Multiple sequence alignment - TraesCS7B01G149900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G149900 chr7B 100.000 6405 0 0 1 6405 198943426 198937022 0.000000e+00 11828.0
1 TraesCS7B01G149900 chr7B 94.737 209 11 0 1979 2187 561730566 561730358 6.190000e-85 326.0
2 TraesCS7B01G149900 chr7B 94.581 203 11 0 1978 2180 521120871 521121073 1.340000e-81 315.0
3 TraesCS7B01G149900 chr7B 91.765 85 7 0 4995 5079 490685182 490685098 1.130000e-22 119.0
4 TraesCS7B01G149900 chr7D 96.759 2900 62 5 2177 5068 227173681 227170806 0.000000e+00 4806.0
5 TraesCS7B01G149900 chr7D 94.186 1978 100 12 8 1981 227175645 227173679 0.000000e+00 3001.0
6 TraesCS7B01G149900 chr7D 91.633 741 21 14 5116 5850 227170810 227170105 0.000000e+00 987.0
7 TraesCS7B01G149900 chr7D 86.364 572 57 8 5854 6404 170601638 170601067 7.100000e-169 604.0
8 TraesCS7B01G149900 chr7A 98.038 2192 40 3 2803 4993 239037201 239035012 0.000000e+00 3807.0
9 TraesCS7B01G149900 chr7A 95.863 1136 42 5 849 1981 239039188 239038055 0.000000e+00 1832.0
10 TraesCS7B01G149900 chr7A 93.045 762 45 6 1 755 239040404 239039644 0.000000e+00 1107.0
11 TraesCS7B01G149900 chr7A 90.909 770 29 9 5094 5854 239035008 239034271 0.000000e+00 996.0
12 TraesCS7B01G149900 chr7A 94.781 594 17 4 2177 2767 239038057 239037475 0.000000e+00 913.0
13 TraesCS7B01G149900 chr7A 87.986 566 47 11 5851 6404 704266668 704267224 0.000000e+00 649.0
14 TraesCS7B01G149900 chr7A 94.554 202 11 0 1978 2179 521802379 521802178 4.820000e-81 313.0
15 TraesCS7B01G149900 chr7A 90.964 166 2 3 2643 2806 239037477 239037323 1.810000e-50 211.0
16 TraesCS7B01G149900 chr7A 85.870 92 10 3 4992 5082 202000827 202000738 1.900000e-15 95.3
17 TraesCS7B01G149900 chr4B 88.103 580 41 11 5852 6404 171216980 171216402 0.000000e+00 664.0
18 TraesCS7B01G149900 chr2B 87.263 581 43 15 5854 6403 733870268 733870848 9.060000e-178 634.0
19 TraesCS7B01G149900 chr2B 95.522 201 8 1 1979 2179 601897850 601898049 2.880000e-83 320.0
20 TraesCS7B01G149900 chr2B 91.667 84 7 0 4997 5080 386315401 386315318 4.060000e-22 117.0
21 TraesCS7B01G149900 chr5B 87.260 573 50 12 5854 6403 80675603 80676175 3.260000e-177 632.0
22 TraesCS7B01G149900 chr5B 87.086 573 51 12 5854 6403 80270814 80271386 1.520000e-175 627.0
23 TraesCS7B01G149900 chr5B 87.130 575 47 14 5851 6398 87237392 87237966 1.520000e-175 627.0
24 TraesCS7B01G149900 chr1B 87.091 581 46 11 5851 6404 68090111 68089533 1.170000e-176 630.0
25 TraesCS7B01G149900 chr1B 90.588 85 8 0 4995 5079 658497513 658497429 5.250000e-21 113.0
26 TraesCS7B01G149900 chr6D 85.540 574 52 14 5854 6403 307788516 307787950 7.200000e-159 571.0
27 TraesCS7B01G149900 chr3A 84.991 573 62 10 5854 6403 667506226 667506797 1.560000e-155 560.0
28 TraesCS7B01G149900 chr3A 89.250 400 39 4 6005 6402 682247117 682247514 1.240000e-136 497.0
29 TraesCS7B01G149900 chr3A 76.268 611 68 33 5850 6403 661873563 661872973 2.960000e-63 254.0
30 TraesCS7B01G149900 chr3A 89.024 82 8 1 4986 5067 57515211 57515291 4.090000e-17 100.0
31 TraesCS7B01G149900 chr6A 84.843 574 59 17 5852 6404 491041540 491042106 2.610000e-153 553.0
32 TraesCS7B01G149900 chr3B 90.160 437 21 4 5850 6264 165811445 165811881 3.380000e-152 549.0
33 TraesCS7B01G149900 chr3B 83.686 331 40 7 5854 6172 55005004 55005332 3.750000e-77 300.0
34 TraesCS7B01G149900 chr3B 77.041 588 80 27 5854 6403 670191192 670191762 2.920000e-73 287.0
35 TraesCS7B01G149900 chr3B 79.259 405 43 19 5854 6235 36527112 36527498 1.780000e-60 244.0
36 TraesCS7B01G149900 chr6B 94.146 205 12 0 1975 2179 718624598 718624394 4.820000e-81 313.0
37 TraesCS7B01G149900 chr5A 94.975 199 10 0 1981 2179 573810453 573810651 4.820000e-81 313.0
38 TraesCS7B01G149900 chr3D 94.554 202 11 0 1978 2179 205017231 205017030 4.820000e-81 313.0
39 TraesCS7B01G149900 chr3D 81.214 346 33 8 5846 6170 125021646 125021980 3.830000e-62 250.0
40 TraesCS7B01G149900 chr5D 93.689 206 13 0 1981 2186 514455917 514456122 6.240000e-80 309.0
41 TraesCS7B01G149900 chr5D 80.344 407 39 15 5852 6235 540010476 540010088 2.940000e-68 270.0
42 TraesCS7B01G149900 chr1A 93.689 206 13 0 1972 2177 586372718 586372923 6.240000e-80 309.0
43 TraesCS7B01G149900 chr1A 91.765 85 7 0 4995 5079 567970009 567969925 1.130000e-22 119.0
44 TraesCS7B01G149900 chr2D 78.870 407 47 12 5851 6235 527541379 527541768 8.300000e-59 239.0
45 TraesCS7B01G149900 chr2D 89.412 85 8 1 4995 5079 425742652 425742569 8.780000e-19 106.0
46 TraesCS7B01G149900 chr1D 86.022 93 11 2 4995 5086 22976617 22976526 1.470000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G149900 chr7B 198937022 198943426 6404 True 11828.000000 11828 100.000000 1 6405 1 chr7B.!!$R1 6404
1 TraesCS7B01G149900 chr7D 227170105 227175645 5540 True 2931.333333 4806 94.192667 8 5850 3 chr7D.!!$R2 5842
2 TraesCS7B01G149900 chr7D 170601067 170601638 571 True 604.000000 604 86.364000 5854 6404 1 chr7D.!!$R1 550
3 TraesCS7B01G149900 chr7A 239034271 239040404 6133 True 1477.666667 3807 93.933333 1 5854 6 chr7A.!!$R3 5853
4 TraesCS7B01G149900 chr7A 704266668 704267224 556 False 649.000000 649 87.986000 5851 6404 1 chr7A.!!$F1 553
5 TraesCS7B01G149900 chr4B 171216402 171216980 578 True 664.000000 664 88.103000 5852 6404 1 chr4B.!!$R1 552
6 TraesCS7B01G149900 chr2B 733870268 733870848 580 False 634.000000 634 87.263000 5854 6403 1 chr2B.!!$F2 549
7 TraesCS7B01G149900 chr5B 80675603 80676175 572 False 632.000000 632 87.260000 5854 6403 1 chr5B.!!$F2 549
