Multiple sequence alignment - TraesCS7B01G147800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G147800 chr7B 100.000 3130 0 0 1 3130 194098125 194101254 0.000000e+00 5781
1 TraesCS7B01G147800 chr7D 91.311 2532 158 34 613 3125 206993695 206991207 0.000000e+00 3400
2 TraesCS7B01G147800 chr7D 89.756 205 21 0 133 337 500932508 500932304 2.390000e-66 263
3 TraesCS7B01G147800 chr7D 85.366 205 25 2 133 337 126668512 126668711 1.140000e-49 207
4 TraesCS7B01G147800 chr7A 91.769 2369 144 36 780 3130 219755760 219753425 0.000000e+00 3247
5 TraesCS7B01G147800 chr7A 84.722 432 45 8 333 748 219756184 219755758 2.250000e-111 412
6 TraesCS7B01G147800 chr7A 78.930 299 40 12 343 619 28920317 28920020 6.900000e-42 182
7 TraesCS7B01G147800 chr6D 89.756 205 21 0 133 337 27834500 27834296 2.390000e-66 263
8 TraesCS7B01G147800 chr6B 84.701 268 36 4 337 602 365708111 365707847 2.390000e-66 263
9 TraesCS7B01G147800 chr6B 83.271 269 35 7 343 602 173376882 173376615 4.030000e-59 239
10 TraesCS7B01G147800 chr6B 82.528 269 37 7 343 602 698112060 698112327 8.730000e-56 228
11 TraesCS7B01G147800 chr2A 88.679 212 24 0 136 347 16143827 16143616 3.100000e-65 259
12 TraesCS7B01G147800 chr1A 89.268 205 21 1 133 337 58404615 58404818 4.010000e-64 255
13 TraesCS7B01G147800 chr5A 87.963 216 25 1 133 347 695770515 695770730 1.440000e-63 254
14 TraesCS7B01G147800 chr5A 88.780 205 23 0 133 337 582853131 582853335 5.180000e-63 252
15 TraesCS7B01G147800 chr5B 84.074 270 30 8 335 593 599308287 599308554 6.700000e-62 248
16 TraesCS7B01G147800 chr3B 88.350 206 24 0 132 337 718783424 718783219 6.700000e-62 248
17 TraesCS7B01G147800 chr3B 81.570 293 47 7 334 619 397547067 397547359 5.220000e-58 235
18 TraesCS7B01G147800 chr3B 94.928 138 5 2 1 137 240405875 240405739 6.800000e-52 215
19 TraesCS7B01G147800 chr3B 94.118 136 6 2 1 135 630285913 630286047 4.090000e-49 206
20 TraesCS7B01G147800 chr3B 90.789 152 10 4 1 150 703723156 703723007 1.900000e-47 200
21 TraesCS7B01G147800 chr4D 81.695 295 42 9 334 618 397076343 397076635 5.220000e-58 235
22 TraesCS7B01G147800 chr4D 82.437 279 37 9 334 602 202238661 202238937 1.880000e-57 233
23 TraesCS7B01G147800 chr4B 81.362 279 40 9 334 602 416119002 416119278 1.890000e-52 217
24 TraesCS7B01G147800 chr4B 94.074 135 6 2 1 134 270122092 270122225 1.470000e-48 204
25 TraesCS7B01G147800 chr4B 92.908 141 8 2 1 140 437611099 437610960 1.470000e-48 204
26 TraesCS7B01G147800 chr4A 81.495 281 36 12 336 602 648887168 648886890 1.890000e-52 217
27 TraesCS7B01G147800 chr2B 94.118 136 6 2 1 135 611025509 611025375 4.090000e-49 206
28 TraesCS7B01G147800 chr2B 93.478 138 7 2 1 137 71224768 71224632 1.470000e-48 204
29 TraesCS7B01G147800 chr2B 93.525 139 6 3 1 138 117937856 117937720 1.470000e-48 204
30 TraesCS7B01G147800 chr1B 92.254 142 9 2 1 141 301568294 301568154 1.900000e-47 200
