Multiple sequence alignment - TraesCS7B01G149300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G149300 chr7B 100.000 3794 0 0 1 3794 196914145 196910352 0.000000e+00 7007
1 TraesCS7B01G149300 chr7D 97.023 1881 50 3 944 2820 205538389 205540267 0.000000e+00 3158
2 TraesCS7B01G149300 chr7D 91.051 514 36 8 4 512 386839719 386839211 0.000000e+00 686
3 TraesCS7B01G149300 chr7D 89.474 437 41 4 404 838 386839234 386838801 7.170000e-152 547
4 TraesCS7B01G149300 chr7D 90.727 399 19 4 3133 3531 205540263 205540643 2.020000e-142 516
5 TraesCS7B01G149300 chr7D 92.615 325 24 0 2817 3141 434932624 434932300 5.740000e-128 468
6 TraesCS7B01G149300 chr7D 83.871 279 7 14 3552 3794 205540855 205541131 8.200000e-57 231
7 TraesCS7B01G149300 chr7A 96.478 1874 58 3 954 2820 217551888 217553760 0.000000e+00 3088
8 TraesCS7B01G149300 chr7A 90.998 411 18 2 3121 3531 217553745 217554136 1.550000e-148 536
9 TraesCS7B01G149300 chr7A 92.355 327 24 1 2817 3142 32862532 32862206 7.420000e-127 464
10 TraesCS7B01G149300 chr7A 84.262 305 15 14 3521 3794 217554159 217554461 2.250000e-67 267
11 TraesCS7B01G149300 chr7A 96.040 101 4 0 2719 2819 217555080 217555180 8.430000e-37 165
12 TraesCS7B01G149300 chr2D 91.320 841 63 9 4 837 547767227 547766390 0.000000e+00 1140
13 TraesCS7B01G149300 chr2D 92.587 715 45 5 127 834 461085118 461085831 0.000000e+00 1020
14 TraesCS7B01G149300 chr6B 90.920 837 70 6 4 837 485773074 485772241 0.000000e+00 1120
15 TraesCS7B01G149300 chr6B 86.187 876 70 19 1 827 17413359 17414232 0.000000e+00 900
16 TraesCS7B01G149300 chr6B 95.975 323 13 0 2816 3138 703322616 703322294 3.360000e-145 525
17 TraesCS7B01G149300 chr6B 94.688 320 17 0 2817 3136 493100502 493100183 7.320000e-137 497
18 TraesCS7B01G149300 chr6B 93.478 322 21 0 2816 3137 548176930 548176609 2.650000e-131 479
19 TraesCS7B01G149300 chr4D 89.756 859 51 13 4 845 451835853 451835015 0.000000e+00 1064
20 TraesCS7B01G149300 chr3A 87.067 866 71 13 6 837 740755010 740754152 0.000000e+00 941
21 TraesCS7B01G149300 chr3A 86.212 718 61 12 151 837 740691914 740691204 0.000000e+00 743
22 TraesCS7B01G149300 chr3A 83.853 353 45 6 4 346 233904217 233903867 3.650000e-85 326
23 TraesCS7B01G149300 chr4A 85.397 856 100 15 7 841 411144973 411144122 0.000000e+00 865
24 TraesCS7B01G149300 chr5B 90.023 441 34 7 406 838 622383332 622383770 2.560000e-156 562
25 TraesCS7B01G149300 chr5B 93.125 320 22 0 2817 3136 537787810 537787491 1.600000e-128 470
26 TraesCS7B01G149300 chr1B 94.937 316 11 1 2819 3134 39072549 39072859 1.220000e-134 490
27 TraesCS7B01G149300 chr1D 93.478 322 21 0 2816 3137 9269888 9269567 2.650000e-131 479
28 TraesCS7B01G149300 chr4B 92.835 321 21 1 2816 3136 186964082 186963764 7.420000e-127 464
29 TraesCS7B01G149300 chrUn 93.925 214 11 2 1 212 96354694 96354907 4.730000e-84 322


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G149300 chr7B 196910352 196914145 3793 True 7007.000000 7007 100.000000 1 3794 1 chr7B.!!$R1 3793
1 TraesCS7B01G149300 chr7D 205538389 205541131 2742 False 1301.666667 3158 90.540333 944 3794 3 chr7D.!!$F1 2850
2 TraesCS7B01G149300 chr7D 386838801 386839719 918 True 616.500000 686 90.262500 4 838 2 chr7D.!!$R2 834
3 TraesCS7B01G149300 chr7A 217551888 217555180 3292 False 1014.000000 3088 91.944500 954 3794 4 chr7A.!!$F1 2840
4 TraesCS7B01G149300 chr2D 547766390 547767227 837 True 1140.000000 1140 91.320000 4 837 1 chr2D.!!$R1 833
5 TraesCS7B01G149300 chr2D 461085118 461085831 713 False 1020.000000 1020 92.587000 127 834 1 chr2D.!!$F1 707
6 TraesCS7B01G149300 chr6B 485772241 485773074 833 True 1120.000000 1120 90.920000 4 837 1 chr6B.!!$R1 833
7 TraesCS7B01G149300 chr6B 17413359 17414232 873 False 900.000000 900 86.187000 1 827 1 chr6B.!!$F1 826
8 TraesCS7B01G149300 chr4D 451835015 451835853 838 True 1064.000000 1064 89.756000 4 845 1 chr4D.!!$R1 841
9 TraesCS7B01G149300 chr3A 740754152 740755010 858 True 941.000000 941 87.067000 6 837 1 chr3A.!!$R3 831
10 TraesCS7B01G149300 chr3A 740691204 740691914 710 True 743.000000 743 86.212000 151 837 1 chr3A.!!$R2 686
11 TraesCS7B01G149300 chr4A 411144122 411144973 851 True 865.000000 865 85.397000 7 841 1 chr4A.!!$R1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 1088 0.10339 TCAGACAGTTCGCGGTTCAA 59.897 50.0 6.13 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2846 3060 0.033796 ATGTGGCATGCTTAGCACCT 60.034 50.0 18.92 7.18 43.04 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 90 2.132740 TTTTCTGCAACAACATCCGC 57.867 45.000 0.00 0.00 0.00 5.54
329 346 5.651139 CCATCTGTTTCAGAAATGAGGACAT 59.349 40.000 12.27 0.00 44.04 3.06
373 438 6.540323 CGAATCCTTTAAAAAGATTCGCAC 57.460 37.500 30.23 13.65 42.12 5.34
423 505 5.512753 AATCTGCAACACAACACATGTTA 57.487 34.783 0.00 0.00 41.46 2.41
428 510 3.854809 GCAACACAACACATGTTACGTTT 59.145 39.130 0.00 0.00 41.46 3.60
494 674 3.948473 GACCCTCCTCTAATTTTTCTGCC 59.052 47.826 0.00 0.00 0.00 4.85
525 705 0.238553 GTTGCAGAAGTTTCTCCCGC 59.761 55.000 0.00 0.00 34.74 6.13
671 869 2.250190 CGGTTCCGACGTTTTGCC 59.750 61.111 5.19 0.00 0.00 4.52
733 940 0.249868 GTTGCAAAAGGAAGGTGGCC 60.250 55.000 0.00 0.00 0.00 5.36
778 985 2.452064 ATCCCCGCGTCCATCCAAT 61.452 57.895 4.92 0.00 0.00 3.16
810 1017 2.608090 GCGGTGGATGTTTTCTAGCTAC 59.392 50.000 0.00 0.00 31.67 3.58
845 1052 3.670203 CGTAGCGTGATCCAAATCAAAC 58.330 45.455 0.00 0.00 43.42 2.93
846 1053 2.900122 AGCGTGATCCAAATCAAACG 57.100 45.000 0.00 0.00 43.42 3.60
847 1054 1.468520 AGCGTGATCCAAATCAAACGG 59.531 47.619 0.00 0.00 43.42 4.44
848 1055 1.895051 CGTGATCCAAATCAAACGGC 58.105 50.000 0.00 0.00 43.42 5.68
849 1056 1.468520 CGTGATCCAAATCAAACGGCT 59.531 47.619 0.00 0.00 43.42 5.52
850 1057 2.095263 CGTGATCCAAATCAAACGGCTT 60.095 45.455 0.00 0.00 43.42 4.35
851 1058 3.126171 CGTGATCCAAATCAAACGGCTTA 59.874 43.478 0.00 0.00 43.42 3.09
852 1059 4.201910 CGTGATCCAAATCAAACGGCTTAT 60.202 41.667 0.00 0.00 43.42 1.73
853 1060 5.036737 GTGATCCAAATCAAACGGCTTATG 58.963 41.667 0.00 0.00 43.42 1.90
854 1061 4.946772 TGATCCAAATCAAACGGCTTATGA 59.053 37.500 0.00 0.00 38.97 2.15
855 1062 4.695217 TCCAAATCAAACGGCTTATGAC 57.305 40.909 0.00 0.00 0.00 3.06
856 1063 4.075682 TCCAAATCAAACGGCTTATGACA 58.924 39.130 0.00 0.00 0.00 3.58
857 1064 4.704540 TCCAAATCAAACGGCTTATGACAT 59.295 37.500 0.00 0.00 0.00 3.06
858 1065 5.883115 TCCAAATCAAACGGCTTATGACATA 59.117 36.000 0.00 0.00 0.00 2.29
859 1066 6.545666 TCCAAATCAAACGGCTTATGACATAT 59.454 34.615 0.00 0.00 0.00 1.78
860 1067 7.717436 TCCAAATCAAACGGCTTATGACATATA 59.283 33.333 0.00 0.00 0.00 0.86
861 1068 8.349245 CCAAATCAAACGGCTTATGACATATAA 58.651 33.333 0.00 0.00 0.00 0.98
862 1069 9.897744 CAAATCAAACGGCTTATGACATATAAT 57.102 29.630 0.00 0.00 0.00 1.28
