Multiple sequence alignment - TraesCS7B01G149700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G149700 chr7B 100.000 5309 0 0 1 5309 198626516 198621208 0.000000e+00 9804.0
1 TraesCS7B01G149700 chr7B 88.618 492 52 4 3534 4023 198622800 198622311 3.540000e-166 595.0
2 TraesCS7B01G149700 chr7B 88.641 493 50 6 3717 4206 198622983 198622494 3.540000e-166 595.0
3 TraesCS7B01G149700 chr7D 98.050 2000 38 1 2207 4206 226705912 226703914 0.000000e+00 3476.0
4 TraesCS7B01G149700 chr7D 91.388 1974 86 17 307 2214 226708336 226706381 0.000000e+00 2627.0
5 TraesCS7B01G149700 chr7D 93.851 1057 62 3 3534 4589 226704403 226703349 0.000000e+00 1589.0
6 TraesCS7B01G149700 chr7D 97.276 624 17 0 4686 5309 226703347 226702724 0.000000e+00 1059.0
7 TraesCS7B01G149700 chr7D 88.618 492 52 4 3717 4206 226704586 226704097 3.540000e-166 595.0
8 TraesCS7B01G149700 chr7D 90.802 424 39 0 3600 4023 226704154 226703731 7.720000e-158 568.0
9 TraesCS7B01G149700 chr7D 96.040 101 4 0 4586 4686 207934756 207934856 1.180000e-36 165.0
10 TraesCS7B01G149700 chr7D 95.062 81 3 1 239 319 227164800 227164721 5.580000e-25 126.0
11 TraesCS7B01G149700 chr7A 86.844 3048 251 74 852 3830 238881947 238878981 0.000000e+00 3269.0
12 TraesCS7B01G149700 chr7A 95.527 626 25 2 4685 5309 238877732 238877109 0.000000e+00 998.0
13 TraesCS7B01G149700 chr7A 86.742 709 38 22 157 848 238883139 238882470 0.000000e+00 737.0
14 TraesCS7B01G149700 chr7A 89.674 368 33 3 4078 4445 238878094 238877732 1.040000e-126 464.0
15 TraesCS7B01G149700 chr7A 87.117 326 42 0 3966 4291 238879211 238878886 2.340000e-98 370.0
16 TraesCS7B01G149700 chr7A 89.401 217 23 0 4075 4291 238878475 238878259 1.880000e-69 274.0
17 TraesCS7B01G149700 chr7A 88.479 217 25 0 4075 4291 238878346 238878130 4.080000e-66 263.0
18 TraesCS7B01G149700 chr7A 90.323 186 18 0 4075 4260 238878973 238878788 1.480000e-60 244.0
19 TraesCS7B01G149700 chr7A 90.625 128 12 0 3895 4022 238878094 238877967 2.540000e-38 171.0
20 TraesCS7B01G149700 chr7A 90.164 122 12 0 3892 4013 238878973 238878852 5.500000e-35 159.0
21 TraesCS7B01G149700 chr7A 86.066 122 17 0 3892 4013 238878346 238878225 1.200000e-26 132.0
22 TraesCS7B01G149700 chr2B 98.400 125 2 0 1 125 27587175 27587299 2.490000e-53 220.0
23 TraesCS7B01G149700 chr2B 91.964 112 8 1 4586 4697 575876625 575876515 7.120000e-34 156.0
24 TraesCS7B01G149700 chr2B 87.963 108 13 0 4440 4547 156390869 156390762 1.550000e-25 128.0
25 TraesCS7B01G149700 chr2B 81.522 92 15 1 4444 4533 505812292 505812201 2.050000e-09 75.0
26 TraesCS7B01G149700 chr5B 97.619 126 3 0 1 126 501964094 501964219 3.220000e-52 217.0
27 TraesCS7B01G149700 chr5B 82.243 107 17 2 4444 4549 440275943 440275838 2.040000e-14 91.6
28 TraesCS7B01G149700 chr5A 97.619 126 3 0 1 126 437290957 437291082 3.220000e-52 217.0
29 TraesCS7B01G149700 chr5A 97.638 127 2 1 1 126 512944690 512944816 3.220000e-52 217.0
30 TraesCS7B01G149700 chr4B 97.619 126 3 0 1 126 150734668 150734793 3.220000e-52 217.0
31 TraesCS7B01G149700 chr4B 87.838 74 5 4 4460 4531 50731902 50731973 3.410000e-12 84.2
32 TraesCS7B01G149700 chr3B 97.619 126 3 0 1 126 433534680 433534555 3.220000e-52 217.0
33 TraesCS7B01G149700 chr3B 97.619 126 3 0 1 126 438378573 438378448 3.220000e-52 217.0
34 TraesCS7B01G149700 chr3B 96.923 130 3 1 1 129 676270494 676270623 3.220000e-52 217.0
35 TraesCS7B01G149700 chr3B 93.458 107 7 0 4582 4688 225173861 225173967 5.500000e-35 159.0
36 TraesCS7B01G149700 chr3A 97.619 126 3 0 1 126 646678725 646678600 3.220000e-52 217.0
37 TraesCS7B01G149700 chr2A 97.030 101 3 0 4589 4689 681093401 681093501 2.540000e-38 171.0
38 TraesCS7B01G149700 chr2A 90.756 119 10 1 4581 4698 775020300 775020182 1.980000e-34 158.0
39 TraesCS7B01G149700 chr5D 97.000 100 3 0 4589 4688 367482366 367482267 9.140000e-38 169.0
40 TraesCS7B01G149700 chr1D 93.578 109 5 2 4581 4688 422309010 422309117 1.530000e-35 161.0
41 TraesCS7B01G149700 chr1B 94.286 105 6 0 4582 4686 632006847 632006743 1.530000e-35 161.0
42 TraesCS7B01G149700 chr1B 95.876 97 4 0 4590 4686 61488856 61488952 1.980000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G149700 chr7B 198621208 198626516 5308 True 9804.000000 9804 100.000000 1 5309 1 chr7B.!!$R1 5308
1 TraesCS7B01G149700 chr7B 198622311 198622983 672 True 595.000000 595 88.629500 3534 4206 2 chr7B.!!$R2 672
2 TraesCS7B01G149700 chr7D 226702724 226708336 5612 True 1652.333333 3476 93.330833 307 5309 6 chr7D.!!$R2 5002
3 TraesCS7B01G149700 chr7A 238877109 238883139 6030 True 643.727273 3269 89.178364 157 5309 11 chr7A.!!$R1 5152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.111061 TTGCTCATTGTGACCAGCCT 59.889 50.000 0.00 0.00 0.00 4.58 F
123 124 0.111061 TGCTCATTGTGACCAGCCTT 59.889 50.000 0.00 0.00 0.00 4.35 F
228 229 0.249911 ACCTGAGACCAAGCGTGTTC 60.250 55.000 0.00 0.00 0.00 3.18 F
1482 2065 0.377554 ACGACGATACAAGAGCTCCG 59.622 55.000 10.93 8.22 0.00 4.63 F
1649 2232 0.751277 CACATCCCCTTTGCCGCATA 60.751 55.000 0.00 0.00 0.00 3.14 F
1757 2340 1.880340 GCGAGCGAGGATGAACCAG 60.880 63.158 0.00 0.00 42.04 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 2259 0.669318 TTAACGGGCTGTCTCGCAAG 60.669 55.000 0.0 0.0 0.00 4.01 R
2137 2723 6.643770 GCATAGAACAAATTAATGAGCCCATG 59.356 38.462 0.0 0.0 32.36 3.66 R
2662 3748 4.037222 TGGGATAGGAAGTGTCAAGCATA 58.963 43.478 0.0 0.0 0.00 3.14 R
3093 4204 1.769465 TGTACAAGCCCCACAGTGTAA 59.231 47.619 0.0 0.0 0.00 2.41 R
3474 4590 2.417097 GCCTGTTTGTGCCGCTTT 59.583 55.556 0.0 0.0 0.00 3.51 R
4420 6412 2.689034 AGTCTACCCAGCCCAGGC 60.689 66.667 0.0 0.0 42.33 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.353431 ACCTAATAAATACATCATTGCATGACA 57.647 29.630 0.00 0.00 43.01 3.58
29 30 9.616634 CCTAATAAATACATCATTGCATGACAC 57.383 33.333 0.00 0.00 43.01 3.67
33 34 7.628769 AAATACATCATTGCATGACACTACA 57.371 32.000 0.00 0.00 43.01 2.74
34 35 7.812690 AATACATCATTGCATGACACTACAT 57.187 32.000 0.00 0.00 43.01 2.29
