Multiple sequence alignment - TraesCS7B01G151000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G151000 chr7B 100.000 4405 0 0 1 4405 200354849 200359253 0.000000e+00 8135
1 TraesCS7B01G151000 chr7B 97.446 3798 69 7 1 3776 130341081 130337290 0.000000e+00 6451
2 TraesCS7B01G151000 chr7B 94.293 3119 134 9 684 3771 27333077 27329972 0.000000e+00 4734
3 TraesCS7B01G151000 chr7B 96.522 230 8 0 3945 4174 130330936 130330707 8.940000e-102 381
4 TraesCS7B01G151000 chr7B 96.087 230 9 0 3945 4174 235460968 235461197 4.160000e-100 375
5 TraesCS7B01G151000 chr7B 96.053 152 6 0 3703 3854 130337321 130337170 9.460000e-62 248
6 TraesCS7B01G151000 chr7B 95.862 145 6 0 3828 3972 130336029 130335885 7.370000e-58 235
7 TraesCS7B01G151000 chr3B 97.307 4196 85 7 1 4173 435966888 435962698 0.000000e+00 7097
8 TraesCS7B01G151000 chr3B 97.213 4198 85 10 1 4176 422227201 422231388 0.000000e+00 7075
9 TraesCS7B01G151000 chr3B 94.345 3448 145 28 1 3414 16117391 16120822 0.000000e+00 5241
10 TraesCS7B01G151000 chr3B 97.537 203 5 0 3574 3776 393332618 393332416 9.070000e-92 348
11 TraesCS7B01G151000 chr4B 97.365 4175 80 9 1 4152 291844815 291840648 0.000000e+00 7073
12 TraesCS7B01G151000 chr4B 94.259 3449 148 30 1 3414 402766894 402770327 0.000000e+00 5227
13 TraesCS7B01G151000 chr4B 97.095 2685 59 2 1188 3854 49111532 49108849 0.000000e+00 4508
14 TraesCS7B01G151000 chr2B 97.034 4214 78 12 1 4172 689376786 689380994 0.000000e+00 7046
15 TraesCS7B01G151000 chr2B 96.507 229 8 0 3945 4173 711453992 711454220 3.220000e-101 379
16 TraesCS7B01G151000 chr2B 95.633 229 10 0 3945 4173 153870365 153870593 6.960000e-98 368
17 TraesCS7B01G151000 chr2B 96.552 145 5 0 3828 3972 45598048 45597904 1.580000e-59 241
18 TraesCS7B01G151000 chr2B 95.862 145 6 0 3828 3972 153867162 153867018 7.370000e-58 235
19 TraesCS7B01G151000 chr6B 94.278 3827 148 27 1 3774 661059030 661055222 0.000000e+00 5788
20 TraesCS7B01G151000 chr6B 94.399 3446 151 21 1 3414 687508036 687511471 0.000000e+00 5256
21 TraesCS7B01G151000 chr6B 96.088 409 15 1 3446 3854 114141223 114141630 0.000000e+00 665
22 TraesCS7B01G151000 chr1B 92.356 1897 102 16 1906 3772 623650544 623648661 0.000000e+00 2660
23 TraesCS7B01G151000 chr1B 95.633 229 10 0 3945 4173 550443002 550443230 6.960000e-98 368
24 TraesCS7B01G151000 chr1B 96.552 145 5 0 3828 3972 357900151 357900295 1.580000e-59 241
25 TraesCS7B01G151000 chr1B 94.194 155 9 0 3700 3854 357898789 357898943 2.050000e-58 237
26 TraesCS7B01G151000 chr7A 93.590 234 11 2 4176 4405 241665711 241665944 3.260000e-91 346
27 TraesCS7B01G151000 chr7D 92.405 237 11 3 4176 4405 229790659 229790895 9.130000e-87 331
28 TraesCS7B01G151000 chrUn 94.737 152 8 0 3703 3854 17581937 17581786 2.050000e-58 237
29 TraesCS7B01G151000 chrUn 95.862 145 6 0 3828 3972 17580529 17580385 7.370000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G151000 chr7B 200354849 200359253 4404 False 8135.000000 8135 100.000000 1 4405 1 chr7B.!!$F1 4404
1 TraesCS7B01G151000 chr7B 27329972 27333077 3105 True 4734.000000 4734 94.293000 684 3771 1 chr7B.!!$R1 3087
2 TraesCS7B01G151000 chr7B 130335885 130341081 5196 True 2311.333333 6451 96.453667 1 3972 3 chr7B.!!$R3 3971
3 TraesCS7B01G151000 chr3B 435962698 435966888 4190 True 7097.000000 7097 97.307000 1 4173 1 chr3B.!!$R2 4172
4 TraesCS7B01G151000 chr3B 422227201 422231388 4187 False 7075.000000 7075 97.213000 1 4176 1 chr3B.!!$F2 4175
5 TraesCS7B01G151000 chr3B 16117391 16120822 3431 False 5241.000000 5241 94.345000 1 3414 1 chr3B.!!$F1 3413
6 TraesCS7B01G151000 chr4B 291840648 291844815 4167 True 7073.000000 7073 97.365000 1 4152 1 chr4B.!!$R2 4151
7 TraesCS7B01G151000 chr4B 402766894 402770327 3433 False 5227.000000 5227 94.259000 1 3414 1 chr4B.!!$F1 3413
8 TraesCS7B01G151000 chr4B 49108849 49111532 2683 True 4508.000000 4508 97.095000 1188 3854 1 chr4B.!!$R1 2666
9 TraesCS7B01G151000 chr2B 689376786 689380994 4208 False 7046.000000 7046 97.034000 1 4172 1 chr2B.!!$F2 4171
10 TraesCS7B01G151000 chr6B 661055222 661059030 3808 True 5788.000000 5788 94.278000 1 3774 1 chr6B.!!$R1 3773
11 TraesCS7B01G151000 chr6B 687508036 687511471 3435 False 5256.000000 5256 94.399000 1 3414 1 chr6B.!!$F2 3413
12 TraesCS7B01G151000 chr1B 623648661 623650544 1883 True 2660.000000 2660 92.356000 1906 3772 1 chr1B.!!$R1 1866
