Multiple sequence alignment - TraesCS7B01G151300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G151300 chr7B 100.000 4675 0 0 1 4675 201166902 201162228 0.000000e+00 8634.0
1 TraesCS7B01G151300 chr7B 90.816 196 15 3 4269 4463 716683193 716683386 4.640000e-65 259.0
2 TraesCS7B01G151300 chr7B 91.429 140 11 1 4144 4283 579349520 579349382 1.720000e-44 191.0
3 TraesCS7B01G151300 chr7B 91.852 135 10 1 4138 4272 683148475 683148342 2.220000e-43 187.0
4 TraesCS7B01G151300 chr7B 96.739 92 2 1 4584 4675 239625134 239625044 8.100000e-33 152.0
5 TraesCS7B01G151300 chr7A 90.296 2164 140 29 1 2104 242061274 242059121 0.000000e+00 2769.0
6 TraesCS7B01G151300 chr7A 90.652 1166 57 17 2867 4016 242058036 242056907 0.000000e+00 1502.0
7 TraesCS7B01G151300 chr7A 82.888 374 36 16 2155 2509 242059052 242058688 1.260000e-80 311.0
8 TraesCS7B01G151300 chr7A 93.846 130 7 1 4144 4273 231553628 231553500 1.330000e-45 195.0
9 TraesCS7B01G151300 chr7A 92.523 107 7 1 4476 4581 242056519 242056413 8.100000e-33 152.0
10 TraesCS7B01G151300 chr7A 94.872 78 4 0 3964 4041 242056752 242056675 6.350000e-24 122.0
11 TraesCS7B01G151300 chr7A 93.333 75 5 0 3971 4045 242056894 242056820 1.380000e-20 111.0
12 TraesCS7B01G151300 chr7D 94.390 1640 64 8 1 1613 229969729 229968091 0.000000e+00 2494.0
13 TraesCS7B01G151300 chr7D 91.060 783 46 14 3271 4044 229965978 229965211 0.000000e+00 1037.0
14 TraesCS7B01G151300 chr7D 84.967 1051 76 39 1524 2544 229968099 229967101 0.000000e+00 990.0
15 TraesCS7B01G151300 chr7D 89.723 613 34 13 2608 3207 229966797 229966201 0.000000e+00 756.0
16 TraesCS7B01G151300 chr7D 95.413 109 3 2 4476 4582 229965036 229964928 6.220000e-39 172.0
17 TraesCS7B01G151300 chr7D 93.182 88 3 1 4054 4141 229965165 229965081 4.910000e-25 126.0
18 TraesCS7B01G151300 chr7D 97.143 35 1 0 2573 2607 229966886 229966852 5.050000e-05 60.2
19 TraesCS7B01G151300 chr6B 93.617 188 12 0 4277 4464 213152375 213152562 9.900000e-72 281.0
20 TraesCS7B01G151300 chr6B 90.863 197 16 2 4259 4454 63256342 63256537 3.590000e-66 263.0
21 TraesCS7B01G151300 chr6B 92.029 138 9 2 4139 4276 503545619 503545754 4.770000e-45 193.0
22 TraesCS7B01G151300 chr3B 92.632 190 12 2 4276 4464 18138167 18137979 5.960000e-69 272.0
23 TraesCS7B01G151300 chr3B 94.350 177 10 0 4282 4458 787483716 787483540 5.960000e-69 272.0
24 TraesCS7B01G151300 chr3B 96.739 92 2 1 4584 4675 286007277 286007367 8.100000e-33 152.0
25 TraesCS7B01G151300 chr3B 96.739 92 2 1 4584 4675 641693504 641693594 8.100000e-33 152.0
26 TraesCS7B01G151300 chr3B 88.608 79 7 2 4189 4266 651565939 651566016 1.380000e-15 95.3
27 TraesCS7B01G151300 chr5B 92.553 188 14 0 4277 4464 647874991 647874804 2.140000e-68 270.0
28 TraesCS7B01G151300 chr5B 91.971 137 8 3 4144 4279 30868230 30868096 6.180000e-44 189.0
29 TraesCS7B01G151300 chr5B 96.739 92 2 1 4584 4675 223746007 223746097 8.100000e-33 152.0
30 TraesCS7B01G151300 chr4A 91.667 192 15 1 4276 4467 662621176 662620986 9.970000e-67 265.0
31 TraesCS7B01G151300 chr4A 91.282 195 14 3 4273 4466 646994829 646994637 3.590000e-66 263.0
32 TraesCS7B01G151300 chr2A 92.021 188 15 0 4277 4464 72943259 72943072 9.970000e-67 265.0
33 TraesCS7B01G151300 chr2A 91.912 136 9 2 4141 4275 74146368 74146234 6.180000e-44 189.0
34 TraesCS7B01G151300 chr1B 92.701 137 9 1 4140 4276 642926696 642926831 3.690000e-46 196.0
35 TraesCS7B01G151300 chr1B 96.739 92 2 1 4584 4675 571357034 571357124 8.100000e-33 152.0
36 TraesCS7B01G151300 chr1B 95.652 92 3 1 4584 4675 393266012 393266102 3.770000e-31 147.0
37 TraesCS7B01G151300 chr1B 95.652 92 3 1 4584 4675 638440897 638440807 3.770000e-31 147.0
38 TraesCS7B01G151300 chr1B 80.769 156 25 3 1031 1182 17573305 17573151 2.960000e-22 117.0
39 TraesCS7B01G151300 chr3D 93.130 131 8 1 4144 4274 588394885 588394756 1.720000e-44 191.0
40 TraesCS7B01G151300 chr4B 90.780 141 11 2 4137 4277 459944960 459945098 2.220000e-43 187.0
41 TraesCS7B01G151300 chr4B 95.652 92 3 1 4584 4675 627263366 627263456 3.770000e-31 147.0
42 TraesCS7B01G151300 chr4D 95.652 92 3 1 4584 4675 24859337 24859247 3.770000e-31 147.0
43 TraesCS7B01G151300 chr4D 82.500 80 14 0 1716 1795 345432607 345432528 2.330000e-08 71.3
44 TraesCS7B01G151300 chr6D 95.455 44 2 0 1752 1795 377542149 377542106 2.330000e-08 71.3
45 TraesCS7B01G151300 chr6A 91.667 48 4 0 1748 1795 601669873 601669826 3.020000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G151300 chr7B 201162228 201166902 4674 True 8634.000000 8634 100.000000 1 4675 1 chr7B.!!$R1 4674
1 TraesCS7B01G151300 chr7A 242056413 242061274 4861 True 827.833333 2769 90.760667 1 4581 6 chr7A.!!$R2 4580
2 TraesCS7B01G151300 chr7D 229964928 229969729 4801 True 805.028571 2494 92.268286 1 4582 7 chr7D.!!$R1 4581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 441 0.471971 CACCCCTACTCCATCCCGAT 60.472 60.0 0.0 0.0 0.00 4.18 F
1010 1072 0.108089 GTCGCCTCCCTCTTTTCCTC 60.108 60.0 0.0 0.0 0.00 3.71 F
2240 2432 0.032615 TGGCTTTTGTGTGGACCCTT 60.033 50.0 0.0 0.0 0.00 3.95 F
2771 3591 0.250166 CCCACGGAGTTCGAAGGTTT 60.250 55.0 0.0 0.0 41.61 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 2207 0.105224 AACACATCAACGACGGGACA 59.895 50.000 0.00 0.0 0.00 4.02 R
2932 3762 0.319297 CAAGCAGAGGCAGGCAAAAC 60.319 55.000 0.00 0.0 44.61 2.43 R
3514 4525 1.135315 CGTCCCGGTAATTGTTCTCGA 60.135 52.381 0.00 0.0 0.00 4.04 R
4253 5511 0.038744 AGTACTTCCTCCGTCCGGAA 59.961 55.000 5.23 0.0 44.66 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.442076 TCCCTCTCCTTTTCCTAGTCAC 58.558 50.000 0.00 0.00 0.00 3.67
134 136 4.211164 TGACACTCGCATGTTCTTGTAAAG 59.789 41.667 0.00 0.00 37.99 1.85
135 137 4.127171 ACACTCGCATGTTCTTGTAAAGT 58.873 39.130 0.00 0.00 46.34 2.66
329 333 1.068333 CAAAAGTCCACCGCCATGAAG 60.068 52.381 0.00 0.00 0.00 3.02
430 435 1.414158 CACGATCACCCCTACTCCAT 58.586 55.000 0.00 0.00 0.00 3.41
436 441 0.471971 CACCCCTACTCCATCCCGAT 60.472 60.000 0.00 0.00 0.00 4.18
492 515 4.436998 CAGTGGGGGCGACGAGAC 62.437 72.222 0.00 0.00 0.00 3.36
498 521 4.517703 GGGCGACGAGACGACGAG 62.518 72.222 17.69 0.00 46.01 4.18
499 522 3.485431 GGCGACGAGACGACGAGA 61.485 66.667 17.69 0.00 46.01 4.04
500 523 2.275935 GCGACGAGACGACGAGAC 60.276 66.667 17.69 0.00 46.01 3.36
541 581 1.979155 GAAGTTTGGGCAGCCCTCC 60.979 63.158 31.51 18.04 45.70 4.30
565 605 5.878332 AAAAAGAAAGTTTGGGCAGTTTG 57.122 34.783 0.00 0.00 0.00 2.93
665 727 3.554752 CCACCTTGGTGCCATAAAACAAG 60.555 47.826 13.93 0.00 38.52 3.16
689 751 2.029290 AGAGTACGAACACGCATTCCTT 60.029 45.455 0.00 0.00 0.00 3.36
796 858 1.061799 CGAACGCAAAGCTCATGCAC 61.062 55.000 20.48 11.85 44.01 4.57
877 939 2.430244 CGGTGAGACGGGTTCACG 60.430 66.667 9.20 0.00 44.56 4.35
976 1038 4.025979 CGTCTCCGCATCCACTTATAAAAC 60.026 45.833 0.00 0.00 0.00 2.43
980 1042 3.888930 CCGCATCCACTTATAAAACCCAT 59.111 43.478 0.00 0.00 0.00 4.00
1010 1072 0.108089 GTCGCCTCCCTCTTTTCCTC 60.108 60.000 0.00 0.00 0.00 3.71
1093 1155 2.048127 GTTCGTCTCCTGCGGCTT 60.048 61.111 0.00 0.00 0.00 4.35
1389 1460 1.330655 ATCTTGTCGCCAGATCCGGT 61.331 55.000 0.00 0.00 0.00 5.28