864 1071 8.846943 ATCAAACGGCTTATGACATATAATCA 57.153 30.769 0.00 0.00 0.00 2.57
865 1072 8.310406 TCAAACGGCTTATGACATATAATCAG 57.690 34.615 0.00 0.00 0.00 2.90
866 1073 8.147704 TCAAACGGCTTATGACATATAATCAGA 58.852 33.333 0.00 0.00 0.00 3.27
867 1074 7.891183 AACGGCTTATGACATATAATCAGAC 57.109 36.000 0.00 0.00 0.00 3.51
868 1075 6.993079 ACGGCTTATGACATATAATCAGACA 58.007 36.000 0.00 0.00 0.00 3.41
869 1076 7.093354 ACGGCTTATGACATATAATCAGACAG 58.907 38.462 0.00 0.00 0.00 3.51
870 1077 7.093354 CGGCTTATGACATATAATCAGACAGT 58.907 38.462 0.00 0.00 0.00 3.55
871 1078 7.600375 CGGCTTATGACATATAATCAGACAGTT 59.400 37.037 0.00 0.00 0.00 3.16
872 1079 8.930760 GGCTTATGACATATAATCAGACAGTTC 58.069 37.037 0.00 0.00 0.00 3.01
873 1080 8.642885 GCTTATGACATATAATCAGACAGTTCG 58.357 37.037 0.00 0.00 0.00 3.95
874 1081 8.520835 TTATGACATATAATCAGACAGTTCGC 57.479 34.615 0.00 0.00 0.00 4.70
875 1082 4.976116 TGACATATAATCAGACAGTTCGCG 59.024 41.667 0.00 0.00 0.00 5.87
876 1083 4.299155 ACATATAATCAGACAGTTCGCGG 58.701 43.478 6.13 0.00 0.00 6.46
877 1084 2.961526 ATAATCAGACAGTTCGCGGT 57.038 45.000 6.13 0.00 0.00 5.68
878 1085 2.736144 TAATCAGACAGTTCGCGGTT 57.264 45.000 6.13 0.00 0.00 4.44
879 1086 1.429463 AATCAGACAGTTCGCGGTTC 58.571 50.000 6.13 0.00 0.00 3.62
880 1087 0.317160 ATCAGACAGTTCGCGGTTCA 59.683 50.000 6.13 0.00 0.00 3.18
881 1088 0.103390 TCAGACAGTTCGCGGTTCAA 59.897 50.000 6.13 0.00 0.00 2.69
882 1089 1.148310 CAGACAGTTCGCGGTTCAAT 58.852 50.000 6.13 0.00 0.00 2.57
883 1090 1.126846 CAGACAGTTCGCGGTTCAATC 59.873 52.381 6.13 0.00 0.00 2.67
884 1091 0.442699 GACAGTTCGCGGTTCAATCC 59.557 55.000 6.13 0.00 0.00 3.01
899 1106 7.611213 GGTTCAATCCGATCTTTTAGAAAGA 57.389 36.000 5.67 5.67 0.00 2.52
900 1107 8.214721 GGTTCAATCCGATCTTTTAGAAAGAT 57.785 34.615 13.99 13.99 39.53 2.40
901 1108 8.338986 GGTTCAATCCGATCTTTTAGAAAGATC 58.661 37.037 23.73 23.73 45.62 2.75
910 1117 6.727824 TCTTTTAGAAAGATCAGCCGAAAG 57.272 37.500 0.00 0.00 0.00 2.62
911 1118 6.464222 TCTTTTAGAAAGATCAGCCGAAAGA 58.536 36.000 0.00 1.26 0.00 2.52
912 1119 6.369065 TCTTTTAGAAAGATCAGCCGAAAGAC 59.631 38.462 0.00 0.00 0.00 3.01
913 1120 2.979240 AGAAAGATCAGCCGAAAGACC 58.021 47.619 0.00 0.00 0.00 3.85
914 1121 2.303022 AGAAAGATCAGCCGAAAGACCA 59.697 45.455 0.00 0.00 0.00 4.02
915 1122 2.393271 AAGATCAGCCGAAAGACCAG 57.607 50.000 0.00 0.00 0.00 4.00
916 1123 0.107945 AGATCAGCCGAAAGACCAGC 60.108 55.000 0.00 0.00 0.00 4.85
917 1124 1.078143 ATCAGCCGAAAGACCAGCC 60.078 57.895 0.00 0.00 0.00 4.85
918 1125 2.859273 ATCAGCCGAAAGACCAGCCG 62.859 60.000 0.00 0.00 0.00 5.52
919 1126 4.394712 AGCCGAAAGACCAGCCGG 62.395 66.667 0.00 0.00 44.34 6.13
923 1130 4.388499 GAAAGACCAGCCGGCGGA 62.388 66.667 33.94 0.00 34.57 5.54
924 1131 4.699522 AAAGACCAGCCGGCGGAC 62.700 66.667 33.94 28.73 34.57 4.79
929 1136 3.598715 CCAGCCGGCGGACGTATA 61.599 66.667 33.44 0.00 42.24 1.47
930 1137 2.050351 CAGCCGGCGGACGTATAG 60.050 66.667 33.44 6.18 42.24 1.31
931 1138 3.974757 AGCCGGCGGACGTATAGC 61.975 66.667 33.44 11.67 42.24 2.97
932 1139 4.274700 GCCGGCGGACGTATAGCA 62.275 66.667 33.44 0.00 42.24 3.49
933 1140 2.354305 CCGGCGGACGTATAGCAC 60.354 66.667 24.41 1.35 42.24 4.40
941 1148 4.524869 CGTATAGCACGCCCCAAA 57.475 55.556 0.00 0.00 45.03 3.28
942 1149 2.011453 CGTATAGCACGCCCCAAAC 58.989 57.895 0.00 0.00 45.03 2.93
950 1157 0.602372 CACGCCCCAAACCCAAATTG 60.602 55.000 0.00 0.00 0.00 2.32
962 1169 6.405286 CCAAACCCAAATTGTATAGCAATCGA 60.405 38.462 0.00 0.00 46.29 3.59
980 1188 2.235402 TCGACTATTTGTCCCCTTCCAC 59.765 50.000 0.00 0.00 42.49 4.02
1002 1210 1.336440 CCTACTCTCAGCCGTCAGATG 59.664 57.143 0.00 0.00 0.00 2.90
1068 1276 2.826003 AAAAACTCCCCTCCGCGGT 61.826 57.895 27.15 0.00 0.00 5.68
1305 1513 4.097361 GCAACCTCCCCGTCTCCC 62.097 72.222 0.00 0.00 0.00 4.30
1590 1798 1.845809 CTTGGAACACAGTGCTCGGC 61.846 60.000 0.00 0.00 39.29 5.54
1779 1987 4.206477 TGTGACATGGAACTCGATGATT 57.794 40.909 8.49 0.00 35.90 2.57
1931 2139 2.512885 GAAGCTGTTTGATGTGATGCG 58.487 47.619 0.00 0.00 0.00 4.73
1994 2202 2.989824 ACAGGCTGGACGCTACGT 60.990 61.111 20.34 0.00 45.10 3.57
2254 2462 4.826274 CACTCCTTGGACCAGAAGAATA 57.174 45.455 0.00 0.00 0.00 1.75
2260 2468 4.410228 CCTTGGACCAGAAGAATATCTCCA 59.590 45.833 0.00 0.00 0.00 3.86
2320 2528 2.198827 TGTTCAGGATTGCATCGGTT 57.801 45.000 0.00 0.00 0.00 4.44
2424 2632 2.050350 GGTGGATGAGGGTCGACGA 61.050 63.158 9.92 0.00 0.00 4.20
2448 2656 4.017380 CTTTCAGAGCATGTCATCTTGC 57.983 45.455 0.00 0.00 42.56 4.01
2689 2903 4.700700 CTGCCATGTCTTGATATCAGACA 58.299 43.478 26.22 26.22 45.07 3.41
2815 3029 6.558771 AGGTTTGAATTTATTGCAAAAGCC 57.441 33.333 1.71 2.71 33.80 4.35
2816 3030 6.298361 AGGTTTGAATTTATTGCAAAAGCCT 58.702 32.000 1.71 5.26 33.80 4.58
2817 3031 7.449247 AGGTTTGAATTTATTGCAAAAGCCTA 58.551 30.769 1.71 0.00 33.80 3.93
2818 3032 7.936301 AGGTTTGAATTTATTGCAAAAGCCTAA 59.064 29.630 1.71 0.00 33.80 2.69
2819 3033 8.229811 GGTTTGAATTTATTGCAAAAGCCTAAG 58.770 33.333 1.71 0.00 33.80 2.18
2820 3034 7.903995 TTGAATTTATTGCAAAAGCCTAAGG 57.096 32.000 1.71 0.00 0.00 2.69
2830 3044 2.506472 GCCTAAGGCCCTTCCGAG 59.494 66.667 0.00 0.00 44.06 4.63
2831 3045 2.368011 GCCTAAGGCCCTTCCGAGT 61.368 63.158 0.00 0.00 44.06 4.18
2832 3046 1.522569 CCTAAGGCCCTTCCGAGTG 59.477 63.158 0.00 0.00 40.77 3.51
2833 3047 1.153349 CTAAGGCCCTTCCGAGTGC 60.153 63.158 0.00 0.00 40.77 4.40
2834 3048 1.612442 TAAGGCCCTTCCGAGTGCT 60.612 57.895 0.00 0.00 40.77 4.40
2835 3049 1.614241 TAAGGCCCTTCCGAGTGCTC 61.614 60.000 0.00 0.00 40.77 4.26
2836 3050 4.475135 GGCCCTTCCGAGTGCTCC 62.475 72.222 0.00 0.00 0.00 4.70
2837 3051 3.706373 GCCCTTCCGAGTGCTCCA 61.706 66.667 0.00 0.00 0.00 3.86
2838 3052 2.266055 CCCTTCCGAGTGCTCCAC 59.734 66.667 0.00 0.00 34.10 4.02
2839 3053 2.266055 CCTTCCGAGTGCTCCACC 59.734 66.667 0.00 0.00 34.49 4.61
2840 3054 2.583441 CCTTCCGAGTGCTCCACCA 61.583 63.158 0.00 0.00 34.49 4.17
2841 3055 1.599047 CTTCCGAGTGCTCCACCAT 59.401 57.895 0.00 0.00 34.49 3.55
2842 3056 0.742281 CTTCCGAGTGCTCCACCATG 60.742 60.000 0.00 0.00 34.49 3.66
2843 3057 2.124983 CCGAGTGCTCCACCATGG 60.125 66.667 11.19 11.19 39.43 3.66
2844 3058 2.659063 CCGAGTGCTCCACCATGGA 61.659 63.158 21.47 0.00 45.98 3.41
2845 3059 1.448540 CGAGTGCTCCACCATGGAC 60.449 63.158 21.47 4.60 42.67 4.02
2846 3060 1.679311 GAGTGCTCCACCATGGACA 59.321 57.895 21.47 5.41 42.67 4.02
2847 3061 0.392193 GAGTGCTCCACCATGGACAG 60.392 60.000 21.47 11.66 42.67 3.51
2848 3062 1.377725 GTGCTCCACCATGGACAGG 60.378 63.158 21.47 16.89 42.67 4.00
2849 3063 1.847506 TGCTCCACCATGGACAGGT 60.848 57.895 21.47 0.00 42.67 4.00
2856 3070 0.035056 ACCATGGACAGGTGCTAAGC 60.035 55.000 21.47 0.00 38.13 3.09