13 TraesCS7B01G151000 chr1B 357898789 357900295 1506 False 239.000000 241 95.373000 3700 3972 2 chr1B.!!$F2 272
14 TraesCS7B01G151000 chrUn 17580385 17581937 1552 True 236.000000 237 95.299500 3703 3972 2 chrUn.!!$R1 269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 158 0.613292 AGCTTTCTCTCTCTCGCCCA 60.613 55.000 0.0 0.0 0.00 5.36 F
1237 1266 1.142870 TGGCTATGATAAGCGGCCTTT 59.857 47.619 0.0 0.0 43.74 3.11 F
2500 2530 0.407139 AAGCTGAAGCCTGGTTGGAT 59.593 50.000 0.0 0.0 43.38 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 1781 2.119484 AAATCAGGCCGTCCAACCGA 62.119 55.0 0.00 0.0 33.74 4.69 R
2980 3011 0.177141 TTTATTAGCTCTGGCGGCGT 59.823 50.0 9.37 0.0 44.37 5.68 R
4213 5586 0.036577 CTCAACTCAGCTCCCACCAG 60.037 60.0 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 158 0.613292 AGCTTTCTCTCTCTCGCCCA 60.613 55.000 0.00 0.00 0.00 5.36
166 178 3.308688 CCATCTTCTCCCTCACACCAAAT 60.309 47.826 0.00 0.00 0.00 2.32
167 179 3.703001 TCTTCTCCCTCACACCAAATC 57.297 47.619 0.00 0.00 0.00 2.17
168 180 2.305927 TCTTCTCCCTCACACCAAATCC 59.694 50.000 0.00 0.00 0.00 3.01
387 404 3.475566 TTGGTAGGCAGTAGATGATGC 57.524 47.619 0.00 0.00 41.80 3.91
414 431 6.449698 AGTTGAACATGTAGGCAAAATCAAG 58.550 36.000 0.00 0.00 29.97 3.02
418 435 3.763897 ACATGTAGGCAAAATCAAGTCCC 59.236 43.478 0.00 0.00 0.00 4.46
441 458 7.773224 TCCCTTTTGTGTATATGTTGTCCATAG 59.227 37.037 0.00 0.00 39.36 2.23
758 781 7.946381 TGGTTTGTTCATATGGCATAACTTA 57.054 32.000 11.86 0.00 0.00 2.24
987 1016 8.883954 TGATCAAAACATCACTTTATTTGCAA 57.116 26.923 0.00 0.00 32.47 4.08
1237 1266 1.142870 TGGCTATGATAAGCGGCCTTT 59.857 47.619 0.00 0.00 43.74 3.11
1362 1391 1.158484 CCGATACCGCGAGAGTGAGA 61.158 60.000 8.23 0.00 46.66 3.27
1455 1484 3.973516 TACGCGCGGGCCTATCTG 61.974 66.667 35.22 6.05 35.02 2.90
1752 1781 2.419198 GGATGTGCGAGCGGATCT 59.581 61.111 0.00 0.00 0.00 2.75
1766 1795 2.683933 ATCTCGGTTGGACGGCCT 60.684 61.111 9.82 0.00 34.31 5.19
2230 2259 6.011122 AGGAGGAAATGTTATCTCTGCATT 57.989 37.500 0.00 0.00 34.69 3.56
2395 2425 8.193438 GTGGATAGAAATTTGGAATCAAAGAGG 58.807 37.037 0.00 0.00 44.87 3.69
2500 2530 0.407139 AAGCTGAAGCCTGGTTGGAT 59.593 50.000 0.00 0.00 43.38 3.41
2655 2685 7.556844 AGTCTGTTTGACCGATTCTAACATAT 58.443 34.615 12.01 2.88 45.23 1.78
2980 3011 0.251916 GTGTATGCACCTGGTAGCCA 59.748 55.000 15.42 7.42 39.61 4.75
3454 3534 7.041098 AGCTTGTTCTAGTTTGTTTCGATGAAT 60.041 33.333 0.00 0.00 0.00 2.57
3468 3548 5.661056 TCGATGAATTTGGTGTAGTCTCT 57.339 39.130 0.00 0.00 0.00 3.10
3473 3553 7.095229 CGATGAATTTGGTGTAGTCTCTTTTCA 60.095 37.037 0.00 0.00 0.00 2.69
3554 3634 5.220662 CGGATTCGTGAAGTTGCTATGAATT 60.221 40.000 0.00 0.00 31.99 2.17
3626 3706 6.951062 TGTGAATTGTTGTTTCCTGTGATA 57.049 33.333 0.00 0.00 0.00 2.15
3835 3992 1.063867 ACAGGATAGGTACCAGACGCT 60.064 52.381 15.94 0.00 0.00 5.07
4067 5440 2.665185 GCTTCGCAACCCAGACGT 60.665 61.111 0.00 0.00 0.00 4.34
4132 5505 4.812091 TCTTTTGAAACGAGGTCAAATCGA 59.188 37.500 11.63 0.00 42.82 3.59
4175 5548 8.281212 AGATCATAACAGTAATTTTGTCCCAC 57.719 34.615 0.00 0.00 0.00 4.61
4176 5549 6.489127 TCATAACAGTAATTTTGTCCCACG 57.511 37.500 0.00 0.00 0.00 4.94
4177 5550 3.636282 AACAGTAATTTTGTCCCACGC 57.364 42.857 0.00 0.00 0.00 5.34
4178 5551 1.883926 ACAGTAATTTTGTCCCACGCC 59.116 47.619 0.00 0.00 0.00 5.68
4179 5552 1.201414 CAGTAATTTTGTCCCACGCCC 59.799 52.381 0.00 0.00 0.00 6.13
4180 5553 0.169451 GTAATTTTGTCCCACGCCCG 59.831 55.000 0.00 0.00 0.00 6.13
4181 5554 0.250814 TAATTTTGTCCCACGCCCGT 60.251 50.000 0.00 0.00 0.00 5.28
4182 5555 1.520600 AATTTTGTCCCACGCCCGTC 61.521 55.000 0.00 0.00 0.00 4.79
4183 5556 2.406002 ATTTTGTCCCACGCCCGTCT 62.406 55.000 0.00 0.00 0.00 4.18
4184 5557 3.818121 TTTGTCCCACGCCCGTCTG 62.818 63.158 0.00 0.00 0.00 3.51
4195 5568 3.538614 CCGTCTGGGATGGTCGAT 58.461 61.111 0.00 0.00 38.47 3.59
4196 5569 1.364171 CCGTCTGGGATGGTCGATC 59.636 63.158 0.00 0.00 38.47 3.69
4197 5570 1.109920 CCGTCTGGGATGGTCGATCT 61.110 60.000 0.00 0.00 38.47 2.75
4198 5571 0.312416 CGTCTGGGATGGTCGATCTC 59.688 60.000 0.00 0.00 31.20 2.75
4199 5572 0.676736 GTCTGGGATGGTCGATCTCC 59.323 60.000 0.00 1.30 29.04 3.71
4200 5573 0.823769 TCTGGGATGGTCGATCTCCG 60.824 60.000 0.00 0.00 40.25 4.63
4201 5574 0.823769 CTGGGATGGTCGATCTCCGA 60.824 60.000 0.00 0.00 46.35 4.55
4211 5584 3.269538 TCGATCTCCGACTCTTCTTCT 57.730 47.619 0.00 0.00 43.23 2.85
4212 5585 2.939756 TCGATCTCCGACTCTTCTTCTG 59.060 50.000 0.00 0.00 43.23 3.02
