Multiple sequence alignment - TraesCS7B01G148100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G148100 chr7B 100.000 2798 0 0 1 2798 194755483 194758280 0.000000e+00 5168
1 TraesCS7B01G148100 chr7B 92.424 132 9 1 2668 2798 583558459 583558590 1.320000e-43 187
2 TraesCS7B01G148100 chr7D 93.720 2325 104 21 1 2301 206610433 206608127 0.000000e+00 3446
3 TraesCS7B01G148100 chr7D 93.651 315 13 4 2356 2667 206608013 206607703 5.460000e-127 464
4 TraesCS7B01G148100 chr7A 92.969 2048 96 23 1 2027 219033681 219031661 0.000000e+00 2940
5 TraesCS7B01G148100 chr7A 81.273 534 59 17 2165 2667 219029493 219028970 7.260000e-106 394
6 TraesCS7B01G148100 chr6B 93.182 132 7 2 2668 2798 28978995 28978865 2.840000e-45 193
7 TraesCS7B01G148100 chr3B 94.215 121 5 2 2679 2798 605644967 605644848 1.710000e-42 183
8 TraesCS7B01G148100 chrUn 92.857 126 8 1 2674 2798 263809939 263810064 6.160000e-42 182
9 TraesCS7B01G148100 chrUn 92.857 126 8 1 2674 2798 289980024 289979899 6.160000e-42 182
10 TraesCS7B01G148100 chr4A 92.857 126 8 1 2674 2798 704340837 704340712 6.160000e-42 182
11 TraesCS7B01G148100 chr4A 92.126 127 8 2 2674 2798 670939735 670939861 7.960000e-41 178
12 TraesCS7B01G148100 chr2B 92.857 126 8 1 2674 2798 756160112 756160237 6.160000e-42 182
13 TraesCS7B01G148100 chr2B 91.538 130 9 2 2670 2798 778295505 778295377 7.960000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G148100 chr7B 194755483 194758280 2797 False 5168 5168 100.0000 1 2798 1 chr7B.!!$F1 2797
1 TraesCS7B01G148100 chr7D 206607703 206610433 2730 True 1955 3446 93.6855 1 2667 2 chr7D.!!$R1 2666
2 TraesCS7B01G148100 chr7A 219028970 219033681 4711 True 1667 2940 87.1210 1 2667 2 chr7A.!!$R1 2666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 518 0.166814 GGACTGTTCAGTTCATGCGC 59.833 55.0 0.0 0.0 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2435 4624 1.132817 AGAGGGGGTAATATGGACGCT 60.133 52.381 5.42 0.0 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 158 0.457166 CGTCTAATCCAACGCCGTGA 60.457 55.000 0.00 0.00 31.48 4.35
203 216 4.022935 GTCTCCATGTGTTTGCAATCTGAA 60.023 41.667 0.00 0.00 0.00 3.02
245 258 4.213694 TCGAAAAATTAACTTACAGGCGCA 59.786 37.500 10.83 0.00 0.00 6.09
247 260 5.003402 CGAAAAATTAACTTACAGGCGCATG 59.997 40.000 22.13 22.13 0.00 4.06
371 384 4.573021 ATGCATTGTAATTTTTGGCCCT 57.427 36.364 0.00 0.00 0.00 5.19
379 392 2.014010 ATTTTTGGCCCTTGCTCTCA 57.986 45.000 0.00 0.00 37.74 3.27
