Multiple sequence alignment - TraesCS7B01G150300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G150300 | chr7B | 100.000 | 4662 | 0 | 0 | 1 | 4662 | 199490671 | 199495332 | 0.000000e+00 | 8610.0 |
1 | TraesCS7B01G150300 | chr7D | 93.308 | 4229 | 224 | 33 | 1 | 4201 | 228004230 | 228008427 | 0.000000e+00 | 6187.0 |
2 | TraesCS7B01G150300 | chr7D | 91.866 | 418 | 24 | 6 | 4248 | 4662 | 228009954 | 228010364 | 4.050000e-160 | 575.0 |
3 | TraesCS7B01G150300 | chr7D | 80.851 | 282 | 43 | 5 | 649 | 929 | 491793092 | 491792821 | 1.310000e-50 | 211.0 |
4 | TraesCS7B01G150300 | chr7D | 78.378 | 259 | 45 | 11 | 2 | 255 | 161038514 | 161038766 | 1.740000e-34 | 158.0 |
5 | TraesCS7B01G150300 | chr7A | 94.065 | 3791 | 148 | 39 | 903 | 4662 | 240082004 | 240085748 | 0.000000e+00 | 5683.0 |
6 | TraesCS7B01G150300 | chr3B | 83.713 | 614 | 90 | 10 | 2 | 609 | 475381673 | 475382282 | 5.230000e-159 | 571.0 |
7 | TraesCS7B01G150300 | chr3B | 81.564 | 179 | 29 | 4 | 3 | 179 | 825327273 | 825327449 | 1.350000e-30 | 145.0 |
8 | TraesCS7B01G150300 | chr3B | 89.091 | 55 | 5 | 1 | 698 | 751 | 826655243 | 826655189 | 3.010000e-07 | 67.6 |
9 | TraesCS7B01G150300 | chr1B | 83.956 | 455 | 66 | 7 | 160 | 609 | 564914992 | 564915444 | 3.330000e-116 | 429.0 |
10 | TraesCS7B01G150300 | chr4D | 80.460 | 261 | 39 | 11 | 2 | 257 | 358533583 | 358533836 | 6.160000e-44 | 189.0 |
11 | TraesCS7B01G150300 | chr5A | 77.992 | 259 | 48 | 8 | 2 | 257 | 294873282 | 294873030 | 2.250000e-33 | 154.0 |
12 | TraesCS7B01G150300 | chr6B | 77.186 | 263 | 42 | 15 | 1 | 252 | 189212309 | 189212564 | 2.260000e-28 | 137.0 |
13 | TraesCS7B01G150300 | chrUn | 81.212 | 165 | 28 | 3 | 3 | 166 | 41141179 | 41141017 | 3.790000e-26 | 130.0 |
14 | TraesCS7B01G150300 | chrUn | 81.212 | 165 | 28 | 3 | 3 | 166 | 211776850 | 211776688 | 3.790000e-26 | 130.0 |
15 | TraesCS7B01G150300 | chr6A | 75.217 | 230 | 55 | 2 | 698 | 926 | 150910879 | 150910651 | 1.770000e-19 | 108.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G150300 | chr7B | 199490671 | 199495332 | 4661 | False | 8610 | 8610 | 100.000 | 1 | 4662 | 1 | chr7B.!!$F1 | 4661 |
1 | TraesCS7B01G150300 | chr7D | 228004230 | 228010364 | 6134 | False | 3381 | 6187 | 92.587 | 1 | 4662 | 2 | chr7D.!!$F2 | 4661 |
2 | TraesCS7B01G150300 | chr7A | 240082004 | 240085748 | 3744 | False | 5683 | 5683 | 94.065 | 903 | 4662 | 1 | chr7A.!!$F1 | 3759 |
3 | TraesCS7B01G150300 | chr3B | 475381673 | 475382282 | 609 | False | 571 | 571 | 83.713 | 2 | 609 | 1 | chr3B.!!$F1 | 607 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
82 | 83 | 0.105298 | GGGGGTACGGATTAGAGGGT | 60.105 | 60.000 | 0.00 | 0.00 | 0.0 | 4.34 | F |
556 | 561 | 0.317160 | CAGTGCACGGTGTCCTTAGA | 59.683 | 55.000 | 12.01 | 0.00 | 0.0 | 2.10 | F |
864 | 869 | 0.515564 | CGCGTTGGACCGATTTTTCT | 59.484 | 50.000 | 0.00 | 0.00 | 0.0 | 2.52 | F |
1773 | 1805 | 1.079543 | CTGAGACAACCGGCCTCTG | 60.080 | 63.158 | 0.00 | 3.88 | 0.0 | 3.35 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1934 | 1966 | 0.108138 | GGGATCTGTCTCACAACCCG | 60.108 | 60.000 | 0.00 | 0.0 | 30.67 | 5.28 | R |
2480 | 2520 | 1.695242 | ACAACGTCCTGGTAACCATCA | 59.305 | 47.619 | 0.00 | 0.0 | 30.82 | 3.07 | R |
2755 | 2795 | 4.763793 | GCATAGATGTTCCATAATGCTGGT | 59.236 | 41.667 | 12.98 | 0.0 | 37.37 | 4.00 | R |
3740 | 3782 | 1.169577 | TGCCAACAACGACACAAGTT | 58.830 | 45.000 | 0.00 | 0.0 | 0.00 | 2.66 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 2.925706 | TTAGACGCCTGCCCCACA | 60.926 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
50 | 51 | 1.315690 | CTGTCGCGGGAATAGGTCTA | 58.684 | 55.000 | 6.13 | 0.00 | 0.00 | 2.59 |
82 | 83 | 0.105298 | GGGGGTACGGATTAGAGGGT | 60.105 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
137 | 138 | 4.161001 | GGATTTACGAGTTTAGACCCCTCA | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
139 | 140 | 2.005370 | ACGAGTTTAGACCCCTCACA | 57.995 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
156 | 157 | 2.838202 | TCACAGAGGAGATAACAACCCC | 59.162 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
195 | 196 | 3.929610 | GAGCTTGATTGACTGGAGTGTAC | 59.070 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
238 | 239 | 1.005924 | CTTGTTATGGAGCTGGGGGTT | 59.994 | 52.381 | 0.00 | 0.00 | 0.00 | 4.11 |