4213 5586 2.540769 CGATCTCCGACTCTTCTTCTGC 60.541 54.545 0.00 0.00 41.76 4.26
4214 5587 2.208132 TCTCCGACTCTTCTTCTGCT 57.792 50.000 0.00 0.00 0.00 4.24
4215 5588 1.815613 TCTCCGACTCTTCTTCTGCTG 59.184 52.381 0.00 0.00 0.00 4.41
4216 5589 0.891373 TCCGACTCTTCTTCTGCTGG 59.109 55.000 0.00 0.00 0.00 4.85
4217 5590 0.605589 CCGACTCTTCTTCTGCTGGT 59.394 55.000 0.00 0.00 0.00 4.00
4218 5591 1.671261 CCGACTCTTCTTCTGCTGGTG 60.671 57.143 0.00 0.00 0.00 4.17
4219 5592 1.671261 CGACTCTTCTTCTGCTGGTGG 60.671 57.143 0.00 0.00 0.00 4.61
4220 5593 0.689623 ACTCTTCTTCTGCTGGTGGG 59.310 55.000 0.00 0.00 0.00 4.61
4221 5594 0.979665 CTCTTCTTCTGCTGGTGGGA 59.020 55.000 0.00 0.00 0.00 4.37
4222 5595 0.979665 TCTTCTTCTGCTGGTGGGAG 59.020 55.000 0.00 0.00 34.52 4.30
4223 5596 0.676151 CTTCTTCTGCTGGTGGGAGC 60.676 60.000 0.00 0.00 39.62 4.70
4224 5597 1.130054 TTCTTCTGCTGGTGGGAGCT 61.130 55.000 0.00 0.00 39.90 4.09
4225 5598 1.376942 CTTCTGCTGGTGGGAGCTG 60.377 63.158 0.00 0.00 39.90 4.24
4226 5599 1.834856 CTTCTGCTGGTGGGAGCTGA 61.835 60.000 0.00 0.00 43.01 4.26
4227 5600 1.834856 TTCTGCTGGTGGGAGCTGAG 61.835 60.000 0.00 0.00 44.66 3.35
4228 5601 2.527624 TGCTGGTGGGAGCTGAGT 60.528 61.111 0.00 0.00 39.90 3.41
4229 5602 2.121992 CTGCTGGTGGGAGCTGAGTT 62.122 60.000 0.00 0.00 39.58 3.01
4230 5603 1.673665 GCTGGTGGGAGCTGAGTTG 60.674 63.158 0.00 0.00 35.95 3.16
4231 5604 2.061220 CTGGTGGGAGCTGAGTTGA 58.939 57.895 0.00 0.00 0.00 3.18
4232 5605 0.036577 CTGGTGGGAGCTGAGTTGAG 60.037 60.000 0.00 0.00 0.00 3.02
4233 5606 1.376553 GGTGGGAGCTGAGTTGAGC 60.377 63.158 0.00 0.00 39.46 4.26
4234 5607 1.376553 GTGGGAGCTGAGTTGAGCC 60.377 63.158 0.00 0.00 40.08 4.70
4235 5608 1.842920 TGGGAGCTGAGTTGAGCCA 60.843 57.895 0.00 0.00 40.08 4.75
4236 5609 1.376466 GGGAGCTGAGTTGAGCCAA 59.624 57.895 0.00 0.00 40.08 4.52
4237 5610 0.676151 GGGAGCTGAGTTGAGCCAAG 60.676 60.000 0.00 0.00 40.08 3.61
4238 5611 1.304509 GGAGCTGAGTTGAGCCAAGC 61.305 60.000 0.00 0.00 40.08 4.01
4239 5612 1.303155 AGCTGAGTTGAGCCAAGCC 60.303 57.895 0.00 0.00 40.08 4.35
4240 5613 1.601759 GCTGAGTTGAGCCAAGCCA 60.602 57.895 0.00 0.00 32.35 4.75
4241 5614 1.174712 GCTGAGTTGAGCCAAGCCAA 61.175 55.000 0.00 0.00 32.35 4.52
4242 5615 1.321474 CTGAGTTGAGCCAAGCCAAA 58.679 50.000 0.00 0.00 0.00 3.28
4243 5616 1.682854 CTGAGTTGAGCCAAGCCAAAA 59.317 47.619 0.00 0.00 0.00 2.44
4244 5617 1.682854 TGAGTTGAGCCAAGCCAAAAG 59.317 47.619 0.00 0.00 0.00 2.27
4245 5618 1.000171 GAGTTGAGCCAAGCCAAAAGG 60.000 52.381 0.00 0.00 0.00 3.11
4249 5622 4.377708 GCCAAGCCAAAAGGCCCG 62.378 66.667 0.00 0.00 42.58 6.13
4250 5623 4.377708 CCAAGCCAAAAGGCCCGC 62.378 66.667 0.00 0.00 35.12 6.13
4251 5624 4.722855 CAAGCCAAAAGGCCCGCG 62.723 66.667 0.00 0.00 35.12 6.46
4266 5639 3.435186 GCGGCTGGAAAGGCTGTC 61.435 66.667 0.00 0.00 38.25 3.51
4267 5640 2.032528 CGGCTGGAAAGGCTGTCA 59.967 61.111 7.07 0.00 0.00 3.58
4268 5641 2.037136 CGGCTGGAAAGGCTGTCAG 61.037 63.158 7.07 7.27 0.00 3.51
4269 5642 3.272031 GCTGGAAAGGCTGTCAGC 58.728 61.111 16.93 16.93 44.34 4.26
4270 5643 1.303155 GCTGGAAAGGCTGTCAGCT 60.303 57.895 23.68 4.68 46.29 4.24
4271 5644 1.584380 GCTGGAAAGGCTGTCAGCTG 61.584 60.000 23.68 7.63 46.29 4.24
4272 5645 1.584380 CTGGAAAGGCTGTCAGCTGC 61.584 60.000 23.68 10.62 41.99 5.25
4273 5646 1.303155 GGAAAGGCTGTCAGCTGCT 60.303 57.895 23.68 11.02 41.99 4.24
4274 5647 1.584380 GGAAAGGCTGTCAGCTGCTG 61.584 60.000 23.31 23.31 41.99 4.41
4275 5648 0.604780 GAAAGGCTGTCAGCTGCTGA 60.605 55.000 27.35 27.35 41.99 4.26
4276 5649 0.037877 AAAGGCTGTCAGCTGCTGAT 59.962 50.000 32.45 15.60 42.73 2.90
4277 5650 0.677098 AAGGCTGTCAGCTGCTGATG 60.677 55.000 32.45 26.73 42.73 3.07
4278 5651 2.762234 GGCTGTCAGCTGCTGATGC 61.762 63.158 32.87 32.87 42.73 3.91
4279 5652 1.745864 GCTGTCAGCTGCTGATGCT 60.746 57.895 33.09 2.71 42.73 3.79
4280 5653 1.306642 GCTGTCAGCTGCTGATGCTT 61.307 55.000 33.09 2.06 42.73 3.91
4281 5654 0.727970 CTGTCAGCTGCTGATGCTTC 59.272 55.000 32.45 20.34 42.73 3.86
4282 5655 0.323957 TGTCAGCTGCTGATGCTTCT 59.676 50.000 32.45 0.00 42.73 2.85
4283 5656 1.271217 TGTCAGCTGCTGATGCTTCTT 60.271 47.619 32.45 0.00 42.73 2.52
4284 5657 1.397692 GTCAGCTGCTGATGCTTCTTC 59.602 52.381 32.45 15.07 42.73 2.87
4285 5658 1.278413 TCAGCTGCTGATGCTTCTTCT 59.722 47.619 27.35 0.00 38.92 2.85
4286 5659 1.666700 CAGCTGCTGATGCTTCTTCTC 59.333 52.381 24.88 0.00 38.92 2.87
4287 5660 1.555992 AGCTGCTGATGCTTCTTCTCT 59.444 47.619 0.00 0.00 37.52 3.10