8 TraesCS7B01G149900 chr5B 80270814 80271386 572 False 627.000000 627 87.086000 5854 6403 1 chr5B.!!$F1 549
9 TraesCS7B01G149900 chr5B 87237392 87237966 574 False 627.000000 627 87.130000 5851 6398 1 chr5B.!!$F3 547
10 TraesCS7B01G149900 chr1B 68089533 68090111 578 True 630.000000 630 87.091000 5851 6404 1 chr1B.!!$R1 553
11 TraesCS7B01G149900 chr6D 307787950 307788516 566 True 571.000000 571 85.540000 5854 6403 1 chr6D.!!$R1 549
12 TraesCS7B01G149900 chr3A 667506226 667506797 571 False 560.000000 560 84.991000 5854 6403 1 chr3A.!!$F2 549
13 TraesCS7B01G149900 chr3A 661872973 661873563 590 True 254.000000 254 76.268000 5850 6403 1 chr3A.!!$R1 553
14 TraesCS7B01G149900 chr6A 491041540 491042106 566 False 553.000000 553 84.843000 5852 6404 1 chr6A.!!$F1 552
15 TraesCS7B01G149900 chr3B 670191192 670191762 570 False 287.000000 287 77.041000 5854 6403 1 chr3B.!!$F4 549


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 389 0.249322 CCTTCACGGTTCGACACACT 60.249 55.000 0.00 0.0 0.00 3.55 F
392 397 1.005347 GGTTCGACACACTCACAAACG 60.005 52.381 0.00 0.0 0.00 3.60 F
2015 2391 0.178301 GAGGTGCTTAGGGTAGGTGC 59.822 60.000 0.00 0.0 0.00 5.01 F
2125 2501 0.182775 ACCGGTGCCTCAGAAAAACT 59.817 50.000 6.12 0.0 0.00 2.66 F
2175 2551 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.000 14.66 0.0 0.00 5.19 F
3475 4097 0.535102 CACTTCGTTGGCTGAGGGTT 60.535 55.000 0.00 0.0 0.00 4.11 F
5090 5712 1.555075 GAGGGAGTATGTTGCAGTCCA 59.445 52.381 0.00 0.0 37.26 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2372 0.178301 GCACCTACCCTAAGCACCTC 59.822 60.000 0.00 0.0 0.00 3.85 R
2106 2482 0.182775 AGTTTTTCTGAGGCACCGGT 59.817 50.000 0.00 0.0 0.00 5.28 R
3475 4097 2.031508 GCCGAATTCTCGTCCAAACAAA 60.032 45.455 3.52 0.0 43.87 2.83 R
4108 4730 0.987294 CATGAGACCTCCCCACACTT 59.013 55.000 0.00 0.0 0.00 3.16 R
4143 4765 6.520272 ACGATAGGGAATTCATCTTCTTGAG 58.480 40.000 7.93 0.0 43.77 3.02 R
5260 5886 1.202521 TCTTGCTGAAACGCTGACTCA 60.203 47.619 0.00 0.0 0.00 3.41 R
5970 6616 2.810458 CGCAAATTTGGGCCGCAG 60.810 61.111 20.60 0.0 34.31 5.18 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.968405 CCATTGCTGTAACAAACTTAGGATTAC 59.032 37.037 0.00 0.00 32.27 1.89
72 73 6.037172 CCATCTCACTATCACTTTTTAACGGG 59.963 42.308 0.00 0.00 0.00 5.28
85 86 1.129917 TAACGGGTGTCCTCAAACCA 58.870 50.000 0.00 0.00 38.27 3.67
116 119 1.545582 CAATCGCCACTTTCCACCATT 59.454 47.619 0.00 0.00 0.00 3.16
158 161 5.618056 ATTGATACATGTCGAATCATGCC 57.382 39.130 14.15 6.39 46.15 4.40
219 222 1.134226 AACGCAACGACGAGTAAAGG 58.866 50.000 0.00 0.00 36.70 3.11
257 260 5.106594 TGCAATGCTACAATCAGTTGTACTG 60.107 40.000 6.82 0.40 46.37 2.74
289 292 8.514330 AGGCGTTATCTTTCATTATTTAACCA 57.486 30.769 0.00 0.00 0.00 3.67
376 381 2.046285 CATGCCCCCTTCACGGTTC 61.046 63.158 0.00 0.00 0.00 3.62
384 389 0.249322 CCTTCACGGTTCGACACACT 60.249 55.000 0.00 0.00 0.00 3.55
392 397 1.005347 GGTTCGACACACTCACAAACG 60.005 52.381 0.00 0.00 0.00 3.60
398 403 2.417239 GACACACTCACAAACGTCCAAA 59.583 45.455 0.00 0.00 0.00 3.28
415 420 5.399013 GTCCAAACACCGATATTTCCTTTG 58.601 41.667 0.00 0.00 0.00 2.77
460 465 9.559732 TTATGAGAACTTCATTGAAGAACAAGA 57.440 29.630 28.60 10.96 44.14 3.02
532 537 3.581770 TCATCATCATCCATCACCTCTCC 59.418 47.826 0.00 0.00 0.00 3.71
536 541 2.121948 TCATCCATCACCTCTCCCTTG 58.878 52.381 0.00 0.00 0.00 3.61
594 599 8.285891 TCCTCAACCTCTTCTATAGATTCTCTT 58.714 37.037 2.58 0.00 30.92 2.85
756 767 2.271497 CTCCCCCAGCTCAAGCAG 59.729 66.667 4.59 0.00 45.16 4.24
777 788 3.041940 CGCCATTCCCGCGGATAC 61.042 66.667 30.73 8.63 45.80 2.24
791 802 2.750135 GCGGATACAGAAGAGGAGAGGA 60.750 54.545 0.00 0.00 0.00 3.71
808 819 2.191981 GGAGAATTCACCTCCCCCTA 57.808 55.000 14.07 0.00 43.37 3.53
817 828 1.160289 ACCTCCCCCTAACCTCTCCA 61.160 60.000 0.00 0.00 0.00 3.86
1336 1709 1.097547 ATCACCGGCTGCTAATGCAC 61.098 55.000 0.00 0.00 45.31 4.57
1395 1768 5.809562 CGATTGCTAGATTTCTGACTCTGTT 59.190 40.000 0.00 0.00 0.00 3.16
1463 1837 2.969628 ATTTCGGCGAGAGAGATTGT 57.030 45.000 10.46 0.00 0.00 2.71
1472 1846 3.868077 GCGAGAGAGATTGTTGCTGTTAT 59.132 43.478 0.00 0.00 0.00 1.89
1499 1873 5.139727 TCTATAAGTGATTGGGGCAAATGG 58.860 41.667 0.00 0.00 0.00 3.16
1515 1889 3.604875 AATGGATTTTGCTCCTTGCTG 57.395 42.857 0.00 0.00 43.37 4.41
1523 1897 3.441496 TTGCTCCTTGCTGTTTCTTTG 57.559 42.857 0.00 0.00 43.37 2.77
1544 1918 8.783093 TCTTTGTACCTAAGAATGACATGTTTG 58.217 33.333 0.00 0.00 0.00 2.93
1700 2074 7.615582 TGATCCTAAACATGATCTTGTGAAC 57.384 36.000 14.42 7.35 0.00 3.18
1703 2077 5.412594 TCCTAAACATGATCTTGTGAACTGC 59.587 40.000 14.42 0.00 0.00 4.40
1706 2080 3.402110 ACATGATCTTGTGAACTGCGAA 58.598 40.909 13.08 0.00 0.00 4.70
1710 2084 5.072040 TGATCTTGTGAACTGCGAAGATA 57.928 39.130 0.00 0.00 35.71 1.98
1752 2126 6.548622 ACAAGGATGATATCTTTGAACATGGG 59.451 38.462 17.12 0.00 45.89 4.00
1871 2245 8.175069 GCACTTCATTTATTAAACGATGAGTGA 58.825 33.333 15.84 3.09 33.95 3.41
1975 2351 5.672421 TTAGGGCTCTTTTCTACTGGTAC 57.328 43.478 0.00 0.00 0.00 3.34
1978 2354 4.536489 AGGGCTCTTTTCTACTGGTACAAT 59.464 41.667 0.00 0.00 38.70 2.71
1979 2355 5.014228 AGGGCTCTTTTCTACTGGTACAATT 59.986 40.000 0.00 0.00 38.70 2.32
1980 2356 6.214819 AGGGCTCTTTTCTACTGGTACAATTA 59.785 38.462 0.00 0.00 38.70 1.40
1981 2357 6.539103 GGGCTCTTTTCTACTGGTACAATTAG 59.461 42.308 0.00 0.00 38.70 1.73
1982 2358 6.539103 GGCTCTTTTCTACTGGTACAATTAGG 59.461 42.308 0.00 0.00 38.70 2.69
1983 2359 6.037281 GCTCTTTTCTACTGGTACAATTAGGC 59.963 42.308 0.00 0.00 38.70 3.93
1984 2360 6.412214 TCTTTTCTACTGGTACAATTAGGCC 58.588 40.000 0.00 0.00 38.70 5.19
