0.00 0.00 0.00 3.27
381 382 1.884004 CGTCGTCGTGGGTGGTTTT 60.884 57.895 0.00 0.00 0.00 2.43
382 383 0.597118 CGTCGTCGTGGGTGGTTTTA 60.597 55.000 0.00 0.00 0.00 1.52
383 384 1.799544 GTCGTCGTGGGTGGTTTTAT 58.200 50.000 0.00 0.00 0.00 1.40
384 385 1.728425 GTCGTCGTGGGTGGTTTTATC 59.272 52.381 0.00 0.00 0.00 1.75
385 386 0.717224 CGTCGTGGGTGGTTTTATCG 59.283 55.000 0.00 0.00 0.00 2.92
386 387 1.669502 CGTCGTGGGTGGTTTTATCGA 60.670 52.381 0.00 0.00 0.00 3.59
387 388 2.624636 GTCGTGGGTGGTTTTATCGAT 58.375 47.619 2.16 2.16 0.00 3.59
388 389 3.004862 GTCGTGGGTGGTTTTATCGATT 58.995 45.455 1.71 0.00 0.00 3.34
389 390 4.183101 GTCGTGGGTGGTTTTATCGATTA 58.817 43.478 1.71 0.00 0.00 1.75
390 391 4.630940 GTCGTGGGTGGTTTTATCGATTAA 59.369 41.667 1.71 0.00 0.00 1.40
391 392 5.295045 GTCGTGGGTGGTTTTATCGATTAAT 59.705 40.000 1.71 0.00 0.00 1.40
392 393 5.524646 TCGTGGGTGGTTTTATCGATTAATC 59.475 40.000 1.71 5.30 0.00 1.75
393 394 5.294799 CGTGGGTGGTTTTATCGATTAATCA 59.705 40.000 15.57 2.37 0.00 2.57
394 395 6.492254 GTGGGTGGTTTTATCGATTAATCAC 58.508 40.000 19.96 19.96 0.00 3.06
395 396 6.094325 GTGGGTGGTTTTATCGATTAATCACA 59.906 38.462 25.18 12.31 0.00 3.58
396 397 6.831353 TGGGTGGTTTTATCGATTAATCACAT 59.169 34.615 25.18 8.80 0.00 3.21
397 398 7.138736 GGGTGGTTTTATCGATTAATCACATG 58.861 38.462 25.18 0.00 0.00 3.21
398 399 7.012894 GGGTGGTTTTATCGATTAATCACATGA 59.987 37.037 25.18 4.92 0.00 3.07
399 400 8.567948 GGTGGTTTTATCGATTAATCACATGAT 58.432 33.333 25.18 11.37 36.07 2.45
400 401 9.950680 GTGGTTTTATCGATTAATCACATGATT 57.049 29.630 21.82 11.66 45.77 2.57
414 415 8.517062 AATCACATGATTAAGAAAGAGGAAGG 57.483 34.615 5.29 0.00 42.48 3.46
415 416 7.257790 TCACATGATTAAGAAAGAGGAAGGA 57.742 36.000 0.00 0.00 0.00 3.36
416 417 7.334090 TCACATGATTAAGAAAGAGGAAGGAG 58.666 38.462 0.00 0.00 0.00 3.69
417 418 7.180946 TCACATGATTAAGAAAGAGGAAGGAGA 59.819 37.037 0.00 0.00 0.00 3.71
418 419 7.495279 CACATGATTAAGAAAGAGGAAGGAGAG 59.505 40.741 0.00 0.00 0.00 3.20
419 420 5.983540 TGATTAAGAAAGAGGAAGGAGAGC 58.016 41.667 0.00 0.00 0.00 4.09
420 421 4.828072 TTAAGAAAGAGGAAGGAGAGCC 57.172 45.455 0.00 0.00 0.00 4.70
421 422 1.578897 AGAAAGAGGAAGGAGAGCCC 58.421 55.000 0.00 0.00 33.31 5.19
431 432 2.877154 AGGAGAGCCCTTGGATAGAA 57.123 50.000 0.00 0.00 44.85 2.10
432 433 3.136641 AGGAGAGCCCTTGGATAGAAA 57.863 47.619 0.00 0.00 44.85 2.52
433 434 3.674477 AGGAGAGCCCTTGGATAGAAAT 58.326 45.455 0.00 0.00 44.85 2.17
434 435 3.393941 AGGAGAGCCCTTGGATAGAAATG 59.606 47.826 0.00 0.00 44.85 2.32
435 436 3.497584 GGAGAGCCCTTGGATAGAAATGG 60.498 52.174 0.00 0.00 0.00 3.16
436 437 3.392616 GAGAGCCCTTGGATAGAAATGGA 59.607 47.826 0.00 0.00 0.00 3.41
437 438 3.137360 AGAGCCCTTGGATAGAAATGGAC 59.863 47.826 0.00 0.00 0.00 4.02
438 439 2.158755 AGCCCTTGGATAGAAATGGACG 60.159 50.000 0.00 0.00 0.00 4.79
439 440 2.851195 CCCTTGGATAGAAATGGACGG 58.149 52.381 0.00 0.00 0.00 4.79
440 441 2.222027 CCTTGGATAGAAATGGACGGC 58.778 52.381 0.00 0.00 0.00 5.68
441 442 2.421388 CCTTGGATAGAAATGGACGGCA 60.421 50.000 0.00 0.00 0.00 5.69
442 443 2.620251 TGGATAGAAATGGACGGCAG 57.380 50.000 0.00 0.00 0.00 4.85
443 444 2.115427 TGGATAGAAATGGACGGCAGA 58.885 47.619 0.00 0.00 0.00 4.26
444 445 2.705658 TGGATAGAAATGGACGGCAGAT 59.294 45.455 0.00 0.00 0.00 2.90
445 446 3.136443 TGGATAGAAATGGACGGCAGATT 59.864 43.478 0.00 0.00 0.00 2.40
446 447 4.137543 GGATAGAAATGGACGGCAGATTT 58.862 43.478 0.00 0.00 0.00 2.17
447 448 4.580580 GGATAGAAATGGACGGCAGATTTT 59.419 41.667 0.00 0.00 0.00 1.82
448 449 5.763204 GGATAGAAATGGACGGCAGATTTTA 59.237 40.000 0.00 0.00 0.00 1.52
449 450 6.262273 GGATAGAAATGGACGGCAGATTTTAA 59.738 38.462 0.00 0.00 0.00 1.52
450 451 7.040409 GGATAGAAATGGACGGCAGATTTTAAT 60.040 37.037 0.00 0.00 0.00 1.40
451 452 8.918202 ATAGAAATGGACGGCAGATTTTAATA 57.082 30.769 0.00 0.00 0.00 0.98
452 453 7.027778 AGAAATGGACGGCAGATTTTAATAC 57.972 36.000 0.00 0.00 0.00 1.89
453 454 5.767816 AATGGACGGCAGATTTTAATACC 57.232 39.130 0.00 0.00 0.00 2.73
454 455 4.223556 TGGACGGCAGATTTTAATACCA 57.776 40.909 0.00 0.00 0.00 3.25
455 456 4.590918 TGGACGGCAGATTTTAATACCAA 58.409 39.130 0.00 0.00 0.00 3.67
456 457 4.396790 TGGACGGCAGATTTTAATACCAAC 59.603 41.667 0.00 0.00 0.00 3.77