257 | 258 | 4.492611 | GGTTGCTTATATAGAGTACGCCC | 58.507 | 47.826 | 0.00 | 0.00 | 0.00 | 6.13 |
259 | 260 | 3.415212 | TGCTTATATAGAGTACGCCCGT | 58.585 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
294 | 296 | 5.489637 | TGCTCCCATAACTAAGGGTTAAAGA | 59.510 | 40.000 | 0.00 | 0.00 | 45.64 | 2.52 |
308 | 310 | 4.020839 | GGGTTAAAGAGGGGTTTTAAAGGC | 60.021 | 45.833 | 0.00 | 0.00 | 33.28 | 4.35 |
309 | 311 | 4.589798 | GGTTAAAGAGGGGTTTTAAAGGCA | 59.410 | 41.667 | 0.00 | 0.00 | 33.28 | 4.75 |
313 | 315 | 3.648739 | AGAGGGGTTTTAAAGGCAACAA | 58.351 | 40.909 | 0.00 | 0.00 | 41.41 | 2.83 |
411 | 413 | 2.873094 | TGGTCTTCTCTGTCCGAGTA | 57.127 | 50.000 | 0.00 | 0.00 | 40.75 | 2.59 |
461 | 464 | 3.449377 | TGGTCGATGGATTGCTTGTACTA | 59.551 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
472 | 475 | 4.617253 | TGCTTGTACTATGAGTGGTTGT | 57.383 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
523 | 526 | 3.926058 | ATTATGAACGGTAACCTGGCT | 57.074 | 42.857 | 0.00 | 0.00 | 0.00 | 4.75 |
530 | 533 | 2.125106 | GTAACCTGGCTCTGGGCG | 60.125 | 66.667 | 0.00 | 0.00 | 42.94 | 6.13 |
554 | 559 | 1.301401 | GCAGTGCACGGTGTCCTTA | 60.301 | 57.895 | 18.34 | 0.00 | 0.00 | 2.69 |
556 | 561 | 0.317160 | CAGTGCACGGTGTCCTTAGA | 59.683 | 55.000 | 12.01 | 0.00 | 0.00 | 2.10 |
589 | 594 | 2.457598 | GTCAGACCAGTGACCCTATCA | 58.542 | 52.381 | 0.00 | 0.00 | 40.96 | 2.15 |
592 | 597 | 2.035193 | CAGACCAGTGACCCTATCATCG | 59.965 | 54.545 | 0.00 | 0.00 | 40.28 | 3.84 |
612 | 617 | 4.395625 | TCGGTATATGTCCTCGTCAAGAT | 58.604 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
620 | 625 | 4.847516 | TCGTCAAGATCGGCGGCG | 62.848 | 66.667 | 27.15 | 27.15 | 0.00 | 6.46 |
636 | 641 | 3.864686 | CGGCATCAAGGTTCGGCG | 61.865 | 66.667 | 0.00 | 0.00 | 41.08 | 6.46 |
637 | 642 | 3.508840 | GGCATCAAGGTTCGGCGG | 61.509 | 66.667 | 7.21 | 0.00 | 0.00 | 6.13 |
675 | 680 | 3.135027 | CGGGAGGGTTTTGGGAAAA | 57.865 | 52.632 | 0.00 | 0.00 | 0.00 | 2.29 |
688 | 693 | 3.843177 | TGGGAAAATGGAGGGAAATGA | 57.157 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
693 | 698 | 4.471025 | GGAAAATGGAGGGAAATGATGGTT | 59.529 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
695 | 700 | 3.763557 | ATGGAGGGAAATGATGGTTGT | 57.236 | 42.857 | 0.00 | 0.00 | 0.00 | 3.32 |
757 | 762 | 3.547313 | GCGCGCGTCCGTTTCATA | 61.547 | 61.111 | 32.35 | 0.00 | 36.67 | 2.15 |
762 | 767 | 1.563173 | GCGTCCGTTTCATATCCGC | 59.437 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
781 | 786 | 1.714794 | CGTCGAGGCAAATGAGACTT | 58.285 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
788 | 793 | 7.412563 | CGTCGAGGCAAATGAGACTTAAATTTA | 60.413 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
790 | 795 | 7.822334 | TCGAGGCAAATGAGACTTAAATTTAGA | 59.178 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
792 | 797 | 8.056407 | AGGCAAATGAGACTTAAATTTAGACC | 57.944 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
795 | 800 | 7.472543 | CAAATGAGACTTAAATTTAGACCGGG | 58.527 | 38.462 | 6.32 | 0.00 | 0.00 | 5.73 |
800 | 805 | 6.120220 | AGACTTAAATTTAGACCGGGAATGG | 58.880 | 40.000 | 6.32 | 0.00 | 0.00 | 3.16 |
809 | 814 | 2.297895 | CCGGGAATGGGTGGACAGA | 61.298 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
816 | 821 | 2.987547 | GGGTGGACAGACGGACGA | 60.988 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
822 | 827 | 0.599204 | GGACAGACGGACGAAAAGCA | 60.599 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
852 | 857 | 1.944676 | GTCTAGATCGGCGCGTTGG | 60.945 | 63.158 | 8.43 | 0.00 | 0.00 | 3.77 |
853 | 858 | 2.116533 | TCTAGATCGGCGCGTTGGA | 61.117 | 57.895 | 8.43 | 2.80 | 0.00 | 3.53 |
855 | 860 | 3.420214 | TAGATCGGCGCGTTGGACC | 62.420 | 63.158 | 8.43 | 0.00 | 0.00 | 4.46 |
860 | 865 | 3.428282 | GGCGCGTTGGACCGATTT | 61.428 | 61.111 | 8.43 | 0.00 | 0.00 | 2.17 |
862 | 867 | 1.081708 | GCGCGTTGGACCGATTTTT | 60.082 | 52.632 | 8.43 | 0.00 | 0.00 | 1.94 |
863 | 868 | 1.063412 | GCGCGTTGGACCGATTTTTC | 61.063 | 55.000 | 8.43 | 0.00 | 0.00 | 2.29 |
864 | 869 | 0.515564 | CGCGTTGGACCGATTTTTCT | 59.484 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
865 | 870 | 1.727880 | CGCGTTGGACCGATTTTTCTA | 59.272 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