1985 2361 6.214819 TCTTTTCTACTGGTACAATTAGGCCT 59.785 38.462 11.78 11.78 38.70 5.19
1986 2362 6.382919 TTTCTACTGGTACAATTAGGCCTT 57.617 37.500 12.58 0.00 38.70 4.35
1987 2363 5.353394 TCTACTGGTACAATTAGGCCTTG 57.647 43.478 12.58 5.83 38.70 3.61
1988 2364 4.781087 TCTACTGGTACAATTAGGCCTTGT 59.219 41.667 12.58 12.87 38.70 3.16
1989 2365 5.959594 TCTACTGGTACAATTAGGCCTTGTA 59.040 40.000 12.58 11.63 38.70 2.41
1996 2372 4.023291 ACAATTAGGCCTTGTACAATGGG 58.977 43.478 12.58 14.91 35.15 4.00
1997 2373 4.264172 ACAATTAGGCCTTGTACAATGGGA 60.264 41.667 12.58 0.00 35.15 4.37
1998 2374 3.644966 TTAGGCCTTGTACAATGGGAG 57.355 47.619 12.58 1.65 0.00 4.30
1999 2375 0.625849 AGGCCTTGTACAATGGGAGG 59.374 55.000 16.08 11.34 0.00 4.30
2000 2376 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
2001 2377 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
2002 2378 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
2003 2379 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
2004 2380 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
2005 2381 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
2006 2382 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
2007 2383 2.238646 TGTACAATGGGAGGTGCTTAGG 59.761 50.000 0.00 0.00 0.00 2.69
2008 2384 0.625849 ACAATGGGAGGTGCTTAGGG 59.374 55.000 0.00 0.00 0.00 3.53
2009 2385 0.625849 CAATGGGAGGTGCTTAGGGT 59.374 55.000 0.00 0.00 0.00 4.34
2010 2386 1.843851 CAATGGGAGGTGCTTAGGGTA 59.156 52.381 0.00 0.00 0.00 3.69
2011 2387 1.807814 ATGGGAGGTGCTTAGGGTAG 58.192 55.000 0.00 0.00 0.00 3.18
2012 2388 0.326238 TGGGAGGTGCTTAGGGTAGG 60.326 60.000 0.00 0.00 0.00 3.18
2013 2389 0.326332 GGGAGGTGCTTAGGGTAGGT 60.326 60.000 0.00 0.00 0.00 3.08
2014 2390 0.831307 GGAGGTGCTTAGGGTAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
2015 2391 0.178301 GAGGTGCTTAGGGTAGGTGC 59.822 60.000 0.00 0.00 0.00 5.01
2016 2392 0.252742 AGGTGCTTAGGGTAGGTGCT 60.253 55.000 0.00 0.00 0.00 4.40
2017 2393 0.618981 GGTGCTTAGGGTAGGTGCTT 59.381 55.000 0.00 0.00 0.00 3.91
2018 2394 1.835531 GGTGCTTAGGGTAGGTGCTTA 59.164 52.381 0.00 0.00 0.00 3.09
2019 2395 2.158943 GGTGCTTAGGGTAGGTGCTTAG 60.159 54.545 0.00 0.00 0.00 2.18
2020 2396 2.764572 GTGCTTAGGGTAGGTGCTTAGA 59.235 50.000 0.00 0.00 0.00 2.10
2021 2397 3.031736 TGCTTAGGGTAGGTGCTTAGAG 58.968 50.000 0.00 0.00 0.00 2.43
2022 2398 2.365941 GCTTAGGGTAGGTGCTTAGAGG 59.634 54.545 0.00 0.00 0.00 3.69
2023 2399 3.912248 CTTAGGGTAGGTGCTTAGAGGA 58.088 50.000 0.00 0.00 0.00 3.71
2024 2400 2.942604 AGGGTAGGTGCTTAGAGGAA 57.057 50.000 0.00 0.00 0.00 3.36
2025 2401 3.423058 AGGGTAGGTGCTTAGAGGAAT 57.577 47.619 0.00 0.00 0.00 3.01
2026 2402 4.554553 AGGGTAGGTGCTTAGAGGAATA 57.445 45.455 0.00 0.00 0.00 1.75
2027 2403 4.892198 AGGGTAGGTGCTTAGAGGAATAA 58.108 43.478 0.00 0.00 0.00 1.40
2028 2404 5.286221 AGGGTAGGTGCTTAGAGGAATAAA 58.714 41.667 0.00 0.00 0.00 1.40
2029 2405 5.911766 AGGGTAGGTGCTTAGAGGAATAAAT 59.088 40.000 0.00 0.00 0.00 1.40
2030 2406 6.043358 AGGGTAGGTGCTTAGAGGAATAAATC 59.957 42.308 0.00 0.00 0.00 2.17
2031 2407 6.183361 GGGTAGGTGCTTAGAGGAATAAATCA 60.183 42.308 0.00 0.00 0.00 2.57
2032 2408 6.931840 GGTAGGTGCTTAGAGGAATAAATCAG 59.068 42.308 0.00 0.00 0.00 2.90
2033 2409 5.934781 AGGTGCTTAGAGGAATAAATCAGG 58.065 41.667 0.00 0.00 0.00 3.86
2034 2410 4.517075 GGTGCTTAGAGGAATAAATCAGGC 59.483 45.833 0.00 0.00 0.00 4.85
2035 2411 5.372373 GTGCTTAGAGGAATAAATCAGGCT 58.628 41.667 0.00 0.00 0.00 4.58
2036 2412 5.825151 GTGCTTAGAGGAATAAATCAGGCTT 59.175 40.000 0.00 0.00 0.00 4.35
2037 2413 6.319911 GTGCTTAGAGGAATAAATCAGGCTTT 59.680 38.462 0.00 0.00 0.00 3.51
2038 2414 6.543831 TGCTTAGAGGAATAAATCAGGCTTTC 59.456 38.462 0.00 0.00 0.00 2.62
2039 2415 6.016693 GCTTAGAGGAATAAATCAGGCTTTCC 60.017 42.308 5.44 5.44 36.84 3.13
2040 2416 5.723860 AGAGGAATAAATCAGGCTTTCCT 57.276 39.130 14.23 14.23 46.74 3.36
2041 2417 6.084749 AGAGGAATAAATCAGGCTTTCCTT 57.915 37.500 15.20 5.29 44.70 3.36
2042 2418 7.213178 AGAGGAATAAATCAGGCTTTCCTTA 57.787 36.000 15.20 0.00 44.70 2.69
2043 2419 7.643123 AGAGGAATAAATCAGGCTTTCCTTAA 58.357 34.615 15.20 0.00 44.70 1.85
2044 2420 7.777440 AGAGGAATAAATCAGGCTTTCCTTAAG 59.223 37.037 15.20 0.00 44.70 1.85
2065 2441 3.740044 CACCGGTGCTTATTTGTACAG 57.260 47.619 24.02 0.00 0.00 2.74
2066 2442 2.418628 CACCGGTGCTTATTTGTACAGG 59.581 50.000 24.02 0.00 41.71 4.00
2067 2443 2.014128 CCGGTGCTTATTTGTACAGGG 58.986 52.381 0.00 0.00 35.20 4.45
2068 2444 2.617021 CCGGTGCTTATTTGTACAGGGT 60.617 50.000 0.00 0.00 35.20 4.34
2069 2445 3.369681 CCGGTGCTTATTTGTACAGGGTA 60.370 47.826 0.00 0.00 35.20 3.69
2070 2446 3.869246 CGGTGCTTATTTGTACAGGGTAG 59.131 47.826 0.00 0.00 0.00 3.18
2071 2447 4.382254 CGGTGCTTATTTGTACAGGGTAGA 60.382 45.833 0.00 0.00 0.00 2.59
2072 2448 4.874396 GGTGCTTATTTGTACAGGGTAGAC 59.126 45.833 0.00 0.00 0.00 2.59
2073 2449 4.565564 GTGCTTATTTGTACAGGGTAGACG 59.434 45.833 0.00 0.00 0.00 4.18
2074 2450 3.554731 GCTTATTTGTACAGGGTAGACGC 59.445 47.826 0.00 0.00 0.00 5.19
2075 2451 4.679905 GCTTATTTGTACAGGGTAGACGCT 60.680 45.833 0.00 0.00 39.95 5.07
2076 2452 3.975168 ATTTGTACAGGGTAGACGCTT 57.025 42.857 0.00 0.00 37.00 4.68
2077 2453 6.528537 TTATTTGTACAGGGTAGACGCTTA 57.471 37.500 0.00 0.00 37.00 3.09
2078 2454 4.870123 TTTGTACAGGGTAGACGCTTAA 57.130 40.909 0.00 0.00 37.00 1.85
2079 2455 3.855689 TGTACAGGGTAGACGCTTAAC 57.144 47.619 0.00 0.00 37.00 2.01
2080 2456 3.424703 TGTACAGGGTAGACGCTTAACT 58.575 45.455 0.00 0.00 37.00 2.24
2081 2457 4.588899 TGTACAGGGTAGACGCTTAACTA 58.411 43.478 0.00 0.00 37.00 2.24