457 458 4.396790 GGACGGCAGATTTTAATACCAACA 59.603 41.667 0.00 0.00 0.00 3.33
458 459 5.448632 GGACGGCAGATTTTAATACCAACAG 60.449 44.000 0.00 0.00 0.00 3.16
459 460 4.142469 ACGGCAGATTTTAATACCAACAGC 60.142 41.667 0.00 0.00 0.00 4.40
460 461 4.142491 CGGCAGATTTTAATACCAACAGCA 60.142 41.667 0.00 0.00 0.00 4.41
461 462 5.102313 GGCAGATTTTAATACCAACAGCAC 58.898 41.667 0.00 0.00 0.00 4.40
462 463 5.102313 GCAGATTTTAATACCAACAGCACC 58.898 41.667 0.00 0.00 0.00 5.01
463 464 5.105756 GCAGATTTTAATACCAACAGCACCT 60.106 40.000 0.00 0.00 0.00 4.00
464 465 6.324819 CAGATTTTAATACCAACAGCACCTG 58.675 40.000 0.00 0.00 37.52 4.00
466 467 7.120579 CAGATTTTAATACCAACAGCACCTGTA 59.879 37.037 0.00 0.00 44.62 2.74
467 468 6.563222 TTTTAATACCAACAGCACCTGTAC 57.437 37.500 0.00 0.00 44.62 2.90
468 469 3.780804 AATACCAACAGCACCTGTACA 57.219 42.857 0.00 0.00 44.62 2.90
469 470 2.831685 TACCAACAGCACCTGTACAG 57.168 50.000 16.34 16.34 44.62 2.74
470 471 0.837272 ACCAACAGCACCTGTACAGT 59.163 50.000 21.18 7.09 44.62 3.55
471 472 2.043992 ACCAACAGCACCTGTACAGTA 58.956 47.619 21.18 0.00 44.62 2.74
472 473 2.436542 ACCAACAGCACCTGTACAGTAA 59.563 45.455 21.18 0.00 44.62 2.24
473 474 2.806244 CCAACAGCACCTGTACAGTAAC 59.194 50.000 21.18 9.75 44.62 2.50
474 475 3.494398 CCAACAGCACCTGTACAGTAACT 60.494 47.826 21.18 11.79 44.62 2.24
475 476 4.262292 CCAACAGCACCTGTACAGTAACTA 60.262 45.833 21.18 0.00 44.62 2.24
476 477 4.516365 ACAGCACCTGTACAGTAACTAC 57.484 45.455 21.18 5.02 43.46 2.73
477 478 3.893200 ACAGCACCTGTACAGTAACTACA 59.107 43.478 21.18 0.00 43.46 2.74
478 479 4.235360 CAGCACCTGTACAGTAACTACAC 58.765 47.826 21.18 2.56 0.00 2.90
479 480 3.057736 AGCACCTGTACAGTAACTACACG 60.058 47.826 21.18 5.39 0.00 4.49
480 481 3.058016 GCACCTGTACAGTAACTACACGA 60.058 47.826 21.18 0.00 0.00 4.35
481 482 4.470462 CACCTGTACAGTAACTACACGAC 58.530 47.826 21.18 0.00 0.00 4.34
482 483 4.214971 CACCTGTACAGTAACTACACGACT 59.785 45.833 21.18 0.00 0.00 4.18
483 484 4.214971 ACCTGTACAGTAACTACACGACTG 59.785 45.833 21.18 3.58 44.98 3.51
484 485 4.151258 TGTACAGTAACTACACGACTGC 57.849 45.455 0.00 0.00 43.60 4.40
485 486 3.565063 TGTACAGTAACTACACGACTGCA 59.435 43.478 0.00 0.00 43.60 4.41
486 487 3.284323 ACAGTAACTACACGACTGCAG 57.716 47.619 13.48 13.48 43.60 4.41
487 488 2.882761 ACAGTAACTACACGACTGCAGA 59.117 45.455 23.35 0.00 43.60 4.26
488 489 3.235195 CAGTAACTACACGACTGCAGAC 58.765 50.000 23.35 14.26 34.64 3.51
489 490 2.095869 AGTAACTACACGACTGCAGACG 60.096 50.000 31.60 31.60 38.99 4.18
730 731 4.796231 CGCGACCTTCCGTGGAGG 62.796 72.222 0.00 0.00 42.97 4.30
816 866 4.329545 GCCGTGGGAGGTGAGCAA 62.330 66.667 0.00 0.00 0.00 3.91
864 914 9.667107 TTTCAGTTGTTCAGTTCTATATAAGGG 57.333 33.333 0.00 0.00 0.00 3.95
865 915 8.375493 TCAGTTGTTCAGTTCTATATAAGGGT 57.625 34.615 0.00 0.00 0.00 4.34
866 916 9.483489 TCAGTTGTTCAGTTCTATATAAGGGTA 57.517 33.333 0.00 0.00 0.00 3.69
886 936 5.823045 GGGTAAGGTCGATTCAGATTGATTT 59.177 40.000 0.00 0.00 0.00 2.17
920 981 8.735315 ACGGAGTCAGATTGATATAGAGTAATG 58.265 37.037 0.00 0.00 29.74 1.90
1012 1073 1.971505 TACCAAGATGCTGGGCTCCG 61.972 60.000 0.00 0.00 41.16 4.63
1049 1110 6.674066 TCGAACTGGAATATTCAAAAACCAC 58.326 36.000 17.07 0.00 0.00 4.16
1144 1205 1.922447 ACCCATATGGCACCAAGAAGA 59.078 47.619 16.97 0.00 37.83 2.87
1167 1228 0.457851 GCACAGGCAGATACGTCTCT 59.542 55.000 0.00 0.00 40.72 3.10
1199 1260 1.336240 GCTCGTCAGCAAAGCCAAATT 60.336 47.619 0.00 0.00 46.06 1.82
1595 1656 1.982073 GAGGCTACAATGGCGTGTGC 61.982 60.000 4.06 5.72 41.71 4.57
1703 1764 2.366916 GGGACTCTGTCACTGATATGGG 59.633 54.545 0.07 0.00 32.50 4.00
1707 1768 5.338381 GGACTCTGTCACTGATATGGGAAAA 60.338 44.000 0.07 0.00 33.68 2.29
1713 1774 6.484288 TGTCACTGATATGGGAAAACATCTT 58.516 36.000 0.00 0.00 32.39 2.40
1723 1784 3.572584 GGAAAACATCTTCTTGCTGCAG 58.427 45.455 10.11 10.11 0.00 4.41
1725 1786 1.906990 AACATCTTCTTGCTGCAGCT 58.093 45.000 36.61 14.44 42.66 4.24
1755 1816 1.247567 CATTGGACCGGTTGAAGCTT 58.752 50.000 9.42 0.00 0.00 3.74
1782 1843 1.528129 CTCAGAAGTTGTGGGAAGGC 58.472 55.000 0.00 0.00 0.00 4.35
1790 1851 4.309950 GTGGGAAGGCGTGTCGGT 62.310 66.667 0.00 0.00 0.00 4.69