31 TraesCS7B01G147800 chr3A 86.335 161 18 2 160 316 697232763 697232603 4.150000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G147800 chr7B 194098125 194101254 3129 False 5781.0 5781 100.0000 1 3130 1 chr7B.!!$F1 3129
1 TraesCS7B01G147800 chr7D 206991207 206993695 2488 True 3400.0 3400 91.3110 613 3125 1 chr7D.!!$R1 2512
2 TraesCS7B01G147800 chr7A 219753425 219756184 2759 True 1829.5 3247 88.2455 333 3130 2 chr7A.!!$R2 2797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.249868 TCCTCAGACGCACAGTTTGG 60.250 55.0 0.0 0.0 35.82 3.28 F
269 270 0.322322 TGTTAACGATGTTCCGGCCT 59.678 50.0 0.0 0.0 0.00 5.19 F
1138 1160 0.324460 GGGGACGAGGAGGAAGAGAA 60.324 60.0 0.0 0.0 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1119 1141 0.324460 TTCTCTTCCTCCTCGTCCCC 60.324 60.0 0.0 0.00 0.00 4.81 R
1619 1655 0.813821 GCCCTTCCATTCTGCAAGTC 59.186 55.0 0.0 0.00 33.76 3.01 R
2510 2577 0.324368 ACATCTGGTAGGCTGTCCGA 60.324 55.0 0.0 2.84 37.47 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.857130 GGAGTAGGGTTTTACCTCCATT 57.143 45.455 0.00 0.00 42.09 3.16
22 23 5.963214 GGAGTAGGGTTTTACCTCCATTA 57.037 43.478 0.00 0.00 42.09 1.90
23 24 6.317663 GGAGTAGGGTTTTACCTCCATTAA 57.682 41.667 0.00 0.00 42.09 1.40
24 25 6.724351 GGAGTAGGGTTTTACCTCCATTAAA 58.276 40.000 0.00 0.00 42.09 1.52
25 26 7.177184 GGAGTAGGGTTTTACCTCCATTAAAA 58.823 38.462 0.00 0.00 42.09 1.52
26 27 7.670979 GGAGTAGGGTTTTACCTCCATTAAAAA 59.329 37.037 0.00 0.00 42.09 1.94
27 28 8.645814 AGTAGGGTTTTACCTCCATTAAAAAG 57.354 34.615 0.00 0.00 42.09 2.27
28 29 6.928348 AGGGTTTTACCTCCATTAAAAAGG 57.072 37.500 0.00 0.84 38.64 3.11
29 30 5.783360 AGGGTTTTACCTCCATTAAAAAGGG 59.217 40.000 6.22 0.00 38.64 3.95
30 31 5.484715 GGTTTTACCTCCATTAAAAAGGGC 58.515 41.667 6.22 0.00 34.73 5.19
31 32 5.484715 GTTTTACCTCCATTAAAAAGGGCC 58.515 41.667 0.00 0.00 34.31 5.80
32 33 2.247699 ACCTCCATTAAAAAGGGCCC 57.752 50.000 16.46 16.46 34.31 5.80
33 34 1.111277 CCTCCATTAAAAAGGGCCCG 58.889 55.000 18.44 0.00 0.00 6.13
34 35 1.341581 CCTCCATTAAAAAGGGCCCGA 60.342 52.381 18.44 2.70 0.00 5.14
35 36 2.452505 CTCCATTAAAAAGGGCCCGAA 58.547 47.619 18.44 7.37 0.00 4.30
36 37 2.165641 CTCCATTAAAAAGGGCCCGAAC 59.834 50.000 18.44 0.00 0.00 3.95
37 38 1.206132 CCATTAAAAAGGGCCCGAACC 59.794 52.381 18.44 0.00 0.00 3.62
38 39 2.176045 CATTAAAAAGGGCCCGAACCT 58.824 47.619 18.44 3.70 40.96 3.50
39 40 1.623163 TTAAAAAGGGCCCGAACCTG 58.377 50.000 18.44 0.00 38.63 4.00
40 41 0.251430 TAAAAAGGGCCCGAACCTGG 60.251 55.000 18.44 0.00 38.63 4.45
48 49 2.936928 CCCGAACCTGGGTAAACAC 58.063 57.895 0.00 0.00 44.76 3.32
49 50 0.399075 CCCGAACCTGGGTAAACACT 59.601 55.000 0.00 0.00 44.76 3.55
50 51 1.519408 CCGAACCTGGGTAAACACTG 58.481 55.000 0.00 0.00 0.00 3.66
51 52 1.202722 CCGAACCTGGGTAAACACTGT 60.203 52.381 0.00 0.00 0.00 3.55
52 53 1.871039 CGAACCTGGGTAAACACTGTG 59.129 52.381 6.19 6.19 0.00 3.66
53 54 2.743838 CGAACCTGGGTAAACACTGTGT 60.744 50.000 7.80 7.80 0.00 3.72
54 55 2.632987 ACCTGGGTAAACACTGTGTC 57.367 50.000 14.68 1.56 0.00 3.67
55 56 1.142262 ACCTGGGTAAACACTGTGTCC 59.858 52.381 14.68 11.36 0.00 4.02