2082 2458 5.009631 TGTACAGGGTAGACGCTTAACTAA 58.990 41.667 0.00 0.00 37.00 2.24
2083 2459 4.715527 ACAGGGTAGACGCTTAACTAAG 57.284 45.455 0.00 0.00 37.00 2.18
2098 2474 7.966246 CTTAACTAAGCGTCTCTCCTATAGA 57.034 40.000 0.00 0.00 0.00 1.98
2099 2475 8.380743 CTTAACTAAGCGTCTCTCCTATAGAA 57.619 38.462 0.00 0.00 32.46 2.10
2100 2476 8.743085 TTAACTAAGCGTCTCTCCTATAGAAA 57.257 34.615 0.00 0.00 32.46 2.52
2101 2477 7.826918 AACTAAGCGTCTCTCCTATAGAAAT 57.173 36.000 0.00 0.00 32.46 2.17
2102 2478 8.921353 AACTAAGCGTCTCTCCTATAGAAATA 57.079 34.615 0.00 0.00 32.46 1.40
2103 2479 8.556213 ACTAAGCGTCTCTCCTATAGAAATAG 57.444 38.462 0.00 0.00 35.73 1.73
2112 2488 3.926616 CCTATAGAAATAGGCACCGGTG 58.073 50.000 30.66 30.66 46.45 4.94
2122 2498 4.473643 CACCGGTGCCTCAGAAAA 57.526 55.556 24.02 0.00 0.00 2.29
2123 2499 2.714259 CACCGGTGCCTCAGAAAAA 58.286 52.632 24.02 0.00 0.00 1.94
2124 2500 0.310854 CACCGGTGCCTCAGAAAAAC 59.689 55.000 24.02 0.00 0.00 2.43
2125 2501 0.182775 ACCGGTGCCTCAGAAAAACT 59.817 50.000 6.12 0.00 0.00 2.66
2126 2502 0.875059 CCGGTGCCTCAGAAAAACTC 59.125 55.000 0.00 0.00 0.00 3.01
2127 2503 0.512952 CGGTGCCTCAGAAAAACTCG 59.487 55.000 0.00 0.00 0.00 4.18
2128 2504 0.875059 GGTGCCTCAGAAAAACTCGG 59.125 55.000 0.00 0.00 0.00 4.63
2129 2505 1.594331 GTGCCTCAGAAAAACTCGGT 58.406 50.000 0.00 0.00 0.00 4.69
2130 2506 1.947456 GTGCCTCAGAAAAACTCGGTT 59.053 47.619 0.00 0.00 0.00 4.44
2131 2507 2.357952 GTGCCTCAGAAAAACTCGGTTT 59.642 45.455 0.00 0.00 37.34 3.27
2132 2508 3.562557 GTGCCTCAGAAAAACTCGGTTTA 59.437 43.478 3.01 0.00 34.43 2.01
2133 2509 4.215613 GTGCCTCAGAAAAACTCGGTTTAT 59.784 41.667 3.01 0.00 34.43 1.40
2134 2510 4.825085 TGCCTCAGAAAAACTCGGTTTATT 59.175 37.500 3.01 1.51 34.43 1.40
2135 2511 5.300792 TGCCTCAGAAAAACTCGGTTTATTT 59.699 36.000 3.01 0.00 34.43 1.40
2136 2512 6.183360 TGCCTCAGAAAAACTCGGTTTATTTT 60.183 34.615 3.01 0.00 34.43 1.82
2137 2513 6.700081 GCCTCAGAAAAACTCGGTTTATTTTT 59.300 34.615 3.01 0.00 38.03 1.94
2138 2514 7.096189 GCCTCAGAAAAACTCGGTTTATTTTTC 60.096 37.037 11.59 11.59 45.95 2.29
2144 2520 9.240159 GAAAAACTCGGTTTATTTTTCTAAGCA 57.760 29.630 12.05 0.00 43.86 3.91
2145 2521 8.570096 AAAACTCGGTTTATTTTTCTAAGCAC 57.430 30.769 3.01 0.00 34.43 4.40
2146 2522 6.250344 ACTCGGTTTATTTTTCTAAGCACC 57.750 37.500 0.00 0.00 0.00 5.01
2147 2523 6.002082 ACTCGGTTTATTTTTCTAAGCACCT 58.998 36.000 0.00 0.00 0.00 4.00
2148 2524 6.489022 ACTCGGTTTATTTTTCTAAGCACCTT 59.511 34.615 0.00 0.00 0.00 3.50
2149 2525 7.013942 ACTCGGTTTATTTTTCTAAGCACCTTT 59.986 33.333 0.00 0.00 0.00 3.11
2150 2526 7.364970 TCGGTTTATTTTTCTAAGCACCTTTC 58.635 34.615 0.00 0.00 0.00 2.62
2151 2527 7.229907 TCGGTTTATTTTTCTAAGCACCTTTCT 59.770 33.333 0.00 0.00 0.00 2.52
2152 2528 8.508875 CGGTTTATTTTTCTAAGCACCTTTCTA 58.491 33.333 0.00 0.00 0.00 2.10
2155 2531 9.908152 TTTATTTTTCTAAGCACCTTTCTAAGC 57.092 29.630 0.00 0.00 0.00 3.09
2156 2532 6.952773 TTTTTCTAAGCACCTTTCTAAGCA 57.047 33.333 0.00 0.00 0.00 3.91
2157 2533 5.941948 TTTCTAAGCACCTTTCTAAGCAC 57.058 39.130 0.00 0.00 0.00 4.40
2158 2534 3.939066 TCTAAGCACCTTTCTAAGCACC 58.061 45.455 0.00 0.00 0.00 5.01
2159 2535 2.959465 AAGCACCTTTCTAAGCACCT 57.041 45.000 0.00 0.00 0.00 4.00
2160 2536 2.481289 AGCACCTTTCTAAGCACCTC 57.519 50.000 0.00 0.00 0.00 3.85
2161 2537 1.003696 AGCACCTTTCTAAGCACCTCC 59.996 52.381 0.00 0.00 0.00 4.30
2162 2538 1.950954 GCACCTTTCTAAGCACCTCCC 60.951 57.143 0.00 0.00 0.00 4.30
2163 2539 1.351017 CACCTTTCTAAGCACCTCCCA 59.649 52.381 0.00 0.00 0.00 4.37
2164 2540 2.025887 CACCTTTCTAAGCACCTCCCAT 60.026 50.000 0.00 0.00 0.00 4.00
2165 2541 2.649816 ACCTTTCTAAGCACCTCCCATT 59.350 45.455 0.00 0.00 0.00 3.16
2166 2542 3.019564 CCTTTCTAAGCACCTCCCATTG 58.980 50.000 0.00 0.00 0.00 2.82
2167 2543 3.562176 CCTTTCTAAGCACCTCCCATTGT 60.562 47.826 0.00 0.00 0.00 2.71
2168 2544 4.324254 CCTTTCTAAGCACCTCCCATTGTA 60.324 45.833 0.00 0.00 0.00 2.41
2169 2545 3.906720 TCTAAGCACCTCCCATTGTAC 57.093 47.619 0.00 0.00 0.00 2.90
2170 2546 3.178046 TCTAAGCACCTCCCATTGTACA 58.822 45.455 0.00 0.00 0.00 2.90
2171 2547 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
2172 2548 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
2173 2549 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
2174 2550 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
2175 2551 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.000 14.66 0.00 0.00 5.19
2295 2678 7.812690 TCTATGATGATATGCAACAAAAGCT 57.187 32.000 0.00 0.00 32.72 3.74
2323 2706 2.031245 TGTTGCTTGATACTTTGTGCGG 60.031 45.455 0.00 0.00 0.00 5.69
2674 3057 7.226918 GGTCTAAAATCATCTAGGGCTGTTAAC 59.773 40.741 0.00 0.00 0.00 2.01
2677 3060 4.965200 ATCATCTAGGGCTGTTAACCTC 57.035 45.455 2.48 0.00 38.30 3.85
2815 3437 6.602009 GGGTAGCACCAAAGTATCTTTACATT 59.398 38.462 7.49 0.00 41.02 2.71
2863 3485 7.917505 GGCCACTTCAGTATATCTTTTCATTTG 59.082 37.037 0.00 0.00 0.00 2.32
2893 3515 7.167924 TCTTGTTTAATTGCTGAATATGGCA 57.832 32.000 0.00 0.00 36.62 4.92
3037 3659 7.595819 TGATGATTTTGTTGGAGTACCTTTT 57.404 32.000 0.00 0.00 37.04 2.27
3475 4097 0.535102 CACTTCGTTGGCTGAGGGTT 60.535 55.000 0.00 0.00 0.00 4.11
3742 4364 5.706833 TGATGTGCAGAAGCTAATTGAGAAA 59.293 36.000 0.00 0.00 42.74 2.52
3862 4484 7.841729 AGTATTCTCTCTATTTCAACTCCTCCA 59.158 37.037 0.00 0.00 0.00 3.86
3925 4547 2.863704 GCAGTGGAGAAATTTGCACACC 60.864 50.000 0.00 0.00 41.31 4.16
4143 4765 4.925646 GTCTCATGAAATTGCAGGGAAAAC 59.074 41.667 0.00 0.00 0.00 2.43