1791 1852 3.998672 TGGGAAGGCGTGTCGGTC 61.999 66.667 0.00 0.00 0.00 4.79
2131 2192 0.108186 TGCAGCACTGGATTAGACGG 60.108 55.000 0.00 0.00 0.00 4.79
2237 2298 3.077359 GCACTGTCCTGAAGCTTTGTAT 58.923 45.455 0.00 0.00 0.00 2.29
2294 2355 1.959042 CACACTGTCCTGAAGCTTGT 58.041 50.000 2.10 0.00 0.00 3.16
2295 2356 2.292267 CACACTGTCCTGAAGCTTGTT 58.708 47.619 2.10 0.00 0.00 2.83
2400 2463 8.832735 TGGTCCCTTATAAACTATCTCAAACTT 58.167 33.333 0.00 0.00 0.00 2.66
2431 2494 3.883669 TGGTTTTGCAATGAAAAAGCCT 58.116 36.364 21.70 0.00 41.86 4.58
2845 2939 4.469469 TTCCTTTCCCCTTGTTCTTCAT 57.531 40.909 0.00 0.00 0.00 2.57
2846 2940 5.592587 TTCCTTTCCCCTTGTTCTTCATA 57.407 39.130 0.00 0.00 0.00 2.15
2851 2945 3.437213 TCCCCTTGTTCTTCATAGTCGA 58.563 45.455 0.00 0.00 0.00 4.20
2937 3031 3.509967 GGTGGTTGTTCTAGGATTTTGGG 59.490 47.826 0.00 0.00 0.00 4.12
2959 3053 5.648960 GGGGACATCTTTATGGTTTTTACGA 59.351 40.000 0.00 0.00 37.43 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.805945 CGGTGAACTCGCTACAGGC 60.806 63.158 0.00 0.00 37.64 4.85
23 24 0.456312 GTCGGTGAACTCGCTACAGG 60.456 60.000 0.00 0.00 0.00 4.00
24 25 0.522180 AGTCGGTGAACTCGCTACAG 59.478 55.000 0.00 0.00 0.00 2.74
25 26 0.520404 GAGTCGGTGAACTCGCTACA 59.480 55.000 0.00 0.00 36.61 2.74
26 27 0.179169 GGAGTCGGTGAACTCGCTAC 60.179 60.000 0.00 0.00 45.45 3.58
27 28 0.322277 AGGAGTCGGTGAACTCGCTA 60.322 55.000 0.00 0.00 45.45 4.26
28 29 1.179814 AAGGAGTCGGTGAACTCGCT 61.180 55.000 0.00 0.00 45.45 4.93
29 30 0.319641 AAAGGAGTCGGTGAACTCGC 60.320 55.000 0.00 0.00 45.45 5.03
30 31 1.000607 TCAAAGGAGTCGGTGAACTCG 60.001 52.381 0.00 0.00 45.45 4.18
31 32 2.814280 TCAAAGGAGTCGGTGAACTC 57.186 50.000 0.00 0.00 44.08 3.01
32 33 2.289694 CCATCAAAGGAGTCGGTGAACT 60.290 50.000 0.00 0.00 0.00 3.01
33 34 2.076863 CCATCAAAGGAGTCGGTGAAC 58.923 52.381 0.00 0.00 0.00 3.18
34 35 1.610624 GCCATCAAAGGAGTCGGTGAA 60.611 52.381 0.00 0.00 0.00 3.18
35 36 0.036388 GCCATCAAAGGAGTCGGTGA 60.036 55.000 0.00 0.00 0.00 4.02
36 37 1.026718 GGCCATCAAAGGAGTCGGTG 61.027 60.000 0.00 0.00 0.00 4.94
37 38 1.299976 GGCCATCAAAGGAGTCGGT 59.700 57.895 0.00 0.00 0.00 4.69
38 39 1.815421 CGGCCATCAAAGGAGTCGG 60.815 63.158 2.24 0.00 0.00 4.79
39 40 2.464459 GCGGCCATCAAAGGAGTCG 61.464 63.158 2.24 0.00 0.00 4.18
40 41 2.464459 CGCGGCCATCAAAGGAGTC 61.464 63.158 2.24 0.00 0.00 3.36
41 42 2.436646 CGCGGCCATCAAAGGAGT 60.437 61.111 2.24 0.00 0.00 3.85
42 43 2.436646 ACGCGGCCATCAAAGGAG 60.437 61.111 12.47 0.00 0.00 3.69
43 44 2.745884 CACGCGGCCATCAAAGGA 60.746 61.111 12.47 0.00 0.00 3.36
44 45 4.481112 GCACGCGGCCATCAAAGG 62.481 66.667 12.47 0.00 36.11 3.11
45 46 3.266230 TTGCACGCGGCCATCAAAG 62.266 57.895 12.47 0.00 43.89 2.77
46 47 3.266230 CTTGCACGCGGCCATCAAA 62.266 57.895 12.47 0.27 43.89 2.69
47 48 3.736100 CTTGCACGCGGCCATCAA 61.736 61.111 12.47 5.86 43.89 2.57
49 50 4.465512 CACTTGCACGCGGCCATC 62.466 66.667 12.47 0.00 43.89 3.51
50 51 3.892740 TACACTTGCACGCGGCCAT 62.893 57.895 12.47 0.00 43.89 4.40
51 52 3.892740 ATACACTTGCACGCGGCCA 62.893 57.895 12.47 3.51 43.89 5.36
52 53 3.095898 GATACACTTGCACGCGGCC 62.096 63.158 12.47 0.18 43.89 6.13
53 54 2.025359 GAGATACACTTGCACGCGGC 62.025 60.000 12.47 12.14 45.13 6.53
54 55 1.421410 GGAGATACACTTGCACGCGG 61.421 60.000 12.47 0.00 0.00 6.46
55 56 1.421410 GGGAGATACACTTGCACGCG 61.421 60.000 3.53 3.53 0.00 6.01
56 57 0.108138 AGGGAGATACACTTGCACGC 60.108 55.000 0.00 0.00 0.00 5.34
57 58 1.204704 TGAGGGAGATACACTTGCACG 59.795 52.381 0.00 0.00 29.26 5.34
58 59 2.898705 CTGAGGGAGATACACTTGCAC 58.101 52.381 0.00 0.00 29.26 4.57
59 60 1.208052 GCTGAGGGAGATACACTTGCA 59.792 52.381 0.00 0.00 34.02 4.08
60 61 1.484240 AGCTGAGGGAGATACACTTGC 59.516 52.381 0.00 0.00 34.03 4.01
61 62 3.055530 ACAAGCTGAGGGAGATACACTTG 60.056 47.826 0.00 0.00 39.26 3.16
62 63 3.177228 ACAAGCTGAGGGAGATACACTT 58.823 45.455 0.00 0.00 29.26 3.16
63 64 2.763448 GACAAGCTGAGGGAGATACACT 59.237 50.000 0.00 0.00 33.40 3.55
64 65 2.480416 CGACAAGCTGAGGGAGATACAC 60.480 54.545 0.00 0.00 0.00 2.90
65 66 1.751351 CGACAAGCTGAGGGAGATACA 59.249 52.381 0.00 0.00 0.00 2.29
66 67 2.025155 TCGACAAGCTGAGGGAGATAC 58.975 52.381 0.00 0.00 0.00 2.24