56 57 1.544759 CCTGGGTAAACACTGTGTCCC 60.545 57.143 22.77 22.77 35.85 4.46
57 58 1.420138 CTGGGTAAACACTGTGTCCCT 59.580 52.381 26.99 13.83 36.23 4.20
58 59 1.847737 TGGGTAAACACTGTGTCCCTT 59.152 47.619 26.99 16.25 36.23 3.95
59 60 2.158726 TGGGTAAACACTGTGTCCCTTC 60.159 50.000 26.99 13.94 36.23 3.46
60 61 2.105993 GGGTAAACACTGTGTCCCTTCT 59.894 50.000 22.44 2.34 32.89 2.85
61 62 3.434596 GGGTAAACACTGTGTCCCTTCTT 60.435 47.826 22.44 12.08 32.89 2.52
62 63 3.813724 GGTAAACACTGTGTCCCTTCTTC 59.186 47.826 14.68 0.71 0.00 2.87
63 64 3.644966 AAACACTGTGTCCCTTCTTCA 57.355 42.857 14.68 0.00 0.00 3.02
64 65 3.864789 AACACTGTGTCCCTTCTTCAT 57.135 42.857 14.68 0.00 0.00 2.57
65 66 4.974645 AACACTGTGTCCCTTCTTCATA 57.025 40.909 14.68 0.00 0.00 2.15
66 67 4.543590 ACACTGTGTCCCTTCTTCATAG 57.456 45.455 7.80 0.00 0.00 2.23
67 68 3.904339 ACACTGTGTCCCTTCTTCATAGT 59.096 43.478 7.80 0.00 34.77 2.12
68 69 4.348168 ACACTGTGTCCCTTCTTCATAGTT 59.652 41.667 7.80 0.00 32.81 2.24
69 70 5.542635 ACACTGTGTCCCTTCTTCATAGTTA 59.457 40.000 7.80 0.00 32.81 2.24
70 71 5.869888 CACTGTGTCCCTTCTTCATAGTTAC 59.130 44.000 0.00 0.00 32.81 2.50
71 72 5.046520 ACTGTGTCCCTTCTTCATAGTTACC 60.047 44.000 0.00 0.00 31.49 2.85
72 73 4.841813 TGTGTCCCTTCTTCATAGTTACCA 59.158 41.667 0.00 0.00 0.00 3.25
73 74 5.487488 TGTGTCCCTTCTTCATAGTTACCAT 59.513 40.000 0.00 0.00 0.00 3.55
74 75 6.012858 TGTGTCCCTTCTTCATAGTTACCATT 60.013 38.462 0.00 0.00 0.00 3.16
75 76 6.316390 GTGTCCCTTCTTCATAGTTACCATTG 59.684 42.308 0.00 0.00 0.00 2.82
76 77 6.214615 TGTCCCTTCTTCATAGTTACCATTGA 59.785 38.462 0.00 0.00 0.00 2.57
77 78 7.092444 TGTCCCTTCTTCATAGTTACCATTGAT 60.092 37.037 0.00 0.00 0.00 2.57
78 79 7.442666 GTCCCTTCTTCATAGTTACCATTGATC 59.557 40.741 0.00 0.00 0.00 2.92
79 80 6.712547 CCCTTCTTCATAGTTACCATTGATCC 59.287 42.308 0.00 0.00 0.00 3.36
80 81 7.420680 CCCTTCTTCATAGTTACCATTGATCCT 60.421 40.741 0.00 0.00 0.00 3.24
81 82 7.659390 CCTTCTTCATAGTTACCATTGATCCTC 59.341 40.741 0.00 0.00 0.00 3.71
82 83 7.675161 TCTTCATAGTTACCATTGATCCTCA 57.325 36.000 0.00 0.00 0.00 3.86
83 84 7.730084 TCTTCATAGTTACCATTGATCCTCAG 58.270 38.462 0.00 0.00 0.00 3.35
84 85 7.565029 TCTTCATAGTTACCATTGATCCTCAGA 59.435 37.037 0.00 0.00 0.00 3.27
85 86 7.055667 TCATAGTTACCATTGATCCTCAGAC 57.944 40.000 0.00 0.00 0.00 3.51
86 87 4.392921 AGTTACCATTGATCCTCAGACG 57.607 45.455 0.00 0.00 0.00 4.18
87 88 2.866762 GTTACCATTGATCCTCAGACGC 59.133 50.000 0.00 0.00 0.00 5.19
88 89 0.904649 ACCATTGATCCTCAGACGCA 59.095 50.000 0.00 0.00 0.00 5.24
89 90 1.293924 CCATTGATCCTCAGACGCAC 58.706 55.000 0.00 0.00 0.00 5.34
90 91 1.405933 CCATTGATCCTCAGACGCACA 60.406 52.381 0.00 0.00 0.00 4.57
91 92 1.931841 CATTGATCCTCAGACGCACAG 59.068 52.381 0.00 0.00 0.00 3.66
92 93 0.969149 TTGATCCTCAGACGCACAGT 59.031 50.000 0.00 0.00 0.00 3.55
93 94 0.969149 TGATCCTCAGACGCACAGTT 59.031 50.000 0.00 0.00 0.00 3.16
94 95 1.344438 TGATCCTCAGACGCACAGTTT 59.656 47.619 0.00 0.00 0.00 2.66