4252 4874 2.554370 GTGTAACTGTAAGCCCACCA 57.446 50.000 0.00 0.00 37.60 4.17
4754 5376 3.538591 GAAGGGAATTCGAATAACCCGT 58.461 45.455 30.38 29.11 44.57 5.28
4844 5466 4.561530 GCATGCTCGAGAATATCCAGGTAA 60.562 45.833 18.75 0.00 0.00 2.85
4870 5492 6.457355 TCATATGCAACATCATTTATTGCCC 58.543 36.000 5.79 0.00 46.53 5.36
4896 5518 6.929049 TGTGTGATACTTTTTGGTAGTCTCTG 59.071 38.462 0.00 0.00 0.00 3.35
5000 5622 7.556844 TCTGAAGTCATTAGTGAAATACTCCC 58.443 38.462 0.00 0.00 40.89 4.30
5006 5628 4.996788 TTAGTGAAATACTCCCTCCGTC 57.003 45.455 0.00 0.00 40.89 4.79
5012 5634 4.285003 TGAAATACTCCCTCCGTCTCAAAA 59.715 41.667 0.00 0.00 0.00 2.44
5019 5641 5.070580 ACTCCCTCCGTCTCAAAATATAAGG 59.929 44.000 0.00 0.00 0.00 2.69
5071 5693 7.504924 AAAACGTCTTCCATTTTGATACAGA 57.495 32.000 0.00 0.00 0.00 3.41
5072 5694 6.727824 AACGTCTTCCATTTTGATACAGAG 57.272 37.500 0.00 0.00 0.00 3.35
5073 5695 5.178797 ACGTCTTCCATTTTGATACAGAGG 58.821 41.667 0.00 0.00 0.00 3.69
5074 5696 4.572389 CGTCTTCCATTTTGATACAGAGGG 59.428 45.833 0.00 0.00 0.00 4.30
5075 5697 5.626809 CGTCTTCCATTTTGATACAGAGGGA 60.627 44.000 0.00 0.00 0.00 4.20
5076 5698 5.819901 GTCTTCCATTTTGATACAGAGGGAG 59.180 44.000 0.00 0.00 0.00 4.30
5077 5699 5.488919 TCTTCCATTTTGATACAGAGGGAGT 59.511 40.000 0.00 0.00 0.00 3.85
5078 5700 6.672218 TCTTCCATTTTGATACAGAGGGAGTA 59.328 38.462 0.00 0.00 0.00 2.59
5079 5701 7.348274 TCTTCCATTTTGATACAGAGGGAGTAT 59.652 37.037 0.00 0.00 35.01 2.12
5080 5702 6.830912 TCCATTTTGATACAGAGGGAGTATG 58.169 40.000 0.00 0.00 32.60 2.39
5081 5703 6.386927 TCCATTTTGATACAGAGGGAGTATGT 59.613 38.462 0.00 0.00 32.60 2.29
5082 5704 7.056635 CCATTTTGATACAGAGGGAGTATGTT 58.943 38.462 0.00 0.00 32.60 2.71
5083 5705 7.012704 CCATTTTGATACAGAGGGAGTATGTTG 59.987 40.741 0.00 0.00 32.60 3.33
5084 5706 4.672587 TGATACAGAGGGAGTATGTTGC 57.327 45.455 0.00 0.00 32.60 4.17
5085 5707 4.030216 TGATACAGAGGGAGTATGTTGCA 58.970 43.478 0.00 0.00 32.60 4.08
5086 5708 4.100035 TGATACAGAGGGAGTATGTTGCAG 59.900 45.833 0.00 0.00 32.60 4.41
5087 5709 2.260822 ACAGAGGGAGTATGTTGCAGT 58.739 47.619 0.00 0.00 0.00 4.40
5088 5710 2.234908 ACAGAGGGAGTATGTTGCAGTC 59.765 50.000 0.00 0.00 0.00 3.51
5089 5711 1.834263 AGAGGGAGTATGTTGCAGTCC 59.166 52.381 0.00 0.00 35.13 3.85
5090 5712 1.555075 GAGGGAGTATGTTGCAGTCCA 59.445 52.381 0.00 0.00 37.26 4.02
5091 5713 2.171448 GAGGGAGTATGTTGCAGTCCAT 59.829 50.000 0.00 0.00 37.26 3.41
5092 5714 3.384168 AGGGAGTATGTTGCAGTCCATA 58.616 45.455 0.00 0.00 37.26 2.74
5107 5729 5.782047 CAGTCCATATGTGCCAAAAGAAAA 58.218 37.500 1.24 0.00 0.00 2.29
5188 5814 6.692849 AACTTGGATCATGCCTATCTATGA 57.307 37.500 0.00 0.00 37.68 2.15
5224 5850 6.111382 ACAATGGATCATGCCTATCTATTCG 58.889 40.000 0.00 2.73 33.71 3.34
5242 5868 1.795872 TCGTCACTAACAATGGTTGCG 59.204 47.619 0.00 0.00 37.88 4.85
5260 5886 6.995686 TGGTTGCGATGTAATTATAGGTGATT 59.004 34.615 0.00 0.00 0.00 2.57
5464 6094 1.995626 GCCCAACCCCTCTCTAGCA 60.996 63.158 0.00 0.00 0.00 3.49
5479 6109 1.607801 TAGCACAGCAGTCGATGGCT 61.608 55.000 7.85 7.85 42.06 4.75
5480 6110 2.037136 GCACAGCAGTCGATGGCTT 61.037 57.895 10.64 1.79 38.56 4.35
5481 6111 1.792301 CACAGCAGTCGATGGCTTG 59.208 57.895 10.64 9.11 38.56 4.01
5482 6112 2.037136 ACAGCAGTCGATGGCTTGC 61.037 57.895 10.64 6.00 38.56 4.01
5483 6113 2.437359 AGCAGTCGATGGCTTGCC 60.437 61.111 7.85 4.43 36.92 4.52
5484 6114 2.437359 GCAGTCGATGGCTTGCCT 60.437 61.111 13.18 0.00 0.00 4.75
5511 6141 2.076863 GTGATAACAGCAAGCGAGGTT 58.923 47.619 0.00 5.45 0.00 3.50
5513 6143 1.324736 GATAACAGCAAGCGAGGTTCG 59.675 52.381 0.00 0.00 43.89 3.95
5527 6160 0.953960 GGTTCGTCGGCCATCTTGTT 60.954 55.000 2.24 0.00 0.00 2.83
5580 6213 8.668653 TGTACATATAGGTTCCATTGGATCATT 58.331 33.333 6.15 1.29 0.00 2.57
5598 6231 4.635223 TCATTCCATTCGAGTCCATCATC 58.365 43.478 0.00 0.00 0.00 2.92
5599 6232 4.101430 TCATTCCATTCGAGTCCATCATCA 59.899 41.667 0.00 0.00 0.00 3.07
5600 6233 4.694760 TTCCATTCGAGTCCATCATCAT 57.305 40.909 0.00 0.00 0.00 2.45
5615 6248 9.778741 GTCCATCATCATGTAACTAATTAAGGA 57.221 33.333 0.00 0.00 0.00 3.36
5799 6434 6.767524 TGCTTCAGTTTTTCTTTCCTGTTA 57.232 33.333 0.00 0.00 0.00 2.41
5860 6495 4.081198 CCTCAGTCAGGTTCTAAGAGCAAT 60.081 45.833 0.00 0.00 37.53 3.56
5957 6603 1.133606 ACCCAAACCCAAATCACGTCT 60.134 47.619 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.037172 CCCGTTAAAAAGTGATAGTGAGATGG 59.963 42.308 0.00 0.00 0.00 3.51
72 73 3.855689 CCATTCATGGTTTGAGGACAC 57.144 47.619 0.00 0.00 43.05 3.67
85 86 2.723746 GCGATTGCGGCCATTCAT 59.276 55.556 2.24 0.00 38.16 2.57
94 95 1.154225 GTGGAAAGTGGCGATTGCG 60.154 57.895 0.00 0.00 44.10 4.85
116 119 7.041635 TCAATTAGTCCGTCGGATGTTAATA 57.958 36.000 18.75 6.02 32.73 0.98
204 207 3.379372 TCCTATCCCTTTACTCGTCGTTG 59.621 47.826 0.00 0.00 0.00 4.10
219 222 2.160417 GCATTGCACGCTATTCCTATCC 59.840 50.000 3.15 0.00 0.00 2.59
253 256 5.864418 AAGATAACGCCTTATGGACAGTA 57.136 39.130 0.00 0.00 34.57 2.74
257 260 6.619801 AATGAAAGATAACGCCTTATGGAC 57.380 37.500 0.00 0.00 34.57 4.02
289 292 5.888161 GGTTTGTGGTCTATTCTGATGGAAT 59.112 40.000 0.00 0.00 45.53 3.01
298 301 3.143728 ACCGTTGGTTTGTGGTCTATTC 58.856 45.455 0.00 0.00 27.29 1.75
376 381 0.575390 GGACGTTTGTGAGTGTGTCG 59.425 55.000 0.00 0.00 0.00 4.35
384 389 0.727970 CGGTGTTTGGACGTTTGTGA 59.272 50.000 0.00 0.00 0.00 3.58
392 397 5.182380 TCAAAGGAAATATCGGTGTTTGGAC 59.818 40.000 0.00 0.00 0.00 4.02
398 403 6.039941 TGTGTTTTCAAAGGAAATATCGGTGT 59.960 34.615 0.00 0.00 42.31 4.16
432 437 9.950680 TTGTTCTTCAATGAAGTTCTCATAAAC 57.049 29.630 20.91 15.21 44.43 2.01