67 68 2.092375 TCTCGACAAGCTGAGGGAGATA 60.092 50.000 0.00 0.00 33.00 1.98
68 69 1.110442 CTCGACAAGCTGAGGGAGAT 58.890 55.000 0.00 0.00 0.00 2.75
69 70 0.038310 TCTCGACAAGCTGAGGGAGA 59.962 55.000 0.00 0.00 33.00 3.71
70 71 1.066908 GATCTCGACAAGCTGAGGGAG 59.933 57.143 0.00 0.00 33.00 4.30
71 72 1.107114 GATCTCGACAAGCTGAGGGA 58.893 55.000 0.00 0.00 33.00 4.20
72 73 0.248825 CGATCTCGACAAGCTGAGGG 60.249 60.000 0.00 0.00 43.02 4.30
73 74 0.735471 TCGATCTCGACAAGCTGAGG 59.265 55.000 0.00 0.00 44.22 3.86
85 86 0.657951 GCGCGAGTAGGTTCGATCTC 60.658 60.000 12.10 0.00 43.03 2.75
86 87 1.096386 AGCGCGAGTAGGTTCGATCT 61.096 55.000 12.10 0.00 43.03 2.75
87 88 0.248539 AAGCGCGAGTAGGTTCGATC 60.249 55.000 12.10 0.00 43.03 3.69
88 89 0.248539 GAAGCGCGAGTAGGTTCGAT 60.249 55.000 12.10 0.00 43.03 3.59
89 90 1.136147 GAAGCGCGAGTAGGTTCGA 59.864 57.895 12.10 0.00 43.03 3.71
90 91 0.862283 GAGAAGCGCGAGTAGGTTCG 60.862 60.000 12.10 0.00 46.89 3.95
91 92 0.862283 CGAGAAGCGCGAGTAGGTTC 60.862 60.000 12.10 0.55 43.92 3.62
92 93 1.136984 CGAGAAGCGCGAGTAGGTT 59.863 57.895 12.10 0.00 0.00 3.50
93 94 1.979831 GACGAGAAGCGCGAGTAGGT 61.980 60.000 12.10 0.00 46.04 3.08
94 95 1.297745 GACGAGAAGCGCGAGTAGG 60.298 63.158 12.10 0.00 46.04 3.18
95 96 0.587737 CAGACGAGAAGCGCGAGTAG 60.588 60.000 12.10 0.00 46.04 2.57
96 97 1.296755 ACAGACGAGAAGCGCGAGTA 61.297 55.000 12.10 0.00 46.04 2.59
97 98 1.296755 TACAGACGAGAAGCGCGAGT 61.297 55.000 12.10 0.00 46.04 4.18
98 99 0.028242 ATACAGACGAGAAGCGCGAG 59.972 55.000 12.10 0.00 46.04 5.03
99 100 0.027716 GATACAGACGAGAAGCGCGA 59.972 55.000 12.10 0.00 46.04 5.87
100 101 1.256284 CGATACAGACGAGAAGCGCG 61.256 60.000 0.00 0.00 46.04 6.86
101 102 1.533165 GCGATACAGACGAGAAGCGC 61.533 60.000 0.00 0.00 46.04 5.92
103 104 0.595310 GGGCGATACAGACGAGAAGC 60.595 60.000 0.00 0.00 0.00 3.86
104 105 1.025812 AGGGCGATACAGACGAGAAG 58.974 55.000 0.00 0.00 0.00 2.85
105 106 0.738975 CAGGGCGATACAGACGAGAA 59.261 55.000 0.00 0.00 0.00 2.87
106 107 1.101635 CCAGGGCGATACAGACGAGA 61.102 60.000 0.00 0.00 0.00 4.04
107 108 1.360551 CCAGGGCGATACAGACGAG 59.639 63.158 0.00 0.00 0.00 4.18
108 109 2.782222 GCCAGGGCGATACAGACGA 61.782 63.158 0.00 0.00 0.00 4.20
109 110 2.279517 GCCAGGGCGATACAGACG 60.280 66.667 0.00 0.00 0.00 4.18
124 125 1.009829 GTCACGATTCATGGTGAGCC 58.990 55.000 5.00 0.00 44.32 4.70
125 126 1.662629 CTGTCACGATTCATGGTGAGC 59.337 52.381 5.00 2.47 44.32 4.26
126 127 2.094026 TCCTGTCACGATTCATGGTGAG 60.094 50.000 5.00 0.00 44.32 3.51
127 128 1.899142 TCCTGTCACGATTCATGGTGA 59.101 47.619 0.84 0.84 42.07 4.02
128 129 2.385013 TCCTGTCACGATTCATGGTG 57.615 50.000 0.00 0.00 37.78 4.17
129 130 2.237143 ACATCCTGTCACGATTCATGGT 59.763 45.455 0.00 0.00 0.00 3.55
130 131 2.868583 GACATCCTGTCACGATTCATGG 59.131 50.000 2.48 0.00 46.22 3.66
142 143 0.908198 GGAGAAGCCTGACATCCTGT 59.092 55.000 0.00 0.00 0.00 4.00
143 144 3.776616 GGAGAAGCCTGACATCCTG 57.223 57.895 0.00 0.00 0.00 3.86
153 154 3.763897 GAGGAGATGAGATAGGAGAAGCC 59.236 52.174 0.00 0.00 0.00 4.35
154 155 4.218417 GTGAGGAGATGAGATAGGAGAAGC 59.782 50.000 0.00 0.00 0.00 3.86
155 156 5.241506 GTGTGAGGAGATGAGATAGGAGAAG 59.758 48.000 0.00 0.00 0.00 2.85
156 157 5.136828 GTGTGAGGAGATGAGATAGGAGAA 58.863 45.833 0.00 0.00 0.00 2.87
157 158 4.166919 TGTGTGAGGAGATGAGATAGGAGA 59.833 45.833 0.00 0.00 0.00 3.71
158 159 4.468713 TGTGTGAGGAGATGAGATAGGAG 58.531 47.826 0.00 0.00 0.00 3.69
159 160 4.468713 CTGTGTGAGGAGATGAGATAGGA 58.531 47.826 0.00 0.00 0.00 2.94
160 161 3.005684 GCTGTGTGAGGAGATGAGATAGG 59.994 52.174 0.00 0.00 0.00 2.57
161 162 3.005684 GGCTGTGTGAGGAGATGAGATAG 59.994 52.174 0.00 0.00 0.00 2.08
162 163 2.961741 GGCTGTGTGAGGAGATGAGATA 59.038 50.000 0.00 0.00 0.00 1.98
163 164 1.761784 GGCTGTGTGAGGAGATGAGAT 59.238 52.381 0.00 0.00 0.00 2.75
164 165 1.189752 GGCTGTGTGAGGAGATGAGA 58.810 55.000 0.00 0.00 0.00 3.27
165 166 0.179116 CGGCTGTGTGAGGAGATGAG 60.179 60.000 0.00 0.00 0.00 2.90
166 167 1.893062 CGGCTGTGTGAGGAGATGA 59.107 57.895 0.00 0.00 0.00 2.92
167 168 1.812922 GCGGCTGTGTGAGGAGATG 60.813 63.158 0.00 0.00 0.00 2.90
168 169 2.581354 GCGGCTGTGTGAGGAGAT 59.419 61.111 0.00 0.00 0.00 2.75