2857 3071 0.035152 CCATGGACAGGTGCTAAGCA 60.035 55.000 5.56 0.00 35.60 3.91
2858 3072 1.409241 CCATGGACAGGTGCTAAGCAT 60.409 52.381 5.56 0.00 41.91 3.79
2859 3073 1.674441 CATGGACAGGTGCTAAGCATG 59.326 52.381 0.00 0.00 41.91 4.06
2860 3074 0.677731 TGGACAGGTGCTAAGCATGC 60.678 55.000 10.51 10.51 41.91 4.06
2861 3075 1.379642 GGACAGGTGCTAAGCATGCC 61.380 60.000 15.66 0.00 41.91 4.40
2862 3076 0.677731 GACAGGTGCTAAGCATGCCA 60.678 55.000 15.66 1.49 41.91 4.92
2863 3077 0.962356 ACAGGTGCTAAGCATGCCAC 60.962 55.000 15.66 14.84 41.91 5.01
2864 3078 0.961857 CAGGTGCTAAGCATGCCACA 60.962 55.000 21.32 10.41 41.91 4.17
2865 3079 0.033796 AGGTGCTAAGCATGCCACAT 60.034 50.000 21.32 14.50 41.91 3.21
2866 3080 1.212688 AGGTGCTAAGCATGCCACATA 59.787 47.619 21.32 8.11 41.91 2.29
2867 3081 2.023673 GGTGCTAAGCATGCCACATAA 58.976 47.619 21.32 0.61 41.91 1.90
2868 3082 2.426738 GGTGCTAAGCATGCCACATAAA 59.573 45.455 21.32 0.00 41.91 1.40
2869 3083 3.438360 GTGCTAAGCATGCCACATAAAC 58.562 45.455 15.66 0.82 41.91 2.01
2870 3084 2.097304 TGCTAAGCATGCCACATAAACG 59.903 45.455 15.66 0.00 31.71 3.60
2871 3085 2.354510 GCTAAGCATGCCACATAAACGA 59.645 45.455 15.66 0.00 0.00 3.85
2872 3086 3.181501 GCTAAGCATGCCACATAAACGAA 60.182 43.478 15.66 0.00 0.00 3.85
2873 3087 3.932545 AAGCATGCCACATAAACGAAA 57.067 38.095 15.66 0.00 0.00 3.46
2874 3088 3.932545 AGCATGCCACATAAACGAAAA 57.067 38.095 15.66 0.00 0.00 2.29
2875 3089 4.250116 AGCATGCCACATAAACGAAAAA 57.750 36.364 15.66 0.00 0.00 1.94
2897 3111 7.837202 AAAATGACATGGCATAACATTGAAG 57.163 32.000 16.16 3.79 32.66 3.02
2898 3112 4.987408 TGACATGGCATAACATTGAAGG 57.013 40.909 0.00 0.00 0.00 3.46
2899 3113 4.598022 TGACATGGCATAACATTGAAGGA 58.402 39.130 0.00 0.00 0.00 3.36
2900 3114 4.641541 TGACATGGCATAACATTGAAGGAG 59.358 41.667 0.00 0.00 0.00 3.69
2901 3115 3.956199 ACATGGCATAACATTGAAGGAGG 59.044 43.478 0.00 0.00 0.00 4.30
2902 3116 3.017048 TGGCATAACATTGAAGGAGGG 57.983 47.619 0.00 0.00 0.00 4.30
2903 3117 2.310538 GGCATAACATTGAAGGAGGGG 58.689 52.381 0.00 0.00 0.00 4.79
2904 3118 2.310538 GCATAACATTGAAGGAGGGGG 58.689 52.381 0.00 0.00 0.00 5.40
2920 3134 1.652947 GGGGGAGAGTACTTTGGTGA 58.347 55.000 0.00 0.00 0.00 4.02
2921 3135 1.278413 GGGGGAGAGTACTTTGGTGAC 59.722 57.143 0.00 0.00 0.00 3.67
2922 3136 2.258109 GGGGAGAGTACTTTGGTGACT 58.742 52.381 0.00 0.00 0.00 3.41
2923 3137 2.234168 GGGGAGAGTACTTTGGTGACTC 59.766 54.545 0.00 0.00 39.96 3.36
2924 3138 2.234168 GGGAGAGTACTTTGGTGACTCC 59.766 54.545 13.60 13.60 40.44 3.85
2925 3139 2.897969 GGAGAGTACTTTGGTGACTCCA 59.102 50.000 16.00 0.00 45.60 3.86
2934 3148 1.056660 TGGTGACTCCAGGAAGAACC 58.943 55.000 7.03 7.03 41.93 3.62
2935 3149 1.056660 GGTGACTCCAGGAAGAACCA 58.943 55.000 8.62 0.00 42.04 3.67
2936 3150 1.420138 GGTGACTCCAGGAAGAACCAA 59.580 52.381 8.62 0.00 42.04 3.67
2937 3151 2.040412 GGTGACTCCAGGAAGAACCAAT 59.960 50.000 8.62 0.00 42.04 3.16
2938 3152 3.077359 GTGACTCCAGGAAGAACCAATG 58.923 50.000 0.00 0.00 42.04 2.82
2939 3153 2.087646 GACTCCAGGAAGAACCAATGC 58.912 52.381 0.00 0.00 42.04 3.56
2940 3154 1.272147 ACTCCAGGAAGAACCAATGCC 60.272 52.381 0.00 0.00 42.04 4.40
2941 3155 0.776810 TCCAGGAAGAACCAATGCCA 59.223 50.000 0.00 0.00 42.04 4.92
2942 3156 1.146774 TCCAGGAAGAACCAATGCCAA 59.853 47.619 0.00 0.00 42.04 4.52
2943 3157 1.547372 CCAGGAAGAACCAATGCCAAG 59.453 52.381 0.00 0.00 42.04 3.61
2944 3158 1.067354 CAGGAAGAACCAATGCCAAGC 60.067 52.381 0.00 0.00 42.04 4.01
2945 3159 0.109132 GGAAGAACCAATGCCAAGCG 60.109 55.000 0.00 0.00 38.79 4.68
2946 3160 0.733909 GAAGAACCAATGCCAAGCGC 60.734 55.000 0.00 0.00 38.31 5.92
2947 3161 2.476534 AAGAACCAATGCCAAGCGCG 62.477 55.000 0.00 0.00 42.08 6.86
2948 3162 2.976840 GAACCAATGCCAAGCGCGA 61.977 57.895 12.10 0.00 42.08 5.87
2949 3163 2.855728 GAACCAATGCCAAGCGCGAG 62.856 60.000 12.10 0.00 42.08 5.03
2950 3164 3.126879 CCAATGCCAAGCGCGAGA 61.127 61.111 12.10 0.00 42.08 4.04
2951 3165 2.689785 CCAATGCCAAGCGCGAGAA 61.690 57.895 12.10 0.00 42.08 2.87
2952 3166 1.512734 CAATGCCAAGCGCGAGAAC 60.513 57.895 12.10 0.00 42.08 3.01
2953 3167 2.690778 AATGCCAAGCGCGAGAACC 61.691 57.895 12.10 0.00 42.08 3.62
2954 3168 3.612247 ATGCCAAGCGCGAGAACCT 62.612 57.895 12.10 0.00 42.08 3.50
2955 3169 2.125673 GCCAAGCGCGAGAACCTA 60.126 61.111 12.10 0.00 0.00 3.08
2956 3170 1.521681 GCCAAGCGCGAGAACCTAT 60.522 57.895 12.10 0.00 0.00 2.57
2957 3171 1.766143 GCCAAGCGCGAGAACCTATG 61.766 60.000 12.10 0.00 0.00 2.23
2958 3172 1.638467 CAAGCGCGAGAACCTATGC 59.362 57.895 12.10 0.00 0.00 3.14
2959 3173 1.083806 CAAGCGCGAGAACCTATGCA 61.084 55.000 12.10 0.00 0.00 3.96
2960 3174 0.391130 AAGCGCGAGAACCTATGCAA 60.391 50.000 12.10 0.00 0.00 4.08
2961 3175 0.391130 AGCGCGAGAACCTATGCAAA 60.391 50.000 12.10 0.00 0.00 3.68
2962 3176 0.247695 GCGCGAGAACCTATGCAAAC 60.248 55.000 12.10 0.00 0.00 2.93
2963 3177 0.373716 CGCGAGAACCTATGCAAACC 59.626 55.000 0.00 0.00 0.00 3.27
2964 3178 1.448985 GCGAGAACCTATGCAAACCA 58.551 50.000 0.00 0.00 0.00 3.67
2965 3179 1.130561 GCGAGAACCTATGCAAACCAC 59.869 52.381 0.00 0.00 0.00 4.16
2966 3180 2.699954 CGAGAACCTATGCAAACCACT 58.300 47.619 0.00 0.00 0.00 4.00
2967 3181 3.074412 CGAGAACCTATGCAAACCACTT 58.926 45.455 0.00 0.00 0.00 3.16
2968 3182 4.250464 CGAGAACCTATGCAAACCACTTA 58.750 43.478 0.00 0.00 0.00 2.24
2969 3183 4.693566 CGAGAACCTATGCAAACCACTTAA 59.306 41.667 0.00 0.00 0.00 1.85
2970 3184 5.163854 CGAGAACCTATGCAAACCACTTAAG 60.164 44.000 0.00 0.00 0.00 1.85
2971 3185 5.631119 AGAACCTATGCAAACCACTTAAGT 58.369 37.500 1.12 1.12 0.00 2.24
2972 3186 5.473504 AGAACCTATGCAAACCACTTAAGTG 59.526 40.000 25.79 25.79 45.23 3.16
2990 3204 7.599998 ACTTAAGTGAAATCATTTGACCAATGC 59.400 33.333 7.48 0.00 42.06 3.56
2991 3205 5.471556 AGTGAAATCATTTGACCAATGCA 57.528 34.783 0.00 0.00 42.06 3.96
2992 3206 6.045072 AGTGAAATCATTTGACCAATGCAT 57.955 33.333 0.00 0.00 42.06 3.96
2993 3207 5.872617 AGTGAAATCATTTGACCAATGCATG 59.127 36.000 0.00 0.00 42.06 4.06
2994 3208 5.870433 GTGAAATCATTTGACCAATGCATGA 59.130 36.000 0.00 0.00 42.06 3.07
2995 3209 6.369340 GTGAAATCATTTGACCAATGCATGAA 59.631 34.615 0.00 0.00 42.06 2.57
2996 3210 6.935208 TGAAATCATTTGACCAATGCATGAAA 59.065 30.769 0.00 0.00 42.06 2.69
2997 3211 6.978343 AATCATTTGACCAATGCATGAAAG 57.022 33.333 0.00 0.00 42.06 2.62
2998 3212 5.725325 TCATTTGACCAATGCATGAAAGA 57.275 34.783 0.00 0.00 42.06 2.52
2999 3213 5.472148 TCATTTGACCAATGCATGAAAGAC 58.528 37.500 0.00 0.00 42.06 3.01
3000 3214 5.244402 TCATTTGACCAATGCATGAAAGACT 59.756 36.000 0.00 0.00 42.06 3.24
3001 3215 5.534207 TTTGACCAATGCATGAAAGACTT 57.466 34.783 0.00 0.00 0.00 3.01
3002 3216 5.534207 TTGACCAATGCATGAAAGACTTT 57.466 34.783 0.00 0.00 0.00 2.66
3003 3217 6.647334 TTGACCAATGCATGAAAGACTTTA 57.353 33.333 0.00 0.00 0.00 1.85