4288 5661 1.935199 GCTGCTGATGCTTCTTCTCTC 59.065 52.381 0.88 0.00 40.48 3.20
4289 5662 2.419021 GCTGCTGATGCTTCTTCTCTCT 60.419 50.000 0.88 0.00 40.48 3.10
4290 5663 3.864243 CTGCTGATGCTTCTTCTCTCTT 58.136 45.455 0.88 0.00 40.48 2.85
4291 5664 3.859443 TGCTGATGCTTCTTCTCTCTTC 58.141 45.455 0.88 0.00 40.48 2.87
4292 5665 3.514706 TGCTGATGCTTCTTCTCTCTTCT 59.485 43.478 0.88 0.00 40.48 2.85
4293 5666 4.020396 TGCTGATGCTTCTTCTCTCTTCTT 60.020 41.667 0.88 0.00 40.48 2.52
4294 5667 4.567959 GCTGATGCTTCTTCTCTCTTCTTC 59.432 45.833 0.88 0.00 36.03 2.87
4295 5668 4.742417 TGATGCTTCTTCTCTCTTCTTCG 58.258 43.478 0.88 0.00 0.00 3.79
4296 5669 2.953020 TGCTTCTTCTCTCTTCTTCGC 58.047 47.619 0.00 0.00 0.00 4.70
4297 5670 2.267426 GCTTCTTCTCTCTTCTTCGCC 58.733 52.381 0.00 0.00 0.00 5.54
4298 5671 2.887337 CTTCTTCTCTCTTCTTCGCCC 58.113 52.381 0.00 0.00 0.00 6.13
4299 5672 1.187087 TCTTCTCTCTTCTTCGCCCC 58.813 55.000 0.00 0.00 0.00 5.80
4300 5673 0.176910 CTTCTCTCTTCTTCGCCCCC 59.823 60.000 0.00 0.00 0.00 5.40
4301 5674 0.544357 TTCTCTCTTCTTCGCCCCCA 60.544 55.000 0.00 0.00 0.00 4.96
4302 5675 1.219393 CTCTCTTCTTCGCCCCCAC 59.781 63.158 0.00 0.00 0.00 4.61
4303 5676 2.245438 CTCTCTTCTTCGCCCCCACC 62.245 65.000 0.00 0.00 0.00 4.61
4304 5677 3.665675 CTCTTCTTCGCCCCCACCG 62.666 68.421 0.00 0.00 0.00 4.94
4305 5678 4.016706 CTTCTTCGCCCCCACCGT 62.017 66.667 0.00 0.00 0.00 4.83
4306 5679 3.546714 CTTCTTCGCCCCCACCGTT 62.547 63.158 0.00 0.00 0.00 4.44
4307 5680 3.122727 TTCTTCGCCCCCACCGTTT 62.123 57.895 0.00 0.00 0.00 3.60
4308 5681 2.596338 CTTCGCCCCCACCGTTTT 60.596 61.111 0.00 0.00 0.00 2.43
4309 5682 2.907917 TTCGCCCCCACCGTTTTG 60.908 61.111 0.00 0.00 0.00 2.44
4310 5683 3.717924 TTCGCCCCCACCGTTTTGT 62.718 57.895 0.00 0.00 0.00 2.83
4311 5684 3.972276 CGCCCCCACCGTTTTGTG 61.972 66.667 0.00 0.00 35.98 3.33
4312 5685 2.519780 GCCCCCACCGTTTTGTGA 60.520 61.111 0.00 0.00 38.55 3.58
4313 5686 1.906333 GCCCCCACCGTTTTGTGAT 60.906 57.895 0.00 0.00 38.55 3.06
4314 5687 1.963679 CCCCCACCGTTTTGTGATG 59.036 57.895 0.00 0.00 38.55 3.07
4315 5688 0.825840 CCCCCACCGTTTTGTGATGT 60.826 55.000 0.00 0.00 38.55 3.06
4316 5689 1.036707 CCCCACCGTTTTGTGATGTT 58.963 50.000 0.00 0.00 38.55 2.71
4317 5690 1.269517 CCCCACCGTTTTGTGATGTTG 60.270 52.381 0.00 0.00 38.55 3.33
4318 5691 1.269517 CCCACCGTTTTGTGATGTTGG 60.270 52.381 0.00 0.00 38.55 3.77
4319 5692 1.407258 CCACCGTTTTGTGATGTTGGT 59.593 47.619 0.00 0.00 38.55 3.67
4320 5693 2.159170 CCACCGTTTTGTGATGTTGGTT 60.159 45.455 0.00 0.00 38.55 3.67
4321 5694 3.066900 CCACCGTTTTGTGATGTTGGTTA 59.933 43.478 0.00 0.00 38.55 2.85
4322 5695 4.440250 CCACCGTTTTGTGATGTTGGTTAA 60.440 41.667 0.00 0.00 38.55 2.01
4323 5696 4.737765 CACCGTTTTGTGATGTTGGTTAAG 59.262 41.667 0.00 0.00 38.55 1.85
4324 5697 4.399934 ACCGTTTTGTGATGTTGGTTAAGT 59.600 37.500 0.00 0.00 0.00 2.24
4325 5698 5.105675 ACCGTTTTGTGATGTTGGTTAAGTT 60.106 36.000 0.00 0.00 0.00 2.66
4326 5699 5.808030 CCGTTTTGTGATGTTGGTTAAGTTT 59.192 36.000 0.00 0.00 0.00 2.66
4327 5700 6.311690 CCGTTTTGTGATGTTGGTTAAGTTTT 59.688 34.615 0.00 0.00 0.00 2.43
4328 5701 7.148557 CCGTTTTGTGATGTTGGTTAAGTTTTT 60.149 33.333 0.00 0.00 0.00 1.94
4329 5702 7.686120 CGTTTTGTGATGTTGGTTAAGTTTTTG 59.314 33.333 0.00 0.00 0.00 2.44
4330 5703 8.499967 GTTTTGTGATGTTGGTTAAGTTTTTGT 58.500 29.630 0.00 0.00 0.00 2.83
4331 5704 8.608844 TTTGTGATGTTGGTTAAGTTTTTGTT 57.391 26.923 0.00 0.00 0.00 2.83
4332 5705 8.608844 TTGTGATGTTGGTTAAGTTTTTGTTT 57.391 26.923 0.00 0.00 0.00 2.83
4333 5706 9.706691 TTGTGATGTTGGTTAAGTTTTTGTTTA 57.293 25.926 0.00 0.00 0.00 2.01
4334 5707 9.877178 TGTGATGTTGGTTAAGTTTTTGTTTAT 57.123 25.926 0.00 0.00 0.00 1.40
4336 5709 9.239002 TGATGTTGGTTAAGTTTTTGTTTATCG 57.761 29.630 0.00 0.00 0.00 2.92
4337 5710 9.453325 GATGTTGGTTAAGTTTTTGTTTATCGA 57.547 29.630 0.00 0.00 0.00 3.59
4338 5711 8.617761 TGTTGGTTAAGTTTTTGTTTATCGAC 57.382 30.769 0.00 0.00 0.00 4.20
4339 5712 7.701501 TGTTGGTTAAGTTTTTGTTTATCGACC 59.298 33.333 0.00 0.00 0.00 4.79
4340 5713 7.330900 TGGTTAAGTTTTTGTTTATCGACCA 57.669 32.000 0.00 0.00 0.00 4.02
4341 5714 7.769220 TGGTTAAGTTTTTGTTTATCGACCAA 58.231 30.769 0.00 0.00 30.10 3.67
4342 5715 7.701501 TGGTTAAGTTTTTGTTTATCGACCAAC 59.298 33.333 0.00 0.00 30.10 3.77
4343 5716 7.096925 GGTTAAGTTTTTGTTTATCGACCAACG 60.097 37.037 0.00 0.00 44.09 4.10
4344 5717 5.488645 AGTTTTTGTTTATCGACCAACGT 57.511 34.783 0.00 0.00 43.13 3.99