95 96 1.728971 GATCCTCAGACGCACAGTTTG 59.271 52.381 0.00 0.00 36.39 2.93
96 97 0.249868 TCCTCAGACGCACAGTTTGG 60.250 55.000 0.00 0.00 35.82 3.28
97 98 1.230635 CCTCAGACGCACAGTTTGGG 61.231 60.000 0.00 0.00 43.87 4.12
98 99 1.845809 CTCAGACGCACAGTTTGGGC 61.846 60.000 0.00 0.00 44.98 5.36
99 100 2.594592 AGACGCACAGTTTGGGCC 60.595 61.111 0.00 0.00 45.87 5.80
100 101 3.670377 GACGCACAGTTTGGGCCC 61.670 66.667 17.59 17.59 45.87 5.80
116 117 3.303928 CCCCCTACCCGAGATCGC 61.304 72.222 0.00 0.00 38.18 4.58
117 118 3.303928 CCCCTACCCGAGATCGCC 61.304 72.222 0.00 0.00 38.18 5.54
118 119 3.671411 CCCTACCCGAGATCGCCG 61.671 72.222 0.00 3.98 38.18 6.46
119 120 3.671411 CCTACCCGAGATCGCCGG 61.671 72.222 18.67 18.67 46.10 6.13
120 121 2.905880 CTACCCGAGATCGCCGGT 60.906 66.667 22.07 18.13 45.14 5.28
121 122 2.440796 TACCCGAGATCGCCGGTT 60.441 61.111 22.07 14.32 45.14 4.44
122 123 2.012902 CTACCCGAGATCGCCGGTTT 62.013 60.000 22.07 14.00 45.14 3.27
123 124 1.606885 TACCCGAGATCGCCGGTTTT 61.607 55.000 22.07 12.15 45.14 2.43
124 125 2.461110 CCCGAGATCGCCGGTTTTG 61.461 63.158 22.07 8.36 45.14 2.44
125 126 1.447140 CCGAGATCGCCGGTTTTGA 60.447 57.895 17.74 0.00 41.91 2.69
126 127 1.693083 CCGAGATCGCCGGTTTTGAC 61.693 60.000 17.74 0.00 41.91 3.18
127 128 1.011968 CGAGATCGCCGGTTTTGACA 61.012 55.000 1.90 0.00 0.00 3.58
128 129 0.442699 GAGATCGCCGGTTTTGACAC 59.557 55.000 1.90 0.00 0.00 3.67
129 130 0.953960 AGATCGCCGGTTTTGACACC 60.954 55.000 1.90 0.00 0.00 4.16
138 139 3.268013 GGTTTTGACACCGACAATGAG 57.732 47.619 0.00 0.00 0.00 2.90
139 140 2.616842 GGTTTTGACACCGACAATGAGT 59.383 45.455 0.00 0.00 0.00 3.41
140 141 3.810941 GGTTTTGACACCGACAATGAGTA 59.189 43.478 0.00 0.00 0.00 2.59
141 142 4.454504 GGTTTTGACACCGACAATGAGTAT 59.545 41.667 0.00 0.00 0.00 2.12
142 143 5.390567 GGTTTTGACACCGACAATGAGTATC 60.391 44.000 0.00 0.00 0.00 2.24
143 144 4.801330 TTGACACCGACAATGAGTATCT 57.199 40.909 0.00 0.00 34.92 1.98
144 145 4.371855 TGACACCGACAATGAGTATCTC 57.628 45.455 0.00 0.00 34.92 2.75
145 146 4.017126 TGACACCGACAATGAGTATCTCT 58.983 43.478 0.00 0.00 34.92 3.10
146 147 5.190677 TGACACCGACAATGAGTATCTCTA 58.809 41.667 0.00 0.00 34.92 2.43
147 148 5.650703 TGACACCGACAATGAGTATCTCTAA 59.349 40.000 0.00 0.00 34.92 2.10
148 149 6.137794 ACACCGACAATGAGTATCTCTAAG 57.862 41.667 0.00 0.00 34.92 2.18
149 150 5.886474 ACACCGACAATGAGTATCTCTAAGA 59.114 40.000 0.00 0.00 34.92 2.10
150 151 6.547880 ACACCGACAATGAGTATCTCTAAGAT 59.452 38.462 0.00 0.00 38.70 2.40
151 152 6.860539 CACCGACAATGAGTATCTCTAAGATG 59.139 42.308 0.00 0.00 35.37 2.90
152 153 5.861251 CCGACAATGAGTATCTCTAAGATGC 59.139 44.000 0.00 0.00 37.56 3.91
154 155 7.094592 CCGACAATGAGTATCTCTAAGATGCTA 60.095 40.741 7.42 0.00 45.64 3.49
155 156 8.293157 CGACAATGAGTATCTCTAAGATGCTAA 58.707 37.037 7.42 1.67 45.64 3.09
156 157 9.973450 GACAATGAGTATCTCTAAGATGCTAAA 57.027 33.333 7.42 1.29 45.64 1.85
161 162 9.815306 TGAGTATCTCTAAGATGCTAAATAGGT 57.185 33.333 7.42 0.00 45.64 3.08