169 170 4.056125 CGCGGCTGTGTGAGGAGA 62.056 66.667 0.00 0.00 0.00 3.71
214 215 3.673956 TAACATGGGTGCCGAGCGG 62.674 63.158 4.20 4.20 38.57 5.52
215 216 2.125310 TAACATGGGTGCCGAGCG 60.125 61.111 0.00 0.00 0.00 5.03
216 217 2.472909 GCTAACATGGGTGCCGAGC 61.473 63.158 0.00 0.00 0.00 5.03
217 218 2.173669 CGCTAACATGGGTGCCGAG 61.174 63.158 0.00 0.00 0.00 4.63
218 219 2.125310 CGCTAACATGGGTGCCGA 60.125 61.111 0.00 0.00 0.00 5.54
219 220 2.435938 ACGCTAACATGGGTGCCG 60.436 61.111 0.00 0.00 0.00 5.69
220 221 0.676782 AAGACGCTAACATGGGTGCC 60.677 55.000 0.00 0.00 33.20 5.01
221 222 0.727398 GAAGACGCTAACATGGGTGC 59.273 55.000 0.00 0.00 33.20 5.01
222 223 2.386661 AGAAGACGCTAACATGGGTG 57.613 50.000 0.00 0.00 33.20 4.61
223 224 3.418684 AAAGAAGACGCTAACATGGGT 57.581 42.857 0.00 0.00 35.79 4.51
224 225 4.455877 AGAAAAAGAAGACGCTAACATGGG 59.544 41.667 0.00 0.00 0.00 4.00
225 226 5.613358 AGAAAAAGAAGACGCTAACATGG 57.387 39.130 0.00 0.00 0.00 3.66
226 227 6.080406 GGAAGAAAAAGAAGACGCTAACATG 58.920 40.000 0.00 0.00 0.00 3.21
227 228 5.763204 TGGAAGAAAAAGAAGACGCTAACAT 59.237 36.000 0.00 0.00 0.00 2.71
228 229 5.120399 TGGAAGAAAAAGAAGACGCTAACA 58.880 37.500 0.00 0.00 0.00 2.41
229 230 5.465724 TCTGGAAGAAAAAGAAGACGCTAAC 59.534 40.000 0.00 0.00 42.31 2.34
230 231 5.607477 TCTGGAAGAAAAAGAAGACGCTAA 58.393 37.500 0.00 0.00 42.31 3.09
231 232 5.209818 TCTGGAAGAAAAAGAAGACGCTA 57.790 39.130 0.00 0.00 42.31 4.26
232 233 4.073293 TCTGGAAGAAAAAGAAGACGCT 57.927 40.909 0.00 0.00 42.31 5.07
250 251 0.174845 TACGTCGCCCCAGAATTCTG 59.825 55.000 25.75 25.75 43.40 3.02
251 252 0.175073 GTACGTCGCCCCAGAATTCT 59.825 55.000 0.88 0.88 0.00 2.40
252 253 0.808847 GGTACGTCGCCCCAGAATTC 60.809 60.000 0.00 0.00 0.00 2.17
253 254 1.219935 GGTACGTCGCCCCAGAATT 59.780 57.895 0.00 0.00 0.00 2.17
254 255 1.335132 ATGGTACGTCGCCCCAGAAT 61.335 55.000 9.10 0.00 0.00 2.40
255 256 0.683828 TATGGTACGTCGCCCCAGAA 60.684 55.000 9.10 0.00 0.00 3.02
256 257 1.076850 TATGGTACGTCGCCCCAGA 60.077 57.895 9.10 2.36 0.00 3.86
257 258 1.066918 GTATGGTACGTCGCCCCAG 59.933 63.158 9.10 0.00 0.00 4.45
258 259 2.425569 GGTATGGTACGTCGCCCCA 61.426 63.158 5.99 5.99 0.00 4.96
259 260 0.823356 TAGGTATGGTACGTCGCCCC 60.823 60.000 0.00 0.00 0.00 5.80
260 261 0.312102 GTAGGTATGGTACGTCGCCC 59.688 60.000 0.00 0.00 0.00 6.13
261 262 1.265365 GAGTAGGTATGGTACGTCGCC 59.735 57.143 0.00 0.00 0.00 5.54
262 263 1.070309 CGAGTAGGTATGGTACGTCGC 60.070 57.143 0.00 0.00 0.00 5.19
263 264 1.070309 GCGAGTAGGTATGGTACGTCG 60.070 57.143 0.00 0.00 0.00 5.12
264 265 1.070309 CGCGAGTAGGTATGGTACGTC 60.070 57.143 0.00 0.00 0.00 4.34
265 266 0.940126 CGCGAGTAGGTATGGTACGT 59.060 55.000 0.00 0.00 0.00 3.57
266 267 0.385223 GCGCGAGTAGGTATGGTACG 60.385 60.000 12.10 0.00 0.00 3.67
267 268 0.950116 AGCGCGAGTAGGTATGGTAC 59.050 55.000 12.10 0.00 0.00 3.34
268 269 0.949397 CAGCGCGAGTAGGTATGGTA 59.051 55.000 12.10 0.00 0.00 3.25
269 270 0.750546 TCAGCGCGAGTAGGTATGGT 60.751 55.000 12.10 0.00 0.00 3.55
270 271 0.039978 CTCAGCGCGAGTAGGTATGG 60.040 60.000 12.10 0.00 36.94 2.74
271 272 0.945099 TCTCAGCGCGAGTAGGTATG 59.055 55.000 22.33 5.34 42.88 2.39
272 273 1.898902 ATCTCAGCGCGAGTAGGTAT 58.101 50.000 22.33 10.33 42.88 2.73
273 274 1.676746 AATCTCAGCGCGAGTAGGTA 58.323 50.000 22.33 8.82 42.88 3.08
274 275 1.604755 CTAATCTCAGCGCGAGTAGGT 59.395 52.381 22.33 0.00 42.88 3.08
275 276 1.604755 ACTAATCTCAGCGCGAGTAGG 59.395 52.381 22.33 15.33 42.88 3.18
276 277 3.665848 GCTACTAATCTCAGCGCGAGTAG 60.666 52.174 22.33 16.11 42.88 2.57
277 278 2.223611 GCTACTAATCTCAGCGCGAGTA 59.776 50.000 22.33 4.97 42.88 2.59
278 279 1.002251 GCTACTAATCTCAGCGCGAGT 60.002 52.381 22.33 3.81 42.88 4.18
279 280 1.680668 GCTACTAATCTCAGCGCGAG 58.319 55.000 12.10 18.94 43.80 5.03
280 281 3.847621 GCTACTAATCTCAGCGCGA 57.152 52.632 12.10 1.16 0.00 5.87
284 285 6.830114 ATGTTTAACGCTACTAATCTCAGC 57.170 37.500 0.00 0.00 0.00 4.26
285 286 7.113124 CGGTATGTTTAACGCTACTAATCTCAG 59.887 40.741 7.31 0.00 30.66 3.35
286 287 6.914215 CGGTATGTTTAACGCTACTAATCTCA 59.086 38.462 7.31 0.00 30.66 3.27
287 288 6.361748 CCGGTATGTTTAACGCTACTAATCTC 59.638 42.308 0.00 0.00 37.20 2.75
288 289 6.211515 CCGGTATGTTTAACGCTACTAATCT 58.788 40.000 0.00 0.00 37.20 2.40