35 36 8.907222 AATACATCATTGCATGACACTACATA 57.093 30.769 0.00 0.00 43.01 2.29
36 37 6.856135 ACATCATTGCATGACACTACATAG 57.144 37.500 0.00 0.00 43.01 2.23
37 38 6.585416 ACATCATTGCATGACACTACATAGA 58.415 36.000 0.00 0.00 43.01 1.98
38 39 7.222161 ACATCATTGCATGACACTACATAGAT 58.778 34.615 0.00 0.00 43.01 1.98
39 40 7.172703 ACATCATTGCATGACACTACATAGATG 59.827 37.037 0.00 0.00 43.01 2.90
40 41 6.585416 TCATTGCATGACACTACATAGATGT 58.415 36.000 0.00 0.08 38.37 3.06
41 42 7.049754 TCATTGCATGACACTACATAGATGTT 58.950 34.615 0.00 0.00 36.98 2.71
42 43 7.553760 TCATTGCATGACACTACATAGATGTTT 59.446 33.333 0.00 0.00 36.98 2.83
43 44 6.908870 TGCATGACACTACATAGATGTTTC 57.091 37.500 0.00 0.00 41.97 2.78
44 45 6.643388 TGCATGACACTACATAGATGTTTCT 58.357 36.000 0.00 0.00 41.97 2.52
45 46 7.781056 TGCATGACACTACATAGATGTTTCTA 58.219 34.615 0.00 0.00 41.97 2.10
46 47 7.706607 TGCATGACACTACATAGATGTTTCTAC 59.293 37.037 0.00 0.00 41.97 2.59
47 48 7.169982 GCATGACACTACATAGATGTTTCTACC 59.830 40.741 0.00 0.00 41.97 3.18
48 49 7.108841 TGACACTACATAGATGTTTCTACCC 57.891 40.000 0.00 0.00 41.97 3.69
49 50 6.666113 TGACACTACATAGATGTTTCTACCCA 59.334 38.462 0.00 0.00 41.97 4.51
50 51 6.875076 ACACTACATAGATGTTTCTACCCAC 58.125 40.000 0.00 0.00 41.97 4.61
51 52 6.668283 ACACTACATAGATGTTTCTACCCACT 59.332 38.462 0.00 0.00 41.97 4.00
52 53 7.837689 ACACTACATAGATGTTTCTACCCACTA 59.162 37.037 0.00 0.00 41.97 2.74
53 54 8.861086 CACTACATAGATGTTTCTACCCACTAT 58.139 37.037 0.00 0.00 41.97 2.12
54 55 8.861086 ACTACATAGATGTTTCTACCCACTATG 58.139 37.037 0.00 0.00 41.97 2.23
55 56 7.067496 ACATAGATGTTTCTACCCACTATGG 57.933 40.000 0.81 0.00 37.90 2.74
56 57 6.844388 ACATAGATGTTTCTACCCACTATGGA 59.156 38.462 0.81 0.00 37.45 3.41
57 58 5.878406 AGATGTTTCTACCCACTATGGAG 57.122 43.478 0.00 0.00 40.96 3.86
58 59 4.656112 AGATGTTTCTACCCACTATGGAGG 59.344 45.833 0.00 0.00 40.96 4.30
59 60 3.798515 TGTTTCTACCCACTATGGAGGT 58.201 45.455 0.00 1.66 40.96 3.85
60 61 4.950361 TGTTTCTACCCACTATGGAGGTA 58.050 43.478 0.00 3.53 40.96 3.08
66 67 4.341863 ACCCACTATGGAGGTAGTAACA 57.658 45.455 0.00 0.00 40.96 2.41
67 68 4.892198 ACCCACTATGGAGGTAGTAACAT 58.108 43.478 0.00 0.00 40.96 2.71
68 69 6.034442 ACCCACTATGGAGGTAGTAACATA 57.966 41.667 0.00 0.00 40.96 2.29
69 70 6.075984 ACCCACTATGGAGGTAGTAACATAG 58.924 44.000 8.52 8.52 45.07 2.23
75 76 8.795842 CTATGGAGGTAGTAACATAGTCTAGG 57.204 42.308 0.00 0.00 38.48 3.02
76 77 6.836714 TGGAGGTAGTAACATAGTCTAGGA 57.163 41.667 0.00 0.00 0.00 2.94
77 78 7.217028 TGGAGGTAGTAACATAGTCTAGGAA 57.783 40.000 0.00 0.00 0.00 3.36
78 79 7.645942 TGGAGGTAGTAACATAGTCTAGGAAA 58.354 38.462 0.00 0.00 0.00 3.13
79 80 7.778853 TGGAGGTAGTAACATAGTCTAGGAAAG 59.221 40.741 0.00 0.00 0.00 2.62
80 81 7.779326 GGAGGTAGTAACATAGTCTAGGAAAGT 59.221 40.741 0.00 0.00 0.00 2.66
81 82 8.522542 AGGTAGTAACATAGTCTAGGAAAGTG 57.477 38.462 0.00 0.00 0.00 3.16
82 83 8.114743 AGGTAGTAACATAGTCTAGGAAAGTGT 58.885 37.037 0.00 0.00 0.00 3.55
83 84 8.189460 GGTAGTAACATAGTCTAGGAAAGTGTG 58.811 40.741 0.00 0.00 0.00 3.82
84 85 8.954350 GTAGTAACATAGTCTAGGAAAGTGTGA 58.046 37.037 0.00 0.00 0.00 3.58
85 86 8.418597 AGTAACATAGTCTAGGAAAGTGTGAA 57.581 34.615 0.00 0.00 0.00 3.18
86 87 8.524487 AGTAACATAGTCTAGGAAAGTGTGAAG 58.476 37.037 0.00 0.00 0.00 3.02
87 88 6.919775 ACATAGTCTAGGAAAGTGTGAAGT 57.080 37.500 0.00 0.00 0.00 3.01
88 89 7.304497 ACATAGTCTAGGAAAGTGTGAAGTT 57.696 36.000 0.00 0.00 0.00 2.66
89 90 8.418597 ACATAGTCTAGGAAAGTGTGAAGTTA 57.581 34.615 0.00 0.00 0.00 2.24
90 91 8.305317 ACATAGTCTAGGAAAGTGTGAAGTTAC 58.695 37.037 0.00 0.00 0.00 2.50
91 92 6.980416 AGTCTAGGAAAGTGTGAAGTTACT 57.020 37.500 0.00 0.00 0.00 2.24
92 93 9.750783 ATAGTCTAGGAAAGTGTGAAGTTACTA 57.249 33.333 0.00 0.00 0.00 1.82
93 94 8.113173 AGTCTAGGAAAGTGTGAAGTTACTAG 57.887 38.462 0.00 0.00 0.00 2.57
94 95 6.807720 GTCTAGGAAAGTGTGAAGTTACTAGC 59.192 42.308 0.00 0.00 0.00 3.42
95 96 5.810080 AGGAAAGTGTGAAGTTACTAGCT 57.190 39.130 0.00 0.00 0.00 3.32
96 97 6.176014 AGGAAAGTGTGAAGTTACTAGCTT 57.824 37.500 0.00 0.00 0.00 3.74
97 98 7.299246 AGGAAAGTGTGAAGTTACTAGCTTA 57.701 36.000 0.00 0.00 0.00 3.09
98 99 7.908453 AGGAAAGTGTGAAGTTACTAGCTTAT 58.092 34.615 0.00 0.00 0.00 1.73
99 100 7.819900 AGGAAAGTGTGAAGTTACTAGCTTATG 59.180 37.037 0.00 0.00 0.00 1.90
100 101 7.603024 GGAAAGTGTGAAGTTACTAGCTTATGT 59.397 37.037 0.00 0.00 0.00 2.29
101 102 8.904099 AAAGTGTGAAGTTACTAGCTTATGTT 57.096 30.769 0.00 0.00 0.00 2.71
102 103 8.535690 AAGTGTGAAGTTACTAGCTTATGTTC 57.464 34.615 0.00 0.00 0.00 3.18
103 104 7.897864 AGTGTGAAGTTACTAGCTTATGTTCT 58.102 34.615 0.00 0.00 0.00 3.01
104 105 8.368668 AGTGTGAAGTTACTAGCTTATGTTCTT 58.631 33.333 0.00 0.00 0.00 2.52
105 106 8.436200 GTGTGAAGTTACTAGCTTATGTTCTTG 58.564 37.037 0.00 0.00 0.00 3.02
106 107 7.117812 TGTGAAGTTACTAGCTTATGTTCTTGC 59.882 37.037 0.00 0.00 0.00 4.01
107 108 7.332182 GTGAAGTTACTAGCTTATGTTCTTGCT 59.668 37.037 0.00 0.00 39.30 3.91
108 109 7.545965 TGAAGTTACTAGCTTATGTTCTTGCTC 59.454 37.037 0.00 0.00 37.02 4.26
109 110 6.936279 AGTTACTAGCTTATGTTCTTGCTCA 58.064 36.000 0.00 0.00 37.02 4.26
110 111 7.560368 AGTTACTAGCTTATGTTCTTGCTCAT 58.440 34.615 0.00 0.00 37.02 2.90
111 112 8.043710 AGTTACTAGCTTATGTTCTTGCTCATT 58.956 33.333 0.00 0.00 37.02 2.57
112 113 6.674694 ACTAGCTTATGTTCTTGCTCATTG 57.325 37.500 0.00 0.00 37.02 2.82
113 114 6.176183 ACTAGCTTATGTTCTTGCTCATTGT 58.824 36.000 0.00 0.00 37.02 2.71
114 115 5.306532 AGCTTATGTTCTTGCTCATTGTG 57.693 39.130 0.00 0.00 0.00 3.33
115 116 5.005740 AGCTTATGTTCTTGCTCATTGTGA 58.994 37.500 0.00 0.00 0.00 3.58
116 117 5.091431 GCTTATGTTCTTGCTCATTGTGAC 58.909 41.667 0.00 0.00 0.00 3.67
117 118 5.627499 TTATGTTCTTGCTCATTGTGACC 57.373 39.130 0.00 0.00 0.00 4.02
118 119 2.929641 TGTTCTTGCTCATTGTGACCA 58.070 42.857 0.00 0.00 0.00 4.02
119 120 2.880268 TGTTCTTGCTCATTGTGACCAG 59.120 45.455 0.00 0.00 0.00 4.00
120 121 1.527034 TCTTGCTCATTGTGACCAGC 58.473 50.000 0.00 0.00 0.00 4.85
121 122 0.524862 CTTGCTCATTGTGACCAGCC 59.475 55.000 0.00 0.00 0.00 4.85