392 405 4.383880 CCTTGCTCTCAGATTCAGGAATGA 60.384 45.833 0.00 0.00 0.00 2.57
405 418 3.258872 TCAGGAATGAGCAATTTGTTGGG 59.741 43.478 0.00 0.00 0.00 4.12
410 423 4.961438 ATGAGCAATTTGTTGGGTTTCT 57.039 36.364 0.00 0.00 0.00 2.52
422 435 1.494721 TGGGTTTCTCTGTTCTTGCCT 59.505 47.619 0.00 0.00 0.00 4.75
434 447 5.127031 TCTGTTCTTGCCTTTGTTTTAGCTT 59.873 36.000 0.00 0.00 0.00 3.74
471 484 3.339141 CATCCATGATGCTGAGATCTGG 58.661 50.000 0.00 0.00 33.17 3.86
502 518 0.166814 GGACTGTTCAGTTCATGCGC 59.833 55.000 0.00 0.00 0.00 6.09
540 557 8.941977 CCACCTTTTTATTTTATTTTGGTAGGC 58.058 33.333 0.00 0.00 0.00 3.93
766 785 2.792542 CGCCTTGCAATTCTCGGAAATC 60.793 50.000 0.00 0.00 0.00 2.17
797 816 3.076621 TCGGAAGAACTGCGAGTTACTA 58.923 45.455 2.17 0.00 43.66 1.82
808 827 5.163447 ACTGCGAGTTACTATTCCTGCATAA 60.163 40.000 0.00 0.00 0.00 1.90
809 828 5.666462 TGCGAGTTACTATTCCTGCATAAA 58.334 37.500 0.00 0.00 0.00 1.40
836 858 5.711976 AGGAACCACAATTTATCTCCTGTTG 59.288 40.000 0.00 0.00 30.63 3.33
886 908 5.344884 CGTTTTTGTGGGTGTAGAATTTGT 58.655 37.500 0.00 0.00 0.00 2.83
888 910 6.415573 CGTTTTTGTGGGTGTAGAATTTGTAC 59.584 38.462 0.00 0.00 0.00 2.90
909 931 8.654485 TGTACACTAGGTAATTCAGGTTCTTA 57.346 34.615 0.00 0.00 32.72 2.10
912 934 7.565680 ACACTAGGTAATTCAGGTTCTTATGG 58.434 38.462 0.00 0.00 0.00 2.74
914 936 8.432805 CACTAGGTAATTCAGGTTCTTATGGAT 58.567 37.037 0.00 0.00 0.00 3.41
915 937 8.432805 ACTAGGTAATTCAGGTTCTTATGGATG 58.567 37.037 0.00 0.00 0.00 3.51
917 939 7.872138 AGGTAATTCAGGTTCTTATGGATGAA 58.128 34.615 0.00 0.00 0.00 2.57
918 940 8.336235 AGGTAATTCAGGTTCTTATGGATGAAA 58.664 33.333 0.00 0.00 31.14 2.69
919 941 8.966868 GGTAATTCAGGTTCTTATGGATGAAAA 58.033 33.333 0.00 0.00 31.14 2.29
958 980 6.980397 CAGTGCTTAATTCTTGGTTGTTCTTT 59.020 34.615 0.00 0.00 0.00 2.52
979 1001 1.177401 GTGACCTCAGGGATTTTGGC 58.823 55.000 0.00 0.00 36.25 4.52
980 1002 0.776810 TGACCTCAGGGATTTTGGCA 59.223 50.000 0.00 0.00 36.25 4.92
1016 1038 0.178533 AGGATGAAGCTCAGAGCAGC 59.821 55.000 24.64 15.33 45.56 5.25
1030 1052 3.050339 CAGCCATTTTGCCCGTGT 58.950 55.556 0.00 0.00 0.00 4.49
1031 1053 1.367102 CAGCCATTTTGCCCGTGTT 59.633 52.632 0.00 0.00 0.00 3.32
1047 1069 0.961857 TGTTCATGCTCGCCATTGCT 60.962 50.000 0.00 0.00 34.43 3.91
1068 1090 1.153005 GCTCTCCTCCCCAGCATTG 60.153 63.158 0.00 0.00 33.06 2.82
1395 1417 0.525668 CCAAGTACTACTCGCTGGCG 60.526 60.000 8.80 8.80 41.35 5.69