1521 1592 4.191015 GGATCCGGCCCTTCCACC 62.191 72.222 0.00 0.00 34.01 4.61
1534 1686 4.720902 CCACCAGCGGCATGGACA 62.721 66.667 20.43 0.00 43.57 4.02
1746 1898 1.677637 GCGGATCCGGAGTTCCTTCT 61.678 60.000 33.98 0.00 40.19 2.85
1823 1975 4.973055 CGTCGCCGTCCAACCCAA 62.973 66.667 0.00 0.00 0.00 4.12
1885 2040 3.183373 CGCCTTATCGCTTTCTCATTCTC 59.817 47.826 0.00 0.00 0.00 2.87
1899 2054 4.112634 CTCATTCTCTGCGGTTTATTCGA 58.887 43.478 0.00 0.00 0.00 3.71
1913 2068 1.439679 ATTCGACTCGCTTTTGGACC 58.560 50.000 0.00 0.00 0.00 4.46
1971 2126 2.728846 CGCGTGAATTGCAGCAGTATTT 60.729 45.455 0.00 0.00 0.00 1.40
2098 2253 3.774702 GGCGTGGCGTTCTTCGTC 61.775 66.667 0.00 0.00 45.13 4.20
2111 2300 1.895798 TCTTCGTCTGAATGAGCTGGT 59.104 47.619 0.00 0.00 32.61 4.00
2116 2305 3.509967 TCGTCTGAATGAGCTGGTTAGAA 59.490 43.478 0.00 0.00 0.00 2.10
2121 2310 5.423290 TCTGAATGAGCTGGTTAGAAGATGA 59.577 40.000 0.00 0.00 0.00 2.92
2133 2322 6.706270 TGGTTAGAAGATGAAGTTCTTGTGTC 59.294 38.462 4.17 0.00 36.10 3.67
2134 2323 6.128795 GGTTAGAAGATGAAGTTCTTGTGTCG 60.129 42.308 4.17 0.00 36.10 4.35
2135 2324 4.950050 AGAAGATGAAGTTCTTGTGTCGT 58.050 39.130 4.17 0.00 36.10 4.34
2136 2325 6.085555 AGAAGATGAAGTTCTTGTGTCGTA 57.914 37.500 4.17 0.00 36.10 3.43
2137 2326 5.921408 AGAAGATGAAGTTCTTGTGTCGTAC 59.079 40.000 4.17 0.00 36.10 3.67
2138 2327 5.455056 AGATGAAGTTCTTGTGTCGTACT 57.545 39.130 4.17 0.00 0.00 2.73
2139 2328 5.462405 AGATGAAGTTCTTGTGTCGTACTC 58.538 41.667 4.17 0.00 0.00 2.59
2140 2329 3.973657 TGAAGTTCTTGTGTCGTACTCC 58.026 45.455 4.17 0.00 0.00 3.85
2141 2330 2.701073 AGTTCTTGTGTCGTACTCCG 57.299 50.000 0.00 0.00 38.13 4.63
2142 2331 1.268899 AGTTCTTGTGTCGTACTCCGG 59.731 52.381 0.00 0.00 37.11 5.14
2143 2332 0.038892 TTCTTGTGTCGTACTCCGGC 60.039 55.000 0.00 0.00 42.95 6.13
2144 2333 1.800315 CTTGTGTCGTACTCCGGCG 60.800 63.158 0.00 0.00 46.52 6.46
2148 2337 4.849329 GTCGTACTCCGGCGCCAG 62.849 72.222 28.98 20.01 37.11 4.85
2176 2365 3.306364 CGCCGGAGAGGATAAATCATTCT 60.306 47.826 5.05 0.00 45.00 2.40
2177 2366 4.249661 GCCGGAGAGGATAAATCATTCTC 58.750 47.826 5.05 12.05 45.00 2.87
2182 2371 5.798125 AGAGGATAAATCATTCTCTCGCA 57.202 39.130 0.00 0.00 45.28 5.10
2183 2372 6.357579 AGAGGATAAATCATTCTCTCGCAT 57.642 37.500 0.00 0.00 45.28 4.73
2188 2380 2.071688 ATCATTCTCTCGCATACGGC 57.928 50.000 0.00 0.00 40.63 5.68
2216 2408 2.312436 CCGGGGTCGTTTTCGTGAC 61.312 63.158 0.00 0.00 44.46 3.67
2240 2432 0.032615 TGGCTTTTGTGTGGACCCTT 60.033 50.000 0.00 0.00 0.00 3.95
2283 2475 3.215975 GTCTAGTGTAGCTGGAGGTAGG 58.784 54.545 0.00 0.00 35.30 3.18
2290 2482 2.423446 CTGGAGGTAGGCGATGGC 59.577 66.667 0.00 0.00 38.90 4.40
2350 2546 5.567534 CGCCGCATTTATCGCTTTTATTTAT 59.432 36.000 0.00 0.00 0.00 1.40
2351 2547 6.087555 CGCCGCATTTATCGCTTTTATTTATT 59.912 34.615 0.00 0.00 0.00 1.40
2352 2548 7.358023 CGCCGCATTTATCGCTTTTATTTATTT 60.358 33.333 0.00 0.00 0.00 1.40
2353 2549 8.907685 GCCGCATTTATCGCTTTTATTTATTTA 58.092 29.630 0.00 0.00 0.00 1.40
2362 2563 8.149973 TCGCTTTTATTTATTTATTCCTCGCT 57.850 30.769 0.00 0.00 0.00 4.93
2378 2579 3.432186 CCTCGCTCCATCCAATCAGTAAA 60.432 47.826 0.00 0.00 0.00 2.01
2379 2580 4.384056 CTCGCTCCATCCAATCAGTAAAT 58.616 43.478 0.00 0.00 0.00 1.40
2380 2581 5.511373 CCTCGCTCCATCCAATCAGTAAATA 60.511 44.000 0.00 0.00 0.00 1.40
2381 2582 5.924356 TCGCTCCATCCAATCAGTAAATAA 58.076 37.500 0.00 0.00 0.00 1.40
2383 2584 5.180117 CGCTCCATCCAATCAGTAAATAAGG 59.820 44.000 0.00 0.00 0.00 2.69
2384 2585 5.474876 GCTCCATCCAATCAGTAAATAAGGG 59.525 44.000 0.00 0.00 0.00 3.95
2385 2586 5.952387 TCCATCCAATCAGTAAATAAGGGG 58.048 41.667 0.00 0.00 0.00 4.79
2386 2587 5.435041 TCCATCCAATCAGTAAATAAGGGGT 59.565 40.000 0.00 0.00 0.00 4.95
2387 2588 6.621931 TCCATCCAATCAGTAAATAAGGGGTA 59.378 38.462 0.00 0.00 0.00 3.69
2389 2590 7.202186 CCATCCAATCAGTAAATAAGGGGTAGA 60.202 40.741 0.00 0.00 0.00 2.59
2391 2592 8.165267 TCCAATCAGTAAATAAGGGGTAGAAA 57.835 34.615 0.00 0.00 0.00 2.52
2393 2594 9.250246 CCAATCAGTAAATAAGGGGTAGAAAAA 57.750 33.333 0.00 0.00 0.00 1.94
2456 2657 7.602644 AGCAGTCGTGAAATCTTGAGTAATTTA 59.397 33.333 0.00 0.00 0.00 1.40
2496 2731 2.233676 GGGTTTTGAATTGGAAGGCGAT 59.766 45.455 0.00 0.00 0.00 4.58
2522 2937 8.720909 TTGATTAATTATTGTGTGTGTCGTTG 57.279 30.769 0.00 0.00 0.00 4.10
2549 3158 6.791303 TGCGGATTTGGAATTACTCAATTAC 58.209 36.000 0.00 0.00 35.76 1.89
2551 3160 7.132863 GCGGATTTGGAATTACTCAATTACTC 58.867 38.462 0.00 0.00 36.14 2.59
2603 3222 1.003464 CCCCATCGCCATCATGTGATA 59.997 52.381 0.00 0.00 33.85 2.15
2617 3290 0.457851 GTGATAGCTGCACTCTCCGT 59.542 55.000 12.65 0.00 33.57 4.69
2629 3302 1.337817 CTCTCCGTGCGTGTTTCTCG 61.338 60.000 0.00 0.00 0.00 4.04
2656 3329 4.213906 TCGAGTGGTAAAATTTCGTTTCCC 59.786 41.667 0.00 0.00 33.35 3.97
2697 3498 2.332117 TGTAGACTTCCTTCGGGGTTT 58.668 47.619 0.00 0.00 36.25 3.27
2715 3516 4.025401 CGGTGCTGTTTCCCGTGC 62.025 66.667 0.00 0.00 37.00 5.34
2717 3518 4.025401 GTGCTGTTTCCCGTGCGG 62.025 66.667 3.25 3.25 0.00 5.69
2738 3539 4.636435 CGTGGGTCCGGCCAGTTT 62.636 66.667 15.49 0.00 39.65 2.66
2739 3540 2.203437 GTGGGTCCGGCCAGTTTT 60.203 61.111 15.49 0.00 39.65 2.43
2740 3541 1.830847 GTGGGTCCGGCCAGTTTTT 60.831 57.895 15.49 0.00 39.65 1.94
2741 3542 1.830408 TGGGTCCGGCCAGTTTTTG 60.830 57.895 15.49 0.00 39.65 2.44
2742 3543 1.830847 GGGTCCGGCCAGTTTTTGT 60.831 57.895 15.49 0.00 39.65 2.83
2743 3544 1.362355 GGTCCGGCCAGTTTTTGTG 59.638 57.895 2.24 0.00 37.17 3.33
2744 3545 1.362355 GTCCGGCCAGTTTTTGTGG 59.638 57.895 2.24 0.00 38.21 4.17
2745 3546 1.104577 GTCCGGCCAGTTTTTGTGGA 61.105 55.000 2.24 0.00 37.23 4.02
2746 3547 1.104577 TCCGGCCAGTTTTTGTGGAC 61.105 55.000 2.24 0.00 40.11 4.02
2766 3586 2.922950 CGGTCCCACGGAGTTCGAA 61.923 63.158 0.00 0.00 41.61 3.71
2769 3589 1.532316 TCCCACGGAGTTCGAAGGT 60.532 57.895 0.00 0.00 41.61 3.50
2771 3591 0.250166 CCCACGGAGTTCGAAGGTTT 60.250 55.000 0.00 0.00 41.61 3.27
2773 3593 1.539496 CCACGGAGTTCGAAGGTTTGA 60.539 52.381 0.00 0.00 41.61 2.69
2774 3594 1.525619 CACGGAGTTCGAAGGTTTGAC 59.474 52.381 0.00 0.00 41.61 3.18
2775 3595 1.137479 ACGGAGTTCGAAGGTTTGACA 59.863 47.619 0.00 0.00 37.78 3.58
2776 3596 1.525619 CGGAGTTCGAAGGTTTGACAC 59.474 52.381 0.00 0.00 42.43 3.67
2777 3597 3.685057 CGGAGTTCGAAGGTTTGACACC 61.685 54.545 0.00 0.00 43.55 4.16
2792 3615 2.994995 ACCCAGCGTGTCATCGGA 60.995 61.111 0.00 0.00 0.00 4.55
2837 3660 4.592485 TTTTGCTAAATTCAGGCGGAAA 57.408 36.364 3.74 0.00 39.39 3.13
2860 3683 0.935196 CGGCCTACAGAAATAACCGC 59.065 55.000 0.00 0.00 31.85 5.68
2861 3684 1.741055 CGGCCTACAGAAATAACCGCA 60.741 52.381 0.00 0.00 31.85 5.69
2863 3686 2.629051 GCCTACAGAAATAACCGCAGT 58.371 47.619 0.00 0.00 0.00 4.40
2864 3687 3.431207 GGCCTACAGAAATAACCGCAGTA 60.431 47.826 0.00 0.00 0.00 2.74
2865 3688 3.554731 GCCTACAGAAATAACCGCAGTAC 59.445 47.826 0.00 0.00 0.00 2.73
2880 3709 3.745975 CGCAGTACATCTTCAGTGGAAAA 59.254 43.478 0.00 0.00 31.35 2.29
2903 3732 1.078709 CGCGAAGATTGAAAGCTGGA 58.921 50.000 0.00 0.00 0.00 3.86
3177 4013 0.606673 GGGCTGCGACTTCTTTCCTT 60.607 55.000 0.00 0.00 0.00 3.36
3178 4014 0.799393 GGCTGCGACTTCTTTCCTTC 59.201 55.000 0.00 0.00 0.00 3.46