3004 3218 6.839124 TGACCAATGCATGAAAGACTTTAT 57.161 33.333 0.00 0.00 0.00 1.40
3005 3219 6.623486 TGACCAATGCATGAAAGACTTTATG 58.377 36.000 0.00 6.70 0.00 1.90
3006 3220 6.209192 TGACCAATGCATGAAAGACTTTATGT 59.791 34.615 0.00 0.00 0.00 2.29
3007 3221 6.392354 ACCAATGCATGAAAGACTTTATGTG 58.608 36.000 0.00 1.87 0.00 3.21
3008 3222 5.290158 CCAATGCATGAAAGACTTTATGTGC 59.710 40.000 17.90 17.90 0.00 4.57
3009 3223 5.909621 ATGCATGAAAGACTTTATGTGCT 57.090 34.783 21.98 11.77 32.87 4.40
3010 3224 7.252708 CAATGCATGAAAGACTTTATGTGCTA 58.747 34.615 21.98 14.05 32.87 3.49
3011 3225 6.816134 TGCATGAAAGACTTTATGTGCTAA 57.184 33.333 21.98 9.00 32.87 3.09
3012 3226 6.611381 TGCATGAAAGACTTTATGTGCTAAC 58.389 36.000 21.98 3.16 32.87 2.34
3013 3227 6.430925 TGCATGAAAGACTTTATGTGCTAACT 59.569 34.615 21.98 0.00 32.87 2.24
3014 3228 6.963805 GCATGAAAGACTTTATGTGCTAACTC 59.036 38.462 17.64 0.00 0.00 3.01
3015 3229 7.361201 GCATGAAAGACTTTATGTGCTAACTCA 60.361 37.037 17.64 3.40 0.00 3.41
3016 3230 8.671921 CATGAAAGACTTTATGTGCTAACTCAT 58.328 33.333 0.00 0.00 34.51 2.90
3017 3231 8.621532 TGAAAGACTTTATGTGCTAACTCATT 57.378 30.769 0.00 0.00 32.48 2.57
3018 3232 9.719355 TGAAAGACTTTATGTGCTAACTCATTA 57.281 29.630 0.00 0.00 32.48 1.90
3030 3244 8.020819 TGTGCTAACTCATTAAATAAAGTGTGC 58.979 33.333 0.00 0.00 0.00 4.57
3031 3245 8.237267 GTGCTAACTCATTAAATAAAGTGTGCT 58.763 33.333 0.00 0.00 0.00 4.40
3032 3246 8.792633 TGCTAACTCATTAAATAAAGTGTGCTT 58.207 29.630 0.00 0.00 36.30 3.91
3036 3250 8.335532 ACTCATTAAATAAAGTGTGCTTAGCA 57.664 30.769 1.39 1.39 33.95 3.49
3037 3251 8.792633 ACTCATTAAATAAAGTGTGCTTAGCAA 58.207 29.630 9.05 0.00 41.47 3.91
3038 3252 8.964420 TCATTAAATAAAGTGTGCTTAGCAAC 57.036 30.769 9.05 9.74 41.47 4.17
3039 3253 8.572185 TCATTAAATAAAGTGTGCTTAGCAACA 58.428 29.630 9.05 6.93 41.47 3.33
3040 3254 9.190858 CATTAAATAAAGTGTGCTTAGCAACAA 57.809 29.630 9.05 0.00 41.47 2.83
3041 3255 9.927668 ATTAAATAAAGTGTGCTTAGCAACAAT 57.072 25.926 9.05 6.21 41.47 2.71
3044 3258 8.970691 AATAAAGTGTGCTTAGCAACAATAAG 57.029 30.769 9.05 0.00 41.47 1.73
3045 3259 6.391227 AAAGTGTGCTTAGCAACAATAAGT 57.609 33.333 9.05 0.00 41.47 2.24
3046 3260 6.391227 AAGTGTGCTTAGCAACAATAAGTT 57.609 33.333 9.05 0.00 41.47 2.66
3047 3261 7.504924 AAGTGTGCTTAGCAACAATAAGTTA 57.495 32.000 9.05 0.00 41.47 2.24
3048 3262 7.504924 AGTGTGCTTAGCAACAATAAGTTAA 57.495 32.000 9.05 0.00 41.47 2.01
3049 3263 7.584987 AGTGTGCTTAGCAACAATAAGTTAAG 58.415 34.615 9.05 0.00 41.47 1.85
3050 3264 6.305638 GTGTGCTTAGCAACAATAAGTTAAGC 59.694 38.462 9.05 12.17 44.16 3.09
3052 3266 6.378582 TGCTTAGCAACAATAAGTTAAGCAC 58.621 36.000 16.14 0.00 46.45 4.40
3053 3267 5.800438 GCTTAGCAACAATAAGTTAAGCACC 59.200 40.000 13.60 0.00 43.71 5.01
3054 3268 6.349363 GCTTAGCAACAATAAGTTAAGCACCT 60.349 38.462 13.60 0.00 43.71 4.00
3055 3269 7.148306 GCTTAGCAACAATAAGTTAAGCACCTA 60.148 37.037 13.60 0.00 43.71 3.08
3056 3270 8.801882 TTAGCAACAATAAGTTAAGCACCTAT 57.198 30.769 0.00 0.00 38.74 2.57
3057 3271 7.088589 AGCAACAATAAGTTAAGCACCTATG 57.911 36.000 0.00 0.00 38.74 2.23
3058 3272 5.743872 GCAACAATAAGTTAAGCACCTATGC 59.256 40.000 0.00 0.00 45.42 3.14
3059 3273 6.624861 GCAACAATAAGTTAAGCACCTATGCA 60.625 38.462 1.61 0.00 46.67 3.96
3060 3274 7.483307 CAACAATAAGTTAAGCACCTATGCAT 58.517 34.615 3.79 3.79 46.67 3.96
3061 3275 7.975616 CAACAATAAGTTAAGCACCTATGCATT 59.024 33.333 3.54 0.00 46.67 3.56
3062 3276 8.190784 AACAATAAGTTAAGCACCTATGCATTC 58.809 33.333 3.54 0.00 46.59 2.67
3069 3283 2.332063 CACCTATGCATTCGGGACTT 57.668 50.000 3.54 0.00 0.00 3.01
3070 3284 1.942657 CACCTATGCATTCGGGACTTG 59.057 52.381 3.54 0.00 0.00 3.16
3071 3285 1.837439 ACCTATGCATTCGGGACTTGA 59.163 47.619 3.54 0.00 0.00 3.02
3072 3286 2.158900 ACCTATGCATTCGGGACTTGAG 60.159 50.000 3.54 0.00 0.00 3.02
3073 3287 2.158900 CCTATGCATTCGGGACTTGAGT 60.159 50.000 3.54 0.00 0.00 3.41
3074 3288 2.496899 ATGCATTCGGGACTTGAGTT 57.503 45.000 0.00 0.00 0.00 3.01
3075 3289 1.522668 TGCATTCGGGACTTGAGTTG 58.477 50.000 0.00 0.00 0.00 3.16
3076 3290 0.169009 GCATTCGGGACTTGAGTTGC 59.831 55.000 0.00 0.00 0.00 4.17
3077 3291 1.813513 CATTCGGGACTTGAGTTGCT 58.186 50.000 0.00 0.00 0.00 3.91
3078 3292 2.935238 GCATTCGGGACTTGAGTTGCTA 60.935 50.000 0.00 0.00 0.00 3.49
3079 3293 3.334691 CATTCGGGACTTGAGTTGCTAA 58.665 45.455 0.00 0.00 0.00 3.09
3080 3294 2.743636 TCGGGACTTGAGTTGCTAAG 57.256 50.000 0.00 0.00 0.00 2.18
3081 3295 1.275291 TCGGGACTTGAGTTGCTAAGG 59.725 52.381 0.00 0.00 0.00 2.69
3082 3296 1.002087 CGGGACTTGAGTTGCTAAGGT 59.998 52.381 0.00 0.00 0.00 3.50
3083 3297 2.232941 CGGGACTTGAGTTGCTAAGGTA 59.767 50.000 0.00 0.00 0.00 3.08
3084 3298 3.118738 CGGGACTTGAGTTGCTAAGGTAT 60.119 47.826 0.00 0.00 0.00 2.73
3085 3299 4.623171 CGGGACTTGAGTTGCTAAGGTATT 60.623 45.833 0.00 0.00 0.00 1.89
3086 3300 5.254115 GGGACTTGAGTTGCTAAGGTATTT 58.746 41.667 0.00 0.00 0.00 1.40
3087 3301 6.412214 GGGACTTGAGTTGCTAAGGTATTTA 58.588 40.000 0.00 0.00 0.00 1.40
3088 3302 6.882678 GGGACTTGAGTTGCTAAGGTATTTAA 59.117 38.462 0.00 0.00 0.00 1.52
3089 3303 7.556635 GGGACTTGAGTTGCTAAGGTATTTAAT 59.443 37.037 0.00 0.00 0.00 1.40
3090 3304 8.398665 GGACTTGAGTTGCTAAGGTATTTAATG 58.601 37.037 0.00 0.00 0.00 1.90
3091 3305 7.762382 ACTTGAGTTGCTAAGGTATTTAATGC 58.238 34.615 0.00 0.00 0.00 3.56
3092 3306 7.393234 ACTTGAGTTGCTAAGGTATTTAATGCA 59.607 33.333 0.00 0.00 0.00 3.96
3093 3307 7.880160 TGAGTTGCTAAGGTATTTAATGCAT 57.120 32.000 0.00 0.00 0.00 3.96
3094 3308 8.292444 TGAGTTGCTAAGGTATTTAATGCATT 57.708 30.769 17.56 17.56 0.00 3.56
3095 3309 8.748412 TGAGTTGCTAAGGTATTTAATGCATTT 58.252 29.630 18.75 1.86 0.00 2.32
3098 3312 8.968242 GTTGCTAAGGTATTTAATGCATTTAGC 58.032 33.333 18.75 20.05 45.96 3.09
3112 3326 5.818136 GCATTTAGCACCTCATCTAAACA 57.182 39.130 0.00 0.00 44.79 2.83
3113 3327 5.573146 GCATTTAGCACCTCATCTAAACAC 58.427 41.667 0.00 0.00 44.79 3.32
3114 3328 5.449177 GCATTTAGCACCTCATCTAAACACC 60.449 44.000 0.00 0.00 44.79 4.16
3115 3329 5.499004 TTTAGCACCTCATCTAAACACCT 57.501 39.130 0.00 0.00 31.89 4.00
3116 3330 5.499004 TTAGCACCTCATCTAAACACCTT 57.501 39.130 0.00 0.00 0.00 3.50
3117 3331 4.373156 AGCACCTCATCTAAACACCTTT 57.627 40.909 0.00 0.00 0.00 3.11
3118 3332 4.074970 AGCACCTCATCTAAACACCTTTG 58.925 43.478 0.00 0.00 0.00 2.77
3119 3333 3.366374 GCACCTCATCTAAACACCTTTGC 60.366 47.826 0.00 0.00 0.00 3.68
3120 3334 3.820467 CACCTCATCTAAACACCTTTGCA 59.180 43.478 0.00 0.00 0.00 4.08
3121 3335 4.460382 CACCTCATCTAAACACCTTTGCAT 59.540 41.667 0.00 0.00 0.00 3.96
3122 3336 5.047802 CACCTCATCTAAACACCTTTGCATT 60.048 40.000 0.00 0.00 0.00 3.56
3123 3337 5.047802 ACCTCATCTAAACACCTTTGCATTG 60.048 40.000 0.00 0.00 0.00 2.82
3124 3338 5.389859 TCATCTAAACACCTTTGCATTGG 57.610 39.130 4.20 4.20 0.00 3.16