1542 1564 2.035312 AGCGTCTACTCCACCCGT 59.965 61.111 0.00 0.00 0.00 5.28
1901 1924 2.684001 TTGGACATAGTAGGCGTTGG 57.316 50.000 0.00 0.00 0.00 3.77
1902 1925 1.563924 TGGACATAGTAGGCGTTGGT 58.436 50.000 0.00 0.00 0.00 3.67
1903 1926 1.903860 TGGACATAGTAGGCGTTGGTT 59.096 47.619 0.00 0.00 0.00 3.67
1904 1927 2.277084 GGACATAGTAGGCGTTGGTTG 58.723 52.381 0.00 0.00 0.00 3.77
2081 4175 7.104939 TCGAAAAAGAGATTACCCGGAAAATA 58.895 34.615 0.73 0.00 0.00 1.40
2094 4188 2.354704 CGGAAAATACACAGGAGCTCCA 60.355 50.000 33.90 14.09 38.89 3.86
2131 4235 9.722184 TGAATATCAAATTCAAAAATGCCAGAA 57.278 25.926 0.00 0.00 35.35 3.02
2166 4270 9.443365 AAAAATCTGGAATCTTGGGATATCAAT 57.557 29.630 4.83 0.00 0.00 2.57
2187 4292 2.044492 TCTGGGTGTCCAATCTACTCCT 59.956 50.000 0.00 0.00 43.51 3.69
2242 4349 8.943909 AAAAGTATCCGAGACGAAGAAAATAT 57.056 30.769 0.00 0.00 0.00 1.28
2272 4379 3.696051 CCTATGATCCACCCAAACAGTTG 59.304 47.826 0.00 0.00 34.25 3.16
2274 4381 3.866703 TGATCCACCCAAACAGTTGTA 57.133 42.857 0.00 0.00 32.40 2.41
2275 4382 3.482436 TGATCCACCCAAACAGTTGTAC 58.518 45.455 0.00 0.00 32.40 2.90
2324 4490 7.119699 TGTGAGTACCATGAATGTCATTTCTTC 59.880 37.037 0.00 0.00 34.28 2.87
2326 4492 6.173339 AGTACCATGAATGTCATTTCTTCGT 58.827 36.000 0.00 0.00 34.28 3.85
2413 4600 6.702723 TCGAATTTAATGTTCGTATAGGTGGG 59.297 38.462 17.61 0.00 46.21 4.61
2414 4601 6.480981 CGAATTTAATGTTCGTATAGGTGGGT 59.519 38.462 12.70 0.00 42.44 4.51
2415 4602 7.517734 CGAATTTAATGTTCGTATAGGTGGGTG 60.518 40.741 12.70 0.00 42.44 4.61
2417 4604 4.829872 AATGTTCGTATAGGTGGGTGAA 57.170 40.909 0.00 0.00 0.00 3.18
2418 4605 3.880047 TGTTCGTATAGGTGGGTGAAG 57.120 47.619 0.00 0.00 0.00 3.02
2508 4697 9.987272 CCATTACTTCTCATGTACATGATCTTA 57.013 33.333 32.97 20.30 45.74 2.10
2526 4715 9.798994 ATGATCTTAAAGAAGAAAATGACATGC 57.201 29.630 0.00 0.00 44.85 4.06
2538 4728 8.523915 AGAAAATGACATGCCATATGAACTAA 57.476 30.769 3.65 0.00 0.00 2.24
2675 4865 8.970691 AATATGAAAATATATTTGAGTGCGGC 57.029 30.769 11.42 0.00 30.98 6.53
2676 4866 6.639632 ATGAAAATATATTTGAGTGCGGCT 57.360 33.333 11.42 0.00 0.00 5.52
2677 4867 7.744087 ATGAAAATATATTTGAGTGCGGCTA 57.256 32.000 11.42 0.00 0.00 3.93
2678 4868 7.561021 TGAAAATATATTTGAGTGCGGCTAA 57.439 32.000 11.42 0.00 0.00 3.09
2679 4869 8.165239 TGAAAATATATTTGAGTGCGGCTAAT 57.835 30.769 11.42 0.00 0.00 1.73
2680 4870 8.289618 TGAAAATATATTTGAGTGCGGCTAATC 58.710 33.333 11.42 1.92 0.00 1.75
2681 4871 7.986085 AAATATATTTGAGTGCGGCTAATCT 57.014 32.000 9.93 0.00 0.00 2.40