184 185 9.981114 AGGTTCAAAATTTCAAAGATTAATCGT 57.019 25.926 9.78 3.84 0.00 3.73
191 192 9.757227 AAATTTCAAAGATTAATCGTTCAACCA 57.243 25.926 12.91 0.00 0.00 3.67
192 193 9.757227 AATTTCAAAGATTAATCGTTCAACCAA 57.243 25.926 12.91 3.93 0.00 3.67
193 194 9.927668 ATTTCAAAGATTAATCGTTCAACCAAT 57.072 25.926 12.91 5.67 0.00 3.16
197 198 9.236691 CAAAGATTAATCGTTCAACCAATATGG 57.763 33.333 12.91 0.00 45.02 2.74
213 214 6.154445 CCAATATGGTAGCTCATTTGATTGC 58.846 40.000 0.00 0.00 31.35 3.56
214 215 6.015688 CCAATATGGTAGCTCATTTGATTGCT 60.016 38.462 0.00 0.00 39.30 3.91
215 216 7.175467 CCAATATGGTAGCTCATTTGATTGCTA 59.825 37.037 0.00 0.00 37.02 3.49
216 217 8.570488 CAATATGGTAGCTCATTTGATTGCTAA 58.430 33.333 0.00 0.00 39.33 3.09
217 218 6.630444 ATGGTAGCTCATTTGATTGCTAAG 57.370 37.500 0.00 0.00 39.33 2.18
218 219 5.500234 TGGTAGCTCATTTGATTGCTAAGT 58.500 37.500 0.00 0.00 39.33 2.24
219 220 6.649155 TGGTAGCTCATTTGATTGCTAAGTA 58.351 36.000 0.00 0.00 39.33 2.24
220 221 6.538742 TGGTAGCTCATTTGATTGCTAAGTAC 59.461 38.462 0.00 0.00 39.33 2.73
221 222 6.538742 GGTAGCTCATTTGATTGCTAAGTACA 59.461 38.462 0.00 0.00 39.33 2.90
222 223 6.674694 AGCTCATTTGATTGCTAAGTACAG 57.325 37.500 0.00 0.00 33.64 2.74
223 224 6.176183 AGCTCATTTGATTGCTAAGTACAGT 58.824 36.000 0.00 0.00 33.64 3.55
224 225 6.656693 AGCTCATTTGATTGCTAAGTACAGTT 59.343 34.615 0.00 0.00 33.64 3.16
225 226 7.175641 AGCTCATTTGATTGCTAAGTACAGTTT 59.824 33.333 0.00 0.00 33.64 2.66
226 227 7.809806 GCTCATTTGATTGCTAAGTACAGTTTT 59.190 33.333 0.00 0.00 0.00 2.43
227 228 9.121517 CTCATTTGATTGCTAAGTACAGTTTTG 57.878 33.333 0.00 0.00 0.00 2.44
228 229 8.845227 TCATTTGATTGCTAAGTACAGTTTTGA 58.155 29.630 0.00 0.00 0.00 2.69
229 230 9.630098 CATTTGATTGCTAAGTACAGTTTTGAT 57.370 29.630 0.00 0.00 0.00 2.57
237 238 9.314321 TGCTAAGTACAGTTTTGATAATAGAGC 57.686 33.333 0.00 0.00 0.00 4.09
238 239 9.314321 GCTAAGTACAGTTTTGATAATAGAGCA 57.686 33.333 0.00 0.00 0.00 4.26
242 243 9.539825 AGTACAGTTTTGATAATAGAGCAGATG 57.460 33.333 0.00 0.00 0.00 2.90
243 244 7.798596 ACAGTTTTGATAATAGAGCAGATGG 57.201 36.000 0.00 0.00 0.00 3.51
244 245 7.341805 ACAGTTTTGATAATAGAGCAGATGGT 58.658 34.615 0.00 0.00 0.00 3.55
245 246 8.486210 ACAGTTTTGATAATAGAGCAGATGGTA 58.514 33.333 0.00 0.00 0.00 3.25
246 247 9.499479 CAGTTTTGATAATAGAGCAGATGGTAT 57.501 33.333 0.00 0.00 0.00 2.73
251 252 9.716531 TTGATAATAGAGCAGATGGTATTCTTG 57.283 33.333 0.00 0.00 0.00 3.02
252 253 8.874156 TGATAATAGAGCAGATGGTATTCTTGT 58.126 33.333 0.00 0.00 0.00 3.16
253 254 9.717942 GATAATAGAGCAGATGGTATTCTTGTT 57.282 33.333 0.00 0.00 0.00 2.83
256 257 8.894768 ATAGAGCAGATGGTATTCTTGTTAAC 57.105 34.615 0.00 0.00 0.00 2.01
257 258 5.812642 AGAGCAGATGGTATTCTTGTTAACG 59.187 40.000 0.26 0.00 0.00 3.18
258 259 5.730550 AGCAGATGGTATTCTTGTTAACGA 58.269 37.500 0.26 0.00 0.00 3.85
259 260 6.349300 AGCAGATGGTATTCTTGTTAACGAT 58.651 36.000 0.26 0.00 0.00 3.73
260 261 6.258727 AGCAGATGGTATTCTTGTTAACGATG 59.741 38.462 0.26 0.00 0.00 3.84