869 | 874 | 4.791676 | GCGTTGGACCGATTTTTCTATTTC | 59.208 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
871 | 876 | 5.329493 | GTTGGACCGATTTTTCTATTTCCG | 58.671 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
873 | 878 | 3.242969 | GGACCGATTTTTCTATTTCCGGC | 60.243 | 47.826 | 0.00 | 0.00 | 39.09 | 6.13 |
907 | 929 | 7.956508 | GGATACGTATAGATGAAATGAGTCG | 57.043 | 40.000 | 8.34 | 0.00 | 0.00 | 4.18 |
916 | 938 | 2.777094 | TGAAATGAGTCGGTGCATTGA | 58.223 | 42.857 | 0.00 | 0.00 | 35.11 | 2.57 |
928 | 950 | 3.425359 | CGGTGCATTGAAGTTGCTCTTAG | 60.425 | 47.826 | 0.00 | 0.00 | 40.77 | 2.18 |
940 | 962 | 4.019321 | AGTTGCTCTTAGGCTATCCAAACA | 60.019 | 41.667 | 0.00 | 0.00 | 33.74 | 2.83 |
949 | 971 | 5.649782 | AGGCTATCCAAACAGACAAAATG | 57.350 | 39.130 | 0.00 | 0.00 | 33.74 | 2.32 |
950 | 972 | 4.463891 | AGGCTATCCAAACAGACAAAATGG | 59.536 | 41.667 | 0.00 | 0.00 | 33.74 | 3.16 |
952 | 974 | 4.462483 | GCTATCCAAACAGACAAAATGGGA | 59.538 | 41.667 | 0.00 | 0.00 | 0.00 | 4.37 |
954 | 976 | 6.351286 | GCTATCCAAACAGACAAAATGGGAAT | 60.351 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
959 | 981 | 8.435982 | TCCAAACAGACAAAATGGGAATAAAAT | 58.564 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
961 | 983 | 8.434661 | CAAACAGACAAAATGGGAATAAAATCG | 58.565 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
962 | 984 | 6.099341 | ACAGACAAAATGGGAATAAAATCGC | 58.901 | 36.000 | 0.00 | 0.00 | 0.00 | 4.58 |
973 | 995 | 5.463061 | GGGAATAAAATCGCATGTCCATTTG | 59.537 | 40.000 | 0.00 | 0.00 | 32.88 | 2.32 |
1159 | 1188 | 3.007182 | TCCACGAATTAACGAGTTTCCCT | 59.993 | 43.478 | 0.00 | 0.00 | 37.03 | 4.20 |
1215 | 1244 | 2.892425 | CCATCGACCGAAGCCAGC | 60.892 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
1251 | 1280 | 2.835431 | CCGAGCGGAGGGATGACT | 60.835 | 66.667 | 2.00 | 0.00 | 37.50 | 3.41 |
1433 | 1462 | 2.156098 | CTCCGGTGAGTAGCCTATCTC | 58.844 | 57.143 | 0.00 | 0.00 | 33.70 | 2.75 |
1480 | 1509 | 2.123854 | CGGATCGGTCAGGGAGGA | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
1488 | 1517 | 1.338200 | CGGTCAGGGAGGAAGTTTCTG | 60.338 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
1495 | 1524 | 1.478654 | GGAGGAAGTTTCTGTGGGCAA | 60.479 | 52.381 | 0.00 | 0.00 | 0.00 | 4.52 |
1505 | 1534 | 1.133513 | TCTGTGGGCAACTTGGTTGAT | 60.134 | 47.619 | 13.63 | 0.00 | 45.28 | 2.57 |
1567 | 1596 | 2.356069 | CACTCGATCGATCAACTGGAGA | 59.644 | 50.000 | 24.89 | 13.13 | 0.00 | 3.71 |
1569 | 1598 | 2.616376 | CTCGATCGATCAACTGGAGAGT | 59.384 | 50.000 | 24.40 | 0.00 | 0.00 | 3.24 |
1582 | 1611 | 8.589701 | TCAACTGGAGAGTAATGTAGAATGTA | 57.410 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
1598 | 1627 | 4.517453 | AGAATGTATGCTCTACGGAGTCTC | 59.483 | 45.833 | 0.00 | 0.00 | 43.93 | 3.36 |
1628 | 1657 | 3.190079 | TGTAGAATGACTCGAATGCTGC | 58.810 | 45.455 | 0.00 | 0.00 | 0.00 | 5.25 |
1718 | 1747 | 7.566858 | GGTAACAATACAATCAAAGCAACTG | 57.433 | 36.000 | 0.00 | 0.00 | 33.45 | 3.16 |
1739 | 1768 | 6.051717 | ACTGGTGATGTAGCAAGTCAATATC | 58.948 | 40.000 | 0.00 | 0.00 | 36.15 | 1.63 |
1744 | 1773 | 7.096023 | GGTGATGTAGCAAGTCAATATCTTACG | 60.096 | 40.741 | 0.00 | 0.00 | 0.00 | 3.18 |
1745 | 1774 | 7.435488 | GTGATGTAGCAAGTCAATATCTTACGT | 59.565 | 37.037 | 0.00 | 0.00 | 0.00 | 3.57 |
1746 | 1775 | 7.979537 | TGATGTAGCAAGTCAATATCTTACGTT | 59.020 | 33.333 | 0.00 | 0.00 | 0.00 | 3.99 |
1773 | 1805 | 1.079543 | CTGAGACAACCGGCCTCTG | 60.080 | 63.158 | 0.00 | 3.88 | 0.00 | 3.35 |
1774 | 1806 | 1.821061 | CTGAGACAACCGGCCTCTGT | 61.821 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1786 | 1818 | 3.644606 | CTCTGTGCCCTGTGCCCT | 61.645 | 66.667 | 0.00 | 0.00 | 40.16 | 5.19 |
1787 | 1819 | 3.914579 | CTCTGTGCCCTGTGCCCTG | 62.915 | 68.421 | 0.00 | 0.00 | 40.16 | 4.45 |
1977 | 2009 | 1.767692 | GACTCCCTTCCCCAAAGCA | 59.232 | 57.895 | 0.00 | 0.00 | 33.29 | 3.91 |
2052 | 2091 | 9.342308 | ACTACTGGTGATATGGAAATTTATGTG | 57.658 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
2169 | 2208 | 6.425721 | CGTCTTGGGTTCATGAAAACTTACTA | 59.574 | 38.462 | 10.35 | 0.00 | 0.00 | 1.82 |
2222 | 2261 | 8.443937 | GTTACACAGTCCATTCTCATCTTTTAC | 58.556 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
2315 | 2354 | 6.716628 | ACTGGTTGTATTGTTGATTGAGATGT | 59.283 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