4345 5718 5.882553 AGTTTTTGTTTATCGACCAACGTT 58.117 33.333 0.00 0.00 43.13 3.99
4346 5719 5.740099 AGTTTTTGTTTATCGACCAACGTTG 59.260 36.000 21.47 21.47 43.13 4.10
4355 5728 2.833227 CCAACGTTGGGGTCTCCA 59.167 61.111 35.10 0.00 44.70 3.86
4356 5729 1.378762 CCAACGTTGGGGTCTCCAT 59.621 57.895 35.10 0.00 46.52 3.41
4357 5730 0.676782 CCAACGTTGGGGTCTCCATC 60.677 60.000 35.10 0.00 46.52 3.51
4358 5731 0.036164 CAACGTTGGGGTCTCCATCA 59.964 55.000 20.71 0.00 46.52 3.07
4359 5732 0.991920 AACGTTGGGGTCTCCATCAT 59.008 50.000 0.00 0.00 46.52 2.45
4360 5733 0.253044 ACGTTGGGGTCTCCATCATG 59.747 55.000 0.00 0.00 46.52 3.07
4361 5734 0.464373 CGTTGGGGTCTCCATCATGG 60.464 60.000 0.00 0.00 46.52 3.66
4362 5735 0.625849 GTTGGGGTCTCCATCATGGT 59.374 55.000 2.79 0.00 46.52 3.55
4363 5736 0.625316 TTGGGGTCTCCATCATGGTG 59.375 55.000 2.79 0.55 46.52 4.17
4364 5737 0.549902 TGGGGTCTCCATCATGGTGT 60.550 55.000 2.79 0.00 41.46 4.16
4365 5738 0.107017 GGGGTCTCCATCATGGTGTG 60.107 60.000 2.79 0.00 39.03 3.82
4366 5739 0.107017 GGGTCTCCATCATGGTGTGG 60.107 60.000 2.79 5.84 39.03 4.17
4367 5740 0.911769 GGTCTCCATCATGGTGTGGA 59.088 55.000 2.79 9.77 42.03 4.02
4370 5743 2.385777 TCCATCATGGTGTGGAGCA 58.614 52.632 2.79 0.00 39.51 4.26
4371 5744 0.253894 TCCATCATGGTGTGGAGCAG 59.746 55.000 2.79 0.00 39.51 4.24
4372 5745 0.750546 CCATCATGGTGTGGAGCAGG 60.751 60.000 5.00 0.00 37.72 4.85
4373 5746 1.077212 ATCATGGTGTGGAGCAGGC 60.077 57.895 0.00 0.00 31.44 4.85
4374 5747 2.563013 ATCATGGTGTGGAGCAGGCC 62.563 60.000 0.00 0.00 31.44 5.19
4375 5748 4.415150 ATGGTGTGGAGCAGGCCG 62.415 66.667 0.00 0.00 31.77 6.13
4377 5750 3.702048 GGTGTGGAGCAGGCCGTA 61.702 66.667 0.00 0.00 0.00 4.02
4378 5751 2.584608 GTGTGGAGCAGGCCGTAT 59.415 61.111 0.00 0.00 0.00 3.06
4379 5752 1.521681 GTGTGGAGCAGGCCGTATC 60.522 63.158 0.00 0.00 0.00 2.24
4380 5753 2.109181 GTGGAGCAGGCCGTATCC 59.891 66.667 14.29 14.29 0.00 2.59
4381 5754 2.041922 TGGAGCAGGCCGTATCCT 60.042 61.111 19.76 4.43 36.78 3.24
4382 5755 2.134287 TGGAGCAGGCCGTATCCTC 61.134 63.158 19.76 11.87 33.25 3.71
4383 5756 1.834822 GGAGCAGGCCGTATCCTCT 60.835 63.158 13.99 0.00 33.25 3.69
4384 5757 1.663173 GAGCAGGCCGTATCCTCTC 59.337 63.158 0.00 0.00 33.25 3.20
4385 5758 1.811645 GAGCAGGCCGTATCCTCTCC 61.812 65.000 0.00 0.00 33.25 3.71
4386 5759 2.873525 GCAGGCCGTATCCTCTCCC 61.874 68.421 0.00 0.00 33.25 4.30
4387 5760 1.457643 CAGGCCGTATCCTCTCCCA 60.458 63.158 0.00 0.00 33.25 4.37
4388 5761 0.833834 CAGGCCGTATCCTCTCCCAT 60.834 60.000 0.00 0.00 33.25 4.00
4389 5762 0.543174 AGGCCGTATCCTCTCCCATC 60.543 60.000 0.00 0.00 0.00 3.51
4390 5763 1.545706 GGCCGTATCCTCTCCCATCC 61.546 65.000 0.00 0.00 0.00 3.51
4391 5764 1.545706 GCCGTATCCTCTCCCATCCC 61.546 65.000 0.00 0.00 0.00 3.85
4392 5765 0.115349 CCGTATCCTCTCCCATCCCT 59.885 60.000 0.00 0.00 0.00 4.20
4393 5766 1.551452 CGTATCCTCTCCCATCCCTC 58.449 60.000 0.00 0.00 0.00 4.30
4394 5767 1.076350 CGTATCCTCTCCCATCCCTCT 59.924 57.143 0.00 0.00 0.00 3.69
4395 5768 2.815158 GTATCCTCTCCCATCCCTCTC 58.185 57.143 0.00 0.00 0.00 3.20
4396 5769 1.556499 ATCCTCTCCCATCCCTCTCT 58.444 55.000 0.00 0.00 0.00 3.10
4397 5770 0.560193 TCCTCTCCCATCCCTCTCTG 59.440 60.000 0.00 0.00 0.00 3.35
4398 5771 1.120795 CCTCTCCCATCCCTCTCTGC 61.121 65.000 0.00 0.00 0.00 4.26
4399 5772 0.105555 CTCTCCCATCCCTCTCTGCT 60.106 60.000 0.00 0.00 0.00 4.24
4400 5773 0.398239 TCTCCCATCCCTCTCTGCTG 60.398 60.000 0.00 0.00 0.00 4.41
4401 5774 1.383664 TCCCATCCCTCTCTGCTGG 60.384 63.158 0.00 0.00 0.00 4.85
4402 5775 2.450320 CCCATCCCTCTCTGCTGGG 61.450 68.421 0.00 0.00 44.66 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.555992 CCGTGGGGTTATCCAGTTACA 59.444 52.381 0.00 0.00 37.50 2.41
146 158 3.054065 GGATTTGGTGTGAGGGAGAAGAT 60.054 47.826 0.00 0.00 0.00 2.40
227 243 5.155905 GGAATAGGGGAGAATACCTCAAGA 58.844 45.833 0.00 0.00 43.76 3.02
387 404 5.351233 TTTTGCCTACATGTTCAACTACG 57.649 39.130 2.30 0.00 0.00 3.51
414 431 5.708230 TGGACAACATATACACAAAAGGGAC 59.292 40.000 0.00 0.00 0.00 4.46
418 435 8.506168 ACCTATGGACAACATATACACAAAAG 57.494 34.615 0.00 0.00 41.07 2.27
1237 1266 3.325870 CAACAGCTTGTCCGTTGATAGA 58.674 45.455 7.87 0.00 42.03 1.98
1362 1391 6.769512 TCTGACTAGTTTTAGCCAAGAATGT 58.230 36.000 0.00 0.00 0.00 2.71
1455 1484 6.379417 AGACTACCTTGGTTAGTACATACCAC 59.621 42.308 16.14 5.95 43.80 4.16
1518 1547 4.534500 TCCCAGTTATTGAGTAGCTCCAAA 59.466 41.667 0.00 0.00 0.00 3.28