289 290 5.107722 GCCGGTATGTTTAACGCTACTAATC 60.108 44.000 1.90 0.00 37.20 1.75
290 291 4.746611 GCCGGTATGTTTAACGCTACTAAT 59.253 41.667 1.90 0.00 37.20 1.73
291 292 4.111916 GCCGGTATGTTTAACGCTACTAA 58.888 43.478 1.90 0.00 37.20 2.24
292 293 3.705604 GCCGGTATGTTTAACGCTACTA 58.294 45.455 1.90 0.00 37.20 1.82
293 294 2.543641 GCCGGTATGTTTAACGCTACT 58.456 47.619 1.90 0.00 37.20 2.57
294 295 1.256117 CGCCGGTATGTTTAACGCTAC 59.744 52.381 1.90 0.00 37.20 3.58
295 296 1.133982 TCGCCGGTATGTTTAACGCTA 59.866 47.619 1.90 0.00 37.20 4.26
296 297 0.108709 TCGCCGGTATGTTTAACGCT 60.109 50.000 1.90 0.00 37.20 5.07
297 298 0.720590 TTCGCCGGTATGTTTAACGC 59.279 50.000 1.90 0.00 37.20 4.84
298 299 1.060986 GGTTCGCCGGTATGTTTAACG 59.939 52.381 1.90 0.00 38.28 3.18
299 300 2.094734 CAGGTTCGCCGGTATGTTTAAC 59.905 50.000 1.90 0.00 43.66 2.01
300 301 2.348660 CAGGTTCGCCGGTATGTTTAA 58.651 47.619 1.90 0.00 43.66 1.52
301 302 2.008045 GCAGGTTCGCCGGTATGTTTA 61.008 52.381 1.90 0.00 43.66 2.01
302 303 1.303091 GCAGGTTCGCCGGTATGTTT 61.303 55.000 1.90 0.00 43.66 2.83
303 304 1.743995 GCAGGTTCGCCGGTATGTT 60.744 57.895 1.90 0.00 43.66 2.71
304 305 2.125269 GCAGGTTCGCCGGTATGT 60.125 61.111 1.90 0.00 43.66 2.29
305 306 2.173669 CAGCAGGTTCGCCGGTATG 61.174 63.158 1.90 0.00 43.66 2.39
306 307 2.186903 CAGCAGGTTCGCCGGTAT 59.813 61.111 1.90 0.00 43.66 2.73
307 308 4.752879 GCAGCAGGTTCGCCGGTA 62.753 66.667 1.90 0.00 43.66 4.02
311 312 3.426568 GTGAGCAGCAGGTTCGCC 61.427 66.667 0.00 0.00 31.77 5.54
312 313 3.782244 CGTGAGCAGCAGGTTCGC 61.782 66.667 0.00 0.00 34.30 4.70
313 314 2.356313 ACGTGAGCAGCAGGTTCG 60.356 61.111 0.00 5.62 42.56 3.95
316 317 2.356313 CGAACGTGAGCAGCAGGT 60.356 61.111 0.00 0.00 46.77 4.00
317 318 2.356313 ACGAACGTGAGCAGCAGG 60.356 61.111 0.00 0.00 38.32 4.85
326 327 1.005347 GTTGAGAACACCACGAACGTG 60.005 52.381 18.51 18.51 45.02 4.49
327 328 1.283736 GTTGAGAACACCACGAACGT 58.716 50.000 0.00 0.00 0.00 3.99
328 329 0.580104 GGTTGAGAACACCACGAACG 59.420 55.000 0.00 0.00 0.00 3.95
329 330 1.949465 AGGTTGAGAACACCACGAAC 58.051 50.000 0.00 0.00 0.00 3.95
330 331 2.702592 AAGGTTGAGAACACCACGAA 57.297 45.000 0.00 0.00 0.00 3.85
331 332 2.702592 AAAGGTTGAGAACACCACGA 57.297 45.000 0.00 0.00 0.00 4.35
332 333 2.032924 GGAAAAGGTTGAGAACACCACG 59.967 50.000 0.00 0.00 0.00 4.94
333 334 2.032924 CGGAAAAGGTTGAGAACACCAC 59.967 50.000 0.00 0.00 0.00 4.16
334 335 2.294074 CGGAAAAGGTTGAGAACACCA 58.706 47.619 0.00 0.00 0.00 4.17
335 336 1.607148 CCGGAAAAGGTTGAGAACACC 59.393 52.381 0.00 0.00 0.00 4.16
336 337 1.001706 GCCGGAAAAGGTTGAGAACAC 60.002 52.381 5.05 0.00 0.00 3.32
337 338 1.314730 GCCGGAAAAGGTTGAGAACA 58.685 50.000 5.05 0.00 0.00 3.18
338 339 0.237498 CGCCGGAAAAGGTTGAGAAC 59.763 55.000 5.05 0.00 0.00 3.01
339 340 0.107081 TCGCCGGAAAAGGTTGAGAA 59.893 50.000 5.05 0.00 0.00 2.87
340 341 0.601841 GTCGCCGGAAAAGGTTGAGA 60.602 55.000 5.05 0.00 0.00 3.27
341 342 1.574702 GGTCGCCGGAAAAGGTTGAG 61.575 60.000 5.05 0.00 0.00 3.02
342 343 1.598685 GGTCGCCGGAAAAGGTTGA 60.599 57.895 5.05 0.00 0.00 3.18
343 344 2.951458 GGTCGCCGGAAAAGGTTG 59.049 61.111 5.05 0.00 0.00 3.77
344 345 2.667199 CGGTCGCCGGAAAAGGTT 60.667 61.111 5.05 0.00 44.15 3.50
362 363 3.795499 AAACCACCCACGACGACGG 62.795 63.158 12.58 2.28 44.46 4.79
363 364 0.597118 TAAAACCACCCACGACGACG 60.597 55.000 5.58 5.58 45.75 5.12
364 365 1.728425 GATAAAACCACCCACGACGAC 59.272 52.381 0.00 0.00 0.00 4.34
365 366 1.669502 CGATAAAACCACCCACGACGA 60.670 52.381 0.00 0.00 0.00 4.20
366 367 0.717224 CGATAAAACCACCCACGACG 59.283 55.000 0.00 0.00 0.00 5.12
367 368 2.083167 TCGATAAAACCACCCACGAC 57.917 50.000 0.00 0.00 0.00 4.34
368 369 3.337694 AATCGATAAAACCACCCACGA 57.662 42.857 0.00 0.00 0.00 4.35
369 370 5.294799 TGATTAATCGATAAAACCACCCACG 59.705 40.000 10.80 0.00 0.00 4.94
370 371 6.094325 TGTGATTAATCGATAAAACCACCCAC 59.906 38.462 12.91 6.87 0.00 4.61
371 372 6.181190 TGTGATTAATCGATAAAACCACCCA 58.819 36.000 12.91 0.00 0.00 4.51
372 373 6.687081 TGTGATTAATCGATAAAACCACCC 57.313 37.500 12.91 0.00 0.00 4.61
373 374 7.925993 TCATGTGATTAATCGATAAAACCACC 58.074 34.615 12.91 0.53 0.00 4.61