450 455 7.360353 GGCTTATTGGCATTTTTCTTGTTCTTC 60.360 37.037 0.00 0.00 41.37 2.87
460 465 3.774216 TGGCTAGGCTTATTGGCATTTTT 59.226 39.130 18.18 0.00 44.55 1.94
536 541 0.606401 TTGGCAGTAGAGCAGTTGGC 60.606 55.000 0.00 0.00 45.30 4.52
777 788 4.141959 GGTGAATTCTCCTCTCCTCTTCTG 60.142 50.000 17.49 0.00 0.00 3.02
791 802 2.206223 GGTTAGGGGGAGGTGAATTCT 58.794 52.381 7.05 0.00 0.00 2.40
808 819 1.466858 TTTTGGGGGATGGAGAGGTT 58.533 50.000 0.00 0.00 0.00 3.50
817 828 1.304891 TTCGGAGGATTTTGGGGGAT 58.695 50.000 0.00 0.00 0.00 3.85
1022 1395 1.979831 GCGTAGACTCGAGAACCGCT 61.980 60.000 21.68 10.13 38.37 5.52
1336 1709 4.949238 TCATATGACCACAACCAAATCAGG 59.051 41.667 0.00 0.00 0.00 3.86
1395 1768 1.462616 GCCATGTGCAGATAACACCA 58.537 50.000 0.00 0.00 40.77 4.17
1472 1846 5.645056 TGCCCCAATCACTTATAGATCAA 57.355 39.130 0.00 0.00 0.00 2.57
1515 1889 8.784043 ACATGTCATTCTTAGGTACAAAGAAAC 58.216 33.333 20.19 16.31 43.96 2.78
1523 1897 9.559958 CAAATCAAACATGTCATTCTTAGGTAC 57.440 33.333 0.00 0.00 0.00 3.34
1567 1941 2.210116 CGGCGCCTCAAACTAACATAT 58.790 47.619 26.68 0.00 0.00 1.78
1700 2074 5.794687 TGTTTACCATGTTATCTTCGCAG 57.205 39.130 0.00 0.00 0.00 5.18
1710 2084 8.865090 TCATCCTTGTAATTTGTTTACCATGTT 58.135 29.630 0.00 0.00 39.63 2.71
1752 2126 8.813643 AGTGTTTGTAGTAGATAACAAGTCAC 57.186 34.615 12.90 12.90 39.57 3.67
1817 2191 2.890945 ACCCACGGAAATTCAGGAAAAG 59.109 45.455 0.00 0.00 0.00 2.27
1975 2351 4.277476 TCCCATTGTACAAGGCCTAATTG 58.723 43.478 14.66 2.75 0.00 2.32
1978 2354 2.241176 CCTCCCATTGTACAAGGCCTAA 59.759 50.000 14.66 0.00 0.00 2.69
1979 2355 1.843851 CCTCCCATTGTACAAGGCCTA 59.156 52.381 14.66 1.57 0.00 3.93
1980 2356 0.625849 CCTCCCATTGTACAAGGCCT 59.374 55.000 14.66 0.00 0.00 5.19
1981 2357 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.000 14.66 0.00 0.00 5.19
1982 2358 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
1983 2359 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
1984 2360 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
1985 2361 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
1986 2362 2.238646 CCTAAGCACCTCCCATTGTACA 59.761 50.000 0.00 0.00 0.00 2.90
1987 2363 2.421529 CCCTAAGCACCTCCCATTGTAC 60.422 54.545 0.00 0.00 0.00 2.90
1988 2364 1.843851 CCCTAAGCACCTCCCATTGTA 59.156 52.381 0.00 0.00 0.00 2.41
1989 2365 0.625849 CCCTAAGCACCTCCCATTGT 59.374 55.000 0.00 0.00 0.00 2.71
1990 2366 0.625849 ACCCTAAGCACCTCCCATTG 59.374 55.000 0.00 0.00 0.00 2.82
1991 2367 2.127708 CTACCCTAAGCACCTCCCATT 58.872 52.381 0.00 0.00 0.00 3.16
1992 2368 1.695989 CCTACCCTAAGCACCTCCCAT 60.696 57.143 0.00 0.00 0.00 4.00
1993 2369 0.326238 CCTACCCTAAGCACCTCCCA 60.326 60.000 0.00 0.00 0.00 4.37
1994 2370 0.326332 ACCTACCCTAAGCACCTCCC 60.326 60.000 0.00 0.00 0.00 4.30
1995 2371 0.831307 CACCTACCCTAAGCACCTCC 59.169 60.000 0.00 0.00 0.00 4.30
1996 2372 0.178301 GCACCTACCCTAAGCACCTC 59.822 60.000 0.00 0.00 0.00 3.85
1997 2373 0.252742 AGCACCTACCCTAAGCACCT 60.253 55.000 0.00 0.00 0.00 4.00
1998 2374 0.618981 AAGCACCTACCCTAAGCACC 59.381 55.000 0.00 0.00 0.00 5.01
1999 2375 2.764572 TCTAAGCACCTACCCTAAGCAC 59.235 50.000 0.00 0.00 0.00 4.40
2000 2376 3.031736 CTCTAAGCACCTACCCTAAGCA 58.968 50.000 0.00 0.00 0.00 3.91
2001 2377 2.365941 CCTCTAAGCACCTACCCTAAGC 59.634 54.545 0.00 0.00 0.00 3.09
2002 2378 3.912248 TCCTCTAAGCACCTACCCTAAG 58.088 50.000 0.00 0.00 0.00 2.18
2003 2379 4.341863 TTCCTCTAAGCACCTACCCTAA 57.658 45.455 0.00 0.00 0.00 2.69
2004 2380 4.554553 ATTCCTCTAAGCACCTACCCTA 57.445 45.455 0.00 0.00 0.00 3.53
2005 2381 2.942604 TTCCTCTAAGCACCTACCCT 57.057 50.000 0.00 0.00 0.00 4.34
2006 2382 5.625568 TTTATTCCTCTAAGCACCTACCC 57.374 43.478 0.00 0.00 0.00 3.69
2007 2383 6.827727 TGATTTATTCCTCTAAGCACCTACC 58.172 40.000 0.00 0.00 0.00 3.18
2008 2384 6.931840 CCTGATTTATTCCTCTAAGCACCTAC 59.068 42.308 0.00 0.00 0.00 3.18
2009 2385 6.464465 GCCTGATTTATTCCTCTAAGCACCTA 60.464 42.308 0.00 0.00 0.00 3.08
2010 2386 5.688766 GCCTGATTTATTCCTCTAAGCACCT 60.689 44.000 0.00 0.00 0.00 4.00
2011 2387 4.517075 GCCTGATTTATTCCTCTAAGCACC 59.483 45.833 0.00 0.00 0.00 5.01
2012 2388 5.372373 AGCCTGATTTATTCCTCTAAGCAC 58.628 41.667 0.00 0.00 0.00 4.40
2013 2389 5.636903 AGCCTGATTTATTCCTCTAAGCA 57.363 39.130 0.00 0.00 0.00 3.91
2014 2390 6.016693 GGAAAGCCTGATTTATTCCTCTAAGC 60.017 42.308 0.00 0.00 37.23 3.09
2015 2391 7.286313 AGGAAAGCCTGATTTATTCCTCTAAG 58.714 38.462 0.00 0.00 45.05 2.18
2016 2392 7.213178 AGGAAAGCCTGATTTATTCCTCTAA 57.787 36.000 0.00 0.00 45.05 2.10
2017 2393 6.831664 AGGAAAGCCTGATTTATTCCTCTA 57.168 37.500 0.00 0.00 45.05 2.43
2018 2394 5.723860 AGGAAAGCCTGATTTATTCCTCT 57.276 39.130 0.00 0.00 45.05 3.69
2019 2395 7.881775 TTAAGGAAAGCCTGATTTATTCCTC 57.118 36.000 5.88 0.00 46.92 3.71
2045 2421 2.418628 CCTGTACAAATAAGCACCGGTG 59.581 50.000 30.66 30.66 0.00 4.94
2046 2422 2.617021 CCCTGTACAAATAAGCACCGGT 60.617 50.000 0.00 0.00 0.00 5.28
2047 2423 2.014128 CCCTGTACAAATAAGCACCGG 58.986 52.381 0.00 0.00 0.00 5.28
2048 2424 2.706890 ACCCTGTACAAATAAGCACCG 58.293 47.619 0.00 0.00 0.00 4.94
2049 2425 4.874396 GTCTACCCTGTACAAATAAGCACC 59.126 45.833 0.00 0.00 0.00 5.01
2050 2426 4.565564 CGTCTACCCTGTACAAATAAGCAC 59.434 45.833 0.00 0.00 0.00 4.40
2051 2427 4.751060 CGTCTACCCTGTACAAATAAGCA 58.249 43.478 0.00 0.00 0.00 3.91
2052 2428 3.554731 GCGTCTACCCTGTACAAATAAGC 59.445 47.826 0.00 0.00 0.00 3.09
2053 2429 5.007385 AGCGTCTACCCTGTACAAATAAG 57.993 43.478 0.00 0.00 0.00 1.73
2054 2430 5.410355 AAGCGTCTACCCTGTACAAATAA 57.590 39.130 0.00 0.00 0.00 1.40