261 262 6.037172 GCAGATGGTATTCTTGTTAACGATGT 59.963 38.462 0.26 0.00 0.00 3.06
262 263 7.414098 GCAGATGGTATTCTTGTTAACGATGTT 60.414 37.037 0.26 0.00 0.00 2.71
263 264 8.116753 CAGATGGTATTCTTGTTAACGATGTTC 58.883 37.037 0.26 0.00 0.00 3.18
264 265 6.730960 TGGTATTCTTGTTAACGATGTTCC 57.269 37.500 0.26 0.00 0.00 3.62
265 266 5.349270 TGGTATTCTTGTTAACGATGTTCCG 59.651 40.000 0.26 0.00 0.00 4.30
266 267 4.939509 ATTCTTGTTAACGATGTTCCGG 57.060 40.909 0.00 0.00 0.00 5.14
267 268 2.070783 TCTTGTTAACGATGTTCCGGC 58.929 47.619 0.00 0.00 0.00 6.13
268 269 1.129811 CTTGTTAACGATGTTCCGGCC 59.870 52.381 0.00 0.00 0.00 6.13
269 270 0.322322 TGTTAACGATGTTCCGGCCT 59.678 50.000 0.00 0.00 0.00 5.19
270 271 0.725117 GTTAACGATGTTCCGGCCTG 59.275 55.000 0.00 0.00 0.00 4.85
271 272 0.322322 TTAACGATGTTCCGGCCTGT 59.678 50.000 0.00 0.00 0.00 4.00
272 273 0.390603 TAACGATGTTCCGGCCTGTG 60.391 55.000 0.00 0.00 0.00 3.66
273 274 2.047274 CGATGTTCCGGCCTGTGT 60.047 61.111 0.00 0.00 0.00 3.72
274 275 2.390599 CGATGTTCCGGCCTGTGTG 61.391 63.158 0.00 0.00 0.00 3.82
275 276 2.034066 ATGTTCCGGCCTGTGTGG 59.966 61.111 0.00 0.00 39.35 4.17
276 277 2.748058 GATGTTCCGGCCTGTGTGGT 62.748 60.000 0.00 0.00 38.35 4.16
277 278 2.978010 GTTCCGGCCTGTGTGGTG 60.978 66.667 0.00 0.00 38.35 4.17
278 279 3.164977 TTCCGGCCTGTGTGGTGA 61.165 61.111 0.00 0.00 38.35 4.02
279 280 2.747443 TTCCGGCCTGTGTGGTGAA 61.747 57.895 0.00 0.00 38.35 3.18
280 281 2.034066 CCGGCCTGTGTGGTGAAT 59.966 61.111 0.00 0.00 38.35 2.57
281 282 1.603455 CCGGCCTGTGTGGTGAATT 60.603 57.895 0.00 0.00 38.35 2.17
282 283 1.178534 CCGGCCTGTGTGGTGAATTT 61.179 55.000 0.00 0.00 38.35 1.82
283 284 0.673437 CGGCCTGTGTGGTGAATTTT 59.327 50.000 0.00 0.00 38.35 1.82
284 285 1.602668 CGGCCTGTGTGGTGAATTTTG 60.603 52.381 0.00 0.00 38.35 2.44
285 286 1.412343 GGCCTGTGTGGTGAATTTTGT 59.588 47.619 0.00 0.00 38.35 2.83
286 287 2.625790 GGCCTGTGTGGTGAATTTTGTA 59.374 45.455 0.00 0.00 38.35 2.41
287 288 3.068873 GGCCTGTGTGGTGAATTTTGTAA 59.931 43.478 0.00 0.00 38.35 2.41
288 289 4.262420 GGCCTGTGTGGTGAATTTTGTAAT 60.262 41.667 0.00 0.00 38.35 1.89
289 290 4.685628 GCCTGTGTGGTGAATTTTGTAATG 59.314 41.667 0.00 0.00 38.35 1.90
290 291 5.508825 GCCTGTGTGGTGAATTTTGTAATGA 60.509 40.000 0.00 0.00 38.35 2.57
291 292 6.151691 CCTGTGTGGTGAATTTTGTAATGAG 58.848 40.000 0.00 0.00 0.00 2.90
292 293 6.239008 CCTGTGTGGTGAATTTTGTAATGAGT 60.239 38.462 0.00 0.00 0.00 3.41
293 294 6.502652 TGTGTGGTGAATTTTGTAATGAGTG 58.497 36.000 0.00 0.00 0.00 3.51
294 295 5.920273 GTGTGGTGAATTTTGTAATGAGTGG 59.080 40.000 0.00 0.00 0.00 4.00
295 296 5.596361 TGTGGTGAATTTTGTAATGAGTGGT 59.404 36.000 0.00 0.00 0.00 4.16
296 297 6.097554 TGTGGTGAATTTTGTAATGAGTGGTT 59.902 34.615 0.00 0.00 0.00 3.67
297 298 6.420604 GTGGTGAATTTTGTAATGAGTGGTTG 59.579 38.462 0.00 0.00 0.00 3.77
298 299 6.097554 TGGTGAATTTTGTAATGAGTGGTTGT 59.902 34.615 0.00 0.00 0.00 3.32
299 300 7.285629 TGGTGAATTTTGTAATGAGTGGTTGTA 59.714 33.333 0.00 0.00 0.00 2.41