3125 3339 5.076182 TCATCTAAACACCTTTGCATTGGA 58.924 37.500 11.80 0.00 0.00 3.53
3126 3340 5.538053 TCATCTAAACACCTTTGCATTGGAA 59.462 36.000 11.80 0.00 0.00 3.53
3127 3341 5.452078 TCTAAACACCTTTGCATTGGAAG 57.548 39.130 11.80 0.91 0.00 3.46
3128 3342 5.136828 TCTAAACACCTTTGCATTGGAAGA 58.863 37.500 11.80 4.64 0.00 2.87
3129 3343 4.326504 AAACACCTTTGCATTGGAAGAG 57.673 40.909 11.80 0.84 0.00 2.85
3130 3344 2.242043 ACACCTTTGCATTGGAAGAGG 58.758 47.619 11.80 13.56 0.00 3.69
3131 3345 2.242043 CACCTTTGCATTGGAAGAGGT 58.758 47.619 14.47 14.47 37.98 3.85
3233 3447 8.293699 AGAAATTTCTGTTAAAAGTGTGAGGT 57.706 30.769 19.86 0.00 35.89 3.85
3234 3448 8.406297 AGAAATTTCTGTTAAAAGTGTGAGGTC 58.594 33.333 19.86 0.00 35.89 3.85
3235 3449 6.635030 ATTTCTGTTAAAAGTGTGAGGTCC 57.365 37.500 0.00 0.00 0.00 4.46
3236 3450 5.367945 TTCTGTTAAAAGTGTGAGGTCCT 57.632 39.130 0.00 0.00 0.00 3.85
3237 3451 4.957296 TCTGTTAAAAGTGTGAGGTCCTC 58.043 43.478 12.40 12.40 0.00 3.71
3238 3452 4.654262 TCTGTTAAAAGTGTGAGGTCCTCT 59.346 41.667 19.82 0.14 0.00 3.69
3239 3453 5.836898 TCTGTTAAAAGTGTGAGGTCCTCTA 59.163 40.000 19.82 6.39 0.00 2.43
3336 3550 2.080286 TAACCGTTTCTCTGCTCTGC 57.920 50.000 0.00 0.00 0.00 4.26
3504 3718 5.165961 TGATCTGGTTCTTTTCGATCCTT 57.834 39.130 0.00 0.00 33.44 3.36
3513 3727 6.403746 GGTTCTTTTCGATCCTTCTGAATTCC 60.404 42.308 2.27 0.00 0.00 3.01
3528 3774 8.592105 TTCTGAATTCCAAGCAAAAATTAGTG 57.408 30.769 2.27 0.00 0.00 2.74
3539 3785 4.511082 GCAAAAATTAGTGAGGCTGCAAAA 59.489 37.500 0.50 0.00 0.00 2.44
3649 4064 5.832060 GGATGTCTGAGGGAAAATCATTGAT 59.168 40.000 0.00 0.00 0.00 2.57
3740 4181 8.041323 ACGTATTCATCCAGAATTGTACTTTCT 58.959 33.333 5.99 5.99 44.48 2.52
3747 4188 8.660373 CATCCAGAATTGTACTTTCTAACTGAC 58.340 37.037 10.16 0.00 32.27 3.51
3761 4202 5.129634 TCTAACTGACAAATTCCTGCAACA 58.870 37.500 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.661537 CGTCACACGCTCAAGGCA 60.662 61.111 0.00 0.00 41.91 4.75
87 90 1.982913 GCGGAAGGTATTTTTGCAACG 59.017 47.619 0.00 0.00 0.00 4.10
145 153 0.041312 AACACGCGTCTTGTTGCATC 60.041 50.000 9.86 0.00 35.82 3.91
329 346 0.738975 CGGATCTCGTGGCTTAGTGA 59.261 55.000 0.00 0.00 0.00 3.41
352 417 4.857037 GCGTGCGAATCTTTTTAAAGGATT 59.143 37.500 13.59 13.59 36.67 3.01
447 620 0.036732 GAGTCAGGGGCACATGTCAA 59.963 55.000 0.00 0.00 0.00 3.18
641 839 3.686241 GTCGGAACCGCTATTTACCTTTT 59.314 43.478 8.48 0.00 39.59 2.27
671 869 3.786809 CTGCAACAGGATGCTTGTG 57.213 52.632 3.22 0.00 46.54 3.33
699 898 1.358759 CAACAAGGACGGTGTTGCC 59.641 57.895 4.52 0.00 46.63 4.52
709 908 2.430332 CACCTTCCTTTTGCAACAAGGA 59.570 45.455 26.07 26.07 46.81 3.36
733 940 2.027561 TCCGATTAACCCACTCACAAGG 60.028 50.000 0.00 0.00 0.00 3.61
793 1000 2.835764 ACCGGTAGCTAGAAAACATCCA 59.164 45.455 4.49 0.00 0.00 3.41
834 1041 4.075682 TGTCATAAGCCGTTTGATTTGGA 58.924 39.130 0.00 0.00 0.00 3.53
840 1047 8.147704 TCTGATTATATGTCATAAGCCGTTTGA 58.852 33.333 0.00 0.00 0.00 2.69
841 1048 8.223769 GTCTGATTATATGTCATAAGCCGTTTG 58.776 37.037 0.00 0.00 0.00 2.93
844 1051 6.993079 TGTCTGATTATATGTCATAAGCCGT 58.007 36.000 0.00 0.00 0.00 5.68
845 1052 7.093354 ACTGTCTGATTATATGTCATAAGCCG 58.907 38.462 0.00 0.00 0.00 5.52
846 1053 8.839310 AACTGTCTGATTATATGTCATAAGCC 57.161 34.615 0.00 0.00 0.00 4.35
847 1054 8.642885 CGAACTGTCTGATTATATGTCATAAGC 58.357 37.037 0.00 0.00 0.00 3.09
848 1055 8.642885 GCGAACTGTCTGATTATATGTCATAAG 58.357 37.037 0.00 0.00 0.00 1.73
849 1056 7.326063 CGCGAACTGTCTGATTATATGTCATAA 59.674 37.037 0.00 0.00 0.00 1.90
850 1057 6.801862 CGCGAACTGTCTGATTATATGTCATA 59.198 38.462 0.00 0.00 0.00 2.15
851 1058 5.631096 CGCGAACTGTCTGATTATATGTCAT 59.369 40.000 0.00 0.00 0.00 3.06
852 1059 4.976116 CGCGAACTGTCTGATTATATGTCA 59.024 41.667 0.00 0.00 0.00 3.58
853 1060 4.383052 CCGCGAACTGTCTGATTATATGTC 59.617 45.833 8.23 0.00 0.00 3.06
854 1061 4.202121 ACCGCGAACTGTCTGATTATATGT 60.202 41.667 8.23 0.00 0.00 2.29
855 1062 4.299155 ACCGCGAACTGTCTGATTATATG 58.701 43.478 8.23 0.00 0.00 1.78
856 1063 4.585955 ACCGCGAACTGTCTGATTATAT 57.414 40.909 8.23 0.00 0.00 0.86
857 1064 4.142337 TGAACCGCGAACTGTCTGATTATA 60.142 41.667 8.23 0.00 0.00 0.98
858 1065 2.961526 ACCGCGAACTGTCTGATTAT 57.038 45.000 8.23 0.00 0.00 1.28
859 1066 2.029739 TGAACCGCGAACTGTCTGATTA 60.030 45.455 8.23 0.00 0.00 1.75
860 1067 1.270094 TGAACCGCGAACTGTCTGATT 60.270 47.619 8.23 0.00 0.00 2.57
861 1068 0.317160 TGAACCGCGAACTGTCTGAT 59.683 50.000 8.23 0.00 0.00 2.90
862 1069 0.103390 TTGAACCGCGAACTGTCTGA 59.897 50.000 8.23 0.00 0.00 3.27
863 1070 1.126846 GATTGAACCGCGAACTGTCTG 59.873 52.381 8.23 0.00 0.00 3.51
864 1071 1.429463 GATTGAACCGCGAACTGTCT 58.571 50.000 8.23 0.00 0.00 3.41
865 1072 0.442699 GGATTGAACCGCGAACTGTC 59.557 55.000 8.23 0.00 0.00 3.51
866 1073 1.289109 CGGATTGAACCGCGAACTGT 61.289 55.000 8.23 0.00 46.20 3.55
867 1074 1.419922 CGGATTGAACCGCGAACTG 59.580 57.895 8.23 0.00 46.20 3.16
868 1075 3.870606 CGGATTGAACCGCGAACT 58.129 55.556 8.23 0.00 46.20 3.01
875 1082 7.611213 TCTTTCTAAAAGATCGGATTGAACC 57.389 36.000 0.00 0.00 0.00 3.62
886 1093 7.065204 GTCTTTCGGCTGATCTTTCTAAAAGAT 59.935 37.037 13.31 13.31 39.53 2.40
887 1094 6.369065 GTCTTTCGGCTGATCTTTCTAAAAGA 59.631 38.462 0.00 4.72 0.00 2.52
888 1095 6.402658 GGTCTTTCGGCTGATCTTTCTAAAAG 60.403 42.308 0.00 0.00 0.00 2.27
889 1096 5.411669 GGTCTTTCGGCTGATCTTTCTAAAA 59.588 40.000 0.00 0.00 0.00 1.52
890 1097 4.935808 GGTCTTTCGGCTGATCTTTCTAAA 59.064 41.667 0.00 0.00 0.00 1.85
891 1098 4.020573 TGGTCTTTCGGCTGATCTTTCTAA 60.021 41.667 0.00 0.00 0.00 2.10
892 1099 3.513912 TGGTCTTTCGGCTGATCTTTCTA 59.486 43.478 0.00 0.00 0.00 2.10
893 1100 2.303022 TGGTCTTTCGGCTGATCTTTCT 59.697 45.455 0.00 0.00 0.00 2.52
894 1101 2.675348 CTGGTCTTTCGGCTGATCTTTC 59.325 50.000 0.00 0.00 0.00 2.62
895 1102 2.704572 CTGGTCTTTCGGCTGATCTTT 58.295 47.619 0.00 0.00 0.00 2.52
896 1103 1.677217 GCTGGTCTTTCGGCTGATCTT 60.677 52.381 0.00 0.00 36.19 2.40
897 1104 0.107945 GCTGGTCTTTCGGCTGATCT 60.108 55.000 0.00 0.00 36.19 2.75
898 1105 1.092345 GGCTGGTCTTTCGGCTGATC 61.092 60.000 0.00 0.00 38.94 2.92
899 1106 1.078143 GGCTGGTCTTTCGGCTGAT 60.078 57.895 0.00 0.00 38.94 2.90
900 1107 2.347490 GGCTGGTCTTTCGGCTGA 59.653 61.111 0.00 0.00 38.94 4.26
901 1108 3.121030 CGGCTGGTCTTTCGGCTG 61.121 66.667 0.00 0.00 38.94 4.85
902 1109 4.394712 CCGGCTGGTCTTTCGGCT 62.395 66.667 2.29 0.00 38.94 5.52
906 1113 4.388499 TCCGCCGGCTGGTCTTTC 62.388 66.667 28.39 0.00 37.67 2.62
907 1114 4.699522 GTCCGCCGGCTGGTCTTT 62.700 66.667 28.39 0.00 37.67 2.52
912 1119 3.553437 CTATACGTCCGCCGGCTGG 62.553 68.421 26.68 25.95 42.24 4.85
913 1120 2.050351 CTATACGTCCGCCGGCTG 60.050 66.667 26.68 19.63 42.24 4.85
914 1121 3.974757 GCTATACGTCCGCCGGCT 61.975 66.667 26.68 7.77 42.24 5.52