3266 4270 3.057596 GTGTGCTGGCTTATTTGTTGCTA 60.058 43.478 0.00 0.00 0.00 3.49
3267 4271 3.191162 TGTGCTGGCTTATTTGTTGCTAG 59.809 43.478 0.00 0.00 38.15 3.42
3268 4272 3.191371 GTGCTGGCTTATTTGTTGCTAGT 59.809 43.478 0.00 0.00 37.57 2.57
3269 4273 4.394920 GTGCTGGCTTATTTGTTGCTAGTA 59.605 41.667 0.00 0.00 37.57 1.82
3270 4274 4.394920 TGCTGGCTTATTTGTTGCTAGTAC 59.605 41.667 0.00 0.00 37.57 2.73
3271 4275 4.636206 GCTGGCTTATTTGTTGCTAGTACT 59.364 41.667 0.00 0.00 37.57 2.73
3277 4281 7.652507 GGCTTATTTGTTGCTAGTACTAGTAGG 59.347 40.741 26.76 13.22 35.65 3.18
3288 4292 2.335316 ACTAGTAGGAGCTGTCTCGG 57.665 55.000 1.45 0.00 40.26 4.63
3310 4314 4.098349 GGTTCCTTTGCATTGCATCTATGA 59.902 41.667 12.95 2.78 38.76 2.15
3348 4355 8.188139 ACAACTATTTTATTCCGCGATGATTTT 58.812 29.630 8.23 0.00 0.00 1.82
3426 4434 7.387948 GTCTAGTTGTTGTCATCCTGTATTTGT 59.612 37.037 0.00 0.00 0.00 2.83
3455 4466 5.747565 CAGTGTGCTTTCGTATTTTTCTCA 58.252 37.500 0.00 0.00 0.00 3.27
3496 4507 6.347888 CCAACTCAAATCATTTTGGTTGATGC 60.348 38.462 19.01 0.00 45.15 3.91
3514 4525 2.799017 TGCTGTGCAGGATCAAAAGAT 58.201 42.857 0.00 0.00 33.32 2.40
3587 4598 2.045045 CCAAGCATGGCGGAGGAA 60.045 61.111 0.00 0.00 40.58 3.36
3594 4605 1.097547 CATGGCGGAGGAATGGTGAC 61.098 60.000 0.00 0.00 0.00 3.67
3595 4606 1.274703 ATGGCGGAGGAATGGTGACT 61.275 55.000 0.00 0.00 0.00 3.41
3596 4607 1.450312 GGCGGAGGAATGGTGACTG 60.450 63.158 0.00 0.00 0.00 3.51
3597 4608 1.450312 GCGGAGGAATGGTGACTGG 60.450 63.158 0.00 0.00 0.00 4.00
3598 4609 1.983224 CGGAGGAATGGTGACTGGT 59.017 57.895 0.00 0.00 0.00 4.00
3599 4610 0.391661 CGGAGGAATGGTGACTGGTG 60.392 60.000 0.00 0.00 0.00 4.17
3614 4625 2.419739 GGTGAGAGGCGAGGAGGAC 61.420 68.421 0.00 0.00 0.00 3.85
3616 4627 2.835895 GAGAGGCGAGGAGGACCC 60.836 72.222 0.00 0.00 36.73 4.46
3648 4661 3.485463 TGCTAACTAGTTGGTGTGCTT 57.515 42.857 18.56 0.00 0.00 3.91
3654 4667 3.977244 GTTGGTGTGCTTGGGGCG 61.977 66.667 0.00 0.00 45.43 6.13
3737 4754 2.094182 GGTGTGTTAAGCTGAGATCGGA 60.094 50.000 0.00 0.00 0.00 4.55
3793 4811 4.463186 TCAGGGTTAACTTAGTCTGCTCTC 59.537 45.833 5.42 0.00 0.00 3.20
3885 4903 6.587608 GTCCCTGCTATTTTCATCTTTGTTTG 59.412 38.462 0.00 0.00 0.00 2.93
3988 5006 8.545229 TTGTTTGTTTCATATTGGCTATTTGG 57.455 30.769 0.40 0.00 0.00 3.28
4044 5266 9.233232 GTCCGTTTAATGGAATTGATGATTTAC 57.767 33.333 7.56 0.00 36.99 2.01
4045 5267 8.410141 TCCGTTTAATGGAATTGATGATTTACC 58.590 33.333 3.01 0.00 36.99 2.85
4047 5269 9.801873 CGTTTAATGGAATTGATGATTTACCTT 57.198 29.630 0.00 0.00 36.99 3.50
4052 5274 9.927081 AATGGAATTGATGATTTACCTTCTAGT 57.073 29.630 0.00 0.00 33.44 2.57
4079 5337 2.021457 CACACCCGTCCACTTTTTCTT 58.979 47.619 0.00 0.00 0.00 2.52
4080 5338 2.032924 CACACCCGTCCACTTTTTCTTC 59.967 50.000 0.00 0.00 0.00 2.87
4081 5339 2.092592 ACACCCGTCCACTTTTTCTTCT 60.093 45.455 0.00 0.00 0.00 2.85
4156 5414 9.993454 AGTTTATAATAAATACTCCCTTCGTCC 57.007 33.333 0.00 0.00 0.00 4.79
4157 5415 8.919661 GTTTATAATAAATACTCCCTTCGTCCG 58.080 37.037 0.00 0.00 0.00 4.79
4158 5416 6.906157 ATAATAAATACTCCCTTCGTCCGA 57.094 37.500 0.00 0.00 0.00 4.55
4159 5417 5.603170 AATAAATACTCCCTTCGTCCGAA 57.397 39.130 1.81 1.81 0.00 4.30
4160 5418 3.967332 AAATACTCCCTTCGTCCGAAA 57.033 42.857 3.52 0.00 33.34 3.46
4161 5419 3.967332 AATACTCCCTTCGTCCGAAAA 57.033 42.857 3.52 0.00 33.34 2.29
4162 5420 4.482952 AATACTCCCTTCGTCCGAAAAT 57.517 40.909 3.52 0.00 33.34 1.82
4163 5421 5.603170 AATACTCCCTTCGTCCGAAAATA 57.397 39.130 3.52 0.00 33.34 1.40
4164 5422 3.242549 ACTCCCTTCGTCCGAAAATAC 57.757 47.619 3.52 0.00 33.34 1.89
4165 5423 2.830321 ACTCCCTTCGTCCGAAAATACT 59.170 45.455 3.52 0.00 33.34 2.12
4166 5424 3.260128 ACTCCCTTCGTCCGAAAATACTT 59.740 43.478 3.52 0.00 33.34 2.24
4167 5425 3.592059 TCCCTTCGTCCGAAAATACTTG 58.408 45.455 3.52 0.00 33.34 3.16
4168 5426 3.007182 TCCCTTCGTCCGAAAATACTTGT 59.993 43.478 3.52 0.00 33.34 3.16
4169 5427 3.370061 CCCTTCGTCCGAAAATACTTGTC 59.630 47.826 3.52 0.00 33.34 3.18
4170 5428 3.991773 CCTTCGTCCGAAAATACTTGTCA 59.008 43.478 3.52 0.00 33.34 3.58
4171 5429 4.630069 CCTTCGTCCGAAAATACTTGTCAT 59.370 41.667 3.52 0.00 33.34 3.06
4172 5430 5.220416 CCTTCGTCCGAAAATACTTGTCATC 60.220 44.000 3.52 0.00 33.34 2.92
4173 5431 4.811908 TCGTCCGAAAATACTTGTCATCA 58.188 39.130 0.00 0.00 0.00 3.07
4174 5432 5.231702 TCGTCCGAAAATACTTGTCATCAA 58.768 37.500 0.00 0.00 0.00 2.57
4175 5433 5.697178 TCGTCCGAAAATACTTGTCATCAAA 59.303 36.000 0.00 0.00 32.87 2.69
4176 5434 6.203145 TCGTCCGAAAATACTTGTCATCAAAA 59.797 34.615 0.00 0.00 32.87 2.44
4177 5435 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4178 5436 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4179 5437 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4180 5438 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4181 5439 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
4189 5447 8.526147 ACTTGTCATCAAAATGGATAAAAGAGG 58.474 33.333 0.00 0.00 33.42 3.69
4190 5448 8.648698 TTGTCATCAAAATGGATAAAAGAGGA 57.351 30.769 0.00 0.00 33.42 3.71
4191 5449 8.827832 TGTCATCAAAATGGATAAAAGAGGAT 57.172 30.769 0.00 0.00 33.42 3.24
4192 5450 8.689061 TGTCATCAAAATGGATAAAAGAGGATG 58.311 33.333 0.00 0.00 33.42 3.51
4193 5451 8.689972 GTCATCAAAATGGATAAAAGAGGATGT 58.310 33.333 0.00 0.00 33.42 3.06
4194 5452 9.919416 TCATCAAAATGGATAAAAGAGGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
4202 5460 8.112016 TGGATAAAAGAGGATGTATCTAGACG 57.888 38.462 0.00 0.00 0.00 4.18
4203 5461 7.942894 TGGATAAAAGAGGATGTATCTAGACGA 59.057 37.037 0.00 0.00 0.00 4.20
4204 5462 8.962679 GGATAAAAGAGGATGTATCTAGACGAT 58.037 37.037 0.00 0.00 36.11 3.73
4205 5463 9.781834 GATAAAAGAGGATGTATCTAGACGATG 57.218 37.037 0.00 0.00 33.48 3.84
4206 5464 7.589958 AAAAGAGGATGTATCTAGACGATGT 57.410 36.000 0.00 0.00 33.48 3.06
4207 5465 7.589958 AAAGAGGATGTATCTAGACGATGTT 57.410 36.000 0.00 0.00 33.48 2.71
4208 5466 7.589958 AAGAGGATGTATCTAGACGATGTTT 57.410 36.000 0.00 0.00 33.48 2.83
4209 5467 7.589958 AGAGGATGTATCTAGACGATGTTTT 57.410 36.000 0.00 0.00 33.48 2.43
4210 5468 8.693120 AGAGGATGTATCTAGACGATGTTTTA 57.307 34.615 0.00 0.00 33.48 1.52
4211 5469 8.788806 AGAGGATGTATCTAGACGATGTTTTAG 58.211 37.037 0.00 0.00 33.48 1.85
4212 5470 8.466617 AGGATGTATCTAGACGATGTTTTAGT 57.533 34.615 0.00 0.00 33.48 2.24
4213 5471 8.915036 AGGATGTATCTAGACGATGTTTTAGTT 58.085 33.333 0.00 0.00 33.48 2.24
4214 5472 9.530633 GGATGTATCTAGACGATGTTTTAGTTT 57.469 33.333 0.00 0.00 33.48 2.66
4258 5516 7.767261 TCCATTTTAATGACAAGTATTTCCGG 58.233 34.615 0.00 0.00 38.70 5.14
4259 5517 7.612244 TCCATTTTAATGACAAGTATTTCCGGA 59.388 33.333 0.00 0.00 38.70 5.14
4260 5518 7.700656 CCATTTTAATGACAAGTATTTCCGGAC 59.299 37.037 1.83 0.00 38.70 4.79
4261 5519 6.411630 TTTAATGACAAGTATTTCCGGACG 57.588 37.500 1.83 0.00 0.00 4.79
4262 5520 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4263 5521 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4264 5522 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4265 5523 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4266 5524 1.479323 CAAGTATTTCCGGACGGAGGA 59.521 52.381 13.64 7.39 46.06 3.71