300 301 8.138712 GGTGAATTTTGTAATGAGTGGTTGTAA 58.861 33.333 0.00 0.00 0.00 2.41
301 302 9.691362 GTGAATTTTGTAATGAGTGGTTGTAAT 57.309 29.630 0.00 0.00 0.00 1.89
307 308 9.787435 TTTGTAATGAGTGGTTGTAATAACTCT 57.213 29.630 0.00 0.00 39.80 3.24
312 313 8.964476 ATGAGTGGTTGTAATAACTCTATTGG 57.036 34.615 0.00 0.00 39.80 3.16
313 314 7.913789 TGAGTGGTTGTAATAACTCTATTGGT 58.086 34.615 0.00 0.00 39.80 3.67
314 315 8.380099 TGAGTGGTTGTAATAACTCTATTGGTT 58.620 33.333 0.00 0.00 39.80 3.67
315 316 9.880157 GAGTGGTTGTAATAACTCTATTGGTTA 57.120 33.333 0.00 0.00 36.85 2.85
378 379 5.053145 TGTTACAACAAAAATGGACATGCC 58.947 37.500 0.00 0.00 35.67 4.40
393 394 3.285484 ACATGCCTAGCAGGAAATCTTG 58.715 45.455 8.37 0.00 43.36 3.02
479 480 6.548441 TTTACTTGATGGTTAACTGTTCGG 57.452 37.500 5.42 1.34 0.00 4.30
480 481 4.081322 ACTTGATGGTTAACTGTTCGGT 57.919 40.909 5.42 1.86 0.00 4.69
481 482 5.217978 ACTTGATGGTTAACTGTTCGGTA 57.782 39.130 5.42 0.00 0.00 4.02
483 484 6.235664 ACTTGATGGTTAACTGTTCGGTATT 58.764 36.000 5.42 0.00 0.00 1.89
484 485 6.713450 ACTTGATGGTTAACTGTTCGGTATTT 59.287 34.615 5.42 0.00 0.00 1.40
485 486 7.229907 ACTTGATGGTTAACTGTTCGGTATTTT 59.770 33.333 5.42 0.00 0.00 1.82
543 545 5.155278 TGAAAGTTCATAGCCTACCGAAA 57.845 39.130 0.00 0.00 31.01 3.46
554 556 2.878526 GCCTACCGAAACCAGAAACCAT 60.879 50.000 0.00 0.00 0.00 3.55
559 561 5.855740 ACCGAAACCAGAAACCATAAAAA 57.144 34.783 0.00 0.00 0.00 1.94
562 564 4.677832 CGAAACCAGAAACCATAAAAACCG 59.322 41.667 0.00 0.00 0.00 4.44
565 567 6.712179 AACCAGAAACCATAAAAACCGTAA 57.288 33.333 0.00 0.00 0.00 3.18
582 584 4.202172 ACCGTAAAATTGGTTTGGTTCAGG 60.202 41.667 0.00 0.00 33.81 3.86
594 596 5.452216 GGTTTGGTTCAGGTTATTTTCGGTT 60.452 40.000 0.00 0.00 0.00 4.44
660 675 2.124736 GGCCGAGCTACAATGCCA 60.125 61.111 6.58 0.00 41.76 4.92
698 714 2.035442 GGCTTCCGGCTTGTCAGTC 61.035 63.158 0.00 0.00 41.46 3.51
710 726 4.938226 GGCTTGTCAGTCTTAAGCTACAAT 59.062 41.667 0.00 0.00 44.60 2.71
740 756 2.513897 CCCGGCGATCAAGGTTCC 60.514 66.667 9.30 0.00 0.00 3.62
741 757 2.267642 CCGGCGATCAAGGTTCCA 59.732 61.111 9.30 0.00 0.00 3.53
798 814 1.000955 GCATGTAGGGTATGGACCTCG 59.999 57.143 0.00 0.00 46.09 4.63
810 826 0.673956 GGACCTCGAGCCAAGTTTCC 60.674 60.000 6.99 0.00 0.00 3.13
825 841 2.646798 AGTTTCCAAGAGCATCCTTCCT 59.353 45.455 0.00 0.00 33.66 3.36
936 952 3.108847 TCCTTGTCCCAAACCAAAACT 57.891 42.857 0.00 0.00 0.00 2.66
991 1007 4.056125 CTCCACGTCCAGAGCGCA 62.056 66.667 11.47 0.00 0.00 6.09
992 1008 3.978723 CTCCACGTCCAGAGCGCAG 62.979 68.421 11.47 0.00 0.00 5.18
1025 1041 1.450312 CGACCCTGTCATGCCTTCC 60.450 63.158 0.00 0.00 32.09 3.46
1137 1159 1.306970 GGGGACGAGGAGGAAGAGA 59.693 63.158 0.00 0.00 0.00 3.10
1138 1160 0.324460 GGGGACGAGGAGGAAGAGAA 60.324 60.000 0.00 0.00 0.00 2.87
1146 1168 2.997897 AGGAAGAGAAGCGGCGGT 60.998 61.111 5.44 5.44 0.00 5.68
1149 1171 1.664321 GGAAGAGAAGCGGCGGTAGA 61.664 60.000 13.69 0.00 0.00 2.59