122 123 0.111061 TTGCTCATTGTGACCAGCCT 59.889 50.000 0.00 0.00 0.00 4.58
123 124 0.111061 TGCTCATTGTGACCAGCCTT 59.889 50.000 0.00 0.00 0.00 4.35
124 125 1.350684 TGCTCATTGTGACCAGCCTTA 59.649 47.619 0.00 0.00 0.00 2.69
125 126 2.012673 GCTCATTGTGACCAGCCTTAG 58.987 52.381 0.00 0.00 0.00 2.18
126 127 2.355108 GCTCATTGTGACCAGCCTTAGA 60.355 50.000 0.00 0.00 0.00 2.10
127 128 3.869912 GCTCATTGTGACCAGCCTTAGAA 60.870 47.826 0.00 0.00 0.00 2.10
128 129 4.326826 CTCATTGTGACCAGCCTTAGAAA 58.673 43.478 0.00 0.00 0.00 2.52
129 130 4.326826 TCATTGTGACCAGCCTTAGAAAG 58.673 43.478 0.00 0.00 0.00 2.62
130 131 3.857157 TTGTGACCAGCCTTAGAAAGT 57.143 42.857 0.00 0.00 0.00 2.66
131 132 3.402628 TGTGACCAGCCTTAGAAAGTC 57.597 47.619 0.00 0.00 0.00 3.01
132 133 2.038557 TGTGACCAGCCTTAGAAAGTCC 59.961 50.000 0.00 0.00 0.00 3.85
133 134 1.628846 TGACCAGCCTTAGAAAGTCCC 59.371 52.381 0.00 0.00 0.00 4.46
134 135 0.992695 ACCAGCCTTAGAAAGTCCCC 59.007 55.000 0.00 0.00 0.00 4.81
135 136 1.290134 CCAGCCTTAGAAAGTCCCCT 58.710 55.000 0.00 0.00 0.00 4.79
136 137 1.210722 CCAGCCTTAGAAAGTCCCCTC 59.789 57.143 0.00 0.00 0.00 4.30
137 138 2.192263 CAGCCTTAGAAAGTCCCCTCT 58.808 52.381 0.00 0.00 0.00 3.69
138 139 2.169561 CAGCCTTAGAAAGTCCCCTCTC 59.830 54.545 0.00 0.00 0.00 3.20
139 140 2.188817 GCCTTAGAAAGTCCCCTCTCA 58.811 52.381 0.00 0.00 0.00 3.27
140 141 2.093394 GCCTTAGAAAGTCCCCTCTCAC 60.093 54.545 0.00 0.00 0.00 3.51
141 142 3.445987 CCTTAGAAAGTCCCCTCTCACT 58.554 50.000 0.00 0.00 0.00 3.41
142 143 3.449377 CCTTAGAAAGTCCCCTCTCACTC 59.551 52.174 0.00 0.00 0.00 3.51
143 144 1.551452 AGAAAGTCCCCTCTCACTCG 58.449 55.000 0.00 0.00 0.00 4.18
144 145 1.203075 AGAAAGTCCCCTCTCACTCGT 60.203 52.381 0.00 0.00 0.00 4.18
145 146 2.041350 AGAAAGTCCCCTCTCACTCGTA 59.959 50.000 0.00 0.00 0.00 3.43
146 147 2.830651 AAGTCCCCTCTCACTCGTAT 57.169 50.000 0.00 0.00 0.00 3.06
147 148 3.947612 AAGTCCCCTCTCACTCGTATA 57.052 47.619 0.00 0.00 0.00 1.47
148 149 3.211718 AGTCCCCTCTCACTCGTATAC 57.788 52.381 0.00 0.00 0.00 1.47
149 150 1.872313 GTCCCCTCTCACTCGTATACG 59.128 57.143 19.23 19.23 41.45 3.06
150 151 0.592148 CCCCTCTCACTCGTATACGC 59.408 60.000 20.42 0.00 39.60 4.42
151 152 1.306148 CCCTCTCACTCGTATACGCA 58.694 55.000 20.42 8.59 39.60 5.24
152 153 1.002684 CCCTCTCACTCGTATACGCAC 60.003 57.143 20.42 0.00 39.60 5.34
153 154 1.332993 CCTCTCACTCGTATACGCACG 60.333 57.143 20.42 12.85 43.28 5.34
154 155 0.654160 TCTCACTCGTATACGCACGG 59.346 55.000 20.42 11.94 42.19 4.94
155 156 0.928908 CTCACTCGTATACGCACGGC 60.929 60.000 20.42 0.00 42.19 5.68
166 167 2.625823 CGCACGGCCTCCAACAATT 61.626 57.895 0.00 0.00 0.00 2.32
178 179 2.550606 TCCAACAATTACGCCAAGACAC 59.449 45.455 0.00 0.00 0.00 3.67
181 182 3.619233 ACAATTACGCCAAGACACAAC 57.381 42.857 0.00 0.00 0.00 3.32
184 185 4.757657 ACAATTACGCCAAGACACAACATA 59.242 37.500 0.00 0.00 0.00 2.29
187 188 3.052455 ACGCCAAGACACAACATATGA 57.948 42.857 10.38 0.00 0.00 2.15
192 193 5.220912 CGCCAAGACACAACATATGATTCAT 60.221 40.000 10.38 4.28 0.00 2.57
228 229 0.249911 ACCTGAGACCAAGCGTGTTC 60.250 55.000 0.00 0.00 0.00 3.18
234 235 3.380004 TGAGACCAAGCGTGTTCAAAAAT 59.620 39.130 0.00 0.00 0.00 1.82
235 236 4.576873 TGAGACCAAGCGTGTTCAAAAATA 59.423 37.500 0.00 0.00 0.00 1.40
236 237 4.855531 AGACCAAGCGTGTTCAAAAATAC 58.144 39.130 0.00 0.00 0.00 1.89
237 238 4.336993 AGACCAAGCGTGTTCAAAAATACA 59.663 37.500 0.00 0.00 0.00 2.29
238 239 5.009610 AGACCAAGCGTGTTCAAAAATACAT 59.990 36.000 0.00 0.00 0.00 2.29
239 240 5.219633 ACCAAGCGTGTTCAAAAATACATC 58.780 37.500 0.00 0.00 0.00 3.06
241 242 4.078363 AGCGTGTTCAAAAATACATCCG 57.922 40.909 0.00 0.00 0.00 4.18
242 243 2.592459 GCGTGTTCAAAAATACATCCGC 59.408 45.455 0.00 0.00 34.30 5.54
243 244 3.816091 CGTGTTCAAAAATACATCCGCA 58.184 40.909 0.00 0.00 0.00 5.69
244 245 3.602062 CGTGTTCAAAAATACATCCGCAC 59.398 43.478 0.00 0.00 0.00 5.34
245 246 4.612712 CGTGTTCAAAAATACATCCGCACT 60.613 41.667 0.00 0.00 0.00 4.40
246 247 4.851558 GTGTTCAAAAATACATCCGCACTC 59.148 41.667 0.00 0.00 0.00 3.51
247 248 4.088648 GTTCAAAAATACATCCGCACTCG 58.911 43.478 0.00 0.00 0.00 4.18
248 249 3.331150 TCAAAAATACATCCGCACTCGT 58.669 40.909 0.00 0.00 0.00 4.18
249 250 3.124466 TCAAAAATACATCCGCACTCGTG 59.876 43.478 0.00 0.00 0.00 4.35
250 251 2.380084 AAATACATCCGCACTCGTGT 57.620 45.000 0.00 0.00 0.00 4.49
251 252 3.513680 AAATACATCCGCACTCGTGTA 57.486 42.857 0.00 0.00 33.63 2.90
252 253 2.486951 ATACATCCGCACTCGTGTAC 57.513 50.000 0.00 0.00 32.49 2.90
253 254 1.166989 TACATCCGCACTCGTGTACA 58.833 50.000 0.00 0.00 0.00 2.90
254 255 0.530744 ACATCCGCACTCGTGTACAT 59.469 50.000 0.00 0.00 0.00 2.29
255 256 1.746787 ACATCCGCACTCGTGTACATA 59.253 47.619 0.00 0.00 0.00 2.29
256 257 2.117137 CATCCGCACTCGTGTACATAC 58.883 52.381 0.00 0.00 0.00 2.39
257 258 1.166989 TCCGCACTCGTGTACATACA 58.833 50.000 0.00 0.00 0.00 2.29
258 259 1.131693 TCCGCACTCGTGTACATACAG 59.868 52.381 0.00 0.00 36.78 2.74
259 260 1.131693 CCGCACTCGTGTACATACAGA 59.868 52.381 0.00 0.00 36.78 3.41
260 261 2.223502 CCGCACTCGTGTACATACAGAT 60.224 50.000 0.00 0.00 36.78 2.90
261 262 3.036633 CGCACTCGTGTACATACAGATC 58.963 50.000 0.00 0.00 36.78 2.75
262 263 3.242772 CGCACTCGTGTACATACAGATCT 60.243 47.826 0.00 0.00 36.78 2.75
263 264 4.283678 GCACTCGTGTACATACAGATCTC 58.716 47.826 0.00 0.00 36.78 2.75
264 265 4.790123 GCACTCGTGTACATACAGATCTCC 60.790 50.000 0.00 0.00 36.78 3.71
265 266 4.335594 CACTCGTGTACATACAGATCTCCA 59.664 45.833 0.00 0.00 36.78 3.86
266 267 4.948004 ACTCGTGTACATACAGATCTCCAA 59.052 41.667 0.00 0.00 36.78 3.53
267 268 5.594725 ACTCGTGTACATACAGATCTCCAAT 59.405 40.000 0.00 0.00 36.78 3.16
268 269 5.831997 TCGTGTACATACAGATCTCCAATG 58.168 41.667 0.00 0.00 36.78 2.82
269 270 5.592688 TCGTGTACATACAGATCTCCAATGA 59.407 40.000 13.00 0.00 36.78 2.57
270 271 6.265422 TCGTGTACATACAGATCTCCAATGAT 59.735 38.462 13.00 0.00 36.78 2.45
319 320 9.688091 GTTCATATATACTAGAGACTCCCATCA 57.312 37.037 0.00 0.00 0.00 3.07
605 625 6.711277 AGAGGACATGTTTATCTAGCAAACA 58.289 36.000 18.78 18.78 46.64 2.83