2682 4872 6.974932 ATATATTTGAGTGCGGCTAATCTG 57.025 37.500 0.00 0.00 0.00 2.90
2688 4878 2.902343 GCGGCTAATCTGCACCCC 60.902 66.667 0.00 0.00 46.35 4.95
2689 4879 2.203209 CGGCTAATCTGCACCCCC 60.203 66.667 0.00 0.00 34.04 5.40
2690 4880 2.203209 GGCTAATCTGCACCCCCG 60.203 66.667 0.00 0.00 34.04 5.73
2691 4881 2.902343 GCTAATCTGCACCCCCGC 60.902 66.667 0.00 0.00 0.00 6.13
2692 4882 2.911143 CTAATCTGCACCCCCGCT 59.089 61.111 0.00 0.00 0.00 5.52
2693 4883 1.224592 CTAATCTGCACCCCCGCTT 59.775 57.895 0.00 0.00 0.00 4.68
2694 4884 0.815615 CTAATCTGCACCCCCGCTTC 60.816 60.000 0.00 0.00 0.00 3.86
2695 4885 2.587322 TAATCTGCACCCCCGCTTCG 62.587 60.000 0.00 0.00 0.00 3.79
2697 4887 4.697756 CTGCACCCCCGCTTCGAA 62.698 66.667 0.00 0.00 0.00 3.71
2698 4888 4.257654 TGCACCCCCGCTTCGAAA 62.258 61.111 0.00 0.00 0.00 3.46
2699 4889 2.981350 GCACCCCCGCTTCGAAAA 60.981 61.111 0.00 0.00 0.00 2.29
2700 4890 2.557372 GCACCCCCGCTTCGAAAAA 61.557 57.895 0.00 0.00 0.00 1.94
2767 4957 6.489127 TTTGTGGTGGTAGATAATTTGACG 57.511 37.500 0.00 0.00 0.00 4.35
2768 4958 3.936453 TGTGGTGGTAGATAATTTGACGC 59.064 43.478 0.00 0.00 0.00 5.19
2769 4959 3.000925 GTGGTGGTAGATAATTTGACGCG 59.999 47.826 3.53 3.53 0.00 6.01
2770 4960 3.192466 GGTGGTAGATAATTTGACGCGT 58.808 45.455 13.85 13.85 0.00 6.01
2771 4961 3.000925 GGTGGTAGATAATTTGACGCGTG 59.999 47.826 20.70 0.00 0.00 5.34
2772 4962 3.861113 GTGGTAGATAATTTGACGCGTGA 59.139 43.478 20.70 4.74 0.00 4.35
2773 4963 4.026804 GTGGTAGATAATTTGACGCGTGAG 60.027 45.833 20.70 0.00 0.00 3.51
2774 4964 3.489785 GGTAGATAATTTGACGCGTGAGG 59.510 47.826 20.70 0.00 0.00 3.86
2775 4965 3.247006 AGATAATTTGACGCGTGAGGT 57.753 42.857 20.70 0.00 0.00 3.85
2776 4966 2.930040 AGATAATTTGACGCGTGAGGTG 59.070 45.455 20.70 0.00 0.00 4.00
2777 4967 0.793861 TAATTTGACGCGTGAGGTGC 59.206 50.000 20.70 0.06 0.00 5.01
2793 4983 2.485266 GTGCGCACCAAAAGTTAACT 57.515 45.000 30.12 1.12 0.00 2.24
2794 4984 2.381589 GTGCGCACCAAAAGTTAACTC 58.618 47.619 30.12 0.00 0.00 3.01
2795 4985 2.017782 TGCGCACCAAAAGTTAACTCA 58.982 42.857 5.66 0.00 0.00 3.41
2796 4986 2.621055 TGCGCACCAAAAGTTAACTCAT 59.379 40.909 5.66 0.00 0.00 2.90
2797 4987 3.067461 TGCGCACCAAAAGTTAACTCATT 59.933 39.130 5.66 4.73 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 216 2.541556 GAAAATCGAGCGCCTCTAAGT 58.458 47.619 2.29 0.00 0.00 2.24
233 246 0.452987 CAATGCATGCGCCTGTAAGT 59.547 50.000 14.09 0.00 37.32 2.24