4267 5525 1.856629 AGTATTTCCGGACGGAGGAA 58.143 50.000 13.64 6.93 46.06 3.36
4271 5529 2.571548 TTCCGGACGGAGGAAGTAC 58.428 57.895 13.64 0.00 46.06 2.73
4272 5530 0.038744 TTCCGGACGGAGGAAGTACT 59.961 55.000 13.64 0.00 46.06 2.73
4273 5531 0.911769 TCCGGACGGAGGAAGTACTA 59.088 55.000 9.76 0.00 39.76 1.82
4274 5532 1.492176 TCCGGACGGAGGAAGTACTAT 59.508 52.381 9.76 0.00 39.76 2.12
4275 5533 1.878734 CCGGACGGAGGAAGTACTATC 59.121 57.143 4.40 0.00 37.50 2.08
4276 5534 2.569059 CGGACGGAGGAAGTACTATCA 58.431 52.381 0.00 0.00 0.00 2.15
4277 5535 2.947652 CGGACGGAGGAAGTACTATCAA 59.052 50.000 0.00 0.00 0.00 2.57
4278 5536 3.379372 CGGACGGAGGAAGTACTATCAAA 59.621 47.826 0.00 0.00 0.00 2.69
4279 5537 4.037684 CGGACGGAGGAAGTACTATCAAAT 59.962 45.833 0.00 0.00 0.00 2.32
4280 5538 5.240183 CGGACGGAGGAAGTACTATCAAATA 59.760 44.000 0.00 0.00 0.00 1.40
4281 5539 6.238842 CGGACGGAGGAAGTACTATCAAATAA 60.239 42.308 0.00 0.00 0.00 1.40
4282 5540 6.922407 GGACGGAGGAAGTACTATCAAATAAC 59.078 42.308 0.00 0.00 0.00 1.89
4283 5541 7.414222 ACGGAGGAAGTACTATCAAATAACA 57.586 36.000 0.00 0.00 0.00 2.41
4284 5542 7.490000 ACGGAGGAAGTACTATCAAATAACAG 58.510 38.462 0.00 0.00 0.00 3.16
4285 5543 7.123847 ACGGAGGAAGTACTATCAAATAACAGT 59.876 37.037 0.00 0.00 0.00 3.55
4286 5544 7.980099 CGGAGGAAGTACTATCAAATAACAGTT 59.020 37.037 0.00 0.00 0.00 3.16
4287 5545 9.668497 GGAGGAAGTACTATCAAATAACAGTTT 57.332 33.333 0.00 0.00 0.00 2.66
4290 5548 9.556030 GGAAGTACTATCAAATAACAGTTTTGC 57.444 33.333 0.00 0.00 34.73 3.68
4299 5557 8.445275 TCAAATAACAGTTTTGCTAGAACTCA 57.555 30.769 0.00 0.00 35.26 3.41
4300 5558 9.066892 TCAAATAACAGTTTTGCTAGAACTCAT 57.933 29.630 0.00 0.00 35.26 2.90
4301 5559 9.334693 CAAATAACAGTTTTGCTAGAACTCATC 57.665 33.333 0.00 0.00 35.26 2.92
4302 5560 8.854614 AATAACAGTTTTGCTAGAACTCATCT 57.145 30.769 0.00 0.00 42.48 2.90
4303 5561 9.944376 AATAACAGTTTTGCTAGAACTCATCTA 57.056 29.630 0.00 0.00 39.71 1.98
4331 5589 8.908786 TGAGATATAATTTGGTCTCATTCACC 57.091 34.615 10.50 0.00 41.40 4.02
4332 5590 8.717717 TGAGATATAATTTGGTCTCATTCACCT 58.282 33.333 10.50 0.00 41.40 4.00
4333 5591 9.566432 GAGATATAATTTGGTCTCATTCACCTT 57.434 33.333 8.11 0.00 37.60 3.50
4334 5592 9.927081 AGATATAATTTGGTCTCATTCACCTTT 57.073 29.630 0.00 0.00 34.66 3.11
4340 5598 9.533831 AATTTGGTCTCATTCACCTTTTATAGT 57.466 29.630 0.00 0.00 34.66 2.12
4341 5599 8.561738 TTTGGTCTCATTCACCTTTTATAGTC 57.438 34.615 0.00 0.00 34.66 2.59
4342 5600 7.252612 TGGTCTCATTCACCTTTTATAGTCA 57.747 36.000 0.00 0.00 34.66 3.41
4343 5601 7.861629 TGGTCTCATTCACCTTTTATAGTCAT 58.138 34.615 0.00 0.00 34.66 3.06
4344 5602 8.328758 TGGTCTCATTCACCTTTTATAGTCATT 58.671 33.333 0.00 0.00 34.66 2.57
4345 5603 9.832445 GGTCTCATTCACCTTTTATAGTCATTA 57.168 33.333 0.00 0.00 0.00 1.90
4366 5624 9.688592 TCATTAGATATGATGCTATAAGATGCG 57.311 33.333 0.00 0.00 0.00 4.73
4367 5625 9.473640 CATTAGATATGATGCTATAAGATGCGT 57.526 33.333 0.00 0.00 0.00 5.24
4368 5626 8.862550 TTAGATATGATGCTATAAGATGCGTG 57.137 34.615 0.00 0.00 0.00 5.34
4369 5627 6.871844 AGATATGATGCTATAAGATGCGTGT 58.128 36.000 0.00 0.00 0.00 4.49
4370 5628 6.755607 AGATATGATGCTATAAGATGCGTGTG 59.244 38.462 0.00 0.00 0.00 3.82
4371 5629 4.058721 TGATGCTATAAGATGCGTGTGT 57.941 40.909 0.00 0.00 0.00 3.72
4372 5630 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
4373 5631 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
4374 5632 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
4375 5633 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
4376 5634 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
4377 5635 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
4378 5636 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
4379 5637 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
4380 5638 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
4381 5639 3.261951 GCGTGTGTGCTGACGTGT 61.262 61.111 0.00 0.00 37.89 4.49
4382 5640 1.947146 GCGTGTGTGCTGACGTGTA 60.947 57.895 0.00 0.00 37.89 2.90
4383 5641 1.282248 GCGTGTGTGCTGACGTGTAT 61.282 55.000 0.00 0.00 37.89 2.29
4384 5642 1.136690 CGTGTGTGCTGACGTGTATT 58.863 50.000 0.00 0.00 0.00 1.89
4385 5643 1.136639 CGTGTGTGCTGACGTGTATTG 60.137 52.381 0.00 0.00 0.00 1.90
4386 5644 1.864711 GTGTGTGCTGACGTGTATTGT 59.135 47.619 0.00 0.00 0.00 2.71
4387 5645 3.054166 GTGTGTGCTGACGTGTATTGTA 58.946 45.455 0.00 0.00 0.00 2.41
4388 5646 3.678072 GTGTGTGCTGACGTGTATTGTAT 59.322 43.478 0.00 0.00 0.00 2.29
4389 5647 3.924073 TGTGTGCTGACGTGTATTGTATC 59.076 43.478 0.00 0.00 0.00 2.24
4390 5648 4.174009 GTGTGCTGACGTGTATTGTATCT 58.826 43.478 0.00 0.00 0.00 1.98
4391 5649 5.106078 TGTGTGCTGACGTGTATTGTATCTA 60.106 40.000 0.00 0.00 0.00 1.98
4392 5650 5.977725 GTGTGCTGACGTGTATTGTATCTAT 59.022 40.000 0.00 0.00 0.00 1.98
4393 5651 6.475727 GTGTGCTGACGTGTATTGTATCTATT 59.524 38.462 0.00 0.00 0.00 1.73
4394 5652 7.010183 GTGTGCTGACGTGTATTGTATCTATTT 59.990 37.037 0.00 0.00 0.00 1.40
4395 5653 7.547722 TGTGCTGACGTGTATTGTATCTATTTT 59.452 33.333 0.00 0.00 0.00 1.82
4396 5654 8.388103 GTGCTGACGTGTATTGTATCTATTTTT 58.612 33.333 0.00 0.00 0.00 1.94
4397 5655 9.589111 TGCTGACGTGTATTGTATCTATTTTTA 57.411 29.630 0.00 0.00 0.00 1.52
4429 5687 9.566432 AAAGTGGATGAGACCAAATTATATCTC 57.434 33.333 0.00 6.03 41.87 2.75
4454 5712 8.330247 TCATCTAGATGAGTTATAGGTACTCCC 58.670 40.741 27.93 0.00 42.42 4.30
4455 5713 7.643612 TCTAGATGAGTTATAGGTACTCCCA 57.356 40.000 0.00 0.00 41.02 4.37
4456 5714 8.233349 TCTAGATGAGTTATAGGTACTCCCAT 57.767 38.462 0.00 0.00 41.02 4.00
4457 5715 8.330247 TCTAGATGAGTTATAGGTACTCCCATC 58.670 40.741 0.00 0.00 41.02 3.51
4458 5716 6.864421 AGATGAGTTATAGGTACTCCCATCA 58.136 40.000 0.00 0.00 41.02 3.07
4459 5717 7.306013 AGATGAGTTATAGGTACTCCCATCAA 58.694 38.462 0.00 0.00 41.02 2.57
4460 5718 7.789831 AGATGAGTTATAGGTACTCCCATCAAA 59.210 37.037 0.00 0.00 41.02 2.69
4461 5719 7.931015 TGAGTTATAGGTACTCCCATCAAAT 57.069 36.000 0.00 0.00 41.02 2.32
4559 5843 0.322906 GCCACTTTCTCCTTCCCCTG 60.323 60.000 0.00 0.00 0.00 4.45
4582 5867 4.397348 CTGTAAGCTTTGCCCGGT 57.603 55.556 3.20 0.00 0.00 5.28
4583 5868 3.543884 CTGTAAGCTTTGCCCGGTA 57.456 52.632 3.20 0.00 0.00 4.02
4584 5869 1.084289 CTGTAAGCTTTGCCCGGTAC 58.916 55.000 3.20 0.00 0.00 3.34
4585 5870 0.321830 TGTAAGCTTTGCCCGGTACC 60.322 55.000 3.20 0.16 0.00 3.34
4586 5871 0.321830 GTAAGCTTTGCCCGGTACCA 60.322 55.000 13.54 0.00 0.00 3.25
4587 5872 0.621609 TAAGCTTTGCCCGGTACCAT 59.378 50.000 13.54 0.00 0.00 3.55
4588 5873 0.251608 AAGCTTTGCCCGGTACCATT 60.252 50.000 13.54 0.00 0.00 3.16
4589 5874 0.621609 AGCTTTGCCCGGTACCATTA 59.378 50.000 13.54 0.00 0.00 1.90
4590 5875 1.214424 AGCTTTGCCCGGTACCATTAT 59.786 47.619 13.54 0.00 0.00 1.28
4591 5876 2.440253 AGCTTTGCCCGGTACCATTATA 59.560 45.455 13.54 0.00 0.00 0.98
4592 5877 2.551032 GCTTTGCCCGGTACCATTATAC 59.449 50.000 13.54 0.00 0.00 1.47
4593 5878 3.811083 CTTTGCCCGGTACCATTATACA 58.189 45.455 13.54 0.00 0.00 2.29
4594 5879 2.914695 TGCCCGGTACCATTATACAC 57.085 50.000 13.54 0.00 0.00 2.90