2316 | 2355 | 7.231317 | ACTGGTTGTATTGTTGATTGAGATGTT | 59.769 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2399 | 2439 | 4.911610 | GCAGTTGTTATATTATTGCCAGCG | 59.088 | 41.667 | 0.00 | 0.00 | 0.00 | 5.18 |
2411 | 2451 | 4.519540 | ATTGCCAGCGTGTTTATTCTTT | 57.480 | 36.364 | 0.00 | 0.00 | 0.00 | 2.52 |
2737 | 2777 | 7.148540 | GCTGTTATTGACAAAGGTATCGTTACA | 60.149 | 37.037 | 6.02 | 0.00 | 37.93 | 2.41 |
3296 | 3338 | 4.684724 | ACAATGTCCTACTCTTGACCCTA | 58.315 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
3554 | 3596 | 5.525378 | GTCATAATCATCCGAACTTGCTTCT | 59.475 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3557 | 3599 | 3.401033 | TCATCCGAACTTGCTTCTTGA | 57.599 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
3628 | 3670 | 0.032678 | ACGACAGTGCAAGAGTGGAG | 59.967 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3636 | 3678 | 1.490490 | TGCAAGAGTGGAGTTGAAGGT | 59.510 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
3641 | 3683 | 1.887198 | GAGTGGAGTTGAAGGTCGAGA | 59.113 | 52.381 | 0.00 | 0.00 | 0.00 | 4.04 |
3669 | 3711 | 4.034394 | TGAAGCAGACAAATGATCGCATAC | 59.966 | 41.667 | 0.00 | 0.00 | 33.44 | 2.39 |
3804 | 3847 | 4.521146 | AGGATGTTGCTTCTTCGATCATT | 58.479 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
3823 | 3866 | 9.188588 | CGATCATTGAATTTGGAATAGAAATGG | 57.811 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3829 | 3872 | 8.592529 | TGAATTTGGAATAGAAATGGATGTGA | 57.407 | 30.769 | 0.00 | 0.00 | 0.00 | 3.58 |
3837 | 3880 | 7.922811 | GGAATAGAAATGGATGTGATGTTTTCC | 59.077 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
3980 | 4023 | 1.835531 | GGGACGGGAAAGTATCTTGGA | 59.164 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
3983 | 4027 | 4.524053 | GGACGGGAAAGTATCTTGGAAAT | 58.476 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
4135 | 4182 | 9.803315 | GAGAAACTTGAACTTTTTAGGATTGTT | 57.197 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
4171 | 4218 | 2.592102 | ACATTCACAATGCTCCCTGT | 57.408 | 45.000 | 0.00 | 0.00 | 42.69 | 4.00 |
4172 | 4219 | 2.880443 | ACATTCACAATGCTCCCTGTT | 58.120 | 42.857 | 0.00 | 0.00 | 42.69 | 3.16 |
4173 | 4220 | 3.233507 | ACATTCACAATGCTCCCTGTTT | 58.766 | 40.909 | 0.00 | 0.00 | 42.69 | 2.83 |
4174 | 4221 | 3.642848 | ACATTCACAATGCTCCCTGTTTT | 59.357 | 39.130 | 0.00 | 0.00 | 42.69 | 2.43 |
4175 | 4222 | 4.101430 | ACATTCACAATGCTCCCTGTTTTT | 59.899 | 37.500 | 0.00 | 0.00 | 42.69 | 1.94 |
4203 | 4250 | 6.676237 | TTTTTGAAACTTCTGAATTTGGCC | 57.324 | 33.333 | 0.00 | 0.00 | 0.00 | 5.36 |
4204 | 4251 | 5.350504 | TTTGAAACTTCTGAATTTGGCCA | 57.649 | 34.783 | 0.00 | 0.00 | 0.00 | 5.36 |
4207 | 4254 | 5.927819 | TGAAACTTCTGAATTTGGCCATTT | 58.072 | 33.333 | 6.09 | 3.13 | 0.00 | 2.32 |
4209 | 4256 | 7.504403 | TGAAACTTCTGAATTTGGCCATTTTA | 58.496 | 30.769 | 6.09 | 0.00 | 0.00 | 1.52 |
4210 | 4257 | 7.656948 | TGAAACTTCTGAATTTGGCCATTTTAG | 59.343 | 33.333 | 6.09 | 10.23 | 0.00 | 1.85 |
4211 | 4258 | 6.041423 | ACTTCTGAATTTGGCCATTTTAGG | 57.959 | 37.500 | 6.09 | 1.36 | 0.00 | 2.69 |
4212 | 4259 | 5.779771 | ACTTCTGAATTTGGCCATTTTAGGA | 59.220 | 36.000 | 6.09 | 3.87 | 0.00 | 2.94 |
4213 | 4260 | 6.269769 | ACTTCTGAATTTGGCCATTTTAGGAA | 59.730 | 34.615 | 6.09 | 7.34 | 0.00 | 3.36 |
4214 | 4261 | 6.872585 | TCTGAATTTGGCCATTTTAGGAAT | 57.127 | 33.333 | 6.09 | 0.00 | 0.00 | 3.01 |
4215 | 4262 | 7.256494 | TCTGAATTTGGCCATTTTAGGAATT | 57.744 | 32.000 | 6.09 | 7.74 | 0.00 | 2.17 |
4216 | 4263 | 7.104939 | TCTGAATTTGGCCATTTTAGGAATTG | 58.895 | 34.615 | 6.09 | 0.00 | 0.00 | 2.32 |
4217 | 4264 | 6.777782 | TGAATTTGGCCATTTTAGGAATTGT | 58.222 | 32.000 | 6.09 | 0.00 | 0.00 | 2.71 |
4218 | 4265 | 7.230027 | TGAATTTGGCCATTTTAGGAATTGTT | 58.770 | 30.769 | 6.09 | 0.00 | 0.00 | 2.83 |
4219 | 4266 | 7.174599 | TGAATTTGGCCATTTTAGGAATTGTTG | 59.825 | 33.333 | 6.09 | 0.00 | 0.00 | 3.33 |
4220 | 4267 | 5.815233 | TTGGCCATTTTAGGAATTGTTGA | 57.185 | 34.783 | 6.09 | 0.00 | 0.00 | 3.18 |
4221 | 4268 | 5.146010 | TGGCCATTTTAGGAATTGTTGAC | 57.854 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
4222 | 4269 | 4.590647 | TGGCCATTTTAGGAATTGTTGACA | 59.409 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
4223 | 4270 | 4.929211 | GGCCATTTTAGGAATTGTTGACAC | 59.071 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