624 644 7.224557 AGCAAACATTCGCTAGTTTCAAATTTT 59.775 29.630 0.00 0.00 35.90 1.82
655 675 1.632422 CTCATTTGCCATGCCGAAAC 58.368 50.000 0.00 0.00 0.00 2.78
770 791 2.768527 ACGTGATCAGGATCCAATGACT 59.231 45.455 21.63 0.55 37.02 3.41
771 792 3.129109 CGTGATCAGGATCCAATGACTG 58.871 50.000 15.82 1.89 37.02 3.51
774 795 2.408271 TCAGGATCCAATGACTGTGC 57.592 50.000 15.82 0.00 32.92 4.57
850 873 7.233632 TCCGAATTTAGATGGATCATTTGGAT 58.766 34.615 5.08 0.00 39.53 3.41
886 1428 0.608035 AAAACCCACGCATCGGATGT 60.608 50.000 18.54 0.00 0.00 3.06
1138 1714 3.010420 GGTTGGAGCTTGGAATCAGTAC 58.990 50.000 0.00 0.00 0.00 2.73
1310 1893 8.049117 TCTTGCACACCTATTAGATCAAGATTT 58.951 33.333 0.00 0.00 35.28 2.17
1389 1972 1.202818 GGCAGGCTAGGGATTTAGTGG 60.203 57.143 0.00 0.00 0.00 4.00
1391 1974 2.485657 GCAGGCTAGGGATTTAGTGGTC 60.486 54.545 0.00 0.00 0.00 4.02
1396 1979 0.981183 AGGGATTTAGTGGTCGTGCA 59.019 50.000 0.00 0.00 0.00 4.57
1402 1985 4.320935 GGATTTAGTGGTCGTGCAACATTT 60.321 41.667 0.00 0.00 35.74 2.32
1421 2004 5.920273 ACATTTAGTTGAAATTTCCAGCACG 59.080 36.000 15.48 0.78 35.45 5.34
1424 2007 3.705604 AGTTGAAATTTCCAGCACGTTG 58.294 40.909 15.48 0.00 0.00 4.10
1425 2008 3.380004 AGTTGAAATTTCCAGCACGTTGA 59.620 39.130 15.48 0.00 0.00 3.18
1437 2020 5.066634 TCCAGCACGTTGAAGAAATTAACAA 59.933 36.000 0.00 0.00 0.00 2.83
1482 2065 0.377554 ACGACGATACAAGAGCTCCG 59.622 55.000 10.93 8.22 0.00 4.63
1522 2105 1.334869 GAAATCCGCCAGCGAATCATT 59.665 47.619 14.67 3.42 42.83 2.57
1534 2117 2.276201 CGAATCATTGTGGCCGAACTA 58.724 47.619 0.00 0.00 0.00 2.24
1586 2169 1.337447 GGCGCCAACTCTTGTACAGTA 60.337 52.381 24.80 0.00 0.00 2.74
1590 2173 3.181520 CGCCAACTCTTGTACAGTAATGC 60.182 47.826 0.00 0.00 0.00 3.56
1618 2201 1.004745 AGGTTCCGGCAGATCACAATT 59.995 47.619 0.00 0.00 0.00 2.32
1623 2206 1.439353 CGGCAGATCACAATTCCCCG 61.439 60.000 0.00 0.00 0.00 5.73
1645 2228 3.451894 GGCACATCCCCTTTGCCG 61.452 66.667 0.00 0.00 46.11 5.69
1649 2232 0.751277 CACATCCCCTTTGCCGCATA 60.751 55.000 0.00 0.00 0.00 3.14
1757 2340 1.880340 GCGAGCGAGGATGAACCAG 60.880 63.158 0.00 0.00 42.04 4.00
1922 2508 7.881775 AAAGTTTGTTCTGTTCCTAAGTCAT 57.118 32.000 0.00 0.00 0.00 3.06
1923 2509 8.974060 AAAGTTTGTTCTGTTCCTAAGTCATA 57.026 30.769 0.00 0.00 0.00 2.15
1924 2510 7.964604 AGTTTGTTCTGTTCCTAAGTCATAC 57.035 36.000 0.00 0.00 0.00 2.39
1925 2511 7.736893 AGTTTGTTCTGTTCCTAAGTCATACT 58.263 34.615 0.00 0.00 0.00 2.12
1926 2512 8.867097 AGTTTGTTCTGTTCCTAAGTCATACTA 58.133 33.333 0.00 0.00 0.00 1.82
1927 2513 9.141400 GTTTGTTCTGTTCCTAAGTCATACTAG 57.859 37.037 0.00 0.00 0.00 2.57
2023 2609 6.199908 CCTATGTCTCAGCTAAGATTTTGTCG 59.800 42.308 0.00 0.00 0.00 4.35
2137 2723 2.343101 TGTTATGTGACTAACTGCCGC 58.657 47.619 6.53 0.00 33.62 6.53
2204 2799 9.994432 AAATTCAAAAGATTGATCGTACATCTC 57.006 29.630 0.00 0.00 44.70 2.75
2661 3747 5.782677 TCCTAGGCCTTTAATGGTTGTTA 57.217 39.130 12.58 0.00 0.00 2.41
2662 3748 6.335781 TCCTAGGCCTTTAATGGTTGTTAT 57.664 37.500 12.58 0.00 0.00 1.89
2744 3837 8.188139 TCTTGAAAACTCATTTTGTAACCACTC 58.812 33.333 0.00 0.00 38.17 3.51
2993 4086 6.020360 GCGATTGAAATTTTTAGGATGTGCTC 60.020 38.462 0.00 0.00 0.00 4.26
3087 4198 6.042093 GGGACTCCTCAATGTATAGATTGTGA 59.958 42.308 20.34 16.42 35.25 3.58
3112 4225 2.554370 TTACACTGTGGGGCTTGTAC 57.446 50.000 13.09 0.00 0.00 2.90
3228 4341 3.493176 GCCAAACTGCCAATTTCTTGACT 60.493 43.478 0.00 0.00 34.04 3.41
3245 4358 7.854557 TCTTGACTCCATAAGTTGAATGATG 57.145 36.000 0.00 0.00 38.74 3.07
3342 4455 3.785486 TCTATGCAGATCTTTCGTGGTG 58.215 45.455 0.00 0.00 0.00 4.17
3419 4535 9.847706 AATCGATATGATCTGTATGTTGTAGAC 57.152 33.333 0.00 0.00 35.84 2.59
3426 4542 8.446599 TGATCTGTATGTTGTAGACGAGAATA 57.553 34.615 0.00 0.00 0.00 1.75
3427 4543 9.067986 TGATCTGTATGTTGTAGACGAGAATAT 57.932 33.333 0.00 0.00 0.00 1.28
3431 4547 9.335891 CTGTATGTTGTAGACGAGAATATGATC 57.664 37.037 0.00 0.00 0.00 2.92
3474 4590 7.657761 GCTAATAAGAACTCTATTAAGCAGGCA 59.342 37.037 0.00 0.00 0.00 4.75
3526 4642 1.001406 AGAGGAAACGGAGTGCAGAAG 59.999 52.381 0.00 0.00 45.00 2.85
4229 6221 4.993584 GTCAAGATGGATGTGCGATATCTT 59.006 41.667 0.34 0.00 38.30 2.40
4494 6486 4.576216 AACGGATGTATCTAGCACTGAG 57.424 45.455 0.00 0.00 0.00 3.35
4534 6526 7.905604 TCTGTTTCAGTGACAACTAATATGG 57.094 36.000 14.88 0.00 33.79 2.74
4570 6562 4.351874 AACTTAGCAACTGTTAGCCTGA 57.648 40.909 10.06 0.00 0.00 3.86
4590 6582 5.127845 CCTGAGCTTGGTAGACTCAATTCTA 59.872 44.000 0.00 0.00 39.79 2.10
4591 6583 5.967088 TGAGCTTGGTAGACTCAATTCTAC 58.033 41.667 2.25 2.25 45.07 2.59
4592 6584 5.717178 TGAGCTTGGTAGACTCAATTCTACT 59.283 40.000 9.53 0.00 45.12 2.57
4593 6585 6.127591 TGAGCTTGGTAGACTCAATTCTACTC 60.128 42.308 9.53 1.48 45.12 2.59
4594 6586 5.128008 AGCTTGGTAGACTCAATTCTACTCC 59.872 44.000 9.53 0.00 45.12 3.85
4595 6587 5.682730 GCTTGGTAGACTCAATTCTACTCCC 60.683 48.000 9.53 0.00 45.12 4.30
4596 6588 5.208294 TGGTAGACTCAATTCTACTCCCT 57.792 43.478 9.53 0.00 45.12 4.20
4597 6589 5.202004 TGGTAGACTCAATTCTACTCCCTC 58.798 45.833 9.53 0.00 45.12 4.30
4598 6590 4.585581 GGTAGACTCAATTCTACTCCCTCC 59.414 50.000 9.53 0.00 45.12 4.30
4599 6591 3.292460 AGACTCAATTCTACTCCCTCCG 58.708 50.000 0.00 0.00 0.00 4.63
4600 6592 3.025262 GACTCAATTCTACTCCCTCCGT 58.975 50.000 0.00 0.00 0.00 4.69
4601 6593 3.442076 ACTCAATTCTACTCCCTCCGTT 58.558 45.455 0.00 0.00 0.00 4.44
4602 6594 3.447944 ACTCAATTCTACTCCCTCCGTTC 59.552 47.826 0.00 0.00 0.00 3.95
4603 6595 2.764572 TCAATTCTACTCCCTCCGTTCC 59.235 50.000 0.00 0.00 0.00 3.62
4604 6596 2.500098 CAATTCTACTCCCTCCGTTCCA 59.500 50.000 0.00 0.00 0.00 3.53
4605 6597 2.314071 TTCTACTCCCTCCGTTCCAA 57.686 50.000 0.00 0.00 0.00 3.53
4606 6598 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
4607 6599 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
4608 6600 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
4609 6601 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