915 1122 4.274700 TGCTATACGTCCGCCGGC 62.275 66.667 19.07 19.07 42.24 6.13
916 1123 2.354305 GTGCTATACGTCCGCCGG 60.354 66.667 0.00 0.00 42.24 6.13
925 1132 1.099295 GGGTTTGGGGCGTGCTATAC 61.099 60.000 0.00 0.00 0.00 1.47
926 1133 1.225148 GGGTTTGGGGCGTGCTATA 59.775 57.895 0.00 0.00 0.00 1.31
927 1134 2.044352 GGGTTTGGGGCGTGCTAT 60.044 61.111 0.00 0.00 0.00 2.97
928 1135 2.642183 TTTGGGTTTGGGGCGTGCTA 62.642 55.000 0.00 0.00 0.00 3.49
929 1136 4.531426 TTGGGTTTGGGGCGTGCT 62.531 61.111 0.00 0.00 0.00 4.40
930 1137 2.390306 AATTTGGGTTTGGGGCGTGC 62.390 55.000 0.00 0.00 0.00 5.34
931 1138 0.602372 CAATTTGGGTTTGGGGCGTG 60.602 55.000 0.00 0.00 0.00 5.34
932 1139 1.051556 ACAATTTGGGTTTGGGGCGT 61.052 50.000 0.78 0.00 0.00 5.68
933 1140 0.969894 TACAATTTGGGTTTGGGGCG 59.030 50.000 0.78 0.00 0.00 6.13
934 1141 3.431626 GCTATACAATTTGGGTTTGGGGC 60.432 47.826 0.78 0.00 0.00 5.80
935 1142 3.772025 TGCTATACAATTTGGGTTTGGGG 59.228 43.478 0.78 0.00 0.00 4.96
936 1143 5.413309 TTGCTATACAATTTGGGTTTGGG 57.587 39.130 0.78 0.00 31.73 4.12
962 1169 2.041216 GGTGTGGAAGGGGACAAATAGT 59.959 50.000 0.00 0.00 0.00 2.12
980 1188 0.453793 CTGACGGCTGAGAGTAGGTG 59.546 60.000 0.00 0.00 0.00 4.00
1002 1210 3.119495 ACAAGCTTAACCATTCGATTGGC 60.119 43.478 23.04 10.84 40.68 4.52
1068 1276 1.069358 GCCATTCCGTTTTGGGTTTGA 59.931 47.619 0.00 0.00 38.76 2.69
1074 1282 1.080839 CGGTGCCATTCCGTTTTGG 60.081 57.895 0.00 0.00 42.62 3.28
1185 1393 3.882670 TGGGGGTGGGAAGGGAGT 61.883 66.667 0.00 0.00 0.00 3.85
1352 1560 0.248289 GAAGGTGAATCGGTCGGGAA 59.752 55.000 0.00 0.00 0.00 3.97
1581 1789 3.461773 ACATAGCCGCCGAGCACT 61.462 61.111 0.70 0.00 34.23 4.40
1590 1798 2.173669 CCCGCACTTCACATAGCCG 61.174 63.158 0.00 0.00 0.00 5.52
1636 1844 0.038166 TTCCTCTGCGGCATTTCCTT 59.962 50.000 1.75 0.00 0.00 3.36
1779 1987 3.439513 ATGCCGCGCGAATCCTGTA 62.440 57.895 34.63 13.54 0.00 2.74
1872 2080 2.112815 GTTCACTGCATACCCCCGC 61.113 63.158 0.00 0.00 0.00 6.13
1931 2139 3.084786 CAGGAAACCACATCTTTCTCCC 58.915 50.000 0.00 0.00 0.00 4.30
1994 2202 1.214175 TGAACAGCTCAAGGGTTTCCA 59.786 47.619 0.00 0.00 34.83 3.53
2254 2462 1.211457 GAGTGCATTCCAGGTGGAGAT 59.789 52.381 0.00 0.00 46.36 2.75
2260 2468 1.632409 AGTGATGAGTGCATTCCAGGT 59.368 47.619 6.77 0.00 34.11 4.00
2320 2528 4.067896 GACCTCTTCATCTGCTCAAACAA 58.932 43.478 0.00 0.00 0.00 2.83
2815 3029 1.153349 GCACTCGGAAGGGCCTTAG 60.153 63.158 20.97 15.82 46.90 2.18
2816 3030 2.987125 GCACTCGGAAGGGCCTTA 59.013 61.111 20.97 2.36 46.90 2.69
2821 3035 2.266055 GTGGAGCACTCGGAAGGG 59.734 66.667 0.00 0.00 37.84 3.95
2822 3036 1.903877 ATGGTGGAGCACTCGGAAGG 61.904 60.000 0.00 0.00 34.40 3.46
2823 3037 0.742281 CATGGTGGAGCACTCGGAAG 60.742 60.000 0.00 0.00 34.40 3.46
2824 3038 1.296392 CATGGTGGAGCACTCGGAA 59.704 57.895 0.00 0.00 34.40 4.30
2825 3039 2.659063 CCATGGTGGAGCACTCGGA 61.659 63.158 2.57 0.00 40.96 4.55
2826 3040 2.124983 CCATGGTGGAGCACTCGG 60.125 66.667 2.57 0.00 40.96 4.63
2827 3041 2.981302 TCCATGGTGGAGCACTCG 59.019 61.111 12.58 0.00 42.67 4.18
2837 3051 0.035056 GCTTAGCACCTGTCCATGGT 60.035 55.000 12.58 0.00 38.53 3.55
2838 3052 0.035152 TGCTTAGCACCTGTCCATGG 60.035 55.000 4.97 4.97 31.71 3.66
2839 3053 1.674441 CATGCTTAGCACCTGTCCATG 59.326 52.381 9.82 0.00 43.04 3.66
2840 3054 2.020694 GCATGCTTAGCACCTGTCCAT 61.021 52.381 9.82 0.00 43.04 3.41
2841 3055 0.677731 GCATGCTTAGCACCTGTCCA 60.678 55.000 9.82 0.00 43.04 4.02
2842 3056 1.379642 GGCATGCTTAGCACCTGTCC 61.380 60.000 18.92 7.22 43.04 4.02
2843 3057 0.677731 TGGCATGCTTAGCACCTGTC 60.678 55.000 18.92 7.31 43.04 3.51
2844 3058 0.962356 GTGGCATGCTTAGCACCTGT 60.962 55.000 18.92 0.00 43.04 4.00
2845 3059 0.961857 TGTGGCATGCTTAGCACCTG 60.962 55.000 18.92 6.22 43.04 4.00
2846 3060 0.033796 ATGTGGCATGCTTAGCACCT 60.034 50.000 18.92 7.18 43.04 4.00
2847 3061 1.679139 TATGTGGCATGCTTAGCACC 58.321 50.000 18.92 8.08 43.04 5.01
2848 3062 3.438360 GTTTATGTGGCATGCTTAGCAC 58.562 45.455 18.92 16.85 43.04 4.40
2849 3063 2.097304 CGTTTATGTGGCATGCTTAGCA 59.903 45.455 18.92 10.09 44.86 3.49
2850 3064 2.354510 TCGTTTATGTGGCATGCTTAGC 59.645 45.455 18.92 0.00 0.00 3.09
2851 3065 4.614555 TTCGTTTATGTGGCATGCTTAG 57.385 40.909 18.92 0.00 0.00 2.18
2852 3066 5.378292 TTTTCGTTTATGTGGCATGCTTA 57.622 34.783 18.92 4.21 0.00 3.09
2853 3067 3.932545 TTTCGTTTATGTGGCATGCTT 57.067 38.095 18.92 3.00 0.00 3.91
2854 3068 3.932545 TTTTCGTTTATGTGGCATGCT 57.067 38.095 18.92 0.00 0.00 3.79
2872 3086 7.334921 CCTTCAATGTTATGCCATGTCATTTTT 59.665 33.333 0.00 0.00 0.00 1.94
2873 3087 6.819649 CCTTCAATGTTATGCCATGTCATTTT 59.180 34.615 0.00 0.00 0.00 1.82
2874 3088 6.154877 TCCTTCAATGTTATGCCATGTCATTT 59.845 34.615 0.00 0.00 0.00 2.32
2875 3089 5.657745 TCCTTCAATGTTATGCCATGTCATT 59.342 36.000 0.00 4.22 0.00 2.57
2876 3090 5.202765 TCCTTCAATGTTATGCCATGTCAT 58.797 37.500 0.00 0.00 0.00 3.06
2877 3091 4.598022 TCCTTCAATGTTATGCCATGTCA 58.402 39.130 0.00 0.00 0.00 3.58
2878 3092 4.037208 CCTCCTTCAATGTTATGCCATGTC 59.963 45.833 0.00 0.00 0.00 3.06
2879 3093 3.956199 CCTCCTTCAATGTTATGCCATGT 59.044 43.478 0.00 0.00 0.00 3.21
2880 3094 3.319972 CCCTCCTTCAATGTTATGCCATG 59.680 47.826 0.00 0.00 0.00 3.66
2881 3095 3.569491 CCCTCCTTCAATGTTATGCCAT 58.431 45.455 0.00 0.00 0.00 4.40
2882 3096 2.358090 CCCCTCCTTCAATGTTATGCCA 60.358 50.000 0.00 0.00 0.00 4.92
2883 3097 2.310538 CCCCTCCTTCAATGTTATGCC 58.689 52.381 0.00 0.00 0.00 4.40
2884 3098 2.310538 CCCCCTCCTTCAATGTTATGC 58.689 52.381 0.00 0.00 0.00 3.14
2901 3115 1.278413 GTCACCAAAGTACTCTCCCCC 59.722 57.143 0.00 0.00 0.00 5.40
2902 3116 2.234168 GAGTCACCAAAGTACTCTCCCC 59.766 54.545 0.00 0.00 37.30 4.81
2903 3117 2.234168 GGAGTCACCAAAGTACTCTCCC 59.766 54.545 11.68 0.00 39.65 4.30
2904 3118 2.897969 TGGAGTCACCAAAGTACTCTCC 59.102 50.000 14.64 14.64 46.75 3.71
2916 3130 1.056660 TGGTTCTTCCTGGAGTCACC 58.943 55.000 11.47 11.47 37.07 4.02
2917 3131 2.930826 TTGGTTCTTCCTGGAGTCAC 57.069 50.000 0.00 0.00 37.07 3.67
2918 3132 2.553028 GCATTGGTTCTTCCTGGAGTCA 60.553 50.000 0.00 0.00 37.07 3.41
2919 3133 2.087646 GCATTGGTTCTTCCTGGAGTC 58.912 52.381 0.00 0.00 37.07 3.36
2920 3134 1.272147 GGCATTGGTTCTTCCTGGAGT 60.272 52.381 0.00 0.00 37.07 3.85
2921 3135 1.272092 TGGCATTGGTTCTTCCTGGAG 60.272 52.381 0.00 0.00 37.07 3.86
2922 3136 0.776810 TGGCATTGGTTCTTCCTGGA 59.223 50.000 0.00 0.00 37.07 3.86
2923 3137 1.547372 CTTGGCATTGGTTCTTCCTGG 59.453 52.381 0.00 0.00 37.07 4.45
2924 3138 1.067354 GCTTGGCATTGGTTCTTCCTG 60.067 52.381 0.00 0.00 37.07 3.86
2925 3139 1.260544 GCTTGGCATTGGTTCTTCCT 58.739 50.000 0.00 0.00 37.07 3.36
2926 3140 0.109132 CGCTTGGCATTGGTTCTTCC 60.109 55.000 0.00 0.00 0.00 3.46
2927 3141 0.733909 GCGCTTGGCATTGGTTCTTC 60.734 55.000 0.00 0.00 42.87 2.87