4224 | 4271 | 5.510520 | GGCCATTTTAGGAATTGTTGACACA | 60.511 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
4225 | 4272 | 6.165577 | GCCATTTTAGGAATTGTTGACACAT | 58.834 | 36.000 | 0.00 | 0.00 | 31.06 | 3.21 |
4226 | 4273 | 7.319646 | GCCATTTTAGGAATTGTTGACACATA | 58.680 | 34.615 | 0.00 | 0.00 | 31.06 | 2.29 |
4227 | 4274 | 7.981225 | GCCATTTTAGGAATTGTTGACACATAT | 59.019 | 33.333 | 0.00 | 0.00 | 31.06 | 1.78 |
4244 | 4291 | 4.456911 | CACATATGTTGGGAGCATGGTATC | 59.543 | 45.833 | 5.37 | 0.00 | 0.00 | 2.24 |
4285 | 5830 | 1.490910 | GGATACTTTCCACTCCTGGGG | 59.509 | 57.143 | 0.00 | 0.00 | 44.74 | 4.96 |
4286 | 5831 | 0.919710 | ATACTTTCCACTCCTGGGGC | 59.080 | 55.000 | 0.00 | 0.00 | 38.25 | 5.80 |
4339 | 5884 | 9.097257 | CCGTATGCAATTTTCCTTTATTTTCAT | 57.903 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
4454 | 6004 | 4.270834 | GGGAAAGTGGAAGAATCCCTTAC | 58.729 | 47.826 | 1.89 | 0.00 | 45.95 | 2.34 |
4466 | 6016 | 2.241281 | TCCCTTACTGGAACGGATCA | 57.759 | 50.000 | 0.00 | 0.00 | 38.67 | 2.92 |
4487 | 6037 | 3.703001 | ACGTCCATCTTCAATCCAACT | 57.297 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
4491 | 6041 | 3.944015 | GTCCATCTTCAATCCAACTCCTG | 59.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
4506 | 6056 | 0.388520 | TCCTGCAGATTCGACACGTG | 60.389 | 55.000 | 17.39 | 15.48 | 0.00 | 4.49 |
4510 | 6060 | 1.352156 | GCAGATTCGACACGTGTCCC | 61.352 | 60.000 | 36.01 | 23.93 | 41.86 | 4.46 |
4623 | 6174 | 0.606673 | GTGTGCCCCTCCTTTCTGTC | 60.607 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4624 | 6175 | 1.002011 | GTGCCCCTCCTTTCTGTCC | 60.002 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
4630 | 6181 | 1.199615 | CCTCCTTTCTGTCCCTCTCC | 58.800 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 4.988598 | CGACAGTTGGCGCCCACT | 62.989 | 66.667 | 26.54 | 26.54 | 40.91 | 4.00 |
37 | 38 | 4.643784 | ACACTACTGTTAGACCTATTCCCG | 59.356 | 45.833 | 0.00 | 0.00 | 0.00 | 5.14 |
50 | 51 | 2.762327 | CGTACCCCCATACACTACTGTT | 59.238 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
82 | 83 | 1.445871 | TGCGTCGTAGCAAGACTCTA | 58.554 | 50.000 | 5.20 | 0.00 | 45.06 | 2.43 |
137 | 138 | 2.572104 | GTGGGGTTGTTATCTCCTCTGT | 59.428 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
139 | 140 | 1.831736 | CGTGGGGTTGTTATCTCCTCT | 59.168 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
146 | 147 | 0.248289 | CCGAGACGTGGGGTTGTTAT | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 1.89 |
156 | 157 | 2.126307 | CCAGAGCACCGAGACGTG | 60.126 | 66.667 | 0.00 | 0.00 | 36.80 | 4.49 |
195 | 196 | 5.765182 | AGGGTTCACAATCTCTTGTTAACTG | 59.235 | 40.000 | 7.22 | 0.14 | 43.88 | 3.16 |
200 | 201 | 4.536765 | ACAAGGGTTCACAATCTCTTGTT | 58.463 | 39.130 | 4.84 | 0.00 | 43.05 | 2.83 |
238 | 239 | 3.415212 | ACGGGCGTACTCTATATAAGCA | 58.585 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
257 | 258 | 0.533755 | GGGAGCATTCATCAGGGACG | 60.534 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
259 | 260 | 1.526315 | ATGGGAGCATTCATCAGGGA | 58.474 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
294 | 296 | 5.605069 | AGTAATTGTTGCCTTTAAAACCCCT | 59.395 | 36.000 | 0.00 | 0.00 | 0.00 | 4.79 |
313 | 315 | 8.910944 | ACAGTCAATATAGACGTTACCAGTAAT | 58.089 | 33.333 | 0.00 | 0.00 | 43.24 | 1.89 |
366 | 368 | 2.002586 | CTCATCAAGATCGCAACGGTT | 58.997 | 47.619 | 0.00 | 0.00 | 0.00 | 4.44 |
411 | 413 | 3.008157 | TCTCACTCGGAGTACTTGAGTCT | 59.992 | 47.826 | 22.04 | 6.20 | 44.40 | 3.24 |
461 | 464 | 2.104111 | TCGGAAGACAACAACCACTCAT | 59.896 | 45.455 | 0.00 | 0.00 | 33.31 | 2.90 |
472 | 475 | 2.814280 | GAGAACCACTCGGAAGACAA | 57.186 | 50.000 | 0.00 | 0.00 | 35.84 | 3.18 |
523 | 526 | 1.005037 | CACTGCAACTACGCCCAGA | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
530 | 533 | 1.157870 | ACACCGTGCACTGCAACTAC | 61.158 | 55.000 | 16.19 | 0.00 | 41.47 | 2.73 |
577 | 582 | 5.580998 | ACATATACCGATGATAGGGTCACT | 58.419 | 41.667 | 0.00 | 0.00 | 40.28 | 3.41 |
589 | 594 | 4.395625 | TCTTGACGAGGACATATACCGAT | 58.604 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
592 | 597 | 4.379603 | CCGATCTTGACGAGGACATATACC | 60.380 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
620 | 625 | 3.508840 | CCGCCGAACCTTGATGCC | 61.509 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