4610 6602 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4611 6603 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4612 6604 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4613 6605 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4614 6606 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4615 6607 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4616 6608 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4617 6609 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4618 6610 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4619 6611 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4620 6612 4.644685 CCGTTCCAAAATAGATGACCCAAT 59.355 41.667 0.00 0.00 0.00 3.16
4621 6613 5.127031 CCGTTCCAAAATAGATGACCCAATT 59.873 40.000 0.00 0.00 0.00 2.32
4622 6614 6.350949 CCGTTCCAAAATAGATGACCCAATTT 60.351 38.462 0.00 0.00 0.00 1.82
4623 6615 7.096551 CGTTCCAAAATAGATGACCCAATTTT 58.903 34.615 0.00 0.00 33.07 1.82
4624 6616 8.247562 CGTTCCAAAATAGATGACCCAATTTTA 58.752 33.333 0.00 0.00 31.97 1.52
4662 6654 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
4663 6655 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
4664 6656 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
4665 6657 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
4666 6658 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
4667 6659 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
4668 6660 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
4669 6661 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
4670 6662 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
4671 6663 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
4672 6664 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
4673 6665 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
4674 6666 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
4675 6667 8.650490 ACAAAGTTGGGTCATCTATTTTGAAAT 58.350 29.630 0.00 0.00 0.00 2.17
4676 6668 8.928733 CAAAGTTGGGTCATCTATTTTGAAATG 58.071 33.333 0.00 0.00 0.00 2.32
4677 6669 7.174107 AGTTGGGTCATCTATTTTGAAATGG 57.826 36.000 0.00 0.00 0.00 3.16
4678 6670 6.953520 AGTTGGGTCATCTATTTTGAAATGGA 59.046 34.615 5.21 5.21 39.67 3.41
4679 6671 7.123247 AGTTGGGTCATCTATTTTGAAATGGAG 59.877 37.037 8.22 2.49 38.91 3.86
4680 6672 5.893255 TGGGTCATCTATTTTGAAATGGAGG 59.107 40.000 7.79 7.79 38.91 4.30
4681 6673 5.302823 GGGTCATCTATTTTGAAATGGAGGG 59.697 44.000 12.38 6.38 38.91 4.30
4682 6674 6.129179 GGTCATCTATTTTGAAATGGAGGGA 58.871 40.000 12.38 8.08 38.91 4.20
4683 6675 6.264067 GGTCATCTATTTTGAAATGGAGGGAG 59.736 42.308 12.38 3.00 38.91 4.30
4684 6676 6.830838 GTCATCTATTTTGAAATGGAGGGAGT 59.169 38.462 12.38 0.00 38.91 3.85
4790 6782 6.152932 AGCATATTTTGGCCATTGTTCTAG 57.847 37.500 6.09 0.00 0.00 2.43
4995 6988 3.279434 TCAATCGAGACGATGGAGAAGA 58.721 45.455 7.39 0.00 46.30 2.87
5003 6996 4.647611 AGACGATGGAGAAGATACTCGAT 58.352 43.478 0.00 0.00 37.87 3.59
5046 7039 3.244561 GGATCACCCATCGGTCATACAAT 60.245 47.826 0.00 0.00 42.04 2.71
5097 7090 1.303561 GGATTGGCTGCTGGTGTCA 60.304 57.895 0.00 0.00 0.00 3.58
5228 7221 2.842496 TCATCAGAGCATCCTTGTCCTT 59.158 45.455 0.00 0.00 33.66 3.36
5232 7225 2.943690 CAGAGCATCCTTGTCCTTCATG 59.056 50.000 0.00 0.00 33.66 3.07
5234 7227 3.118334 AGAGCATCCTTGTCCTTCATGAG 60.118 47.826 0.00 0.00 33.66 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.585416 ACATCTATGTAGTGTCATGCAATGA 58.415 36.000 0.00 0.00 45.34 2.57
17 18 6.856135 ACATCTATGTAGTGTCATGCAATG 57.144 37.500 0.00 0.00 42.25 2.82
18 19 7.772292 AGAAACATCTATGTAGTGTCATGCAAT 59.228 33.333 0.00 0.00 40.80 3.56
19 20 7.105588 AGAAACATCTATGTAGTGTCATGCAA 58.894 34.615 0.00 0.00 40.80 4.08
20 21 6.643388 AGAAACATCTATGTAGTGTCATGCA 58.357 36.000 0.00 0.00 40.80 3.96
21 22 7.169982 GGTAGAAACATCTATGTAGTGTCATGC 59.830 40.741 0.00 0.00 40.80 4.06
22 23 7.653713 GGGTAGAAACATCTATGTAGTGTCATG 59.346 40.741 0.00 0.00 40.80 3.07
23 24 7.344612 TGGGTAGAAACATCTATGTAGTGTCAT 59.655 37.037 0.00 0.00 40.80 3.06
24 25 6.666113 TGGGTAGAAACATCTATGTAGTGTCA 59.334 38.462 0.00 0.00 40.80 3.58
25 26 6.979238 GTGGGTAGAAACATCTATGTAGTGTC 59.021 42.308 0.00 0.00 40.80 3.67
26 27 6.668283 AGTGGGTAGAAACATCTATGTAGTGT 59.332 38.462 0.00 0.00 40.80 3.55
27 28 7.113658 AGTGGGTAGAAACATCTATGTAGTG 57.886 40.000 0.00 0.00 40.80 2.74
28 29 8.861086 CATAGTGGGTAGAAACATCTATGTAGT 58.139 37.037 0.00 0.00 40.80 2.73
29 30 8.307483 CCATAGTGGGTAGAAACATCTATGTAG 58.693 40.741 0.00 0.00 35.14 2.74
30 31 8.008332 TCCATAGTGGGTAGAAACATCTATGTA 58.992 37.037 0.00 0.00 37.90 2.29
31 32 6.844388 TCCATAGTGGGTAGAAACATCTATGT 59.156 38.462 0.00 0.00 39.54 2.29
32 33 7.303182 TCCATAGTGGGTAGAAACATCTATG 57.697 40.000 0.00 0.00 38.32 2.23
33 34 6.498651 CCTCCATAGTGGGTAGAAACATCTAT 59.501 42.308 0.00 0.00 38.32 1.98
34 35 5.839063 CCTCCATAGTGGGTAGAAACATCTA 59.161 44.000 0.00 0.00 38.32 1.98
35 36 4.656112 CCTCCATAGTGGGTAGAAACATCT 59.344 45.833 0.00 0.00 38.32 2.90
36 37 4.409247 ACCTCCATAGTGGGTAGAAACATC 59.591 45.833 0.00 0.00 38.32 3.06
37 38 4.371681 ACCTCCATAGTGGGTAGAAACAT 58.628 43.478 0.00 0.00 38.32 2.71
38 39 3.798515 ACCTCCATAGTGGGTAGAAACA 58.201 45.455 0.00 0.00 38.32 2.83
44 45 5.470755 TGTTACTACCTCCATAGTGGGTA 57.529 43.478 0.00 0.00 38.32 3.69
45 46 4.341863 TGTTACTACCTCCATAGTGGGT 57.658 45.455 0.00 0.00 38.32 4.51
46 47 6.075984 ACTATGTTACTACCTCCATAGTGGG 58.924 44.000 9.63 0.00 44.96 4.61
47 48 7.005296 AGACTATGTTACTACCTCCATAGTGG 58.995 42.308 14.01 0.00 46.02 4.00
48 49 9.221933 CTAGACTATGTTACTACCTCCATAGTG 57.778 40.741 14.01 0.00 46.02 2.74
50 51 8.604184 TCCTAGACTATGTTACTACCTCCATAG 58.396 40.741 0.00 0.00 41.50 2.23
51 52 8.515927 TCCTAGACTATGTTACTACCTCCATA 57.484 38.462 0.00 0.00 0.00 2.74
52 53 7.403837 TCCTAGACTATGTTACTACCTCCAT 57.596 40.000 0.00 0.00 0.00 3.41
53 54 6.836714 TCCTAGACTATGTTACTACCTCCA 57.163 41.667 0.00 0.00 0.00 3.86
54 55 7.779326 ACTTTCCTAGACTATGTTACTACCTCC 59.221 40.741 0.00 0.00 0.00 4.30
55 56 8.623030 CACTTTCCTAGACTATGTTACTACCTC 58.377 40.741 0.00 0.00 0.00 3.85