4595 5880 2.117051 TGCCCGGTACCATTATACACA 58.883 47.619 13.54 0.00 0.00 3.72
4596 5881 2.103432 TGCCCGGTACCATTATACACAG 59.897 50.000 13.54 0.00 0.00 3.66
4597 5882 2.762745 CCCGGTACCATTATACACAGC 58.237 52.381 13.54 0.00 0.00 4.40
4598 5883 2.103432 CCCGGTACCATTATACACAGCA 59.897 50.000 13.54 0.00 0.00 4.41
4599 5884 3.244422 CCCGGTACCATTATACACAGCAT 60.244 47.826 13.54 0.00 0.00 3.79
4600 5885 3.994392 CCGGTACCATTATACACAGCATC 59.006 47.826 13.54 0.00 0.00 3.91
4601 5886 4.262463 CCGGTACCATTATACACAGCATCT 60.262 45.833 13.54 0.00 0.00 2.90
4602 5887 5.297547 CGGTACCATTATACACAGCATCTT 58.702 41.667 13.54 0.00 0.00 2.40
4603 5888 6.452242 CGGTACCATTATACACAGCATCTTA 58.548 40.000 13.54 0.00 0.00 2.10
4604 5889 6.586463 CGGTACCATTATACACAGCATCTTAG 59.414 42.308 13.54 0.00 0.00 2.18
4605 5890 6.369065 GGTACCATTATACACAGCATCTTAGC 59.631 42.308 7.15 0.00 0.00 3.09
4606 5891 5.928976 ACCATTATACACAGCATCTTAGCA 58.071 37.500 0.00 0.00 36.85 3.49
4607 5892 5.994054 ACCATTATACACAGCATCTTAGCAG 59.006 40.000 0.00 0.00 36.85 4.24
4608 5893 5.994054 CCATTATACACAGCATCTTAGCAGT 59.006 40.000 0.00 0.00 36.85 4.40
4609 5894 7.154656 CCATTATACACAGCATCTTAGCAGTA 58.845 38.462 0.00 0.00 32.66 2.74
4610 5895 7.330454 CCATTATACACAGCATCTTAGCAGTAG 59.670 40.741 0.00 0.00 32.66 2.57
4611 5896 2.898705 ACACAGCATCTTAGCAGTAGC 58.101 47.619 0.00 0.00 42.56 3.58
4621 5906 3.966215 GCAGTAGCGCTGGACAAA 58.034 55.556 22.90 0.00 45.14 2.83
4622 5907 2.244000 GCAGTAGCGCTGGACAAAA 58.756 52.632 22.90 0.00 45.14 2.44
4623 5908 0.110192 GCAGTAGCGCTGGACAAAAC 60.110 55.000 22.90 8.32 45.14 2.43
4624 5909 1.225855 CAGTAGCGCTGGACAAAACA 58.774 50.000 22.90 0.00 41.42 2.83
4625 5910 1.195448 CAGTAGCGCTGGACAAAACAG 59.805 52.381 22.90 0.56 41.42 3.16
4626 5911 0.517316 GTAGCGCTGGACAAAACAGG 59.483 55.000 22.90 0.00 36.48 4.00
4628 5913 2.644992 CGCTGGACAAAACAGGGC 59.355 61.111 0.00 0.00 41.08 5.19
4629 5914 2.644992 GCTGGACAAAACAGGGCG 59.355 61.111 0.00 0.00 36.48 6.13
4630 5915 2.644992 CTGGACAAAACAGGGCGC 59.355 61.111 0.00 0.00 32.38 6.53
4631 5916 1.898574 CTGGACAAAACAGGGCGCT 60.899 57.895 7.64 0.00 32.38 5.92
4632 5917 0.605319 CTGGACAAAACAGGGCGCTA 60.605 55.000 7.64 0.00 32.38 4.26
4633 5918 0.887387 TGGACAAAACAGGGCGCTAC 60.887 55.000 7.64 0.00 0.00 3.58
4634 5919 0.605589 GGACAAAACAGGGCGCTACT 60.606 55.000 7.64 2.81 0.00 2.57
4635 5920 0.517316 GACAAAACAGGGCGCTACTG 59.483 55.000 24.22 24.22 41.64 2.74
4636 5921 1.210155 CAAAACAGGGCGCTACTGC 59.790 57.895 25.26 2.49 39.55 4.40
4637 5922 1.073199 AAAACAGGGCGCTACTGCT 59.927 52.632 25.26 15.17 39.55 4.24
4638 5923 0.323629 AAAACAGGGCGCTACTGCTA 59.676 50.000 25.26 0.00 39.55 3.49
4639 5924 0.391263 AAACAGGGCGCTACTGCTAC 60.391 55.000 25.26 0.34 39.55 3.58
4640 5925 1.258445 AACAGGGCGCTACTGCTACT 61.258 55.000 25.26 9.29 39.55 2.57
4641 5926 1.258445 ACAGGGCGCTACTGCTACTT 61.258 55.000 25.26 8.99 39.55 2.24
4642 5927 0.744874 CAGGGCGCTACTGCTACTTA 59.255 55.000 17.12 0.00 36.97 2.24
4643 5928 1.136305 CAGGGCGCTACTGCTACTTAA 59.864 52.381 17.12 0.00 36.97 1.85
4644 5929 2.040178 AGGGCGCTACTGCTACTTAAT 58.960 47.619 7.64 0.00 36.97 1.40
4645 5930 3.005472 CAGGGCGCTACTGCTACTTAATA 59.995 47.826 17.12 0.00 36.97 0.98
4646 5931 3.256136 AGGGCGCTACTGCTACTTAATAG 59.744 47.826 7.64 0.00 36.97 1.73
4647 5932 3.005578 GGGCGCTACTGCTACTTAATAGT 59.994 47.826 7.64 0.00 38.44 2.12
4648 5933 4.217118 GGGCGCTACTGCTACTTAATAGTA 59.783 45.833 7.64 0.00 35.78 1.82
4670 5955 3.378959 CGAGTTTAAATAAACCGCGCT 57.621 42.857 5.56 0.00 44.97 5.92
4671 5956 4.503767 CGAGTTTAAATAAACCGCGCTA 57.496 40.909 5.56 0.00 44.97 4.26
4672 5957 4.258331 CGAGTTTAAATAAACCGCGCTAC 58.742 43.478 5.56 0.00 44.97 3.58
4673 5958 4.032104 CGAGTTTAAATAAACCGCGCTACT 59.968 41.667 5.56 0.00 44.97 2.57
4674 5959 5.212589 AGTTTAAATAAACCGCGCTACTG 57.787 39.130 5.56 0.00 44.97 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.003689 ACAATGCAGTTTTCTTGTCTCGG 59.996 43.478 0.00 0.00 0.00 4.63
134 136 7.440523 AACAGAGAATGGAGTATGTTTTGAC 57.559 36.000 0.00 0.00 0.00 3.18
135 137 6.368791 CGAACAGAGAATGGAGTATGTTTTGA 59.631 38.462 0.00 0.00 31.44 2.69
329 333 2.566570 GCTACTCTCGGGCTAGGGC 61.567 68.421 0.00 0.00 37.82 5.19
430 435 2.423898 GCTTGGTCCTCGATCGGGA 61.424 63.158 18.72 18.25 0.00 5.14
436 441 0.891373 CTCTCTTGCTTGGTCCTCGA 59.109 55.000 0.00 0.00 0.00 4.04
492 515 2.087009 GGTTTCTGCCGTCTCGTCG 61.087 63.158 0.00 0.00 0.00 5.12
493 516 1.737008 GGGTTTCTGCCGTCTCGTC 60.737 63.158 0.00 0.00 0.00 4.20
494 517 0.896940 TAGGGTTTCTGCCGTCTCGT 60.897 55.000 0.00 0.00 0.00 4.18
495 518 0.179134 CTAGGGTTTCTGCCGTCTCG 60.179 60.000 0.00 0.00 0.00 4.04
496 519 0.460459 GCTAGGGTTTCTGCCGTCTC 60.460 60.000 0.00 0.00 0.00 3.36
497 520 1.597461 GCTAGGGTTTCTGCCGTCT 59.403 57.895 0.00 0.00 0.00 4.18
498 521 1.810030 CGCTAGGGTTTCTGCCGTC 60.810 63.158 0.00 0.00 0.00 4.79
499 522 2.264794 CGCTAGGGTTTCTGCCGT 59.735 61.111 0.00 0.00 0.00 5.68
500 523 2.511600 CCGCTAGGGTTTCTGCCG 60.512 66.667 6.02 0.00 0.00 5.69
548 588 2.159114 TCTGCAAACTGCCCAAACTTTC 60.159 45.455 0.00 0.00 44.23 2.62
565 605 3.363772 GCATTTCGCTCTCATGTATCTGC 60.364 47.826 0.00 0.00 37.77 4.26
665 727 0.736325 ATGCGTGTTCGTACTCTGCC 60.736 55.000 0.00 0.00 39.49 4.85
689 751 2.682136 TCGATTGGTGGGGAGCGA 60.682 61.111 0.00 0.00 0.00 4.93
718 780 6.264970 GTCGGAGTAGTTCTATGTAAGGGAAT 59.735 42.308 0.00 0.00 0.00 3.01
769 831 0.724453 GCTTTGCGTTCGCGAAATCA 60.724 50.000 25.24 20.36 44.71 2.57
796 858 2.202703 CCGGGCGAGTCGGTAAAG 60.203 66.667 15.52 0.00 42.33 1.85
873 935 1.246056 CCTAGACCCGGTGTTCGTGA 61.246 60.000 0.00 0.00 37.11 4.35
876 938 2.890371 CCCTAGACCCGGTGTTCG 59.110 66.667 0.00 0.00 38.88 3.95
877 939 1.957765 GAGCCCTAGACCCGGTGTTC 61.958 65.000 0.00 0.00 0.00 3.18
1093 1155 2.727392 CGTACTCCGCCATGGGGAA 61.727 63.158 29.29 9.35 43.10 3.97
1370 1441 1.330655 ACCGGATCTGGCGACAAGAT 61.331 55.000 21.17 0.00 42.06 2.40
1372 1443 1.811266 CACCGGATCTGGCGACAAG 60.811 63.158 21.17 0.18 42.06 3.16
1740 1892 2.437180 TCGTCGCCGCTAGAAGGA 60.437 61.111 8.65 0.00 0.00 3.36
1795 1947 4.286320 GGCGACGGCGATGGAGAT 62.286 66.667 18.90 0.00 41.24 2.75
1822 1974 2.281900 TTTAACCGCGCCTGCCTT 60.282 55.556 0.00 0.00 38.08 4.35
1823 1975 3.053896 GTTTAACCGCGCCTGCCT 61.054 61.111 0.00 0.00 38.08 4.75
1859 2014 4.316205 TGAGAAAGCGATAAGGCGATTA 57.684 40.909 0.00 0.00 39.14 1.75
1885 2040 0.297820 GCGAGTCGAATAAACCGCAG 59.702 55.000 18.61 0.00 41.89 5.18
1899 2054 1.073199 CCAGGGTCCAAAAGCGAGT 59.927 57.895 0.00 0.00 0.00 4.18
1913 2068 0.324091 ATGCAAGAAAGGCCTCCAGG 60.324 55.000 5.23 0.00 38.53 4.45
1984 2139 0.384309 AACGAGACAGAGTCGCACAA 59.616 50.000 0.00 0.00 41.26 3.33
1989 2144 3.371285 TGATGAGTAACGAGACAGAGTCG 59.629 47.826 0.00 0.00 43.25 4.18
2050 2205 1.014044 CACATCAACGACGGGACAGG 61.014 60.000 0.00 0.00 0.00 4.00
2052 2207 0.105224 AACACATCAACGACGGGACA 59.895 50.000 0.00 0.00 0.00 4.02
2058 2213 3.427528 ACACGTATGAACACATCAACGAC 59.572 43.478 14.99 1.47 42.54 4.34
2098 2253 5.668471 TCATCTTCTAACCAGCTCATTCAG 58.332 41.667 0.00 0.00 0.00 3.02
2111 2300 6.513180 ACGACACAAGAACTTCATCTTCTAA 58.487 36.000 0.00 0.00 37.56 2.10