621 | 626 | 3.508840 | CCCGCCGAACCTTGATGC | 61.509 | 66.667 | 0.00 | 0.00 | 0.00 | 3.91 |
630 | 635 | 4.444838 | CATGGACGACCCGCCGAA | 62.445 | 66.667 | 0.34 | 0.00 | 37.93 | 4.30 |
655 | 660 | 3.516949 | TTCCCAAAACCCTCCCGGC | 62.517 | 63.158 | 0.00 | 0.00 | 33.26 | 6.13 |
675 | 680 | 3.635591 | GACAACCATCATTTCCCTCCAT | 58.364 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
688 | 693 | 2.668212 | CGGTGGCACGACAACCAT | 60.668 | 61.111 | 12.17 | 0.00 | 38.46 | 3.55 |
715 | 720 | 1.228613 | CGCCTACTCCTCCCCCTAG | 60.229 | 68.421 | 0.00 | 0.00 | 0.00 | 3.02 |
754 | 759 | 0.874175 | TTTGCCTCGACGCGGATATG | 60.874 | 55.000 | 12.47 | 0.00 | 0.00 | 1.78 |
757 | 762 | 2.173669 | CATTTGCCTCGACGCGGAT | 61.174 | 57.895 | 12.47 | 0.00 | 0.00 | 4.18 |
762 | 767 | 1.714794 | AAGTCTCATTTGCCTCGACG | 58.285 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
781 | 786 | 4.528920 | CACCCATTCCCGGTCTAAATTTA | 58.471 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
788 | 793 | 2.124085 | TCCACCCATTCCCGGTCT | 59.876 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
790 | 795 | 2.530661 | TGTCCACCCATTCCCGGT | 60.531 | 61.111 | 0.00 | 0.00 | 0.00 | 5.28 |
792 | 797 | 1.078426 | GTCTGTCCACCCATTCCCG | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
795 | 800 | 0.391263 | GTCCGTCTGTCCACCCATTC | 60.391 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
800 | 805 | 0.249573 | TTTTCGTCCGTCTGTCCACC | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
809 | 814 | 2.308039 | GCGTCTGCTTTTCGTCCGT | 61.308 | 57.895 | 0.00 | 0.00 | 38.39 | 4.69 |
816 | 821 | 2.022129 | CGGACTCGCGTCTGCTTTT | 61.022 | 57.895 | 5.77 | 0.00 | 39.50 | 2.27 |
822 | 827 | 0.179078 | ATCTAGACGGACTCGCGTCT | 60.179 | 55.000 | 17.65 | 17.65 | 45.78 | 4.18 |
836 | 841 | 1.944676 | GTCCAACGCGCCGATCTAG | 60.945 | 63.158 | 5.73 | 0.00 | 0.00 | 2.43 |
838 | 843 | 4.814294 | GGTCCAACGCGCCGATCT | 62.814 | 66.667 | 5.73 | 0.00 | 0.00 | 2.75 |
852 | 857 | 3.545426 | CGCCGGAAATAGAAAAATCGGTC | 60.545 | 47.826 | 5.05 | 0.00 | 38.41 | 4.79 |
853 | 858 | 2.353579 | CGCCGGAAATAGAAAAATCGGT | 59.646 | 45.455 | 5.05 | 0.00 | 38.41 | 4.69 |
855 | 860 | 3.545426 | GGTCGCCGGAAATAGAAAAATCG | 60.545 | 47.826 | 5.05 | 0.00 | 0.00 | 3.34 |
856 | 861 | 3.242969 | GGGTCGCCGGAAATAGAAAAATC | 60.243 | 47.826 | 5.05 | 0.00 | 0.00 | 2.17 |
857 | 862 | 2.686405 | GGGTCGCCGGAAATAGAAAAAT | 59.314 | 45.455 | 5.05 | 0.00 | 0.00 | 1.82 |
858 | 863 | 2.086094 | GGGTCGCCGGAAATAGAAAAA | 58.914 | 47.619 | 5.05 | 0.00 | 0.00 | 1.94 |
860 | 865 | 0.614294 | TGGGTCGCCGGAAATAGAAA | 59.386 | 50.000 | 5.05 | 0.00 | 0.00 | 2.52 |
862 | 867 | 0.614294 | TTTGGGTCGCCGGAAATAGA | 59.386 | 50.000 | 5.05 | 0.00 | 0.00 | 1.98 |
863 | 868 | 0.730840 | GTTTGGGTCGCCGGAAATAG | 59.269 | 55.000 | 5.05 | 0.00 | 0.00 | 1.73 |
864 | 869 | 1.020333 | CGTTTGGGTCGCCGGAAATA | 61.020 | 55.000 | 5.05 | 0.00 | 0.00 | 1.40 |
865 | 870 | 2.329614 | CGTTTGGGTCGCCGGAAAT | 61.330 | 57.895 | 5.05 | 0.00 | 0.00 | 2.17 |
869 | 874 | 3.374012 | TATCCGTTTGGGTCGCCGG | 62.374 | 63.158 | 0.00 | 0.00 | 41.75 | 6.13 |
871 | 876 | 2.169146 | CGTATCCGTTTGGGTCGCC | 61.169 | 63.158 | 0.00 | 0.00 | 37.00 | 5.54 |
884 | 906 | 7.482113 | CACCGACTCATTTCATCTATACGTATC | 59.518 | 40.741 | 12.24 | 0.00 | 0.00 | 2.24 |
886 | 908 | 6.665465 | CACCGACTCATTTCATCTATACGTA | 58.335 | 40.000 | 0.00 | 0.00 | 0.00 | 3.57 |
889 | 911 | 5.289595 | TGCACCGACTCATTTCATCTATAC | 58.710 | 41.667 | 0.00 | 0.00 | 0.00 | 1.47 |
891 | 913 | 4.406648 | TGCACCGACTCATTTCATCTAT | 57.593 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
892 | 914 | 3.885724 | TGCACCGACTCATTTCATCTA | 57.114 | 42.857 | 0.00 | 0.00 | 0.00 | 1.98 |
894 | 916 | 3.374988 | TCAATGCACCGACTCATTTCATC | 59.625 | 43.478 | 0.00 | 0.00 | 31.15 | 2.92 |
895 | 917 | 3.346315 | TCAATGCACCGACTCATTTCAT | 58.654 | 40.909 | 0.00 | 0.00 | 31.15 | 2.57 |
896 | 918 | 2.777094 | TCAATGCACCGACTCATTTCA | 58.223 | 42.857 | 0.00 | 0.00 | 31.15 | 2.69 |
897 | 919 | 3.189287 | ACTTCAATGCACCGACTCATTTC | 59.811 | 43.478 | 0.00 | 0.00 | 31.15 | 2.17 |
899 | 921 | 2.783135 | ACTTCAATGCACCGACTCATT | 58.217 | 42.857 | 0.00 | 0.00 | 33.56 | 2.57 |
900 | 922 | 2.479566 | ACTTCAATGCACCGACTCAT | 57.520 | 45.000 | 0.00 | 0.00 | 0.00 | 2.90 |