2055 2431 6.153340 AGTTAAGCGTCTACCCTGTACAAATA 59.847 38.462 0.00 0.00 0.00 1.40
2056 2432 3.975168 AAGCGTCTACCCTGTACAAAT 57.025 42.857 0.00 0.00 0.00 2.32
2057 2433 4.281688 AGTTAAGCGTCTACCCTGTACAAA 59.718 41.667 0.00 0.00 0.00 2.83
2058 2434 3.828451 AGTTAAGCGTCTACCCTGTACAA 59.172 43.478 0.00 0.00 0.00 2.41
2059 2435 3.424703 AGTTAAGCGTCTACCCTGTACA 58.575 45.455 0.00 0.00 0.00 2.90
2060 2436 5.567138 TTAGTTAAGCGTCTACCCTGTAC 57.433 43.478 0.00 0.00 0.00 2.90
2061 2437 5.824904 CTTAGTTAAGCGTCTACCCTGTA 57.175 43.478 0.00 0.00 0.00 2.74
2062 2438 4.715527 CTTAGTTAAGCGTCTACCCTGT 57.284 45.455 0.00 0.00 0.00 4.00
2073 2449 7.041235 TTCTATAGGAGAGACGCTTAGTTAAGC 60.041 40.741 12.72 12.72 44.08 3.09
2074 2450 7.966246 TCTATAGGAGAGACGCTTAGTTAAG 57.034 40.000 0.00 0.00 36.40 1.85
2075 2451 8.743085 TTTCTATAGGAGAGACGCTTAGTTAA 57.257 34.615 0.00 0.00 34.93 2.01
2076 2452 8.921353 ATTTCTATAGGAGAGACGCTTAGTTA 57.079 34.615 0.00 0.00 34.93 2.24
2077 2453 7.826918 ATTTCTATAGGAGAGACGCTTAGTT 57.173 36.000 0.00 0.00 34.93 2.24
2078 2454 8.556213 CTATTTCTATAGGAGAGACGCTTAGT 57.444 38.462 0.00 0.00 34.93 2.24
2105 2481 0.310854 GTTTTTCTGAGGCACCGGTG 59.689 55.000 30.66 30.66 0.00 4.94
2106 2482 0.182775 AGTTTTTCTGAGGCACCGGT 59.817 50.000 0.00 0.00 0.00 5.28
2107 2483 0.875059 GAGTTTTTCTGAGGCACCGG 59.125 55.000 0.00 0.00 0.00 5.28
2108 2484 0.512952 CGAGTTTTTCTGAGGCACCG 59.487 55.000 0.00 0.00 0.00 4.94
2109 2485 0.875059 CCGAGTTTTTCTGAGGCACC 59.125 55.000 0.00 0.00 0.00 5.01
2110 2486 1.594331 ACCGAGTTTTTCTGAGGCAC 58.406 50.000 0.00 0.00 0.00 5.01
2111 2487 2.341846 AACCGAGTTTTTCTGAGGCA 57.658 45.000 0.00 0.00 0.00 4.75
2112 2488 5.372547 AATAAACCGAGTTTTTCTGAGGC 57.627 39.130 7.22 0.00 37.01 4.70
2113 2489 8.282124 GAAAAATAAACCGAGTTTTTCTGAGG 57.718 34.615 12.66 0.00 43.37 3.86
2118 2494 9.240159 TGCTTAGAAAAATAAACCGAGTTTTTC 57.760 29.630 12.23 12.23 45.36 2.29
2119 2495 9.027129 GTGCTTAGAAAAATAAACCGAGTTTTT 57.973 29.630 7.22 0.00 37.01 1.94
2120 2496 7.650504 GGTGCTTAGAAAAATAAACCGAGTTTT 59.349 33.333 7.22 0.00 37.01 2.43
2121 2497 7.013942 AGGTGCTTAGAAAAATAAACCGAGTTT 59.986 33.333 7.11 7.11 39.24 2.66
2122 2498 6.489022 AGGTGCTTAGAAAAATAAACCGAGTT 59.511 34.615 0.00 0.00 0.00 3.01
2123 2499 6.002082 AGGTGCTTAGAAAAATAAACCGAGT 58.998 36.000 0.00 0.00 0.00 4.18
2124 2500 6.496338 AGGTGCTTAGAAAAATAAACCGAG 57.504 37.500 0.00 0.00 0.00 4.63
2125 2501 6.887626 AAGGTGCTTAGAAAAATAAACCGA 57.112 33.333 0.00 0.00 0.00 4.69
2126 2502 7.368059 AGAAAGGTGCTTAGAAAAATAAACCG 58.632 34.615 0.00 0.00 0.00 4.44
2129 2505 9.908152 GCTTAGAAAGGTGCTTAGAAAAATAAA 57.092 29.630 0.00 0.00 0.00 1.40
2130 2506 9.073475 TGCTTAGAAAGGTGCTTAGAAAAATAA 57.927 29.630 0.00 0.00 0.00 1.40
2131 2507 8.512138 GTGCTTAGAAAGGTGCTTAGAAAAATA 58.488 33.333 0.00 0.00 0.00 1.40
2132 2508 7.371159 GTGCTTAGAAAGGTGCTTAGAAAAAT 58.629 34.615 0.00 0.00 0.00 1.82
2133 2509 6.238925 GGTGCTTAGAAAGGTGCTTAGAAAAA 60.239 38.462 0.00 0.00 0.00 1.94
2134 2510 5.240844 GGTGCTTAGAAAGGTGCTTAGAAAA 59.759 40.000 0.00 0.00 0.00 2.29
2135 2511 4.760204 GGTGCTTAGAAAGGTGCTTAGAAA 59.240 41.667 0.00 0.00 0.00 2.52
2136 2512 4.041691 AGGTGCTTAGAAAGGTGCTTAGAA 59.958 41.667 0.00 0.00 0.00 2.10
2137 2513 3.583086 AGGTGCTTAGAAAGGTGCTTAGA 59.417 43.478 0.00 0.00 0.00 2.10
2138 2514 3.935828 GAGGTGCTTAGAAAGGTGCTTAG 59.064 47.826 0.00 0.00 0.00 2.18
2139 2515 3.307480 GGAGGTGCTTAGAAAGGTGCTTA 60.307 47.826 0.00 0.00 0.00 3.09
2140 2516 2.553247 GGAGGTGCTTAGAAAGGTGCTT 60.553 50.000 0.00 0.00 0.00 3.91
2141 2517 1.003696 GGAGGTGCTTAGAAAGGTGCT 59.996 52.381 0.00 0.00 0.00 4.40
2142 2518 1.454201 GGAGGTGCTTAGAAAGGTGC 58.546 55.000 0.00 0.00 0.00 5.01
2143 2519 1.351017 TGGGAGGTGCTTAGAAAGGTG 59.649 52.381 0.00 0.00 0.00 4.00
2144 2520 1.742308 TGGGAGGTGCTTAGAAAGGT 58.258 50.000 0.00 0.00 0.00 3.50
2145 2521 3.019564 CAATGGGAGGTGCTTAGAAAGG 58.980 50.000 0.00 0.00 0.00 3.11
2146 2522 3.690460 ACAATGGGAGGTGCTTAGAAAG 58.310 45.455 0.00 0.00 0.00 2.62
2147 2523 3.806949 ACAATGGGAGGTGCTTAGAAA 57.193 42.857 0.00 0.00 0.00 2.52
2148 2524 3.585289 TGTACAATGGGAGGTGCTTAGAA 59.415 43.478 0.00 0.00 0.00 2.10
2149 2525 3.178046 TGTACAATGGGAGGTGCTTAGA 58.822 45.455 0.00 0.00 0.00 2.10
2150 2526 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
2151 2527 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
2152 2528 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
2153 2529 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
2154 2530 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
2155 2531 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
2156 2532 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
2157 2533 0.625849 AGGCCTTGTACAATGGGAGG 59.374 55.000 16.08 11.34 0.00 4.30
2158 2534 2.514458 AAGGCCTTGTACAATGGGAG 57.486 50.000 19.73 1.65 0.00 4.30
2159 2535 2.916934 AGTAAGGCCTTGTACAATGGGA 59.083 45.455 28.77 0.00 0.00 4.37
2160 2536 3.016736 CAGTAAGGCCTTGTACAATGGG 58.983 50.000 28.77 14.91 0.00 4.00
2161 2537 3.016736 CCAGTAAGGCCTTGTACAATGG 58.983 50.000 28.77 21.63 0.00 3.16
2162 2538 3.440173 CACCAGTAAGGCCTTGTACAATG 59.560 47.826 28.77 16.67 43.14 2.82
2163 2539 3.073946 ACACCAGTAAGGCCTTGTACAAT 59.926 43.478 28.77 3.88 43.14 2.71
2164 2540 2.440253 ACACCAGTAAGGCCTTGTACAA 59.560 45.455 28.77 8.28 43.14 2.41
2165 2541 2.051692 ACACCAGTAAGGCCTTGTACA 58.948 47.619 28.77 4.66 43.14 2.90
2166 2542 2.853235 ACACCAGTAAGGCCTTGTAC 57.147 50.000 28.77 18.91 43.14 2.90
2167 2543 3.513517 ACTACACCAGTAAGGCCTTGTA 58.486 45.455 28.77 18.96 43.14 2.41