2116 2305 5.455056 AGTACGACACAAGAACTTCATCT 57.545 39.130 0.00 0.00 0.00 2.90
2151 2340 2.035961 TGATTTATCCTCTCCGGCGAAG 59.964 50.000 9.30 0.00 0.00 3.79
2152 2341 2.036387 TGATTTATCCTCTCCGGCGAA 58.964 47.619 9.30 0.00 0.00 4.70
2153 2342 1.699730 TGATTTATCCTCTCCGGCGA 58.300 50.000 9.30 0.00 0.00 5.54
2176 2365 3.592814 CGGAGGCCGTATGCGAGA 61.593 66.667 4.21 0.00 42.73 4.04
2177 2366 4.647615 CCGGAGGCCGTATGCGAG 62.648 72.222 4.21 0.00 46.80 5.03
2216 2408 1.199097 GTCCACACAAAAGCCATACGG 59.801 52.381 0.00 0.00 0.00 4.02
2290 2482 1.267261 CTATCTACCTTGCCTCGTCGG 59.733 57.143 0.00 0.00 0.00 4.79
2301 2493 9.709495 CGTATAACAGAACTACTCTATCTACCT 57.291 37.037 0.00 0.00 31.12 3.08
2350 2546 3.924114 TTGGATGGAGCGAGGAATAAA 57.076 42.857 0.00 0.00 0.00 1.40
2351 2547 3.390967 TGATTGGATGGAGCGAGGAATAA 59.609 43.478 0.00 0.00 0.00 1.40
2352 2548 2.972021 TGATTGGATGGAGCGAGGAATA 59.028 45.455 0.00 0.00 0.00 1.75
2353 2549 1.770658 TGATTGGATGGAGCGAGGAAT 59.229 47.619 0.00 0.00 0.00 3.01
2362 2563 5.435041 ACCCCTTATTTACTGATTGGATGGA 59.565 40.000 0.00 0.00 0.00 3.41
2456 2657 3.118519 ACCCCGCAATAATCGACTTTACT 60.119 43.478 0.00 0.00 0.00 2.24
2496 2731 9.175060 CAACGACACACACAATAATTAATCAAA 57.825 29.630 0.00 0.00 0.00 2.69
2522 2937 2.024414 AGTAATTCCAAATCCGCAGCC 58.976 47.619 0.00 0.00 0.00 4.85
2549 3158 3.362295 CGAAAACACACACAACATGGAG 58.638 45.455 0.00 0.00 0.00 3.86
2551 3160 1.851666 GCGAAAACACACACAACATGG 59.148 47.619 0.00 0.00 0.00 3.66
2629 3302 2.095372 CGAAATTTTACCACTCGAGGGC 59.905 50.000 18.41 0.00 0.00 5.19
2634 3307 4.214758 AGGGAAACGAAATTTTACCACTCG 59.785 41.667 0.78 0.00 32.68 4.18
2638 3311 5.239963 GTCAGAGGGAAACGAAATTTTACCA 59.760 40.000 0.78 0.00 32.68 3.25
2642 3315 5.736207 GCAAGTCAGAGGGAAACGAAATTTT 60.736 40.000 0.00 0.00 0.00 1.82
2721 3522 4.636435 AAACTGGCCGGACCCACG 62.636 66.667 21.41 0.43 37.83 4.94
2722 3523 1.830847 AAAAACTGGCCGGACCCAC 60.831 57.895 21.41 0.00 37.83 4.61
2723 3524 1.830408 CAAAAACTGGCCGGACCCA 60.830 57.895 21.41 1.81 37.83 4.51
2724 3525 1.830847 ACAAAAACTGGCCGGACCC 60.831 57.895 21.41 0.00 37.83 4.46
2725 3526 1.362355 CACAAAAACTGGCCGGACC 59.638 57.895 21.41 6.37 39.84 4.46
2726 3527 1.104577 TCCACAAAAACTGGCCGGAC 61.105 55.000 21.41 0.56 0.00 4.79
2727 3528 1.104577 GTCCACAAAAACTGGCCGGA 61.105 55.000 21.41 1.58 0.00 5.14
2728 3529 1.362355 GTCCACAAAAACTGGCCGG 59.638 57.895 11.02 11.02 0.00 6.13
2729 3530 1.362355 GGTCCACAAAAACTGGCCG 59.638 57.895 0.00 0.00 0.00 6.13
2730 3531 1.745890 GGGTCCACAAAAACTGGCC 59.254 57.895 0.00 0.00 0.00 5.36
2731 3532 1.362355 CGGGTCCACAAAAACTGGC 59.638 57.895 0.00 0.00 0.00 4.85
2732 3533 0.753848 ACCGGGTCCACAAAAACTGG 60.754 55.000 6.32 0.00 0.00 4.00
2733 3534 0.666374 GACCGGGTCCACAAAAACTG 59.334 55.000 16.55 0.00 0.00 3.16
2734 3535 3.105187 GACCGGGTCCACAAAAACT 57.895 52.632 16.55 0.00 0.00 2.66
2775 3595 1.899437 AATCCGATGACACGCTGGGT 61.899 55.000 0.00 0.00 0.00 4.51
2776 3596 0.744414 AAATCCGATGACACGCTGGG 60.744 55.000 0.00 0.00 0.00 4.45
2777 3597 1.062587 GAAAATCCGATGACACGCTGG 59.937 52.381 0.00 0.00 0.00 4.85
2811 3634 6.872920 TCCGCCTGAATTTAGCAAAATAAAT 58.127 32.000 0.00 0.00 37.02 1.40
2837 3660 2.949644 GGTTATTTCTGTAGGCCGCATT 59.050 45.455 0.00 0.00 0.00 3.56
2846 3669 6.216801 AGATGTACTGCGGTTATTTCTGTA 57.783 37.500 1.99 0.00 0.00 2.74
2860 3683 7.456253 CGTTATTTTCCACTGAAGATGTACTG 58.544 38.462 0.00 0.00 0.00 2.74
2861 3684 6.092259 GCGTTATTTTCCACTGAAGATGTACT 59.908 38.462 0.00 0.00 0.00 2.73
2863 3686 5.062934 CGCGTTATTTTCCACTGAAGATGTA 59.937 40.000 0.00 0.00 0.00 2.29
2864 3687 4.142902 CGCGTTATTTTCCACTGAAGATGT 60.143 41.667 0.00 0.00 0.00 3.06
2865 3688 4.092821 TCGCGTTATTTTCCACTGAAGATG 59.907 41.667 5.77 0.00 0.00 2.90
2880 3709 3.063997 CCAGCTTTCAATCTTCGCGTTAT 59.936 43.478 5.77 0.00 0.00 1.89
2916 3746 6.657541 CAGGCAAAACTTTCTGTTACCCTATA 59.342 38.462 0.00 0.00 38.03 1.31
2923 3753 3.295973 AGGCAGGCAAAACTTTCTGTTA 58.704 40.909 0.00 0.00 38.03 2.41
2932 3762 0.319297 CAAGCAGAGGCAGGCAAAAC 60.319 55.000 0.00 0.00 44.61 2.43
3110 3946 2.335011 CACCAGTCGCGACTCACA 59.665 61.111 37.41 0.00 40.20 3.58
3177 4013 5.667466 AGTAGAGTTGGACTTCGTTTTTGA 58.333 37.500 0.00 0.00 0.00 2.69
3178 4014 5.986004 AGTAGAGTTGGACTTCGTTTTTG 57.014 39.130 0.00 0.00 0.00 2.44
3237 4241 6.852664 ACAAATAAGCCAGCACACTTATAAC 58.147 36.000 5.80 0.00 37.96 1.89
3238 4242 7.312154 CAACAAATAAGCCAGCACACTTATAA 58.688 34.615 5.80 0.00 37.96 0.98
3266 4270 3.181463 CCGAGACAGCTCCTACTAGTACT 60.181 52.174 0.00 0.00 37.91 2.73
3267 4271 3.132925 CCGAGACAGCTCCTACTAGTAC 58.867 54.545 0.00 0.00 37.91 2.73
3268 4272 2.770802 ACCGAGACAGCTCCTACTAGTA 59.229 50.000 1.89 1.89 37.91 1.82
3269 4273 1.560611 ACCGAGACAGCTCCTACTAGT 59.439 52.381 0.00 0.00 37.91 2.57
3270 4274 2.335316 ACCGAGACAGCTCCTACTAG 57.665 55.000 0.00 0.00 37.91 2.57
3271 4275 2.641305 GAACCGAGACAGCTCCTACTA 58.359 52.381 0.00 0.00 37.91 1.82
3277 4281 1.433534 CAAAGGAACCGAGACAGCTC 58.566 55.000 0.00 0.00 37.81 4.09
3288 4292 5.066893 TCTCATAGATGCAATGCAAAGGAAC 59.933 40.000 13.45 0.15 43.62 3.62
3348 4355 4.594123 TCACGTGGAATCACTGTTAAGA 57.406 40.909 17.00 0.00 41.53 2.10
3444 4455 7.606349 AGCTCCAGGAAAATTGAGAAAAATAC 58.394 34.615 0.00 0.00 0.00 1.89
3448 4459 5.011023 GGAAGCTCCAGGAAAATTGAGAAAA 59.989 40.000 0.00 0.00 36.28 2.29
3477 4488 5.615984 GCACAGCATCAACCAAAATGATTTG 60.616 40.000 0.00 0.00 44.50 2.32
3514 4525 1.135315 CGTCCCGGTAATTGTTCTCGA 60.135 52.381 0.00 0.00 0.00 4.04
3587 4598 1.892819 CGCCTCTCACCAGTCACCAT 61.893 60.000 0.00 0.00 0.00 3.55
3594 4605 2.422231 CCTCCTCGCCTCTCACCAG 61.422 68.421 0.00 0.00 0.00 4.00
3595 4606 2.363018 CCTCCTCGCCTCTCACCA 60.363 66.667 0.00 0.00 0.00 4.17
3596 4607 2.043852 TCCTCCTCGCCTCTCACC 60.044 66.667 0.00 0.00 0.00 4.02
3597 4608 2.419739 GGTCCTCCTCGCCTCTCAC 61.420 68.421 0.00 0.00 0.00 3.51
3598 4609 2.043852 GGTCCTCCTCGCCTCTCA 60.044 66.667 0.00 0.00 0.00 3.27
3599 4610 2.835895 GGGTCCTCCTCGCCTCTC 60.836 72.222 0.00 0.00 0.00 3.20
3614 4625 2.092914 AGTTAGCAAAATCCTCTCCGGG 60.093 50.000 0.00 0.00 0.00 5.73
3616 4627 5.012328 ACTAGTTAGCAAAATCCTCTCCG 57.988 43.478 0.00 0.00 0.00 4.63
3648 4661 2.354729 CTGGGTTGATTCGCCCCA 59.645 61.111 11.47 11.47 46.17 4.96
3654 4667 1.404391 CATGAGCAGCTGGGTTGATTC 59.596 52.381 17.12 0.00 0.00 2.52
3718 4731 2.417379 GCTCCGATCTCAGCTTAACACA 60.417 50.000 5.68 0.00 32.48 3.72
3720 4733 2.103373 AGCTCCGATCTCAGCTTAACA 58.897 47.619 9.01 0.00 43.80 2.41
3737 4754 8.394822 TCTAATGATGAGTATACCCTCTAAGCT 58.605 37.037 0.00 0.00 32.50 3.74
3793 4811 2.148916 TGCAGTACGTCCAACAGAAG 57.851 50.000 0.00 0.00 0.00 2.85
3867 4885 9.533253 AAACAGGACAAACAAAGATGAAAATAG 57.467 29.630 0.00 0.00 0.00 1.73
3885 4903 7.494625 TCAGTTGATTCGGATAATAAACAGGAC 59.505 37.037 0.00 0.00 0.00 3.85
3988 5006 4.100189 TCCTCCTAATAAGAAGCAGCTGAC 59.900 45.833 20.43 9.11 0.00 3.51
4141 5399 3.967332 TTTTCGGACGAAGGGAGTATT 57.033 42.857 7.25 0.00 35.38 1.89
4142 5400 4.648307 AGTATTTTCGGACGAAGGGAGTAT 59.352 41.667 7.25 0.19 35.38 2.12