1752 1781 2.119484 AAATCAGGCCGTCCAACCGA 62.119 55.000 0.00 0.00 33.74 4.69
1766 1795 3.564133 CCATGAGGGGGTTCTTGAAATCA 60.564 47.826 0.00 0.00 0.00 2.57
2500 2530 1.186200 CTCCGACCACTCCTCATGAA 58.814 55.000 0.00 0.00 0.00 2.57
2564 2594 1.000607 GTGTCTCTCACAGCCGTGTTA 60.001 52.381 0.00 0.00 45.51 2.41
2655 2685 6.146601 TGAAAGAAGACAACATGATGCAAA 57.853 33.333 0.00 0.00 0.00 3.68
2980 3011 0.177141 TTTATTAGCTCTGGCGGCGT 59.823 50.000 9.37 0.00 44.37 5.68
3454 3534 7.556275 AGTTCATTGAAAAGAGACTACACCAAA 59.444 33.333 0.00 0.00 0.00 3.28
3468 3548 7.087639 AGAAACGACAACAAGTTCATTGAAAA 58.912 30.769 0.00 0.00 41.83 2.29
3473 3553 6.033966 GGAAAGAAACGACAACAAGTTCATT 58.966 36.000 0.00 0.00 0.00 2.57
3626 3706 8.417273 TCATGGCAATCAATGAATTCATAGAT 57.583 30.769 21.00 3.28 35.10 1.98
3751 3866 0.250295 CAGACGCCAAGGAACCTGAA 60.250 55.000 0.00 0.00 0.00 3.02
3835 3992 1.987855 CCAGACGCCAAGGACCCTA 60.988 63.158 0.00 0.00 0.00 3.53
4067 5440 1.003839 GTGACGCCAACATCCCTGA 60.004 57.895 0.00 0.00 0.00 3.86
4178 5551 1.109920 AGATCGACCATCCCAGACGG 61.110 60.000 0.00 0.00 30.71 4.79
4179 5552 0.312416 GAGATCGACCATCCCAGACG 59.688 60.000 0.00 0.00 30.71 4.18
4180 5553 0.676736 GGAGATCGACCATCCCAGAC 59.323 60.000 7.03 0.00 30.71 3.51
4181 5554 0.823769 CGGAGATCGACCATCCCAGA 60.824 60.000 11.37 0.00 42.43 3.86
4182 5555 0.823769 TCGGAGATCGACCATCCCAG 60.824 60.000 11.37 0.00 43.74 4.45
4183 5556 1.229076 TCGGAGATCGACCATCCCA 59.771 57.895 11.37 0.00 43.74 4.37
4184 5557 4.175988 TCGGAGATCGACCATCCC 57.824 61.111 11.37 0.00 43.74 3.85
4191 5564 2.939756 CAGAAGAAGAGTCGGAGATCGA 59.060 50.000 0.00 0.00 46.77 3.59
4192 5565 2.540769 GCAGAAGAAGAGTCGGAGATCG 60.541 54.545 0.00 0.00 40.67 3.69
4193 5566 2.687935 AGCAGAAGAAGAGTCGGAGATC 59.312 50.000 0.00 0.00 40.67 2.75
4194 5567 2.426738 CAGCAGAAGAAGAGTCGGAGAT 59.573 50.000 0.00 0.00 40.67 2.75
4195 5568 1.815613 CAGCAGAAGAAGAGTCGGAGA 59.184 52.381 0.00 0.00 0.00 3.71
4196 5569 1.135141 CCAGCAGAAGAAGAGTCGGAG 60.135 57.143 0.00 0.00 0.00 4.63
4197 5570 0.891373 CCAGCAGAAGAAGAGTCGGA 59.109 55.000 0.00 0.00 0.00 4.55
4198 5571 0.605589 ACCAGCAGAAGAAGAGTCGG 59.394 55.000 0.00 0.00 0.00 4.79
4199 5572 1.671261 CCACCAGCAGAAGAAGAGTCG 60.671 57.143 0.00 0.00 0.00 4.18
4200 5573 1.338579 CCCACCAGCAGAAGAAGAGTC 60.339 57.143 0.00 0.00 0.00 3.36
4201 5574 0.689623 CCCACCAGCAGAAGAAGAGT 59.310 55.000 0.00 0.00 0.00 3.24
4202 5575 0.979665 TCCCACCAGCAGAAGAAGAG 59.020 55.000 0.00 0.00 0.00 2.85
4203 5576 0.979665 CTCCCACCAGCAGAAGAAGA 59.020 55.000 0.00 0.00 0.00 2.87
4204 5577 0.676151 GCTCCCACCAGCAGAAGAAG 60.676 60.000 0.00 0.00 39.43 2.85
4205 5578 1.130054 AGCTCCCACCAGCAGAAGAA 61.130 55.000 0.00 0.00 42.40 2.52
4206 5579 1.537397 AGCTCCCACCAGCAGAAGA 60.537 57.895 0.00 0.00 42.40 2.87
4207 5580 1.376942 CAGCTCCCACCAGCAGAAG 60.377 63.158 0.00 0.00 42.40 2.85
4208 5581 1.834856 CTCAGCTCCCACCAGCAGAA 61.835 60.000 0.00 0.00 42.40 3.02
4209 5582 2.203832 TCAGCTCCCACCAGCAGA 60.204 61.111 0.00 0.00 42.40 4.26
4210 5583 2.121992 AACTCAGCTCCCACCAGCAG 62.122 60.000 0.00 0.00 42.40 4.24
4211 5584 2.149383 AACTCAGCTCCCACCAGCA 61.149 57.895 0.00 0.00 42.40 4.41
4212 5585 1.673665 CAACTCAGCTCCCACCAGC 60.674 63.158 0.00 0.00 39.99 4.85
4213 5586 0.036577 CTCAACTCAGCTCCCACCAG 60.037 60.000 0.00 0.00 0.00 4.00
4214 5587 2.061220 CTCAACTCAGCTCCCACCA 58.939 57.895 0.00 0.00 0.00 4.17
4215 5588 1.376553 GCTCAACTCAGCTCCCACC 60.377 63.158 0.00 0.00 36.38 4.61
4216 5589 1.376553 GGCTCAACTCAGCTCCCAC 60.377 63.158 0.00 0.00 39.58 4.61
4217 5590 1.418097 TTGGCTCAACTCAGCTCCCA 61.418 55.000 0.00 0.00 39.58 4.37
4218 5591 0.676151 CTTGGCTCAACTCAGCTCCC 60.676 60.000 0.00 0.00 39.58 4.30
4219 5592 1.304509 GCTTGGCTCAACTCAGCTCC 61.305 60.000 0.00 0.00 39.58 4.70
4220 5593 1.304509 GGCTTGGCTCAACTCAGCTC 61.305 60.000 0.00 0.00 39.58 4.09
4221 5594 1.303155 GGCTTGGCTCAACTCAGCT 60.303 57.895 0.00 0.00 39.58 4.24
4222 5595 1.174712 TTGGCTTGGCTCAACTCAGC 61.175 55.000 0.00 0.00 38.84 4.26
4223 5596 1.321474 TTTGGCTTGGCTCAACTCAG 58.679 50.000 0.00 0.00 0.00 3.35
4224 5597 1.682854 CTTTTGGCTTGGCTCAACTCA 59.317 47.619 0.00 0.00 0.00 3.41
4225 5598 1.000171 CCTTTTGGCTTGGCTCAACTC 60.000 52.381 0.00 0.00 0.00 3.01
4226 5599 1.043022 CCTTTTGGCTTGGCTCAACT 58.957 50.000 0.00 0.00 0.00 3.16
4227 5600 3.593834 CCTTTTGGCTTGGCTCAAC 57.406 52.632 0.00 0.00 0.00 3.18