247 260 2.201732 CAGATCCAAATGCAGCAATGC 58.798 47.619 0.00 0.00 0.00 3.56
355 368 3.645687 AGAGCAAGGGCCAAAAATTACAA 59.354 39.130 6.18 0.00 42.56 2.41
365 378 0.254178 GAATCTGAGAGCAAGGGCCA 59.746 55.000 6.18 0.00 42.56 5.36
371 384 4.767478 CTCATTCCTGAATCTGAGAGCAA 58.233 43.478 5.06 0.00 0.00 3.91
379 392 6.395629 CAACAAATTGCTCATTCCTGAATCT 58.604 36.000 0.00 0.00 0.00 2.40
392 405 3.706086 ACAGAGAAACCCAACAAATTGCT 59.294 39.130 0.00 0.00 34.17 3.91
405 418 4.639135 ACAAAGGCAAGAACAGAGAAAC 57.361 40.909 0.00 0.00 0.00 2.78
410 423 4.644685 AGCTAAAACAAAGGCAAGAACAGA 59.355 37.500 0.00 0.00 0.00 3.41
434 447 3.237746 TGGATGGAACAAATTGCTCCAA 58.762 40.909 20.32 3.47 44.77 3.53
471 484 1.200484 GAACAGTCCTCTGACGTCCTC 59.800 57.143 14.12 0.00 46.51 3.71
516 532 9.719355 CTGCCTACCAAAATAAAATAAAAAGGT 57.281 29.630 0.00 0.00 0.00 3.50
519 535 8.994170 GTGCTGCCTACCAAAATAAAATAAAAA 58.006 29.630 0.00 0.00 0.00 1.94
540 557 2.476686 CGGCATTACAGAACATGTGCTG 60.477 50.000 29.18 29.18 43.80 4.41
596 614 4.489737 ACAGATATAAATGACGAGGGGGA 58.510 43.478 0.00 0.00 0.00 4.81
597 615 4.322801 GGACAGATATAAATGACGAGGGGG 60.323 50.000 0.00 0.00 0.00 5.40
609 627 7.316393 CCTATCACCAAAGGGACAGATATAA 57.684 40.000 0.00 0.00 38.05 0.98
766 785 2.069273 AGTTCTTCCGATTTCTGCACG 58.931 47.619 0.00 0.00 0.00 5.34
786 805 3.819564 ATGCAGGAATAGTAACTCGCA 57.180 42.857 0.00 0.00 0.00 5.10
808 827 5.016831 GGAGATAAATTGTGGTTCCTGGTT 58.983 41.667 0.00 0.00 0.00 3.67
809 828 4.292306 AGGAGATAAATTGTGGTTCCTGGT 59.708 41.667 0.00 0.00 32.61 4.00
836 858 7.911727 CGGTAATTACTTAATTTACTGGCCAAC 59.088 37.037 7.01 0.00 37.16 3.77
886 908 8.701895 CCATAAGAACCTGAATTACCTAGTGTA 58.298 37.037 0.00 0.00 0.00 2.90
888 910 7.792032 TCCATAAGAACCTGAATTACCTAGTG 58.208 38.462 0.00 0.00 0.00 2.74
931 953 5.852282 ACAACCAAGAATTAAGCACTGTT 57.148 34.783 0.00 0.00 0.00 3.16
932 954 5.594317 AGAACAACCAAGAATTAAGCACTGT 59.406 36.000 0.00 0.00 0.00 3.55
948 970 3.066760 CCTGAGGTCACAAAAGAACAACC 59.933 47.826 0.00 0.00 0.00 3.77
958 980 2.875296 CCAAAATCCCTGAGGTCACAA 58.125 47.619 0.00 0.00 0.00 3.33
979 1001 1.251251 CTGAAGGTCCCCTGCTTTTG 58.749 55.000 0.00 0.00 32.13 2.44
980 1002 0.113190 CCTGAAGGTCCCCTGCTTTT 59.887 55.000 0.00 0.00 32.13 2.27
1016 1038 1.712401 CATGAACACGGGCAAAATGG 58.288 50.000 0.00 0.00 0.00 3.16
1047 1069 3.005539 GCTGGGGAGGAGAGCACA 61.006 66.667 0.00 0.00 32.70 4.57
1068 1090 2.448705 GCTCTTCGTCTTCTGCGCC 61.449 63.158 4.18 0.00 0.00 6.53