4143 5401 4.019174 AGTATTTTCGGACGAAGGGAGTA 58.981 43.478 7.25 0.00 35.38 2.59
4144 5402 2.830321 AGTATTTTCGGACGAAGGGAGT 59.170 45.455 7.25 0.00 35.38 3.85
4145 5403 3.521947 AGTATTTTCGGACGAAGGGAG 57.478 47.619 7.25 0.00 35.38 4.30
4146 5404 3.007182 ACAAGTATTTTCGGACGAAGGGA 59.993 43.478 7.25 0.00 35.38 4.20
4147 5405 3.332034 ACAAGTATTTTCGGACGAAGGG 58.668 45.455 7.25 0.00 35.38 3.95
4148 5406 3.991773 TGACAAGTATTTTCGGACGAAGG 59.008 43.478 7.25 0.00 35.38 3.46
4149 5407 5.347635 TGATGACAAGTATTTTCGGACGAAG 59.652 40.000 7.25 0.00 35.38 3.79
4150 5408 5.231702 TGATGACAAGTATTTTCGGACGAA 58.768 37.500 2.62 2.62 0.00 3.85
4151 5409 4.811908 TGATGACAAGTATTTTCGGACGA 58.188 39.130 0.00 0.00 0.00 4.20
4152 5410 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4153 5411 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4154 5412 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4155 5413 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4156 5414 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4163 5421 8.526147 CCTCTTTTATCCATTTTGATGACAAGT 58.474 33.333 0.00 0.00 37.32 3.16
4164 5422 8.742777 TCCTCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
4165 5423 8.648698 TCCTCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
4166 5424 8.689061 CATCCTCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 0.00 3.58
4167 5425 8.689972 ACATCCTCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 32.39 3.06
4168 5426 8.827832 ACATCCTCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 32.39 2.92
4176 5434 8.744652 CGTCTAGATACATCCTCTTTTATCCAT 58.255 37.037 0.00 0.00 0.00 3.41
4177 5435 7.942894 TCGTCTAGATACATCCTCTTTTATCCA 59.057 37.037 0.00 0.00 0.00 3.41
4178 5436 8.338072 TCGTCTAGATACATCCTCTTTTATCC 57.662 38.462 0.00 0.00 0.00 2.59
4179 5437 9.781834 CATCGTCTAGATACATCCTCTTTTATC 57.218 37.037 0.00 0.00 37.52 1.75
4180 5438 9.303116 ACATCGTCTAGATACATCCTCTTTTAT 57.697 33.333 0.00 0.00 37.52 1.40
4181 5439 8.693120 ACATCGTCTAGATACATCCTCTTTTA 57.307 34.615 0.00 0.00 37.52 1.52
4182 5440 7.589958 ACATCGTCTAGATACATCCTCTTTT 57.410 36.000 0.00 0.00 37.52 2.27
4183 5441 7.589958 AACATCGTCTAGATACATCCTCTTT 57.410 36.000 0.00 0.00 37.52 2.52
4184 5442 7.589958 AAACATCGTCTAGATACATCCTCTT 57.410 36.000 0.00 0.00 37.52 2.85
4185 5443 7.589958 AAAACATCGTCTAGATACATCCTCT 57.410 36.000 0.00 0.00 37.52 3.69
4186 5444 8.569641 ACTAAAACATCGTCTAGATACATCCTC 58.430 37.037 0.00 0.00 37.52 3.71
4187 5445 8.466617 ACTAAAACATCGTCTAGATACATCCT 57.533 34.615 0.00 0.00 37.52 3.24
4188 5446 9.530633 AAACTAAAACATCGTCTAGATACATCC 57.469 33.333 0.00 0.00 37.52 3.51
4232 5490 8.413229 CCGGAAATACTTGTCATTAAAATGGAT 58.587 33.333 0.00 0.00 37.03 3.41
4233 5491 7.612244 TCCGGAAATACTTGTCATTAAAATGGA 59.388 33.333 0.00 0.00 37.03 3.41
4234 5492 7.700656 GTCCGGAAATACTTGTCATTAAAATGG 59.299 37.037 5.23 0.00 37.03 3.16
4235 5493 7.428183 CGTCCGGAAATACTTGTCATTAAAATG 59.572 37.037 5.23 0.00 37.75 2.32
4236 5494 7.414762 CCGTCCGGAAATACTTGTCATTAAAAT 60.415 37.037 5.23 0.00 37.50 1.82
4237 5495 6.128227 CCGTCCGGAAATACTTGTCATTAAAA 60.128 38.462 5.23 0.00 37.50 1.52
4238 5496 5.352016 CCGTCCGGAAATACTTGTCATTAAA 59.648 40.000 5.23 0.00 37.50 1.52
4239 5497 4.871557 CCGTCCGGAAATACTTGTCATTAA 59.128 41.667 5.23 0.00 37.50 1.40
4240 5498 4.160065 TCCGTCCGGAAATACTTGTCATTA 59.840 41.667 5.23 0.00 42.05 1.90
4241 5499 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
4242 5500 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4243 5501 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4244 5502 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4245 5503 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4246 5504 1.479323 TCCTCCGTCCGGAAATACTTG 59.521 52.381 5.23 0.00 44.66 3.16
4247 5505 1.856629 TCCTCCGTCCGGAAATACTT 58.143 50.000 5.23 0.00 44.66 2.24
4248 5506 1.755380 CTTCCTCCGTCCGGAAATACT 59.245 52.381 5.23 0.00 44.66 2.12
4249 5507 1.479730 ACTTCCTCCGTCCGGAAATAC 59.520 52.381 5.23 0.00 44.66 1.89
4250 5508 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
4251 5509 1.479730 GTACTTCCTCCGTCCGGAAAT 59.520 52.381 5.23 0.00 44.66 2.17
4252 5510 0.890683 GTACTTCCTCCGTCCGGAAA 59.109 55.000 5.23 1.47 44.66 3.13
4253 5511 0.038744 AGTACTTCCTCCGTCCGGAA 59.961 55.000 5.23 0.00 44.66 4.30
4254 5512 0.911769 TAGTACTTCCTCCGTCCGGA 59.088 55.000 0.00 0.00 42.90 5.14
4255 5513 1.878734 GATAGTACTTCCTCCGTCCGG 59.121 57.143 0.00 0.00 0.00 5.14
4256 5514 2.569059 TGATAGTACTTCCTCCGTCCG 58.431 52.381 0.00 0.00 0.00 4.79
4257 5515 4.996788 TTTGATAGTACTTCCTCCGTCC 57.003 45.455 0.00 0.00 0.00 4.79
4258 5516 7.486647 TGTTATTTGATAGTACTTCCTCCGTC 58.513 38.462 0.00 0.00 0.00 4.79
4259 5517 7.123847 ACTGTTATTTGATAGTACTTCCTCCGT 59.876 37.037 0.00 0.00 0.00 4.69
4260 5518 7.490000 ACTGTTATTTGATAGTACTTCCTCCG 58.510 38.462 0.00 0.00 0.00 4.63
4261 5519 9.668497 AAACTGTTATTTGATAGTACTTCCTCC 57.332 33.333 0.00 0.00 0.00 4.30
4264 5522 9.556030 GCAAAACTGTTATTTGATAGTACTTCC 57.444 33.333 0.00 0.00 39.56 3.46
4273 5531 9.066892 TGAGTTCTAGCAAAACTGTTATTTGAT 57.933 29.630 8.69 5.32 39.56 2.57
4274 5532 8.445275 TGAGTTCTAGCAAAACTGTTATTTGA 57.555 30.769 8.69 0.00 39.56 2.69
4275 5533 9.334693 GATGAGTTCTAGCAAAACTGTTATTTG 57.665 33.333 0.32 0.00 37.10 2.32
4276 5534 9.289782 AGATGAGTTCTAGCAAAACTGTTATTT 57.710 29.630 0.32 0.00 37.10 1.40
4277 5535 8.854614 AGATGAGTTCTAGCAAAACTGTTATT 57.145 30.769 0.32 0.00 37.10 1.40
4278 5536 9.593134 CTAGATGAGTTCTAGCAAAACTGTTAT 57.407 33.333 0.32 0.00 45.63 1.89
4279 5537 8.988064 CTAGATGAGTTCTAGCAAAACTGTTA 57.012 34.615 0.32 0.00 45.63 2.41
4280 5538 7.897575 CTAGATGAGTTCTAGCAAAACTGTT 57.102 36.000 0.32 0.00 45.63 3.16
4307 5565 9.566432 AAGGTGAATGAGACCAAATTATATCTC 57.434 33.333 0.00 6.03 38.46 2.75
4308 5566 9.927081 AAAGGTGAATGAGACCAAATTATATCT 57.073 29.630 0.00 0.00 35.76 1.98
4314 5572 9.533831 ACTATAAAAGGTGAATGAGACCAAATT 57.466 29.630 0.00 0.00 35.76 1.82
4315 5573 9.178758 GACTATAAAAGGTGAATGAGACCAAAT 57.821 33.333 0.00 0.00 35.76 2.32
4316 5574 8.160765 TGACTATAAAAGGTGAATGAGACCAAA 58.839 33.333 0.00 0.00 35.76 3.28
4317 5575 7.685481 TGACTATAAAAGGTGAATGAGACCAA 58.315 34.615 0.00 0.00 35.76 3.67
4318 5576 7.252612 TGACTATAAAAGGTGAATGAGACCA 57.747 36.000 0.00 0.00 35.76 4.02
4319 5577 8.738645 AATGACTATAAAAGGTGAATGAGACC 57.261 34.615 0.00 0.00 0.00 3.85
4340 5598 9.688592 CGCATCTTATAGCATCATATCTAATGA 57.311 33.333 0.00 0.00 0.00 2.57
4341 5599 9.473640 ACGCATCTTATAGCATCATATCTAATG 57.526 33.333 0.00 0.00 0.00 1.90
4342 5600 9.473640 CACGCATCTTATAGCATCATATCTAAT 57.526 33.333 0.00 0.00 0.00 1.73
4343 5601 8.470002 ACACGCATCTTATAGCATCATATCTAA 58.530 33.333 0.00 0.00 0.00 2.10
4344 5602 7.917505 CACACGCATCTTATAGCATCATATCTA 59.082 37.037 0.00 0.00 0.00 1.98
4345 5603 6.755607 CACACGCATCTTATAGCATCATATCT 59.244 38.462 0.00 0.00 0.00 1.98
4346 5604 6.533012 ACACACGCATCTTATAGCATCATATC 59.467 38.462 0.00 0.00 0.00 1.63
4347 5605 6.312180 CACACACGCATCTTATAGCATCATAT 59.688 38.462 0.00 0.00 0.00 1.78
4348 5606 5.634859 CACACACGCATCTTATAGCATCATA 59.365 40.000 0.00 0.00 0.00 2.15