374 375 9.950680 AATCATGTGATTAATCGATAAAACCAC 57.049 29.630 10.80 9.86 42.48 4.16
388 389 9.618890 CCTTCCTCTTTCTTAATCATGTGATTA 57.381 33.333 10.56 10.56 42.48 1.75
389 390 8.331740 TCCTTCCTCTTTCTTAATCATGTGATT 58.668 33.333 12.41 12.41 45.77 2.57
390 391 7.865820 TCCTTCCTCTTTCTTAATCATGTGAT 58.134 34.615 0.00 0.00 36.07 3.06
391 392 7.180946 TCTCCTTCCTCTTTCTTAATCATGTGA 59.819 37.037 0.00 0.00 0.00 3.58
392 393 7.334090 TCTCCTTCCTCTTTCTTAATCATGTG 58.666 38.462 0.00 0.00 0.00 3.21
393 394 7.502060 TCTCCTTCCTCTTTCTTAATCATGT 57.498 36.000 0.00 0.00 0.00 3.21
394 395 6.482973 GCTCTCCTTCCTCTTTCTTAATCATG 59.517 42.308 0.00 0.00 0.00 3.07
395 396 6.409120 GGCTCTCCTTCCTCTTTCTTAATCAT 60.409 42.308 0.00 0.00 0.00 2.45
396 397 5.104735 GGCTCTCCTTCCTCTTTCTTAATCA 60.105 44.000 0.00 0.00 0.00 2.57
397 398 5.364778 GGCTCTCCTTCCTCTTTCTTAATC 58.635 45.833 0.00 0.00 0.00 1.75
398 399 4.165180 GGGCTCTCCTTCCTCTTTCTTAAT 59.835 45.833 0.00 0.00 0.00 1.40
399 400 3.519913 GGGCTCTCCTTCCTCTTTCTTAA 59.480 47.826 0.00 0.00 0.00 1.85
400 401 3.108376 GGGCTCTCCTTCCTCTTTCTTA 58.892 50.000 0.00 0.00 0.00 2.10
401 402 1.912731 GGGCTCTCCTTCCTCTTTCTT 59.087 52.381 0.00 0.00 0.00 2.52
402 403 1.080329 AGGGCTCTCCTTCCTCTTTCT 59.920 52.381 0.00 0.00 45.47 2.52
403 404 1.578897 AGGGCTCTCCTTCCTCTTTC 58.421 55.000 0.00 0.00 45.47 2.62
404 405 3.826293 AGGGCTCTCCTTCCTCTTT 57.174 52.632 0.00 0.00 45.47 2.52
413 414 3.497584 CCATTTCTATCCAAGGGCTCTCC 60.498 52.174 0.00 0.00 0.00 3.71
414 415 3.392616 TCCATTTCTATCCAAGGGCTCTC 59.607 47.826 0.00 0.00 0.00 3.20
415 416 3.137360 GTCCATTTCTATCCAAGGGCTCT 59.863 47.826 0.00 0.00 0.00 4.09
416 417 3.481453 GTCCATTTCTATCCAAGGGCTC 58.519 50.000 0.00 0.00 0.00 4.70
417 418 2.158755 CGTCCATTTCTATCCAAGGGCT 60.159 50.000 0.00 0.00 0.00 5.19
418 419 2.222027 CGTCCATTTCTATCCAAGGGC 58.778 52.381 0.00 0.00 0.00 5.19
419 420 2.851195 CCGTCCATTTCTATCCAAGGG 58.149 52.381 0.00 0.00 0.00 3.95
420 421 2.222027 GCCGTCCATTTCTATCCAAGG 58.778 52.381 0.00 0.00 0.00 3.61
421 422 2.874701 CTGCCGTCCATTTCTATCCAAG 59.125 50.000 0.00 0.00 0.00 3.61
422 423 2.503765 TCTGCCGTCCATTTCTATCCAA 59.496 45.455 0.00 0.00 0.00 3.53
423 424 2.115427 TCTGCCGTCCATTTCTATCCA 58.885 47.619 0.00 0.00 0.00 3.41
424 425 2.910688 TCTGCCGTCCATTTCTATCC 57.089 50.000 0.00 0.00 0.00 2.59
425 426 5.757850 AAAATCTGCCGTCCATTTCTATC 57.242 39.130 0.00 0.00 0.00 2.08
426 427 7.823745 ATTAAAATCTGCCGTCCATTTCTAT 57.176 32.000 0.00 0.00 0.00 1.98
427 428 7.227910 GGTATTAAAATCTGCCGTCCATTTCTA 59.772 37.037 0.00 0.00 0.00 2.10
428 429 6.039382 GGTATTAAAATCTGCCGTCCATTTCT 59.961 38.462 0.00 0.00 0.00 2.52
429 430 6.183360 TGGTATTAAAATCTGCCGTCCATTTC 60.183 38.462 0.00 0.00 0.00 2.17
430 431 5.654650 TGGTATTAAAATCTGCCGTCCATTT 59.345 36.000 0.00 0.00 0.00 2.32
431 432 5.197451 TGGTATTAAAATCTGCCGTCCATT 58.803 37.500 0.00 0.00 0.00 3.16
432 433 4.787551 TGGTATTAAAATCTGCCGTCCAT 58.212 39.130 0.00 0.00 0.00 3.41
433 434 4.223556 TGGTATTAAAATCTGCCGTCCA 57.776 40.909 0.00 0.00 0.00 4.02
434 435 4.396790 TGTTGGTATTAAAATCTGCCGTCC 59.603 41.667 0.00 0.00 0.00 4.79
435 436 5.554822 TGTTGGTATTAAAATCTGCCGTC 57.445 39.130 0.00 0.00 0.00 4.79
436 437 4.142469 GCTGTTGGTATTAAAATCTGCCGT 60.142 41.667 0.00 0.00 0.00 5.68
437 438 4.142491 TGCTGTTGGTATTAAAATCTGCCG 60.142 41.667 0.00 0.00 0.00 5.69
438 439 5.102313 GTGCTGTTGGTATTAAAATCTGCC 58.898 41.667 0.00 0.00 0.00 4.85
439 440 5.102313 GGTGCTGTTGGTATTAAAATCTGC 58.898 41.667 0.00 0.00 0.00 4.26
440 441 6.071952 ACAGGTGCTGTTGGTATTAAAATCTG 60.072 38.462 0.00 0.00 42.59 2.90
441 442 6.010219 ACAGGTGCTGTTGGTATTAAAATCT 58.990 36.000 0.00 0.00 42.59 2.40
442 443 6.267496 ACAGGTGCTGTTGGTATTAAAATC 57.733 37.500 0.00 0.00 42.59 2.17
443 444 6.717540 TGTACAGGTGCTGTTGGTATTAAAAT 59.282 34.615 0.00 0.00 42.59 1.82
444 445 6.062749 TGTACAGGTGCTGTTGGTATTAAAA 58.937 36.000 0.00 0.00 42.59 1.52
445 446 5.622180 TGTACAGGTGCTGTTGGTATTAAA 58.378 37.500 0.00 0.00 42.59 1.52
446 447 5.221762 ACTGTACAGGTGCTGTTGGTATTAA 60.222 40.000 26.12 0.00 42.59 1.40
447 448 4.285003 ACTGTACAGGTGCTGTTGGTATTA 59.715 41.667 26.12 0.00 42.59 0.98
448 449 3.072476 ACTGTACAGGTGCTGTTGGTATT 59.928 43.478 26.12 0.00 42.59 1.89