1233 1255 1.869690 GTTCGCCTTGCTCTGGAAC 59.130 57.895 0.00 0.00 0.00 3.62
1314 1336 1.952635 GAGGTTGGCGAACGTCGTT 60.953 57.895 16.66 11.08 42.81 3.85
1395 1417 1.534595 CTGCTCAGCTTGTTGAACTCC 59.465 52.381 0.00 0.00 0.00 3.85
1780 1802 2.160219 TCGCTCACAAAAGCATCATCAC 59.840 45.455 0.00 0.00 42.62 3.06
1901 1924 4.644103 ATGATGCAAATCCTAGCACAAC 57.356 40.909 0.00 0.00 44.49 3.32
1902 1925 7.362315 GCATATATGATGCAAATCCTAGCACAA 60.362 37.037 17.10 0.00 44.49 3.33
1903 1926 6.094464 GCATATATGATGCAAATCCTAGCACA 59.906 38.462 17.10 0.00 44.49 4.57
1904 1927 6.318144 AGCATATATGATGCAAATCCTAGCAC 59.682 38.462 17.10 0.00 46.77 4.40
2081 4175 1.915769 GAGGGTGGAGCTCCTGTGT 60.916 63.158 32.28 15.40 36.82 3.72
2141 4245 9.086758 GATTGATATCCCAAGATTCCAGATTTT 57.913 33.333 0.00 0.00 33.67 1.82
2148 4252 5.222213 ACCCAGATTGATATCCCAAGATTCC 60.222 44.000 0.00 0.00 33.67 3.01
2166 4270 2.044492 AGGAGTAGATTGGACACCCAGA 59.956 50.000 0.00 0.00 44.60 3.86
2220 4327 6.040616 ACCATATTTTCTTCGTCTCGGATACT 59.959 38.462 0.00 0.00 0.00 2.12
2242 4349 1.410004 GTGGATCATAGGTCGGACCA 58.590 55.000 27.87 14.71 41.95 4.02
2326 4492 1.180456 TACTCCCGTGCGAAGTTCCA 61.180 55.000 0.00 0.00 0.00 3.53
2403 4590 2.504175 TCCTTGCTTCACCCACCTATAC 59.496 50.000 0.00 0.00 0.00 1.47
2410 4597 2.005606 TTGGCTCCTTGCTTCACCCA 62.006 55.000 0.00 0.00 42.39 4.51
2413 4600 2.888834 TTTTTGGCTCCTTGCTTCAC 57.111 45.000 0.00 0.00 42.39 3.18
2414 4601 2.964464 TGATTTTTGGCTCCTTGCTTCA 59.036 40.909 0.00 0.00 42.39 3.02
2415 4602 3.582780 CTGATTTTTGGCTCCTTGCTTC 58.417 45.455 0.00 0.00 42.39 3.86
2417 4604 1.274447 GCTGATTTTTGGCTCCTTGCT 59.726 47.619 0.00 0.00 42.39 3.91
2418 4605 1.718396 GCTGATTTTTGGCTCCTTGC 58.282 50.000 0.00 0.00 41.94 4.01
2435 4624 1.132817 AGAGGGGGTAATATGGACGCT 60.133 52.381 5.42 0.00 0.00 5.07
2508 4697 8.070034 TCATATGGCATGTCATTTTCTTCTTT 57.930 30.769 19.60 0.00 0.00 2.52
2526 4715 6.765989 TGAAAACGAGGGATTAGTTCATATGG 59.234 38.462 2.13 0.00 0.00 2.74
2538 4728 8.053355 ACTCCTTATATTTTGAAAACGAGGGAT 58.947 33.333 0.00 0.00 0.00 3.85
2667 4857 4.521075 TGCAGATTAGCCGCACTC 57.479 55.556 0.00 0.00 0.00 3.51
2670 4860 2.124736 GGGTGCAGATTAGCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
2671 4861 2.902343 GGGGTGCAGATTAGCCGC 60.902 66.667 0.00 0.00 36.57 6.53
2672 4862 2.203209 GGGGGTGCAGATTAGCCG 60.203 66.667 0.00 0.00 36.57 5.52
2673 4863 2.203209 CGGGGGTGCAGATTAGCC 60.203 66.667 0.00 0.00 35.00 3.93