4349 5607 4.450080 CACACACGCATCTTATAGCATCAT 59.550 41.667 0.00 0.00 0.00 2.45
4350 5608 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
4351 5609 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
4352 5610 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
4353 5611 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
4354 5612 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
4355 5613 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
4356 5614 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
4357 5615 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
4358 5616 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
4359 5617 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
4360 5618 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
4361 5619 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
4362 5620 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
4363 5621 2.615262 TACACGTCAGCACACACGCA 62.615 55.000 0.00 0.00 39.73 5.24
4364 5622 1.282248 ATACACGTCAGCACACACGC 61.282 55.000 0.00 0.00 39.73 5.34
4365 5623 1.136639 CAATACACGTCAGCACACACG 60.137 52.381 0.00 0.00 41.90 4.49
4366 5624 1.864711 ACAATACACGTCAGCACACAC 59.135 47.619 0.00 0.00 0.00 3.82
4367 5625 2.232756 ACAATACACGTCAGCACACA 57.767 45.000 0.00 0.00 0.00 3.72
4368 5626 4.174009 AGATACAATACACGTCAGCACAC 58.826 43.478 0.00 0.00 0.00 3.82
4369 5627 4.450082 AGATACAATACACGTCAGCACA 57.550 40.909 0.00 0.00 0.00 4.57
4370 5628 7.464830 AAATAGATACAATACACGTCAGCAC 57.535 36.000 0.00 0.00 0.00 4.40
4371 5629 8.487313 AAAAATAGATACAATACACGTCAGCA 57.513 30.769 0.00 0.00 0.00 4.41
4403 5661 9.566432 GAGATATAATTTGGTCTCATCCACTTT 57.434 33.333 8.11 0.00 37.60 2.66
4404 5662 8.717717 TGAGATATAATTTGGTCTCATCCACTT 58.282 33.333 10.50 0.00 41.40 3.16
4405 5663 8.267620 TGAGATATAATTTGGTCTCATCCACT 57.732 34.615 10.50 0.00 41.40 4.00
4428 5686 8.330247 GGGAGTACCTATAACTCATCTAGATGA 58.670 40.741 29.17 29.17 44.25 2.92
4429 5687 8.110271 TGGGAGTACCTATAACTCATCTAGATG 58.890 40.741 24.32 24.32 44.25 2.90
4430 5688 8.233349 TGGGAGTACCTATAACTCATCTAGAT 57.767 38.462 0.00 0.00 44.25 1.98
4431 5689 7.643612 TGGGAGTACCTATAACTCATCTAGA 57.356 40.000 0.00 0.00 44.25 2.43
4432 5690 8.110271 TGATGGGAGTACCTATAACTCATCTAG 58.890 40.741 0.00 0.00 44.25 2.43
4433 5691 7.996788 TGATGGGAGTACCTATAACTCATCTA 58.003 38.462 0.00 0.00 44.25 1.98
4434 5692 6.864421 TGATGGGAGTACCTATAACTCATCT 58.136 40.000 0.00 0.00 44.25 2.90
4435 5693 7.540474 TTGATGGGAGTACCTATAACTCATC 57.460 40.000 5.67 0.00 44.25 2.92
4436 5694 7.931015 TTTGATGGGAGTACCTATAACTCAT 57.069 36.000 5.67 0.00 44.25 2.90
4437 5695 7.931015 ATTTGATGGGAGTACCTATAACTCA 57.069 36.000 5.67 0.00 44.25 3.41
4440 5698 9.449719 CCATTATTTGATGGGAGTACCTATAAC 57.550 37.037 0.00 0.00 42.36 1.89
4454 5712 7.537715 TCACAGTGCTAAACCATTATTTGATG 58.462 34.615 0.00 0.00 0.00 3.07
4455 5713 7.701539 TCACAGTGCTAAACCATTATTTGAT 57.298 32.000 0.00 0.00 0.00 2.57
4456 5714 7.701539 ATCACAGTGCTAAACCATTATTTGA 57.298 32.000 0.00 0.00 0.00 2.69
4457 5715 7.814107 ACAATCACAGTGCTAAACCATTATTTG 59.186 33.333 0.00 0.00 0.00 2.32
4458 5716 7.814107 CACAATCACAGTGCTAAACCATTATTT 59.186 33.333 0.00 0.00 0.00 1.40
4459 5717 7.176515 TCACAATCACAGTGCTAAACCATTATT 59.823 33.333 0.00 0.00 36.93 1.40
4460 5718 6.658816 TCACAATCACAGTGCTAAACCATTAT 59.341 34.615 0.00 0.00 36.93 1.28
4461 5719 6.000840 TCACAATCACAGTGCTAAACCATTA 58.999 36.000 0.00 0.00 36.93 1.90
4559 5843 1.468914 GGGCAAAGCTTACAGCAGTAC 59.531 52.381 16.96 0.00 45.56 2.73
4575 5860 2.103432 CTGTGTATAATGGTACCGGGCA 59.897 50.000 6.32 0.00 0.00 5.36
4582 5867 7.061566 TGCTAAGATGCTGTGTATAATGGTA 57.938 36.000 0.00 0.00 0.00 3.25
4583 5868 5.928976 TGCTAAGATGCTGTGTATAATGGT 58.071 37.500 0.00 0.00 0.00 3.55
4584 5869 5.994054 ACTGCTAAGATGCTGTGTATAATGG 59.006 40.000 0.00 0.00 42.14 3.16
4585 5870 7.148672 GCTACTGCTAAGATGCTGTGTATAATG 60.149 40.741 8.80 0.00 43.23 1.90
4586 5871 6.870965 GCTACTGCTAAGATGCTGTGTATAAT 59.129 38.462 8.80 0.00 43.23 1.28
4587 5872 6.216569 GCTACTGCTAAGATGCTGTGTATAA 58.783 40.000 8.80 0.00 43.23 0.98
4588 5873 5.562890 CGCTACTGCTAAGATGCTGTGTATA 60.563 44.000 8.80 0.00 43.23 1.47
4589 5874 4.626042 GCTACTGCTAAGATGCTGTGTAT 58.374 43.478 8.80 0.00 43.23 2.29
4590 5875 3.489229 CGCTACTGCTAAGATGCTGTGTA 60.489 47.826 8.80 0.40 43.23 2.90
4591 5876 2.736719 CGCTACTGCTAAGATGCTGTGT 60.737 50.000 8.80 0.00 43.23 3.72
4592 5877 1.857217 CGCTACTGCTAAGATGCTGTG 59.143 52.381 8.80 2.07 43.23 3.66
4593 5878 1.804372 GCGCTACTGCTAAGATGCTGT 60.804 52.381 0.00 0.00 44.90 4.40
4594 5879 0.857935 GCGCTACTGCTAAGATGCTG 59.142 55.000 0.00 0.00 36.97 4.41
4595 5880 0.749649 AGCGCTACTGCTAAGATGCT 59.250 50.000 8.99 0.00 45.14 3.79
4596 5881 0.857935 CAGCGCTACTGCTAAGATGC 59.142 55.000 10.99 0.00 45.23 3.91
4597 5882 1.067669 TCCAGCGCTACTGCTAAGATG 59.932 52.381 10.99 0.00 45.23 2.90
4598 5883 1.067821 GTCCAGCGCTACTGCTAAGAT 59.932 52.381 10.99 0.00 45.23 2.40
4599 5884 0.456221 GTCCAGCGCTACTGCTAAGA 59.544 55.000 10.99 0.00 45.23 2.10
4600 5885 0.173481 TGTCCAGCGCTACTGCTAAG 59.827 55.000 10.99 0.00 45.23 2.18
4601 5886 0.606096 TTGTCCAGCGCTACTGCTAA 59.394 50.000 10.99 0.00 45.23 3.09
4602 5887 0.606096 TTTGTCCAGCGCTACTGCTA 59.394 50.000 10.99 0.00 45.23 3.49
4604 5889 0.110192 GTTTTGTCCAGCGCTACTGC 60.110 55.000 10.99 1.04 45.78 4.40
4605 5890 1.195448 CTGTTTTGTCCAGCGCTACTG 59.805 52.381 10.99 2.85 46.77 2.74
4606 5891 1.512926 CTGTTTTGTCCAGCGCTACT 58.487 50.000 10.99 0.00 0.00 2.57
4607 5892 0.517316 CCTGTTTTGTCCAGCGCTAC 59.483 55.000 10.99 6.46 0.00 3.58
4608 5893 0.605319 CCCTGTTTTGTCCAGCGCTA 60.605 55.000 10.99 0.00 0.00 4.26
4609 5894 1.898574 CCCTGTTTTGTCCAGCGCT 60.899 57.895 2.64 2.64 0.00 5.92
4610 5895 2.644992 CCCTGTTTTGTCCAGCGC 59.355 61.111 0.00 0.00 0.00 5.92
4611 5896 2.644992 GCCCTGTTTTGTCCAGCG 59.355 61.111 0.00 0.00 0.00 5.18
4612 5897 2.644992 CGCCCTGTTTTGTCCAGC 59.355 61.111 0.00 0.00 0.00 4.85
4613 5898 0.605319 TAGCGCCCTGTTTTGTCCAG 60.605 55.000 2.29 0.00 0.00 3.86
4614 5899 0.887387 GTAGCGCCCTGTTTTGTCCA 60.887 55.000 2.29 0.00 0.00 4.02
4615 5900 0.605589 AGTAGCGCCCTGTTTTGTCC 60.606 55.000 2.29 0.00 0.00 4.02
4616 5901 0.517316 CAGTAGCGCCCTGTTTTGTC 59.483 55.000 14.74 0.00 0.00 3.18
4617 5902 1.515521 GCAGTAGCGCCCTGTTTTGT 61.516 55.000 21.52 0.00 32.41 2.83
4618 5903 1.210155 GCAGTAGCGCCCTGTTTTG 59.790 57.895 21.52 6.04 32.41 2.44
4619 5904 3.668386 GCAGTAGCGCCCTGTTTT 58.332 55.556 21.52 0.00 32.41 2.43
4623 5908 7.956410 TACTATTAAGTAGCAGTAGCGCCCTG 61.956 46.154 17.79 17.79 40.65 4.45
4624 5909 5.980127 TACTATTAAGTAGCAGTAGCGCCCT 60.980 44.000 2.29 0.00 40.65 5.19
4625 5910 4.217118 TACTATTAAGTAGCAGTAGCGCCC 59.783 45.833 2.29 0.00 40.65 6.13
4626 5911 5.368256 TACTATTAAGTAGCAGTAGCGCC 57.632 43.478 2.29 0.00 40.65 6.53
4650 5935 3.378959 AGCGCGGTTTATTTAAACTCG 57.621 42.857 4.23 14.46 43.73 4.18
4651 5936 5.253335 CAGTAGCGCGGTTTATTTAAACTC 58.747 41.667 19.09 0.00 43.73 3.01
4652 5937 5.212589 CAGTAGCGCGGTTTATTTAAACT 57.787 39.130 19.09 8.36 43.73 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.