56 57 8.114743 ACACTTTCCTAGACTATGTTACTACCT 58.885 37.037 0.00 0.00 0.00 3.08
57 58 8.189460 CACACTTTCCTAGACTATGTTACTACC 58.811 40.741 0.00 0.00 0.00 3.18
58 59 8.954350 TCACACTTTCCTAGACTATGTTACTAC 58.046 37.037 0.00 0.00 0.00 2.73
59 60 9.524496 TTCACACTTTCCTAGACTATGTTACTA 57.476 33.333 0.00 0.00 0.00 1.82
60 61 8.418597 TTCACACTTTCCTAGACTATGTTACT 57.581 34.615 0.00 0.00 0.00 2.24
61 62 8.305317 ACTTCACACTTTCCTAGACTATGTTAC 58.695 37.037 0.00 0.00 0.00 2.50
62 63 8.418597 ACTTCACACTTTCCTAGACTATGTTA 57.581 34.615 0.00 0.00 0.00 2.41
63 64 7.304497 ACTTCACACTTTCCTAGACTATGTT 57.696 36.000 0.00 0.00 0.00 2.71
64 65 6.919775 ACTTCACACTTTCCTAGACTATGT 57.080 37.500 0.00 0.00 0.00 2.29
65 66 8.524487 AGTAACTTCACACTTTCCTAGACTATG 58.476 37.037 0.00 0.00 0.00 2.23
66 67 8.653036 AGTAACTTCACACTTTCCTAGACTAT 57.347 34.615 0.00 0.00 0.00 2.12
67 68 9.228949 CTAGTAACTTCACACTTTCCTAGACTA 57.771 37.037 0.00 0.00 0.00 2.59
68 69 6.980416 AGTAACTTCACACTTTCCTAGACT 57.020 37.500 0.00 0.00 0.00 3.24
69 70 6.807720 GCTAGTAACTTCACACTTTCCTAGAC 59.192 42.308 0.00 0.00 0.00 2.59
70 71 6.720288 AGCTAGTAACTTCACACTTTCCTAGA 59.280 38.462 0.00 0.00 0.00 2.43
71 72 6.926313 AGCTAGTAACTTCACACTTTCCTAG 58.074 40.000 0.00 0.00 0.00 3.02
72 73 6.912951 AGCTAGTAACTTCACACTTTCCTA 57.087 37.500 0.00 0.00 0.00 2.94
73 74 5.810080 AGCTAGTAACTTCACACTTTCCT 57.190 39.130 0.00 0.00 0.00 3.36
74 75 7.603024 ACATAAGCTAGTAACTTCACACTTTCC 59.397 37.037 0.00 0.00 0.00 3.13
75 76 8.535690 ACATAAGCTAGTAACTTCACACTTTC 57.464 34.615 0.00 0.00 0.00 2.62
76 77 8.904099 AACATAAGCTAGTAACTTCACACTTT 57.096 30.769 0.00 0.00 0.00 2.66
77 78 8.368668 AGAACATAAGCTAGTAACTTCACACTT 58.631 33.333 0.00 0.00 0.00 3.16
78 79 7.897864 AGAACATAAGCTAGTAACTTCACACT 58.102 34.615 0.00 0.00 0.00 3.55
79 80 8.436200 CAAGAACATAAGCTAGTAACTTCACAC 58.564 37.037 0.00 0.00 0.00 3.82
80 81 7.117812 GCAAGAACATAAGCTAGTAACTTCACA 59.882 37.037 0.00 0.00 0.00 3.58
81 82 7.332182 AGCAAGAACATAAGCTAGTAACTTCAC 59.668 37.037 0.00 0.00 35.19 3.18
82 83 7.386851 AGCAAGAACATAAGCTAGTAACTTCA 58.613 34.615 0.00 0.00 35.19 3.02
83 84 7.545965 TGAGCAAGAACATAAGCTAGTAACTTC 59.454 37.037 0.00 0.00 37.48 3.01
84 85 7.386851 TGAGCAAGAACATAAGCTAGTAACTT 58.613 34.615 0.00 0.00 37.48 2.66
85 86 6.936279 TGAGCAAGAACATAAGCTAGTAACT 58.064 36.000 0.00 0.00 37.48 2.24
86 87 7.778470 ATGAGCAAGAACATAAGCTAGTAAC 57.222 36.000 0.00 0.00 37.48 2.50
87 88 7.824289 ACAATGAGCAAGAACATAAGCTAGTAA 59.176 33.333 0.00 0.00 37.48 2.24
88 89 7.278646 CACAATGAGCAAGAACATAAGCTAGTA 59.721 37.037 0.00 0.00 37.48 1.82
89 90 6.093219 CACAATGAGCAAGAACATAAGCTAGT 59.907 38.462 0.00 0.00 37.48 2.57
90 91 6.314648 TCACAATGAGCAAGAACATAAGCTAG 59.685 38.462 0.00 0.00 37.48 3.42
91 92 6.092670 GTCACAATGAGCAAGAACATAAGCTA 59.907 38.462 0.00 0.00 37.48 3.32
92 93 5.005740 TCACAATGAGCAAGAACATAAGCT 58.994 37.500 0.00 0.00 40.60 3.74
93 94 5.091431 GTCACAATGAGCAAGAACATAAGC 58.909 41.667 0.00 0.00 0.00 3.09
94 95 5.634896 GGTCACAATGAGCAAGAACATAAG 58.365 41.667 3.22 0.00 43.79 1.73
95 96 5.627499 GGTCACAATGAGCAAGAACATAA 57.373 39.130 3.22 0.00 43.79 1.90
105 106 2.012673 CTAAGGCTGGTCACAATGAGC 58.987 52.381 1.08 1.08 44.54 4.26
106 107 3.616956 TCTAAGGCTGGTCACAATGAG 57.383 47.619 0.00 0.00 0.00 2.90
107 108 4.202461 ACTTTCTAAGGCTGGTCACAATGA 60.202 41.667 0.00 0.00 0.00 2.57
108 109 4.074970 ACTTTCTAAGGCTGGTCACAATG 58.925 43.478 0.00 0.00 0.00 2.82
109 110 4.327680 GACTTTCTAAGGCTGGTCACAAT 58.672 43.478 0.00 0.00 32.23 2.71
110 111 3.496160 GGACTTTCTAAGGCTGGTCACAA 60.496 47.826 0.00 0.00 36.51 3.33
111 112 2.038557 GGACTTTCTAAGGCTGGTCACA 59.961 50.000 0.00 0.00 36.51 3.58
112 113 2.615747 GGGACTTTCTAAGGCTGGTCAC 60.616 54.545 0.00 0.00 36.51 3.67
113 114 1.628846 GGGACTTTCTAAGGCTGGTCA 59.371 52.381 0.00 0.00 36.51 4.02
114 115 1.065345 GGGGACTTTCTAAGGCTGGTC 60.065 57.143 0.00 0.00 36.51 4.02
115 116 0.992695 GGGGACTTTCTAAGGCTGGT 59.007 55.000 0.00 0.00 36.51 4.00
116 117 1.210722 GAGGGGACTTTCTAAGGCTGG 59.789 57.143 0.00 0.00 44.43 4.85
117 118 2.169561 GAGAGGGGACTTTCTAAGGCTG 59.830 54.545 0.00 0.00 44.43 4.85
118 119 2.225650 TGAGAGGGGACTTTCTAAGGCT 60.226 50.000 0.00 0.00 44.43 4.58
119 120 2.093394 GTGAGAGGGGACTTTCTAAGGC 60.093 54.545 0.00 0.00 44.43 4.35
120 121 3.445987 AGTGAGAGGGGACTTTCTAAGG 58.554 50.000 0.00 0.00 44.43 2.69
121 122 3.129638 CGAGTGAGAGGGGACTTTCTAAG 59.870 52.174 0.00 0.00 44.43 2.18
122 123 3.090037 CGAGTGAGAGGGGACTTTCTAA 58.910 50.000 0.00 0.00 44.43 2.10
123 124 2.041350 ACGAGTGAGAGGGGACTTTCTA 59.959 50.000 0.00 0.00 44.43 2.10
124 125 1.203075 ACGAGTGAGAGGGGACTTTCT 60.203 52.381 0.00 0.00 44.43 2.52
125 126 1.258676 ACGAGTGAGAGGGGACTTTC 58.741 55.000 0.00 0.00 44.43 2.62
126 127 2.599408 TACGAGTGAGAGGGGACTTT 57.401 50.000 0.00 0.00 44.43 2.66
127 128 2.830651 ATACGAGTGAGAGGGGACTT 57.169 50.000 0.00 0.00 44.43 3.01
128 129 2.485124 CGTATACGAGTGAGAGGGGACT 60.485 54.545 20.58 0.00 43.58 3.85
129 130 1.872313 CGTATACGAGTGAGAGGGGAC 59.128 57.143 20.58 0.00 43.02 4.46
130 131 1.813092 GCGTATACGAGTGAGAGGGGA 60.813 57.143 28.66 0.00 43.02 4.81
131 132 0.592148 GCGTATACGAGTGAGAGGGG 59.408 60.000 28.66 0.00 43.02 4.79
132 133 1.002684 GTGCGTATACGAGTGAGAGGG 60.003 57.143 28.66 0.00 43.02 4.30
133 134 1.332993 CGTGCGTATACGAGTGAGAGG 60.333 57.143 28.66 6.36 46.46 3.69
134 135 1.332993 CCGTGCGTATACGAGTGAGAG 60.333 57.143 28.66 10.97 46.46 3.20
135 136 0.654160 CCGTGCGTATACGAGTGAGA 59.346 55.000 28.66 1.81 46.46 3.27
136 137 0.928908 GCCGTGCGTATACGAGTGAG 60.929 60.000 28.66 12.88 46.46 3.51
137 138 1.063006 GCCGTGCGTATACGAGTGA 59.937 57.895 28.66 6.07 46.46 3.41
138 139 1.942712 GGCCGTGCGTATACGAGTG 60.943 63.158 28.66 15.36 46.46 3.51
139 140 2.056481 GAGGCCGTGCGTATACGAGT 62.056 60.000 28.66 4.00 46.46 4.18
140 141 1.370172 GAGGCCGTGCGTATACGAG 60.370 63.158 28.66 17.18 46.46 4.18
141 142 2.717485 GAGGCCGTGCGTATACGA 59.283 61.111 28.66 11.02 46.46 3.43
142 143 2.354305 GGAGGCCGTGCGTATACG 60.354 66.667 20.87 20.87 43.35 3.06