901 | 923 | 1.872952 | CAACTTCAATGCACCGACTCA | 59.127 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
903 | 925 | 0.593128 | GCAACTTCAATGCACCGACT | 59.407 | 50.000 | 0.00 | 0.00 | 43.29 | 4.18 |
904 | 926 | 0.593128 | AGCAACTTCAATGCACCGAC | 59.407 | 50.000 | 0.00 | 0.00 | 46.22 | 4.79 |
905 | 927 | 0.874390 | GAGCAACTTCAATGCACCGA | 59.126 | 50.000 | 0.00 | 0.00 | 46.22 | 4.69 |
906 | 928 | 0.877071 | AGAGCAACTTCAATGCACCG | 59.123 | 50.000 | 0.00 | 0.00 | 46.22 | 4.94 |
907 | 929 | 3.119708 | CCTAAGAGCAACTTCAATGCACC | 60.120 | 47.826 | 0.00 | 0.00 | 46.22 | 5.01 |
916 | 938 | 4.844349 | TTGGATAGCCTAAGAGCAACTT | 57.156 | 40.909 | 0.00 | 2.10 | 42.04 | 2.66 |
928 | 950 | 4.381932 | CCCATTTTGTCTGTTTGGATAGCC | 60.382 | 45.833 | 0.00 | 0.00 | 0.00 | 3.93 |
940 | 962 | 6.279513 | TGCGATTTTATTCCCATTTTGTCT | 57.720 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
949 | 971 | 4.853924 | ATGGACATGCGATTTTATTCCC | 57.146 | 40.909 | 0.00 | 0.00 | 0.00 | 3.97 |
950 | 972 | 5.463061 | CCAAATGGACATGCGATTTTATTCC | 59.537 | 40.000 | 0.00 | 0.00 | 33.35 | 3.01 |
952 | 974 | 5.358922 | CCCAAATGGACATGCGATTTTATT | 58.641 | 37.500 | 0.00 | 0.00 | 33.35 | 1.40 |
954 | 976 | 3.131933 | CCCCAAATGGACATGCGATTTTA | 59.868 | 43.478 | 0.00 | 0.00 | 33.35 | 1.52 |
959 | 981 | 0.621082 | TACCCCAAATGGACATGCGA | 59.379 | 50.000 | 0.00 | 0.00 | 37.39 | 5.10 |
961 | 983 | 2.143876 | ACTACCCCAAATGGACATGC | 57.856 | 50.000 | 0.00 | 0.00 | 37.39 | 4.06 |
962 | 984 | 2.760092 | CCAACTACCCCAAATGGACATG | 59.240 | 50.000 | 0.00 | 0.00 | 37.39 | 3.21 |
973 | 995 | 3.496870 | GATCATGGTGATCCAACTACCCC | 60.497 | 52.174 | 8.41 | 0.00 | 45.66 | 4.95 |
995 | 1017 | 2.351726 | GACGATGGGGAGAACATTTTCG | 59.648 | 50.000 | 0.00 | 0.00 | 36.78 | 3.46 |
1433 | 1462 | 2.513204 | CATGGGCGAGTGGAGCAG | 60.513 | 66.667 | 0.00 | 0.00 | 36.08 | 4.24 |
1463 | 1492 | 1.739338 | CTTCCTCCCTGACCGATCCG | 61.739 | 65.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1470 | 1499 | 2.551071 | CCACAGAAACTTCCTCCCTGAC | 60.551 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
1480 | 1509 | 1.756538 | CCAAGTTGCCCACAGAAACTT | 59.243 | 47.619 | 0.00 | 0.00 | 43.18 | 2.66 |
1488 | 1517 | 1.270550 | CAGATCAACCAAGTTGCCCAC | 59.729 | 52.381 | 0.00 | 0.00 | 42.55 | 4.61 |
1495 | 1524 | 1.612726 | GCTGGAGCAGATCAACCAAGT | 60.613 | 52.381 | 0.00 | 0.00 | 41.59 | 3.16 |
1505 | 1534 | 3.282271 | CAGAGACGCTGGAGCAGA | 58.718 | 61.111 | 0.00 | 0.00 | 41.07 | 4.26 |
1567 | 1596 | 7.447545 | TCCGTAGAGCATACATTCTACATTACT | 59.552 | 37.037 | 11.01 | 0.00 | 43.74 | 2.24 |
1569 | 1598 | 7.447545 | ACTCCGTAGAGCATACATTCTACATTA | 59.552 | 37.037 | 11.01 | 0.00 | 43.74 | 1.90 |
1582 | 1611 | 2.158928 | ACGTAGAGACTCCGTAGAGCAT | 60.159 | 50.000 | 5.13 | 0.00 | 44.65 | 3.79 |
1598 | 1627 | 6.922980 | TCGAGTCATTCTACAAAAACGTAG | 57.077 | 37.500 | 0.00 | 0.00 | 40.26 | 3.51 |
1617 | 1646 | 2.284263 | TGTGTCTAGCAGCATTCGAG | 57.716 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1628 | 1657 | 5.997746 | TGATTGAGGAAACCTTTGTGTCTAG | 59.002 | 40.000 | 0.00 | 0.00 | 31.76 | 2.43 |
1718 | 1747 | 7.096023 | CGTAAGATATTGACTTGCTACATCACC | 60.096 | 40.741 | 0.00 | 0.00 | 43.02 | 4.02 |
1744 | 1773 | 4.083484 | CCGGTTGTCTCAGATTGGTAAAAC | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
1745 | 1774 | 4.069304 | CCGGTTGTCTCAGATTGGTAAAA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
1746 | 1775 | 3.670625 | CCGGTTGTCTCAGATTGGTAAA | 58.329 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
1934 | 1966 | 0.108138 | GGGATCTGTCTCACAACCCG | 60.108 | 60.000 | 0.00 | 0.00 | 30.67 | 5.28 |
1977 | 2009 | 3.830536 | ATCCATTGACTACAAGGGGTCCT | 60.831 | 47.826 | 12.44 | 0.00 | 46.43 | 3.85 |
2052 | 2091 | 8.782144 | TCAAAATTTGATTAAAGGAAATGTGGC | 58.218 | 29.630 | 4.03 | 0.00 | 34.08 | 5.01 |
2169 | 2208 | 6.127814 | CGCCAATTCCATGCTAATTATCAGAT | 60.128 | 38.462 | 4.50 | 0.00 | 0.00 | 2.90 |
2273 | 2312 | 6.265422 | ACAACCAGTTTCAAAAGGGATAAGAG | 59.735 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
2480 | 2520 | 1.695242 | ACAACGTCCTGGTAACCATCA | 59.305 | 47.619 | 0.00 | 0.00 | 30.82 | 3.07 |
2737 | 2777 | 7.710676 | TGCTGGTAACCATTACATTTACATT | 57.289 | 32.000 | 1.47 | 0.00 | 37.88 | 2.71 |