2928 3142 1.290009 GCGCTTGGCATTGGTTCTT 59.710 52.632 0.00 0.00 42.87 2.52
2929 3143 2.964978 GCGCTTGGCATTGGTTCT 59.035 55.556 0.00 0.00 42.87 3.01
2930 3144 2.504681 CGCGCTTGGCATTGGTTC 60.505 61.111 5.56 0.00 43.84 3.62
2931 3145 2.981560 CTCGCGCTTGGCATTGGTT 61.982 57.895 5.56 0.00 43.84 3.67
2932 3146 3.434319 CTCGCGCTTGGCATTGGT 61.434 61.111 5.56 0.00 43.84 3.67
2933 3147 2.689785 TTCTCGCGCTTGGCATTGG 61.690 57.895 5.56 0.00 43.84 3.16
2934 3148 1.512734 GTTCTCGCGCTTGGCATTG 60.513 57.895 5.56 0.00 43.84 2.82
2935 3149 2.690778 GGTTCTCGCGCTTGGCATT 61.691 57.895 5.56 0.00 43.84 3.56
2936 3150 2.238847 TAGGTTCTCGCGCTTGGCAT 62.239 55.000 5.56 0.00 43.84 4.40
2937 3151 2.238847 ATAGGTTCTCGCGCTTGGCA 62.239 55.000 5.56 0.00 43.84 4.92
2938 3152 1.521681 ATAGGTTCTCGCGCTTGGC 60.522 57.895 5.56 0.00 38.69 4.52
2939 3153 1.766143 GCATAGGTTCTCGCGCTTGG 61.766 60.000 5.56 0.00 0.00 3.61
2940 3154 1.083806 TGCATAGGTTCTCGCGCTTG 61.084 55.000 5.56 0.00 0.00 4.01
2941 3155 0.391130 TTGCATAGGTTCTCGCGCTT 60.391 50.000 5.56 0.00 0.00 4.68
2942 3156 0.391130 TTTGCATAGGTTCTCGCGCT 60.391 50.000 5.56 0.00 0.00 5.92
2943 3157 0.247695 GTTTGCATAGGTTCTCGCGC 60.248 55.000 0.00 0.00 0.00 6.86
2944 3158 0.373716 GGTTTGCATAGGTTCTCGCG 59.626 55.000 0.00 0.00 0.00 5.87
2945 3159 1.130561 GTGGTTTGCATAGGTTCTCGC 59.869 52.381 0.00 0.00 0.00 5.03
2946 3160 2.699954 AGTGGTTTGCATAGGTTCTCG 58.300 47.619 0.00 0.00 0.00 4.04
2947 3161 5.705905 ACTTAAGTGGTTTGCATAGGTTCTC 59.294 40.000 7.48 0.00 0.00 2.87
2948 3162 5.473504 CACTTAAGTGGTTTGCATAGGTTCT 59.526 40.000 25.19 0.00 42.10 3.01
2949 3163 5.472137 TCACTTAAGTGGTTTGCATAGGTTC 59.528 40.000 30.35 0.00 45.65 3.62
2950 3164 5.381757 TCACTTAAGTGGTTTGCATAGGTT 58.618 37.500 30.35 0.00 45.65 3.50
2951 3165 4.980573 TCACTTAAGTGGTTTGCATAGGT 58.019 39.130 30.35 0.00 45.65 3.08
2952 3166 5.957842 TTCACTTAAGTGGTTTGCATAGG 57.042 39.130 30.35 5.44 45.65 2.57
2953 3167 7.592938 TGATTTCACTTAAGTGGTTTGCATAG 58.407 34.615 30.35 5.92 45.65 2.23
2954 3168 7.517614 TGATTTCACTTAAGTGGTTTGCATA 57.482 32.000 30.35 10.06 45.65 3.14
2955 3169 6.403866 TGATTTCACTTAAGTGGTTTGCAT 57.596 33.333 30.35 15.57 45.65 3.96
2956 3170 5.843673 TGATTTCACTTAAGTGGTTTGCA 57.156 34.783 30.35 20.09 45.65 4.08
2957 3171 7.437862 TCAAATGATTTCACTTAAGTGGTTTGC 59.562 33.333 30.35 18.19 45.65 3.68
2958 3172 8.755018 GTCAAATGATTTCACTTAAGTGGTTTG 58.245 33.333 30.35 25.72 45.65 2.93
2959 3173 7.926018 GGTCAAATGATTTCACTTAAGTGGTTT 59.074 33.333 30.35 17.38 45.65 3.27
2960 3174 7.069331 TGGTCAAATGATTTCACTTAAGTGGTT 59.931 33.333 30.35 17.69 45.65 3.67
2961 3175 6.549364 TGGTCAAATGATTTCACTTAAGTGGT 59.451 34.615 30.35 18.85 45.65 4.16
2962 3176 6.980593 TGGTCAAATGATTTCACTTAAGTGG 58.019 36.000 30.35 15.22 45.65 4.00
2978 3192 5.733620 AGTCTTTCATGCATTGGTCAAAT 57.266 34.783 0.00 0.00 0.00 2.32
2979 3193 5.534207 AAGTCTTTCATGCATTGGTCAAA 57.466 34.783 0.00 0.00 0.00 2.69
2980 3194 5.534207 AAAGTCTTTCATGCATTGGTCAA 57.466 34.783 0.00 0.00 0.00 3.18
2981 3195 6.209192 ACATAAAGTCTTTCATGCATTGGTCA 59.791 34.615 0.00 0.00 0.00 4.02
2982 3196 6.529125 CACATAAAGTCTTTCATGCATTGGTC 59.471 38.462 0.00 0.00 0.00 4.02
2983 3197 6.392354 CACATAAAGTCTTTCATGCATTGGT 58.608 36.000 0.00 0.00 0.00 3.67
2984 3198 5.290158 GCACATAAAGTCTTTCATGCATTGG 59.710 40.000 17.29 0.00 0.00 3.16
2985 3199 6.097356 AGCACATAAAGTCTTTCATGCATTG 58.903 36.000 21.33 11.57 34.27 2.82
2986 3200 6.276832 AGCACATAAAGTCTTTCATGCATT 57.723 33.333 21.33 7.33 34.27 3.56
2987 3201 5.909621 AGCACATAAAGTCTTTCATGCAT 57.090 34.783 21.33 0.00 34.27 3.96
2988 3202 6.430925 AGTTAGCACATAAAGTCTTTCATGCA 59.569 34.615 21.33 0.00 34.27 3.96
2989 3203 6.846350 AGTTAGCACATAAAGTCTTTCATGC 58.154 36.000 15.55 15.55 0.00 4.06
2990 3204 8.032952 TGAGTTAGCACATAAAGTCTTTCATG 57.967 34.615 0.00 7.06 0.00 3.07
2991 3205 8.798859 ATGAGTTAGCACATAAAGTCTTTCAT 57.201 30.769 0.00 0.00 0.00 2.57
2992 3206 8.621532 AATGAGTTAGCACATAAAGTCTTTCA 57.378 30.769 0.00 0.00 0.00 2.69
3004 3218 8.020819 GCACACTTTATTTAATGAGTTAGCACA 58.979 33.333 0.00 0.00 0.00 4.57
3005 3219 8.237267 AGCACACTTTATTTAATGAGTTAGCAC 58.763 33.333 13.54 0.00 0.00 4.40
3006 3220 8.335532 AGCACACTTTATTTAATGAGTTAGCA 57.664 30.769 13.54 0.00 0.00 3.49
3010 3224 8.792633 TGCTAAGCACACTTTATTTAATGAGTT 58.207 29.630 0.00 0.00 37.33 3.01
3011 3225 8.335532 TGCTAAGCACACTTTATTTAATGAGT 57.664 30.769 0.00 0.00 37.33 3.41
3012 3226 9.065871 GTTGCTAAGCACACTTTATTTAATGAG 57.934 33.333 0.00 0.00 38.71 2.90
3013 3227 8.572185 TGTTGCTAAGCACACTTTATTTAATGA 58.428 29.630 0.00 0.00 38.71 2.57
3014 3228 8.741101 TGTTGCTAAGCACACTTTATTTAATG 57.259 30.769 0.00 0.00 38.71 1.90
3015 3229 9.927668 ATTGTTGCTAAGCACACTTTATTTAAT 57.072 25.926 0.00 0.00 38.71 1.40
3018 3232 9.410556 CTTATTGTTGCTAAGCACACTTTATTT 57.589 29.630 0.00 0.00 38.71 1.40
3019 3233 8.576442 ACTTATTGTTGCTAAGCACACTTTATT 58.424 29.630 0.00 0.00 38.71 1.40
3020 3234 8.110860 ACTTATTGTTGCTAAGCACACTTTAT 57.889 30.769 0.00 0.00 38.71 1.40
3021 3235 7.504924 ACTTATTGTTGCTAAGCACACTTTA 57.495 32.000 0.00 0.00 38.71 1.85
3022 3236 6.391227 ACTTATTGTTGCTAAGCACACTTT 57.609 33.333 0.00 0.00 38.71 2.66
3023 3237 6.391227 AACTTATTGTTGCTAAGCACACTT 57.609 33.333 0.00 0.00 38.71 3.16
3024 3238 7.504924 TTAACTTATTGTTGCTAAGCACACT 57.495 32.000 0.00 0.00 38.71 3.55
3025 3239 6.305638 GCTTAACTTATTGTTGCTAAGCACAC 59.694 38.462 6.73 0.00 42.66 3.82
3026 3240 6.016693 TGCTTAACTTATTGTTGCTAAGCACA 60.017 34.615 9.59 0.00 45.29 4.57
3027 3241 6.378582 TGCTTAACTTATTGTTGCTAAGCAC 58.621 36.000 9.59 0.00 45.29 4.40
3028 3242 6.378582 GTGCTTAACTTATTGTTGCTAAGCA 58.621 36.000 9.59 9.59 46.65 3.91
3029 3243 5.800438 GGTGCTTAACTTATTGTTGCTAAGC 59.200 40.000 4.99 4.99 43.07 3.09
3030 3244 7.145932 AGGTGCTTAACTTATTGTTGCTAAG 57.854 36.000 0.00 0.00 39.55 2.18
3031 3245 8.673711 CATAGGTGCTTAACTTATTGTTGCTAA 58.326 33.333 0.00 0.00 39.55 3.09
3032 3246 8.208718 CATAGGTGCTTAACTTATTGTTGCTA 57.791 34.615 0.00 0.00 39.55 3.49
3033 3247 7.088589 CATAGGTGCTTAACTTATTGTTGCT 57.911 36.000 0.00 0.00 39.55 3.91
3050 3264 1.942657 CAAGTCCCGAATGCATAGGTG 59.057 52.381 16.90 10.29 0.00 4.00
3051 3265 1.837439 TCAAGTCCCGAATGCATAGGT 59.163 47.619 16.90 0.00 0.00 3.08
3052 3266 2.158900 ACTCAAGTCCCGAATGCATAGG 60.159 50.000 12.75 12.75 0.00 2.57
3053 3267 3.185246 ACTCAAGTCCCGAATGCATAG 57.815 47.619 0.00 0.00 0.00 2.23
3054 3268 3.270027 CAACTCAAGTCCCGAATGCATA 58.730 45.455 0.00 0.00 0.00 3.14
3055 3269 2.086869 CAACTCAAGTCCCGAATGCAT 58.913 47.619 0.00 0.00 0.00 3.96
3056 3270 1.522668 CAACTCAAGTCCCGAATGCA 58.477 50.000 0.00 0.00 0.00 3.96
3057 3271 0.169009 GCAACTCAAGTCCCGAATGC 59.831 55.000 0.00 0.00 0.00 3.56