4249 5622 3.435186 GACAGCCTTTCCAGCCGC 61.435 66.667 0.00 0.00 0.00 6.53
4250 5623 2.032528 TGACAGCCTTTCCAGCCG 59.967 61.111 0.00 0.00 0.00 5.52
4251 5624 2.338785 GCTGACAGCCTTTCCAGCC 61.339 63.158 17.01 0.00 44.39 4.85
4252 5625 3.272031 GCTGACAGCCTTTCCAGC 58.728 61.111 17.01 0.00 44.00 4.85
4253 5626 1.584380 GCAGCTGACAGCCTTTCCAG 61.584 60.000 23.74 6.63 43.77 3.86
4254 5627 1.601759 GCAGCTGACAGCCTTTCCA 60.602 57.895 23.74 0.00 43.77 3.53
4255 5628 1.303155 AGCAGCTGACAGCCTTTCC 60.303 57.895 23.74 7.90 43.77 3.13
4256 5629 0.604780 TCAGCAGCTGACAGCCTTTC 60.605 55.000 21.85 10.31 43.77 2.62
4257 5630 0.037877 ATCAGCAGCTGACAGCCTTT 59.962 50.000 27.73 6.94 43.63 3.11
4258 5631 0.677098 CATCAGCAGCTGACAGCCTT 60.677 55.000 27.73 7.74 43.63 4.35
4259 5632 1.078356 CATCAGCAGCTGACAGCCT 60.078 57.895 27.73 11.92 43.63 4.58
4260 5633 2.762234 GCATCAGCAGCTGACAGCC 61.762 63.158 29.10 17.28 43.63 4.85
4261 5634 1.306642 AAGCATCAGCAGCTGACAGC 61.307 55.000 30.85 30.85 43.63 4.40
4262 5635 0.727970 GAAGCATCAGCAGCTGACAG 59.272 55.000 27.73 22.26 43.63 3.51
4263 5636 0.323957 AGAAGCATCAGCAGCTGACA 59.676 50.000 27.73 6.77 43.63 3.58
4264 5637 1.397692 GAAGAAGCATCAGCAGCTGAC 59.602 52.381 27.73 15.67 43.63 3.51
4265 5638 1.278413 AGAAGAAGCATCAGCAGCTGA 59.722 47.619 27.37 27.37 44.99 4.26
4266 5639 1.666700 GAGAAGAAGCATCAGCAGCTG 59.333 52.381 17.10 17.10 42.53 4.24
4267 5640 1.555992 AGAGAAGAAGCATCAGCAGCT 59.444 47.619 0.00 0.00 45.97 4.24
4268 5641 1.935199 GAGAGAAGAAGCATCAGCAGC 59.065 52.381 0.00 0.00 45.49 5.25
4269 5642 3.530265 AGAGAGAAGAAGCATCAGCAG 57.470 47.619 0.00 0.00 45.49 4.24
4270 5643 3.514706 AGAAGAGAGAAGAAGCATCAGCA 59.485 43.478 0.00 0.00 45.49 4.41
4271 5644 4.127566 AGAAGAGAGAAGAAGCATCAGC 57.872 45.455 0.00 0.00 42.56 4.26
4272 5645 4.799949 CGAAGAAGAGAGAAGAAGCATCAG 59.200 45.833 0.00 0.00 0.00 2.90
4273 5646 4.742417 CGAAGAAGAGAGAAGAAGCATCA 58.258 43.478 0.00 0.00 0.00 3.07
4274 5647 3.551485 GCGAAGAAGAGAGAAGAAGCATC 59.449 47.826 0.00 0.00 0.00 3.91
4275 5648 3.520569 GCGAAGAAGAGAGAAGAAGCAT 58.479 45.455 0.00 0.00 0.00 3.79
4276 5649 2.353208 GGCGAAGAAGAGAGAAGAAGCA 60.353 50.000 0.00 0.00 0.00 3.91
4277 5650 2.267426 GGCGAAGAAGAGAGAAGAAGC 58.733 52.381 0.00 0.00 0.00 3.86
4278 5651 2.418060 GGGGCGAAGAAGAGAGAAGAAG 60.418 54.545 0.00 0.00 0.00 2.85
4279 5652 1.550976 GGGGCGAAGAAGAGAGAAGAA 59.449 52.381 0.00 0.00 0.00 2.52
4280 5653 1.187087 GGGGCGAAGAAGAGAGAAGA 58.813 55.000 0.00 0.00 0.00 2.87
4281 5654 0.176910 GGGGGCGAAGAAGAGAGAAG 59.823 60.000 0.00 0.00 0.00 2.85
4282 5655 0.544357 TGGGGGCGAAGAAGAGAGAA 60.544 55.000 0.00 0.00 0.00 2.87
4283 5656 1.078528 TGGGGGCGAAGAAGAGAGA 59.921 57.895 0.00 0.00 0.00 3.10
4284 5657 1.219393 GTGGGGGCGAAGAAGAGAG 59.781 63.158 0.00 0.00 0.00 3.20
4285 5658 2.291043 GGTGGGGGCGAAGAAGAGA 61.291 63.158 0.00 0.00 0.00 3.10
4286 5659 2.269241 GGTGGGGGCGAAGAAGAG 59.731 66.667 0.00 0.00 0.00 2.85
4287 5660 3.702048 CGGTGGGGGCGAAGAAGA 61.702 66.667 0.00 0.00 0.00 2.87
4288 5661 3.546714 AACGGTGGGGGCGAAGAAG 62.547 63.158 0.00 0.00 0.00 2.85
4289 5662 2.627839 AAAACGGTGGGGGCGAAGAA 62.628 55.000 0.00 0.00 0.00 2.52
4290 5663 3.122727 AAAACGGTGGGGGCGAAGA 62.123 57.895 0.00 0.00 0.00 2.87
4291 5664 2.596338 AAAACGGTGGGGGCGAAG 60.596 61.111 0.00 0.00 0.00 3.79
4292 5665 2.907917 CAAAACGGTGGGGGCGAA 60.908 61.111 0.00 0.00 0.00 4.70
4293 5666 4.192453 ACAAAACGGTGGGGGCGA 62.192 61.111 0.00 0.00 0.00 5.54
4294 5667 3.972276 CACAAAACGGTGGGGGCG 61.972 66.667 0.00 0.00 35.13 6.13
4295 5668 1.906333 ATCACAAAACGGTGGGGGC 60.906 57.895 0.00 0.00 39.27 5.80
4296 5669 0.825840 ACATCACAAAACGGTGGGGG 60.826 55.000 0.00 0.00 39.27 5.40
4297 5670 1.036707 AACATCACAAAACGGTGGGG 58.963 50.000 0.00 0.00 39.27 4.96
4298 5671 1.269517 CCAACATCACAAAACGGTGGG 60.270 52.381 0.00 0.00 39.27 4.61
4299 5672 1.407258 ACCAACATCACAAAACGGTGG 59.593 47.619 0.00 0.00 39.27 4.61
4300 5673 2.861462 ACCAACATCACAAAACGGTG 57.139 45.000 0.00 0.00 40.16 4.94
4301 5674 4.399934 ACTTAACCAACATCACAAAACGGT 59.600 37.500 0.00 0.00 0.00 4.83
4302 5675 4.927422 ACTTAACCAACATCACAAAACGG 58.073 39.130 0.00 0.00 0.00 4.44
4303 5676 6.879188 AAACTTAACCAACATCACAAAACG 57.121 33.333 0.00 0.00 0.00 3.60
4304 5677 8.499967 ACAAAAACTTAACCAACATCACAAAAC 58.500 29.630 0.00 0.00 0.00 2.43
4305 5678 8.608844 ACAAAAACTTAACCAACATCACAAAA 57.391 26.923 0.00 0.00 0.00 2.44