449 450 2.637872 ACTGTACAGGTGCTGTTGGTAT 59.362 45.455 26.12 0.00 42.59 2.73
450 451 2.043992 ACTGTACAGGTGCTGTTGGTA 58.956 47.619 26.12 0.00 42.59 3.25
451 452 0.837272 ACTGTACAGGTGCTGTTGGT 59.163 50.000 26.12 0.00 42.59 3.67
452 453 2.806244 GTTACTGTACAGGTGCTGTTGG 59.194 50.000 26.12 0.00 42.59 3.77
453 454 3.728845 AGTTACTGTACAGGTGCTGTTG 58.271 45.455 26.12 0.00 42.59 3.33
454 455 4.342951 TGTAGTTACTGTACAGGTGCTGTT 59.657 41.667 26.12 6.49 42.59 3.16
456 457 4.235360 GTGTAGTTACTGTACAGGTGCTG 58.765 47.826 26.12 1.76 37.52 4.41
457 458 3.057736 CGTGTAGTTACTGTACAGGTGCT 60.058 47.826 26.12 20.20 33.53 4.40
458 459 3.058016 TCGTGTAGTTACTGTACAGGTGC 60.058 47.826 26.12 14.74 37.48 5.01
459 460 4.214971 AGTCGTGTAGTTACTGTACAGGTG 59.785 45.833 26.12 3.32 37.48 4.00
460 461 4.214971 CAGTCGTGTAGTTACTGTACAGGT 59.785 45.833 26.12 14.18 37.48 4.00
461 462 4.720090 CAGTCGTGTAGTTACTGTACAGG 58.280 47.826 26.12 9.07 36.66 4.00
462 463 4.156915 GCAGTCGTGTAGTTACTGTACAG 58.843 47.826 21.44 21.44 42.10 2.74
463 464 3.565063 TGCAGTCGTGTAGTTACTGTACA 59.435 43.478 0.00 0.00 42.10 2.90
464 465 4.083643 TCTGCAGTCGTGTAGTTACTGTAC 60.084 45.833 14.67 0.00 42.10 2.90
465 466 4.067192 TCTGCAGTCGTGTAGTTACTGTA 58.933 43.478 14.67 0.00 42.10 2.74
466 467 2.882761 TCTGCAGTCGTGTAGTTACTGT 59.117 45.455 14.67 0.00 42.10 3.55
467 468 3.235195 GTCTGCAGTCGTGTAGTTACTG 58.765 50.000 14.67 0.00 42.80 2.74
468 469 2.095869 CGTCTGCAGTCGTGTAGTTACT 60.096 50.000 22.63 0.00 37.64 2.24
469 470 2.240040 CGTCTGCAGTCGTGTAGTTAC 58.760 52.381 22.63 5.13 37.64 2.50
470 471 2.606717 CGTCTGCAGTCGTGTAGTTA 57.393 50.000 22.63 0.00 37.64 2.24
471 472 3.474007 CGTCTGCAGTCGTGTAGTT 57.526 52.632 22.63 0.00 37.64 2.24
725 726 3.138798 GTCGTCGCTAGGCCTCCA 61.139 66.667 9.68 0.00 0.00 3.86
726 727 4.253257 CGTCGTCGCTAGGCCTCC 62.253 72.222 9.68 0.00 0.00 4.30
730 731 4.883300 CCGTCGTCGTCGCTAGGC 62.883 72.222 6.36 0.00 36.96 3.93
763 813 2.433664 CGGAAACTAAGGCGCCGT 60.434 61.111 23.20 22.12 37.35 5.68
775 825 4.629523 GGCGGTGGTGGTCGGAAA 62.630 66.667 0.00 0.00 0.00 3.13
816 866 2.862597 AGAGATCAGAAGAGGTAGGGGT 59.137 50.000 0.00 0.00 0.00 4.95
920 981 9.974980 TGTGAAAGAGAAATTATTTGGGTAAAC 57.025 29.630 0.00 0.00 0.00 2.01
1049 1110 1.372499 TCGCCGACTGAAAGGTTCG 60.372 57.895 0.00 0.00 39.30 3.95
1076 1137 1.202463 CGGCAAAGATCTCATCGGAGT 60.202 52.381 0.00 0.00 42.05 3.85
1144 1205 1.219124 CGTATCTGCCTGTGCTGGT 59.781 57.895 0.00 0.00 38.71 4.00
1199 1260 2.517959 CCTCAAAGATGGCCTTGACAA 58.482 47.619 3.32 0.00 34.79 3.18
1595 1656 0.040514 TTCAATTTCGTGCAGCGTGG 60.041 50.000 8.22 0.00 42.13 4.94
1703 1764 2.985139 GCTGCAGCAAGAAGATGTTTTC 59.015 45.455 33.36 0.00 41.59 2.29
1707 1768 1.166129 CAGCTGCAGCAAGAAGATGT 58.834 50.000 38.24 13.55 45.16 3.06
1713 1774 1.449070 CCGATCAGCTGCAGCAAGA 60.449 57.895 38.24 32.84 45.16 3.02
1723 1784 1.532868 GTCCAATGCATACCGATCAGC 59.467 52.381 0.00 0.00 0.00 4.26
1725 1786 2.254546 GGTCCAATGCATACCGATCA 57.745 50.000 0.00 0.00 0.00 2.92
1755 1816 1.605232 CACAACTTCTGAGCACATGCA 59.395 47.619 6.64 0.00 45.16 3.96
1782 1843 1.129879 CAACCGTATCGACCGACACG 61.130 60.000 15.16 15.16 43.66 4.49
1790 1851 1.590525 GCATCCGCAACCGTATCGA 60.591 57.895 0.00 0.00 38.36 3.59
1791 1852 1.151777 AAGCATCCGCAACCGTATCG 61.152 55.000 0.00 0.00 42.27 2.92
2034 2095 6.040054 AGCCCAAAATATCATAAAACCGTACC 59.960 38.462 0.00 0.00 0.00 3.34
2237 2298 1.508632 GTGCAGAACCGAAAGTAGCA 58.491 50.000 0.00 0.00 0.00 3.49
2263 2324 0.694771 ACAGTGTGCACATCCAGGAT 59.305 50.000 24.69 0.00 0.00 3.24
2368 2431 7.082972 AGATAGTTTATAAGGGACCATGGAGT 58.917 38.462 21.47 0.00 0.00 3.85
2400 2463 9.823647 TTTTCATTGCAAAACCAAACTTATAGA 57.176 25.926 1.71 0.00 0.00 1.98
2845 2939 2.156891 GCACGTGCTTCATTTTCGACTA 59.843 45.455 32.55 0.00 38.21 2.59
2846 2940 1.069906 GCACGTGCTTCATTTTCGACT 60.070 47.619 32.55 0.00 38.21 4.18
2851 2945 0.598065 GAGGGCACGTGCTTCATTTT 59.402 50.000 36.84 16.20 41.70 1.82
2889 2983 2.496070 TCCCAATCTGGTGTAGACTTCG 59.504 50.000 0.00 0.00 38.49 3.79
2937 3031 9.072294 CATTTCGTAAAAACCATAAAGATGTCC 57.928 33.333 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.