143 144 1.142314 TTGGAGGCCGTGCGTATAC 59.858 57.895 0.00 0.00 0.00 1.47
144 145 1.142314 GTTGGAGGCCGTGCGTATA 59.858 57.895 0.00 0.00 0.00 1.47
145 146 2.125269 GTTGGAGGCCGTGCGTAT 60.125 61.111 0.00 0.00 0.00 3.06
146 147 2.457743 ATTGTTGGAGGCCGTGCGTA 62.458 55.000 0.00 0.00 0.00 4.42
147 148 3.842925 ATTGTTGGAGGCCGTGCGT 62.843 57.895 0.00 0.00 0.00 5.24
148 149 1.302383 TAATTGTTGGAGGCCGTGCG 61.302 55.000 0.00 0.00 0.00 5.34
149 150 0.170339 GTAATTGTTGGAGGCCGTGC 59.830 55.000 0.00 0.00 0.00 5.34
150 151 0.446222 CGTAATTGTTGGAGGCCGTG 59.554 55.000 0.00 0.00 0.00 4.94
151 152 1.303091 GCGTAATTGTTGGAGGCCGT 61.303 55.000 0.00 0.00 0.00 5.68
152 153 1.427819 GCGTAATTGTTGGAGGCCG 59.572 57.895 0.00 0.00 0.00 6.13
153 154 0.963355 TGGCGTAATTGTTGGAGGCC 60.963 55.000 0.00 0.00 43.00 5.19
154 155 0.885196 TTGGCGTAATTGTTGGAGGC 59.115 50.000 0.00 0.00 0.00 4.70
155 156 2.161609 GTCTTGGCGTAATTGTTGGAGG 59.838 50.000 0.00 0.00 0.00 4.30
166 167 4.195225 TCATATGTTGTGTCTTGGCGTA 57.805 40.909 1.90 0.00 0.00 4.42
181 182 9.597170 CCAACCTCTCAGTATATGAATCATATG 57.403 37.037 22.23 10.23 37.57 1.78
184 185 6.043590 TGCCAACCTCTCAGTATATGAATCAT 59.956 38.462 0.00 0.00 37.52 2.45
187 188 5.455326 GGTGCCAACCTCTCAGTATATGAAT 60.455 44.000 0.00 0.00 43.84 2.57
228 229 3.120338 ACACGAGTGCGGATGTATTTTTG 60.120 43.478 2.76 0.00 43.17 2.44
234 235 1.166989 TGTACACGAGTGCGGATGTA 58.833 50.000 2.76 0.00 43.17 2.29
235 236 0.530744 ATGTACACGAGTGCGGATGT 59.469 50.000 0.00 0.00 43.17 3.06
236 237 2.117137 GTATGTACACGAGTGCGGATG 58.883 52.381 0.00 0.00 43.17 3.51
237 238 1.746787 TGTATGTACACGAGTGCGGAT 59.253 47.619 0.00 0.00 43.17 4.18
238 239 1.131693 CTGTATGTACACGAGTGCGGA 59.868 52.381 0.00 0.00 43.17 5.54
239 240 1.131693 TCTGTATGTACACGAGTGCGG 59.868 52.381 0.00 0.00 43.17 5.69
241 242 4.283678 GAGATCTGTATGTACACGAGTGC 58.716 47.826 0.00 0.00 31.93 4.40
242 243 4.335594 TGGAGATCTGTATGTACACGAGTG 59.664 45.833 0.00 1.13 31.93 3.51
243 244 4.524053 TGGAGATCTGTATGTACACGAGT 58.476 43.478 0.00 0.00 31.93 4.18
244 245 5.500645 TTGGAGATCTGTATGTACACGAG 57.499 43.478 0.00 0.00 31.93 4.18
245 246 5.592688 TCATTGGAGATCTGTATGTACACGA 59.407 40.000 0.00 0.00 31.93 4.35
246 247 5.831997 TCATTGGAGATCTGTATGTACACG 58.168 41.667 0.00 0.00 31.93 4.49
247 248 7.383572 GTCATCATTGGAGATCTGTATGTACAC 59.616 40.741 0.00 0.00 31.93 2.90
248 249 7.069826 TGTCATCATTGGAGATCTGTATGTACA 59.930 37.037 0.00 0.00 34.56 2.90
249 250 7.436933 TGTCATCATTGGAGATCTGTATGTAC 58.563 38.462 0.00 3.06 0.00 2.90
250 251 7.601705 TGTCATCATTGGAGATCTGTATGTA 57.398 36.000 0.00 0.00 0.00 2.29
251 252 6.490241 TGTCATCATTGGAGATCTGTATGT 57.510 37.500 0.00 0.00 0.00 2.29
252 253 7.981102 AATGTCATCATTGGAGATCTGTATG 57.019 36.000 0.00 0.86 41.95 2.39
255 256 8.991783 ATTTAATGTCATCATTGGAGATCTGT 57.008 30.769 0.00 0.00 43.17 3.41
300 301 7.070821 GGGTTTTTGATGGGAGTCTCTAGTATA 59.929 40.741 0.00 0.00 0.00 1.47
303 304 4.019231 GGGTTTTTGATGGGAGTCTCTAGT 60.019 45.833 0.00 0.00 0.00 2.57
304 305 4.019321 TGGGTTTTTGATGGGAGTCTCTAG 60.019 45.833 0.00 0.00 0.00 2.43
305 306 3.913799 TGGGTTTTTGATGGGAGTCTCTA 59.086 43.478 0.00 0.00 0.00 2.43
319 320 4.522722 TTCTCAAACACGTTGGGTTTTT 57.477 36.364 0.13 0.00 38.97 1.94
322 323 3.249080 CGTATTCTCAAACACGTTGGGTT 59.751 43.478 0.00 0.00 38.97 4.11
338 339 3.048942 ACGAGTCGTGTGATCGTATTC 57.951 47.619 19.16 0.00 46.95 1.75
601 621 7.708752 TGGAAAATTTGAAACTAGCGAATGTTT 59.291 29.630 0.00 0.00 38.84 2.83
605 625 8.087750 TCATTGGAAAATTTGAAACTAGCGAAT 58.912 29.630 0.00 0.00 0.00 3.34
679 699 6.445451 TGGAAAATTTCATGAATTTCCCCA 57.555 33.333 31.96 26.19 44.98 4.96
680 700 6.885918 ACATGGAAAATTTCATGAATTTCCCC 59.114 34.615 31.96 24.76 44.98 4.81
789 812 1.347817 CGTTCGCTGAGAAGGCAGTC 61.348 60.000 1.14 0.00 39.95 3.51
850 873 7.470286 CGTGGGTTTTAATTAGGACTTCCAAAA 60.470 37.037 0.00 0.00 38.89 2.44
886 1428 2.969262 GACTGGTTTCCCAATCCCAAAA 59.031 45.455 0.00 0.00 41.27 2.44
905 1447 0.974383 TTTGGTTCCTCCTCCGAGAC 59.026 55.000 0.00 0.00 38.52 3.36
906 1448 0.974383 GTTTGGTTCCTCCTCCGAGA 59.026 55.000 0.00 0.00 38.52 4.04
907 1449 0.389948 CGTTTGGTTCCTCCTCCGAG 60.390 60.000 0.00 0.00 37.07 4.63
908 1450 1.669440 CGTTTGGTTCCTCCTCCGA 59.331 57.895 0.00 0.00 37.07 4.55
909 1451 2.033194 GCGTTTGGTTCCTCCTCCG 61.033 63.158 0.00 0.00 37.07 4.63
910 1452 1.072505 TGCGTTTGGTTCCTCCTCC 59.927 57.895 0.00 0.00 37.07 4.30
911 1453 1.566018 CGTGCGTTTGGTTCCTCCTC 61.566 60.000 0.00 0.00 37.07 3.71
912 1454 1.597027 CGTGCGTTTGGTTCCTCCT 60.597 57.895 0.00 0.00 37.07 3.69
1396 1979 6.420604 CGTGCTGGAAATTTCAACTAAATGTT 59.579 34.615 19.49 0.00 37.85 2.71
1402 1985 4.576873 TCAACGTGCTGGAAATTTCAACTA 59.423 37.500 19.49 0.93 0.00 2.24
1421 2004 5.331235 CGCAACCGTTGTTAATTTCTTCAAC 60.331 40.000 12.77 0.00 37.42 3.18
1424 2007 4.861665 CGCAACCGTTGTTAATTTCTTC 57.138 40.909 12.77 0.00 32.09 2.87
1482 2065 3.423154 CGTGCAAGAGTTCCCGGC 61.423 66.667 0.00 0.00 0.00 6.13
1571 2154 4.997395 ACCAGCATTACTGTACAAGAGTTG 59.003 41.667 0.00 0.00 45.68 3.16
1586 2169 1.607467 GGAACCTGGCACCAGCATT 60.607 57.895 11.39 7.57 44.61 3.56
1618 2201 4.504596 GATGTGCCATGGCGGGGA 62.505 66.667 30.87 15.09 45.51 4.81
1623 2206 1.686800 AAAGGGGATGTGCCATGGC 60.687 57.895 30.54 30.54 38.95 4.40
1645 2228 0.940126 CGTCCAGTGGCTCATTATGC 59.060 55.000 3.51 0.00 0.00 3.14
1649 2232 4.701663 CACGTCCAGTGGCTCATT 57.298 55.556 3.51 0.00 46.77 2.57
1676 2259 0.669318 TTAACGGGCTGTCTCGCAAG 60.669 55.000 0.00 0.00 0.00 4.01
2137 2723 6.643770 GCATAGAACAAATTAATGAGCCCATG 59.356 38.462 0.00 0.00 32.36 3.66
2661 3747 4.660303 TGGGATAGGAAGTGTCAAGCATAT 59.340 41.667 0.00 0.00 0.00 1.78
2662 3748 4.037222 TGGGATAGGAAGTGTCAAGCATA 58.963 43.478 0.00 0.00 0.00 3.14
2781 3874 4.941263 TGAAAAGTACTTTCACAGTGCACT 59.059 37.500 20.78 15.25 46.80 4.40
2993 4086 3.425577 TGTTGCTTGTTTTCAGAGCAG 57.574 42.857 0.00 0.00 41.23 4.24
3051 4144 3.791320 TGAGGAGTCCCAGTTCACTTAT 58.209 45.455 5.25 0.00 33.88 1.73
3087 4198 5.083821 ACAAGCCCCACAGTGTAATTTATT 58.916 37.500 0.00 0.00 0.00 1.40