3058 3272 1.813513 AGCAACTCAAGTCCCGAATG 58.186 50.000 0.00 0.00 0.00 2.67
3059 3273 3.600388 CTTAGCAACTCAAGTCCCGAAT 58.400 45.455 0.00 0.00 0.00 3.34
3060 3274 2.289444 CCTTAGCAACTCAAGTCCCGAA 60.289 50.000 0.00 0.00 0.00 4.30
3061 3275 1.275291 CCTTAGCAACTCAAGTCCCGA 59.725 52.381 0.00 0.00 0.00 5.14
3062 3276 1.002087 ACCTTAGCAACTCAAGTCCCG 59.998 52.381 0.00 0.00 0.00 5.14
3063 3277 2.861147 ACCTTAGCAACTCAAGTCCC 57.139 50.000 0.00 0.00 0.00 4.46
3064 3278 7.916914 TTAAATACCTTAGCAACTCAAGTCC 57.083 36.000 0.00 0.00 0.00 3.85
3065 3279 7.910683 GCATTAAATACCTTAGCAACTCAAGTC 59.089 37.037 0.00 0.00 0.00 3.01
3066 3280 7.393234 TGCATTAAATACCTTAGCAACTCAAGT 59.607 33.333 0.00 0.00 0.00 3.16
3067 3281 7.761409 TGCATTAAATACCTTAGCAACTCAAG 58.239 34.615 0.00 0.00 0.00 3.02
3068 3282 7.695480 TGCATTAAATACCTTAGCAACTCAA 57.305 32.000 0.00 0.00 0.00 3.02
3069 3283 7.880160 ATGCATTAAATACCTTAGCAACTCA 57.120 32.000 0.00 0.00 33.91 3.41
3072 3286 8.968242 GCTAAATGCATTAAATACCTTAGCAAC 58.032 33.333 21.90 2.54 39.68 4.17
3090 3304 5.449177 GGTGTTTAGATGAGGTGCTAAATGC 60.449 44.000 0.00 0.00 38.43 3.56
3091 3305 5.882557 AGGTGTTTAGATGAGGTGCTAAATG 59.117 40.000 0.00 0.00 38.43 2.32
3092 3306 6.067217 AGGTGTTTAGATGAGGTGCTAAAT 57.933 37.500 0.00 0.00 38.43 1.40
3093 3307 5.499004 AGGTGTTTAGATGAGGTGCTAAA 57.501 39.130 0.00 0.00 35.03 1.85
3094 3308 5.499004 AAGGTGTTTAGATGAGGTGCTAA 57.501 39.130 0.00 0.00 0.00 3.09
3095 3309 5.245531 CAAAGGTGTTTAGATGAGGTGCTA 58.754 41.667 0.00 0.00 0.00 3.49
3096 3310 4.074970 CAAAGGTGTTTAGATGAGGTGCT 58.925 43.478 0.00 0.00 0.00 4.40
3097 3311 3.366374 GCAAAGGTGTTTAGATGAGGTGC 60.366 47.826 0.00 0.00 0.00 5.01
3098 3312 3.820467 TGCAAAGGTGTTTAGATGAGGTG 59.180 43.478 0.00 0.00 0.00 4.00
3099 3313 4.098914 TGCAAAGGTGTTTAGATGAGGT 57.901 40.909 0.00 0.00 0.00 3.85
3100 3314 5.404946 CAATGCAAAGGTGTTTAGATGAGG 58.595 41.667 0.00 0.00 0.00 3.86
3101 3315 5.183713 TCCAATGCAAAGGTGTTTAGATGAG 59.816 40.000 7.57 0.00 0.00 2.90
3102 3316 5.076182 TCCAATGCAAAGGTGTTTAGATGA 58.924 37.500 7.57 0.00 0.00 2.92
3103 3317 5.389859 TCCAATGCAAAGGTGTTTAGATG 57.610 39.130 7.57 0.00 0.00 2.90
3104 3318 5.774690 TCTTCCAATGCAAAGGTGTTTAGAT 59.225 36.000 7.57 0.00 0.00 1.98
3105 3319 5.136828 TCTTCCAATGCAAAGGTGTTTAGA 58.863 37.500 7.57 2.89 0.00 2.10
3106 3320 5.452078 TCTTCCAATGCAAAGGTGTTTAG 57.548 39.130 7.57 1.02 0.00 1.85
3107 3321 4.280677 CCTCTTCCAATGCAAAGGTGTTTA 59.719 41.667 7.57 0.00 0.00 2.01
3108 3322 3.070015 CCTCTTCCAATGCAAAGGTGTTT 59.930 43.478 7.57 0.00 0.00 2.83
3109 3323 2.629617 CCTCTTCCAATGCAAAGGTGTT 59.370 45.455 7.57 0.00 0.00 3.32
3110 3324 2.242043 CCTCTTCCAATGCAAAGGTGT 58.758 47.619 7.57 0.00 0.00 4.16
3111 3325 2.229784 GACCTCTTCCAATGCAAAGGTG 59.770 50.000 7.57 3.35 37.26 4.00
3112 3326 2.108952 AGACCTCTTCCAATGCAAAGGT 59.891 45.455 7.57 4.39 39.76 3.50
3113 3327 2.800250 AGACCTCTTCCAATGCAAAGG 58.200 47.619 0.00 0.00 0.00 3.11
3114 3328 4.142513 GCTTAGACCTCTTCCAATGCAAAG 60.143 45.833 0.00 0.00 0.00 2.77
3115 3329 3.758554 GCTTAGACCTCTTCCAATGCAAA 59.241 43.478 0.00 0.00 0.00 3.68
3116 3330 3.347216 GCTTAGACCTCTTCCAATGCAA 58.653 45.455 0.00 0.00 0.00 4.08
3117 3331 2.356125 GGCTTAGACCTCTTCCAATGCA 60.356 50.000 0.00 0.00 0.00 3.96
3118 3332 2.293170 GGCTTAGACCTCTTCCAATGC 58.707 52.381 0.00 0.00 0.00 3.56
3119 3333 3.634397 TGGCTTAGACCTCTTCCAATG 57.366 47.619 0.00 0.00 0.00 2.82
3120 3334 3.181461 CGATGGCTTAGACCTCTTCCAAT 60.181 47.826 0.00 0.00 0.00 3.16
3121 3335 2.168521 CGATGGCTTAGACCTCTTCCAA 59.831 50.000 0.00 0.00 0.00 3.53
3122 3336 1.757118 CGATGGCTTAGACCTCTTCCA 59.243 52.381 0.00 0.00 0.00 3.53
3123 3337 1.539280 GCGATGGCTTAGACCTCTTCC 60.539 57.143 0.00 0.00 35.83 3.46
3124 3338 1.137086 TGCGATGGCTTAGACCTCTTC 59.863 52.381 0.15 0.00 40.82 2.87
3125 3339 1.195115 TGCGATGGCTTAGACCTCTT 58.805 50.000 0.15 0.00 40.82 2.85
3126 3340 1.418334 ATGCGATGGCTTAGACCTCT 58.582 50.000 0.15 0.00 40.82 3.69
3127 3341 3.601443 ATATGCGATGGCTTAGACCTC 57.399 47.619 0.15 0.00 40.82 3.85
3128 3342 3.449018 CCTATATGCGATGGCTTAGACCT 59.551 47.826 0.15 0.00 40.82 3.85
3129 3343 3.430929 CCCTATATGCGATGGCTTAGACC 60.431 52.174 0.15 0.00 40.82 3.85
3130 3344 3.786635 CCCTATATGCGATGGCTTAGAC 58.213 50.000 0.15 0.00 40.82 2.59
3131 3345 2.168521 GCCCTATATGCGATGGCTTAGA 59.831 50.000 0.15 0.00 40.82 2.10
3222 3436 5.104485 ACACTTTTAGAGGACCTCACACTTT 60.104 40.000 23.60 4.10 32.06 2.66
3223 3437 4.409247 ACACTTTTAGAGGACCTCACACTT 59.591 41.667 23.60 4.85 32.06 3.16
3224 3438 3.967987 ACACTTTTAGAGGACCTCACACT 59.032 43.478 23.60 5.24 32.06 3.55
3225 3439 4.338379 ACACTTTTAGAGGACCTCACAC 57.662 45.455 23.60 0.00 32.06 3.82
3226 3440 4.407621 TGAACACTTTTAGAGGACCTCACA 59.592 41.667 23.60 7.97 32.06 3.58
3227 3441 4.957296 TGAACACTTTTAGAGGACCTCAC 58.043 43.478 23.60 0.00 32.06 3.51
3228 3442 5.130477 AGTTGAACACTTTTAGAGGACCTCA 59.870 40.000 23.60 6.89 28.40 3.86
3229 3443 5.467063 CAGTTGAACACTTTTAGAGGACCTC 59.533 44.000 14.15 14.15 30.92 3.85
3230 3444 5.368989 CAGTTGAACACTTTTAGAGGACCT 58.631 41.667 0.00 0.00 30.92 3.85
3231 3445 4.023963 GCAGTTGAACACTTTTAGAGGACC 60.024 45.833 0.00 0.00 30.92 4.46
3232 3446 4.023963 GGCAGTTGAACACTTTTAGAGGAC 60.024 45.833 0.00 0.00 30.92 3.85
3233 3447 4.134563 GGCAGTTGAACACTTTTAGAGGA 58.865 43.478 0.00 0.00 30.92 3.71
3234 3448 3.253432 GGGCAGTTGAACACTTTTAGAGG 59.747 47.826 0.00 0.00 30.92 3.69
3235 3449 4.023707 CAGGGCAGTTGAACACTTTTAGAG 60.024 45.833 0.00 0.00 30.92 2.43
3236 3450 3.882888 CAGGGCAGTTGAACACTTTTAGA 59.117 43.478 0.00 0.00 30.92 2.10
3237 3451 3.632145 ACAGGGCAGTTGAACACTTTTAG 59.368 43.478 0.00 0.00 30.92 1.85
3238 3452 3.380004 CACAGGGCAGTTGAACACTTTTA 59.620 43.478 0.00 0.00 30.92 1.52
3239 3453 2.166254 CACAGGGCAGTTGAACACTTTT 59.834 45.455 0.00 0.00 30.92 2.27
3331 3545 2.159043 ACGGATGACCAATACTGCAGAG 60.159 50.000 23.35 6.98 35.59 3.35
3336 3550 6.538742 ACAAGAATTACGGATGACCAATACTG 59.461 38.462 0.00 0.00 35.59 2.74
3389 3603 6.560003 TTTGAGAAGCTAATCCCATCAGTA 57.440 37.500 0.00 0.00 0.00 2.74
3431 3645 7.459795 TGGAAATGTTATTGTACAGATTGCA 57.540 32.000 0.00 0.00 31.54 4.08
3475 3689 8.915057 ATCGAAAAGAACCAGATCATATTCAT 57.085 30.769 0.00 0.00 0.00 2.57
3504 3718 7.950512 TCACTAATTTTTGCTTGGAATTCAGA 58.049 30.769 7.93 0.00 0.00 3.27
3513 3727 3.676646 GCAGCCTCACTAATTTTTGCTTG 59.323 43.478 0.00 0.00 0.00 4.01
3528 3774 3.456280 TGACATTTGTTTTTGCAGCCTC 58.544 40.909 0.00 0.00 0.00 4.70
3724 4165 7.962964 TGTCAGTTAGAAAGTACAATTCTGG 57.037 36.000 18.85 9.44 37.67 3.86
3740 4181 6.040278 TGAATGTTGCAGGAATTTGTCAGTTA 59.960 34.615 0.00 0.00 0.00 2.24
3747 4188 4.084223 GCTGTTGAATGTTGCAGGAATTTG 60.084 41.667 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.