2674 4864 2.893682 AAGCGGGGGTGCAGATTAGC 62.894 60.000 0.00 0.00 37.31 3.09
2675 4865 0.815615 GAAGCGGGGGTGCAGATTAG 60.816 60.000 0.00 0.00 37.31 1.73
2676 4866 1.223487 GAAGCGGGGGTGCAGATTA 59.777 57.895 0.00 0.00 37.31 1.75
2677 4867 2.044946 GAAGCGGGGGTGCAGATT 60.045 61.111 0.00 0.00 37.31 2.40
2678 4868 4.473520 CGAAGCGGGGGTGCAGAT 62.474 66.667 0.00 0.00 37.31 2.90
2680 4870 4.697756 TTCGAAGCGGGGGTGCAG 62.698 66.667 0.00 0.00 37.31 4.41
2681 4871 3.776347 TTTTCGAAGCGGGGGTGCA 62.776 57.895 0.00 0.00 37.31 4.57
2682 4872 2.557372 TTTTTCGAAGCGGGGGTGC 61.557 57.895 0.00 0.00 0.00 5.01
2683 4873 3.752704 TTTTTCGAAGCGGGGGTG 58.247 55.556 0.00 0.00 0.00 4.61
2742 4932 7.364200 CGTCAAATTATCTACCACCACAAAAA 58.636 34.615 0.00 0.00 0.00 1.94
2743 4933 6.568844 GCGTCAAATTATCTACCACCACAAAA 60.569 38.462 0.00 0.00 0.00 2.44
2744 4934 5.106475 GCGTCAAATTATCTACCACCACAAA 60.106 40.000 0.00 0.00 0.00 2.83
2745 4935 4.393680 GCGTCAAATTATCTACCACCACAA 59.606 41.667 0.00 0.00 0.00 3.33
2746 4936 3.936453 GCGTCAAATTATCTACCACCACA 59.064 43.478 0.00 0.00 0.00 4.17
2747 4937 3.000925 CGCGTCAAATTATCTACCACCAC 59.999 47.826 0.00 0.00 0.00 4.16
2748 4938 3.191669 CGCGTCAAATTATCTACCACCA 58.808 45.455 0.00 0.00 0.00 4.17
2749 4939 3.000925 CACGCGTCAAATTATCTACCACC 59.999 47.826 9.86 0.00 0.00 4.61
2750 4940 3.861113 TCACGCGTCAAATTATCTACCAC 59.139 43.478 9.86 0.00 0.00 4.16
2751 4941 4.109766 CTCACGCGTCAAATTATCTACCA 58.890 43.478 9.86 0.00 0.00 3.25
2752 4942 3.489785 CCTCACGCGTCAAATTATCTACC 59.510 47.826 9.86 0.00 0.00 3.18
2753 4943 4.026804 CACCTCACGCGTCAAATTATCTAC 60.027 45.833 9.86 0.00 0.00 2.59
2754 4944 4.109766 CACCTCACGCGTCAAATTATCTA 58.890 43.478 9.86 0.00 0.00 1.98
2755 4945 2.930040 CACCTCACGCGTCAAATTATCT 59.070 45.455 9.86 0.00 0.00 1.98
2756 4946 2.536928 GCACCTCACGCGTCAAATTATC 60.537 50.000 9.86 0.00 0.00 1.75
2757 4947 1.396996 GCACCTCACGCGTCAAATTAT 59.603 47.619 9.86 0.00 0.00 1.28
2758 4948 0.793861 GCACCTCACGCGTCAAATTA 59.206 50.000 9.86 0.00 0.00 1.40
2759 4949 1.574428 GCACCTCACGCGTCAAATT 59.426 52.632 9.86 0.00 0.00 1.82
2760 4950 3.253955 GCACCTCACGCGTCAAAT 58.746 55.556 9.86 0.00 0.00 2.32
2774 4964 2.223386 TGAGTTAACTTTTGGTGCGCAC 60.223 45.455 32.15 32.15 0.00 5.34
2775 4965 2.017782 TGAGTTAACTTTTGGTGCGCA 58.982 42.857 5.66 5.66 0.00 6.09
2776 4966 2.766970 TGAGTTAACTTTTGGTGCGC 57.233 45.000 10.02 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.