3093 4204 1.769465 TGTACAAGCCCCACAGTGTAA 59.231 47.619 0.00 0.00 0.00 2.41
3228 4341 7.126268 TCTCTTCTCCATCATTCAACTTATGGA 59.874 37.037 0.00 0.00 44.32 3.41
3245 4358 5.934625 TGCACTTTATCTTGTTCTCTTCTCC 59.065 40.000 0.00 0.00 0.00 3.71
3342 4455 6.523201 CCAGACAAACGTATACAAATTTCTGC 59.477 38.462 3.32 0.00 0.00 4.26
3419 4535 4.563061 TGGCATGACTGATCATATTCTCG 58.437 43.478 0.00 0.00 44.13 4.04
3427 4543 4.891168 AGCATAAAATGGCATGACTGATCA 59.109 37.500 0.00 0.00 39.83 2.92
3431 4547 8.570488 TCTTATTAGCATAAAATGGCATGACTG 58.430 33.333 0.00 0.00 0.00 3.51
3474 4590 2.417097 GCCTGTTTGTGCCGCTTT 59.583 55.556 0.00 0.00 0.00 3.51
4420 6412 2.689034 AGTCTACCCAGCCCAGGC 60.689 66.667 0.00 0.00 42.33 4.85
4462 6454 5.172934 AGATACATCCGTTTAAGCGACAAA 58.827 37.500 13.69 0.00 0.00 2.83
4494 6486 8.079203 ACTGAAACAGATGTATCTCGACATATC 58.921 37.037 5.76 0.00 40.18 1.63
4534 6526 3.243670 GCTAAGTTATACTCCCACCGTCC 60.244 52.174 0.00 0.00 0.00 4.79
4590 6582 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4591 6583 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4592 6584 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4593 6585 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4594 6586 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4595 6587 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4596 6588 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4597 6589 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4598 6590 5.835113 ATTGGGTCATCTATTTTGGAACG 57.165 39.130 0.00 0.00 0.00 3.95
4636 6628 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
4637 6629 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
4638 6630 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
4639 6631 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
4640 6632 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
4641 6633 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
4642 6634 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
4643 6635 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
4644 6636 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4645 6637 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
4646 6638 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
4647 6639 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
4648 6640 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
4649 6641 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
4650 6642 8.928733 CATTTCAAAATAGATGACCCAACTTTG 58.071 33.333 0.00 0.00 0.00 2.77
4651 6643 8.096414 CCATTTCAAAATAGATGACCCAACTTT 58.904 33.333 0.00 0.00 0.00 2.66
4652 6644 7.454380 TCCATTTCAAAATAGATGACCCAACTT 59.546 33.333 0.00 0.00 0.00 2.66
4653 6645 6.953520 TCCATTTCAAAATAGATGACCCAACT 59.046 34.615 0.00 0.00 0.00 3.16
4654 6646 7.169158 TCCATTTCAAAATAGATGACCCAAC 57.831 36.000 0.00 0.00 0.00 3.77
4655 6647 6.380846 CCTCCATTTCAAAATAGATGACCCAA 59.619 38.462 0.00 0.00 0.00 4.12
4656 6648 5.893255 CCTCCATTTCAAAATAGATGACCCA 59.107 40.000 0.00 0.00 0.00 4.51
4657 6649 5.302823 CCCTCCATTTCAAAATAGATGACCC 59.697 44.000 0.00 0.00 0.00 4.46
4658 6650 6.129179 TCCCTCCATTTCAAAATAGATGACC 58.871 40.000 0.00 0.00 0.00 4.02
4659 6651 6.830838 ACTCCCTCCATTTCAAAATAGATGAC 59.169 38.462 0.00 0.00 0.00 3.06
4660 6652 6.973642 ACTCCCTCCATTTCAAAATAGATGA 58.026 36.000 0.00 0.00 0.00 2.92
4661 6653 8.213679 TCTACTCCCTCCATTTCAAAATAGATG 58.786 37.037 0.00 0.00 0.00 2.90
4662 6654 8.337118 TCTACTCCCTCCATTTCAAAATAGAT 57.663 34.615 0.00 0.00 0.00 1.98
4663 6655 7.749377 TCTACTCCCTCCATTTCAAAATAGA 57.251 36.000 0.00 0.00 0.00 1.98
4664 6656 8.049721 AGTTCTACTCCCTCCATTTCAAAATAG 58.950 37.037 0.00 0.00 0.00 1.73
4665 6657 7.928873 AGTTCTACTCCCTCCATTTCAAAATA 58.071 34.615 0.00 0.00 0.00 1.40
4666 6658 6.794534 AGTTCTACTCCCTCCATTTCAAAAT 58.205 36.000 0.00 0.00 0.00 1.82
4667 6659 6.200878 AGTTCTACTCCCTCCATTTCAAAA 57.799 37.500 0.00 0.00 0.00 2.44
4668 6660 5.843019 AGTTCTACTCCCTCCATTTCAAA 57.157 39.130 0.00 0.00 0.00 2.69
4669 6661 5.843019 AAGTTCTACTCCCTCCATTTCAA 57.157 39.130 0.00 0.00 0.00 2.69
4670 6662 5.104900 GCTAAGTTCTACTCCCTCCATTTCA 60.105 44.000 0.00 0.00 0.00 2.69
4671 6663 5.104900 TGCTAAGTTCTACTCCCTCCATTTC 60.105 44.000 0.00 0.00 0.00 2.17
4672 6664 4.783227 TGCTAAGTTCTACTCCCTCCATTT 59.217 41.667 0.00 0.00 0.00 2.32
4673 6665 4.362677 TGCTAAGTTCTACTCCCTCCATT 58.637 43.478 0.00 0.00 0.00 3.16
4674 6666 3.995636 TGCTAAGTTCTACTCCCTCCAT 58.004 45.455 0.00 0.00 0.00 3.41
4675 6667 3.468071 TGCTAAGTTCTACTCCCTCCA 57.532 47.619 0.00 0.00 0.00 3.86
4676 6668 3.770388 AGTTGCTAAGTTCTACTCCCTCC 59.230 47.826 0.00 0.00 0.00 4.30
4677 6669 4.221041 ACAGTTGCTAAGTTCTACTCCCTC 59.779 45.833 0.00 0.00 0.00 4.30
4678 6670 4.161102 ACAGTTGCTAAGTTCTACTCCCT 58.839 43.478 0.00 0.00 0.00 4.20
4679 6671 4.538746 ACAGTTGCTAAGTTCTACTCCC 57.461 45.455 0.00 0.00 0.00 4.30
4680 6672 5.577554 GCTAACAGTTGCTAAGTTCTACTCC 59.422 44.000 0.00 0.00 0.00 3.85
4681 6673 6.309251 CAGCTAACAGTTGCTAAGTTCTACTC 59.691 42.308 9.15 0.00 37.81 2.59
4682 6674 6.159988 CAGCTAACAGTTGCTAAGTTCTACT 58.840 40.000 9.15 0.00 37.81 2.57
4683 6675 5.927115 ACAGCTAACAGTTGCTAAGTTCTAC 59.073 40.000 9.15 0.00 37.81 2.59
4684 6676 6.097915 ACAGCTAACAGTTGCTAAGTTCTA 57.902 37.500 9.15 0.00 37.81 2.10
4790 6782 6.595716 AGTGGATTGATGACAGTTAAAGCTAC 59.404 38.462 0.00 0.00 0.00 3.58
4829 6821 1.336795 TGAAGCTCGCGATCTGTTCAA 60.337 47.619 13.97 0.00 0.00 2.69
4995 6988 5.794894 ACAAAACAAGTGGAGATCGAGTAT 58.205 37.500 0.00 0.00 0.00 2.12
5003 6996 3.287222 CCCTTGACAAAACAAGTGGAGA 58.713 45.455 0.00 0.00 43.72 3.71
5046 7039 0.035176 CCCCTTCGGTGGTTTACGAA 59.965 55.000 0.00 0.00 45.61 3.85
5097 7090 2.810400 CGGACCAACTGAAACTGGTGAT 60.810 50.000 0.00 0.00 46.12 3.06
5228 7221 9.091784 CAAAGTAAAATCTCTCGATTCTCATGA 57.908 33.333 0.00 0.00 38.89 3.07
5232 7225 7.532682 AGCAAAGTAAAATCTCTCGATTCTC 57.467 36.000 0.00 0.00 38.89 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.