2755 | 2795 | 4.763793 | GCATAGATGTTCCATAATGCTGGT | 59.236 | 41.667 | 12.98 | 0.00 | 37.37 | 4.00 |
2951 | 2991 | 2.239907 | GTTCACCTCCCCTAGCATCTTT | 59.760 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3628 | 3670 | 4.201763 | GCTTCATTGATCTCGACCTTCAAC | 60.202 | 45.833 | 0.00 | 0.00 | 32.61 | 3.18 |
3636 | 3678 | 3.874392 | TGTCTGCTTCATTGATCTCGA | 57.126 | 42.857 | 0.00 | 0.00 | 0.00 | 4.04 |
3641 | 3683 | 5.732528 | GCGATCATTTGTCTGCTTCATTGAT | 60.733 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3669 | 3711 | 7.553881 | ACACGATGATCCAAAAAGGTTATAG | 57.446 | 36.000 | 0.00 | 0.00 | 39.02 | 1.31 |
3740 | 3782 | 1.169577 | TGCCAACAACGACACAAGTT | 58.830 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
3804 | 3847 | 8.592529 | TCACATCCATTTCTATTCCAAATTCA | 57.407 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
3823 | 3866 | 5.179368 | TCGAAAGACAGGAAAACATCACATC | 59.821 | 40.000 | 0.00 | 0.00 | 33.31 | 3.06 |
3829 | 3872 | 6.697019 | CACAAAATCGAAAGACAGGAAAACAT | 59.303 | 34.615 | 0.00 | 0.00 | 46.97 | 2.71 |
3882 | 3925 | 2.439883 | ACTCCGAGCGGGTCCTAC | 60.440 | 66.667 | 9.29 | 0.00 | 37.00 | 3.18 |
4201 | 4248 | 5.537188 | TGTGTCAACAATTCCTAAAATGGC | 58.463 | 37.500 | 0.00 | 0.00 | 31.82 | 4.40 |
4203 | 4250 | 9.859427 | ACATATGTGTCAACAATTCCTAAAATG | 57.141 | 29.630 | 7.78 | 0.00 | 40.46 | 2.32 |
4207 | 4254 | 7.093988 | CCCAACATATGTGTCAACAATTCCTAA | 60.094 | 37.037 | 9.63 | 0.00 | 40.46 | 2.69 |
4209 | 4256 | 5.185635 | CCCAACATATGTGTCAACAATTCCT | 59.814 | 40.000 | 9.63 | 0.00 | 40.46 | 3.36 |
4210 | 4257 | 5.184864 | TCCCAACATATGTGTCAACAATTCC | 59.815 | 40.000 | 9.63 | 0.00 | 40.46 | 3.01 |
4211 | 4258 | 6.266168 | TCCCAACATATGTGTCAACAATTC | 57.734 | 37.500 | 9.63 | 0.00 | 40.46 | 2.17 |
4212 | 4259 | 5.336690 | GCTCCCAACATATGTGTCAACAATT | 60.337 | 40.000 | 9.63 | 0.00 | 40.46 | 2.32 |
4213 | 4260 | 4.158394 | GCTCCCAACATATGTGTCAACAAT | 59.842 | 41.667 | 9.63 | 0.00 | 40.46 | 2.71 |
4214 | 4261 | 3.505680 | GCTCCCAACATATGTGTCAACAA | 59.494 | 43.478 | 9.63 | 0.00 | 40.46 | 2.83 |
4215 | 4262 | 3.081061 | GCTCCCAACATATGTGTCAACA | 58.919 | 45.455 | 9.63 | 0.00 | 37.67 | 3.33 |
4216 | 4263 | 3.081061 | TGCTCCCAACATATGTGTCAAC | 58.919 | 45.455 | 9.63 | 0.00 | 37.67 | 3.18 |
4217 | 4264 | 3.431673 | TGCTCCCAACATATGTGTCAA | 57.568 | 42.857 | 9.63 | 0.00 | 37.67 | 3.18 |
4218 | 4265 | 3.281158 | CATGCTCCCAACATATGTGTCA | 58.719 | 45.455 | 9.63 | 2.23 | 37.67 | 3.58 |
4219 | 4266 | 2.620115 | CCATGCTCCCAACATATGTGTC | 59.380 | 50.000 | 9.63 | 0.00 | 37.67 | 3.67 |
4220 | 4267 | 2.025037 | ACCATGCTCCCAACATATGTGT | 60.025 | 45.455 | 9.63 | 0.00 | 41.28 | 3.72 |
4221 | 4268 | 2.658285 | ACCATGCTCCCAACATATGTG | 58.342 | 47.619 | 9.63 | 3.84 | 0.00 | 3.21 |
4222 | 4269 | 4.655963 | GATACCATGCTCCCAACATATGT | 58.344 | 43.478 | 1.41 | 1.41 | 0.00 | 2.29 |
4223 | 4270 | 3.686241 | CGATACCATGCTCCCAACATATG | 59.314 | 47.826 | 0.00 | 0.00 | 0.00 | 1.78 |
4224 | 4271 | 3.327757 | ACGATACCATGCTCCCAACATAT | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
4225 | 4272 | 2.703536 | ACGATACCATGCTCCCAACATA | 59.296 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
4226 | 4273 | 1.490490 | ACGATACCATGCTCCCAACAT | 59.510 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
4227 | 4274 | 0.908910 | ACGATACCATGCTCCCAACA | 59.091 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
4244 | 4291 | 2.408704 | CGGTGCTTTCAAGACTTAGACG | 59.591 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4306 | 5851 | 1.459450 | AAATTGCATACGGGTTCGCT | 58.541 | 45.000 | 0.00 | 0.00 | 40.63 | 4.93 |
4454 | 6004 | 0.037697 | TGGACGTTGATCCGTTCCAG | 60.038 | 55.000 | 0.00 | 0.00 | 41.98 | 3.86 |
4466 | 6016 | 4.003648 | GAGTTGGATTGAAGATGGACGTT | 58.996 | 43.478 | 0.00 | 0.00 | 0.00 | 3.99 |
4487 | 6037 | 0.388520 | CACGTGTCGAATCTGCAGGA | 60.389 | 55.000 | 15.13 | 0.00 | 0.00 | 3.86 |
4491 | 6041 | 1.352156 | GGGACACGTGTCGAATCTGC | 61.352 | 60.000 | 35.21 | 22.27 | 45.65 | 4.26 |
4506 | 6056 | 0.906066 | GAGGTGGGAAAGAGAGGGAC | 59.094 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4510 | 6060 | 1.199615 | GGAGGAGGTGGGAAAGAGAG | 58.800 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
4581 | 6131 | 1.384525 | CGACGGTGAGGAGAGAGAAT | 58.615 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.