2168 2544 2.335933 ACTACACCAGTAAGGCCTTGT 58.664 47.619 28.77 18.85 43.14 3.16
2169 2545 3.679083 GCTACTACACCAGTAAGGCCTTG 60.679 52.174 28.77 13.48 43.14 3.61
2170 2546 2.500504 GCTACTACACCAGTAAGGCCTT 59.499 50.000 24.18 24.18 43.14 4.35
2171 2547 2.108970 GCTACTACACCAGTAAGGCCT 58.891 52.381 0.00 0.00 43.14 5.19
2172 2548 2.108970 AGCTACTACACCAGTAAGGCC 58.891 52.381 0.00 0.00 43.14 5.19
2173 2549 4.796618 GCATAGCTACTACACCAGTAAGGC 60.797 50.000 0.00 0.00 43.14 4.35
2174 2550 4.585162 AGCATAGCTACTACACCAGTAAGG 59.415 45.833 0.00 0.00 39.28 2.69
2175 2551 5.776173 AGCATAGCTACTACACCAGTAAG 57.224 43.478 0.00 0.00 39.28 2.34
2285 2668 3.062504 GCAACACTTGGAAGCTTTTGTTG 59.937 43.478 21.91 21.91 44.25 3.33
2323 2706 2.163211 GGAAACTTGGAATCAGAGCTGC 59.837 50.000 0.00 0.00 0.00 5.25
2368 2751 2.615869 CCAGCTACTCTCTGCAGAAAC 58.384 52.381 18.85 3.71 0.00 2.78
2674 3057 2.600731 CAACTTAGTCTCGTGCAGAGG 58.399 52.381 11.63 0.00 46.82 3.69
2677 3060 2.440539 ACCAACTTAGTCTCGTGCAG 57.559 50.000 0.00 0.00 0.00 4.41
2815 3437 6.990349 GGCCATGCTACTTAGTCAAATACTTA 59.010 38.462 0.00 0.00 39.80 2.24
2893 3515 5.061853 GTGACAAGATGAGCCATATGTCAT 58.938 41.667 23.44 8.21 44.56 3.06
3475 4097 2.031508 GCCGAATTCTCGTCCAAACAAA 60.032 45.455 3.52 0.00 43.87 2.83
3862 4484 5.595952 GGATAAAGGATGCAATGGAGTTCTT 59.404 40.000 0.00 0.00 0.00 2.52
4108 4730 0.987294 CATGAGACCTCCCCACACTT 59.013 55.000 0.00 0.00 0.00 3.16
4143 4765 6.520272 ACGATAGGGAATTCATCTTCTTGAG 58.480 40.000 7.93 0.00 43.77 3.02
4252 4874 3.181526 GCTGAGTTTAGCCAGGCAT 57.818 52.632 15.80 0.95 37.73 4.40
4273 4895 0.659957 CAGCCAGCGGATTTTCTAGC 59.340 55.000 0.00 0.00 0.00 3.42
4870 5492 7.116948 CAGAGACTACCAAAAAGTATCACACAG 59.883 40.741 1.29 0.00 37.60 3.66
5000 5622 6.867662 AATGCCTTATATTTTGAGACGGAG 57.132 37.500 0.00 0.00 0.00 4.63
5052 5674 5.745227 TCCCTCTGTATCAAAATGGAAGAC 58.255 41.667 0.00 0.00 0.00 3.01
5057 5679 6.595682 ACATACTCCCTCTGTATCAAAATGG 58.404 40.000 0.00 0.00 0.00 3.16
5058 5680 7.467811 GCAACATACTCCCTCTGTATCAAAATG 60.468 40.741 0.00 0.00 0.00 2.32
5063 5685 4.030216 TGCAACATACTCCCTCTGTATCA 58.970 43.478 0.00 0.00 0.00 2.15
5064 5686 4.100189 ACTGCAACATACTCCCTCTGTATC 59.900 45.833 0.00 0.00 0.00 2.24
5065 5687 4.033709 ACTGCAACATACTCCCTCTGTAT 58.966 43.478 0.00 0.00 0.00 2.29
5066 5688 3.441101 ACTGCAACATACTCCCTCTGTA 58.559 45.455 0.00 0.00 0.00 2.74
5067 5689 2.234908 GACTGCAACATACTCCCTCTGT 59.765 50.000 0.00 0.00 0.00 3.41
5068 5690 2.419297 GGACTGCAACATACTCCCTCTG 60.419 54.545 0.00 0.00 0.00 3.35
5069 5691 1.834263 GGACTGCAACATACTCCCTCT 59.166 52.381 0.00 0.00 0.00 3.69
5070 5692 1.555075 TGGACTGCAACATACTCCCTC 59.445 52.381 0.00 0.00 0.00 4.30
5071 5693 1.656587 TGGACTGCAACATACTCCCT 58.343 50.000 0.00 0.00 0.00 4.20
5072 5694 2.717639 ATGGACTGCAACATACTCCC 57.282 50.000 0.00 0.00 0.00 4.30
5073 5695 4.512944 CACATATGGACTGCAACATACTCC 59.487 45.833 7.80 0.00 32.87 3.85
5074 5696 4.024556 GCACATATGGACTGCAACATACTC 60.025 45.833 7.80 0.00 32.87 2.59
5075 5697 3.879295 GCACATATGGACTGCAACATACT 59.121 43.478 7.80 0.00 32.87 2.12
5076 5698 3.003689 GGCACATATGGACTGCAACATAC 59.996 47.826 16.08 0.00 32.87 2.39
5077 5699 3.213506 GGCACATATGGACTGCAACATA 58.786 45.455 16.08 7.58 34.40 2.29
5078 5700 2.026641 GGCACATATGGACTGCAACAT 58.973 47.619 16.08 4.01 32.20 2.71
5079 5701 1.271817 TGGCACATATGGACTGCAACA 60.272 47.619 16.08 5.68 32.20 3.33
5080 5702 1.462616 TGGCACATATGGACTGCAAC 58.537 50.000 16.08 3.55 32.20 4.17
5081 5703 2.212812 TTGGCACATATGGACTGCAA 57.787 45.000 16.08 4.74 39.30 4.08
5082 5704 2.212812 TTTGGCACATATGGACTGCA 57.787 45.000 16.08 0.00 39.30 4.41
5083 5705 2.754552 TCTTTTGGCACATATGGACTGC 59.245 45.455 7.80 7.91 39.30 4.40
5084 5706 5.389859 TTTCTTTTGGCACATATGGACTG 57.610 39.130 7.80 0.00 39.30 3.51
5085 5707 6.418057 TTTTTCTTTTGGCACATATGGACT 57.582 33.333 7.80 0.00 39.30 3.85
5188 5814 6.737622 GCATGATCCATTGTTAGTGATGCATT 60.738 38.462 0.00 0.00 35.00 3.56
5224 5850 3.188460 ACATCGCAACCATTGTTAGTGAC 59.812 43.478 0.00 0.00 32.09 3.67
5242 5868 8.930760 GCTGACTCAATCACCTATAATTACATC 58.069 37.037 0.00 0.00 32.37 3.06
5260 5886 1.202521 TCTTGCTGAAACGCTGACTCA 60.203 47.619 0.00 0.00 0.00 3.41
5464 6094 2.037136 GCAAGCCATCGACTGCTGT 61.037 57.895 10.94 0.00 38.00 4.40
5479 6109 1.202989 TGTTATCACCAGGCAAGGCAA 60.203 47.619 0.00 0.00 0.00 4.52
5480 6110 0.403655 TGTTATCACCAGGCAAGGCA 59.596 50.000 0.00 0.00 0.00 4.75
5481 6111 1.098050 CTGTTATCACCAGGCAAGGC 58.902 55.000 0.00 0.00 0.00 4.35
5482 6112 1.098050 GCTGTTATCACCAGGCAAGG 58.902 55.000 0.00 0.00 0.00 3.61
5483 6113 1.825090 TGCTGTTATCACCAGGCAAG 58.175 50.000 0.00 0.00 0.00 4.01
5484 6114 2.161855 CTTGCTGTTATCACCAGGCAA 58.838 47.619 0.00 0.00 0.00 4.52
5511 6141 0.669318 GTGAACAAGATGGCCGACGA 60.669 55.000 0.00 0.00 0.00 4.20
5513 6143 1.635663 CGGTGAACAAGATGGCCGAC 61.636 60.000 0.00 0.00 41.45 4.79
5580 6213 3.389002 ACATGATGATGGACTCGAATGGA 59.611 43.478 0.00 0.00 33.39 3.41
5598 6231 9.362539 ACGTACAGTTCCTTAATTAGTTACATG 57.637 33.333 0.00 0.00 0.00 3.21
5600 6233 9.840427 GTACGTACAGTTCCTTAATTAGTTACA 57.160 33.333 20.67 0.00 0.00 2.41
5799 6434 2.002586 GTATGTTCAGCACATGCGTCT 58.997 47.619 0.00 0.00 46.37 4.18
5823 6458 1.211457 ACTGAGGATGACCAATCAGGC 59.789 52.381 6.07 0.00 40.54 4.85
5970 6616 2.810458 CGCAAATTTGGGCCGCAG 60.810 61.111 20.60 0.00 34.31 5.18
6315 7030 4.351054 CTGCCTTTGCCGGGGAGT 62.351 66.667 2.18 0.00 37.49 3.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.