4306 5679 8.608844 AACAAAAACTTAACCAACATCACAAA 57.391 26.923 0.00 0.00 0.00 2.83
4307 5680 8.608844 AAACAAAAACTTAACCAACATCACAA 57.391 26.923 0.00 0.00 0.00 3.33
4308 5681 9.877178 ATAAACAAAAACTTAACCAACATCACA 57.123 25.926 0.00 0.00 0.00 3.58
4310 5683 9.239002 CGATAAACAAAAACTTAACCAACATCA 57.761 29.630 0.00 0.00 0.00 3.07
4311 5684 9.453325 TCGATAAACAAAAACTTAACCAACATC 57.547 29.630 0.00 0.00 0.00 3.06
4312 5685 9.240159 GTCGATAAACAAAAACTTAACCAACAT 57.760 29.630 0.00 0.00 0.00 2.71
4313 5686 7.701501 GGTCGATAAACAAAAACTTAACCAACA 59.298 33.333 0.00 0.00 0.00 3.33
4314 5687 7.701501 TGGTCGATAAACAAAAACTTAACCAAC 59.298 33.333 0.00 0.00 0.00 3.77
4315 5688 7.769220 TGGTCGATAAACAAAAACTTAACCAA 58.231 30.769 0.00 0.00 0.00 3.67
4316 5689 7.330900 TGGTCGATAAACAAAAACTTAACCA 57.669 32.000 0.00 0.00 0.00 3.67
4317 5690 7.096925 CGTTGGTCGATAAACAAAAACTTAACC 60.097 37.037 12.07 0.00 42.86 2.85
4318 5691 7.429051 ACGTTGGTCGATAAACAAAAACTTAAC 59.571 33.333 12.07 0.00 42.86 2.01
4319 5692 7.470900 ACGTTGGTCGATAAACAAAAACTTAA 58.529 30.769 12.07 0.00 42.86 1.85
4320 5693 7.014092 ACGTTGGTCGATAAACAAAAACTTA 57.986 32.000 12.07 0.00 42.86 2.24
4321 5694 5.882553 ACGTTGGTCGATAAACAAAAACTT 58.117 33.333 12.07 0.00 42.86 2.66
4322 5695 5.488645 ACGTTGGTCGATAAACAAAAACT 57.511 34.783 12.07 0.00 42.86 2.66
4323 5696 5.052238 CCAACGTTGGTCGATAAACAAAAAC 60.052 40.000 34.48 0.00 43.43 2.43
4324 5697 5.035443 CCAACGTTGGTCGATAAACAAAAA 58.965 37.500 34.48 0.00 43.43 1.94
4325 5698 4.599047 CCAACGTTGGTCGATAAACAAAA 58.401 39.130 34.48 0.00 43.43 2.44
4326 5699 4.212213 CCAACGTTGGTCGATAAACAAA 57.788 40.909 34.48 0.00 43.43 2.83
4327 5700 3.881780 CCAACGTTGGTCGATAAACAA 57.118 42.857 34.48 3.19 43.43 2.83
4346 5719 0.107017 CACACCATGATGGAGACCCC 60.107 60.000 20.11 0.00 40.96 4.95
4347 5720 0.107017 CCACACCATGATGGAGACCC 60.107 60.000 20.11 0.00 40.96 4.46
4348 5721 0.911769 TCCACACCATGATGGAGACC 59.088 55.000 20.11 0.00 40.96 3.85
4352 5725 0.253894 CTGCTCCACACCATGATGGA 59.746 55.000 20.11 11.44 40.96 3.41
4353 5726 0.750546 CCTGCTCCACACCATGATGG 60.751 60.000 10.53 10.53 45.02 3.51
4354 5727 1.381928 GCCTGCTCCACACCATGATG 61.382 60.000 0.00 0.00 0.00 3.07
4355 5728 1.077212 GCCTGCTCCACACCATGAT 60.077 57.895 0.00 0.00 0.00 2.45
4356 5729 2.352422 GCCTGCTCCACACCATGA 59.648 61.111 0.00 0.00 0.00 3.07
4357 5730 2.753043 GGCCTGCTCCACACCATG 60.753 66.667 0.00 0.00 0.00 3.66
4358 5731 4.415150 CGGCCTGCTCCACACCAT 62.415 66.667 0.00 0.00 0.00 3.55
4360 5733 2.925162 GATACGGCCTGCTCCACACC 62.925 65.000 0.00 0.00 0.00 4.16
4361 5734 1.521681 GATACGGCCTGCTCCACAC 60.522 63.158 0.00 0.00 0.00 3.82
4362 5735 2.731571 GGATACGGCCTGCTCCACA 61.732 63.158 0.00 0.00 0.00 4.17
4363 5736 2.109181 GGATACGGCCTGCTCCAC 59.891 66.667 0.00 0.00 0.00 4.02
4364 5737 2.041922 AGGATACGGCCTGCTCCA 60.042 61.111 14.57 0.00 46.39 3.86
4365 5738 1.811645 GAGAGGATACGGCCTGCTCC 61.812 65.000 8.18 7.21 46.39 4.70
4366 5739 1.663173 GAGAGGATACGGCCTGCTC 59.337 63.158 0.00 1.94 46.39 4.26
4367 5740 1.834822 GGAGAGGATACGGCCTGCT 60.835 63.158 0.00 0.00 46.39 4.24
4368 5741 2.737830 GGAGAGGATACGGCCTGC 59.262 66.667 0.00 0.00 46.39 4.85
4369 5742 0.833834 ATGGGAGAGGATACGGCCTG 60.834 60.000 0.00 0.00 46.39 4.85
4370 5743 0.543174 GATGGGAGAGGATACGGCCT 60.543 60.000 0.00 0.00 46.39 5.19
4371 5744 1.545706 GGATGGGAGAGGATACGGCC 61.546 65.000 0.00 0.00 46.39 6.13
4372 5745 1.545706 GGGATGGGAGAGGATACGGC 61.546 65.000 0.00 0.00 46.39 5.68
4373 5746 0.115349 AGGGATGGGAGAGGATACGG 59.885 60.000 0.00 0.00 46.39 4.02
4374 5747 1.076350 AGAGGGATGGGAGAGGATACG 59.924 57.143 0.00 0.00 46.39 3.06
4375 5748 2.381961 AGAGAGGGATGGGAGAGGATAC 59.618 54.545 0.00 0.00 0.00 2.24
4376 5749 2.381618 CAGAGAGGGATGGGAGAGGATA 59.618 54.545 0.00 0.00 0.00 2.59
4377 5750 1.149711 CAGAGAGGGATGGGAGAGGAT 59.850 57.143 0.00 0.00 0.00 3.24
4378 5751 0.560193 CAGAGAGGGATGGGAGAGGA 59.440 60.000 0.00 0.00 0.00 3.71
4379 5752 1.120795 GCAGAGAGGGATGGGAGAGG 61.121 65.000 0.00 0.00 0.00 3.69
4380 5753 0.105555 AGCAGAGAGGGATGGGAGAG 60.106 60.000 0.00 0.00 0.00 3.20
4381 5754 0.398239 CAGCAGAGAGGGATGGGAGA 60.398 60.000 0.00 0.00 0.00 3.71
4382 5755 1.409251 CCAGCAGAGAGGGATGGGAG 61.409 65.000 0.00 0.00 38.15 4.30
4383 5756 1.383664 CCAGCAGAGAGGGATGGGA 60.384 63.158 0.00 0.00 38.15 4.37
4384 5757 3.238438 CCAGCAGAGAGGGATGGG 58.762 66.667 0.00 0.00 38.15 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.