1188 1210 4.816984 GGCGACGGAGGAGGAGGA 62.817 72.222 0.00 0.00 0.00 3.71
1191 1213 2.123640 GACGGAGGAGGAGGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
1236 1258 2.165437 GAGGATCGTGAAGCTCAACTCT 59.835 50.000 0.00 0.00 0.00 3.24
1312 1334 1.742831 GGTATTTCTGCCGCAACATCA 59.257 47.619 0.00 0.00 0.00 3.07
1315 1337 2.456594 TTTCTGCCGCAACATCACGC 62.457 55.000 0.00 0.00 0.00 5.34
1349 1371 2.688446 CGGAGATGAGCAAGGTACTACA 59.312 50.000 0.00 0.00 38.49 2.74
1350 1372 3.243234 CGGAGATGAGCAAGGTACTACAG 60.243 52.174 0.00 0.00 38.49 2.74
1351 1373 3.491792 GGAGATGAGCAAGGTACTACAGC 60.492 52.174 0.00 0.00 38.49 4.40
1352 1374 2.432510 AGATGAGCAAGGTACTACAGCC 59.567 50.000 0.00 0.00 38.49 4.85
1379 1408 1.321474 TGCTTGCTGCTGCTACTTTT 58.679 45.000 17.00 0.00 43.37 2.27
1380 1409 1.682854 TGCTTGCTGCTGCTACTTTTT 59.317 42.857 17.00 0.00 43.37 1.94
1413 1444 4.728534 TGTTCTTTTGTTCGTTCTGGTTG 58.271 39.130 0.00 0.00 0.00 3.77
1414 1445 4.216687 TGTTCTTTTGTTCGTTCTGGTTGT 59.783 37.500 0.00 0.00 0.00 3.32
1415 1446 4.349663 TCTTTTGTTCGTTCTGGTTGTG 57.650 40.909 0.00 0.00 0.00 3.33
1416 1447 3.127895 TCTTTTGTTCGTTCTGGTTGTGG 59.872 43.478 0.00 0.00 0.00 4.17
1417 1448 2.116827 TTGTTCGTTCTGGTTGTGGT 57.883 45.000 0.00 0.00 0.00 4.16
1418 1449 2.116827 TGTTCGTTCTGGTTGTGGTT 57.883 45.000 0.00 0.00 0.00 3.67
1555 1587 0.737715 CAAGTGGTCGCTAGGTCTGC 60.738 60.000 0.00 0.00 0.00 4.26
1573 1607 2.599973 CTGCAAAACACTTGTCAGTTGC 59.400 45.455 14.11 14.11 39.04 4.17
1588 1622 0.524604 GTTGCAACGTGTCAACCACC 60.525 55.000 14.90 0.00 41.26 4.61
1719 1755 2.688507 CTGCTCGTCAGGTATGTTGTT 58.311 47.619 0.56 0.00 39.15 2.83
1720 1756 2.412870 TGCTCGTCAGGTATGTTGTTG 58.587 47.619 0.00 0.00 0.00 3.33
1725 1761 2.736721 CGTCAGGTATGTTGTTGTCCAG 59.263 50.000 0.00 0.00 0.00 3.86
1730 1766 4.759693 CAGGTATGTTGTTGTCCAGCTAAA 59.240 41.667 0.00 0.00 0.00 1.85
1739 1776 4.756642 TGTTGTCCAGCTAAACTCTGAATG 59.243 41.667 0.00 0.00 33.54 2.67
1752 1789 0.529378 CTGAATGTGGGCCAGCTTTC 59.471 55.000 6.40 15.48 0.00 2.62
1762 1799 1.235724 GCCAGCTTTCGGTGTTTACT 58.764 50.000 0.00 0.00 36.93 2.24
1763 1800 1.607148 GCCAGCTTTCGGTGTTTACTT 59.393 47.619 0.00 0.00 36.93 2.24
1764 1801 2.034179 GCCAGCTTTCGGTGTTTACTTT 59.966 45.455 0.00 0.00 36.93 2.66
1765 1802 3.251487 GCCAGCTTTCGGTGTTTACTTTA 59.749 43.478 0.00 0.00 36.93 1.85
1766 1803 4.082949 GCCAGCTTTCGGTGTTTACTTTAT 60.083 41.667 0.00 0.00 36.93 1.40
1767 1804 5.122711 GCCAGCTTTCGGTGTTTACTTTATA 59.877 40.000 0.00 0.00 36.93 0.98
1768 1805 6.674760 GCCAGCTTTCGGTGTTTACTTTATAG 60.675 42.308 0.00 0.00 36.93 1.31
1769 1806 6.183360 CCAGCTTTCGGTGTTTACTTTATAGG 60.183 42.308 0.00 0.00 36.93 2.57
1770 1807 5.353400 AGCTTTCGGTGTTTACTTTATAGGC 59.647 40.000 0.00 0.00 0.00 3.93
1771 1808 5.122711 GCTTTCGGTGTTTACTTTATAGGCA 59.877 40.000 0.00 0.00 0.00 4.75
1772 1809 6.484818 TTTCGGTGTTTACTTTATAGGCAC 57.515 37.500 0.00 0.00 0.00 5.01
1773 1810 5.149973 TCGGTGTTTACTTTATAGGCACA 57.850 39.130 0.00 0.00 0.00 4.57
1774 1811 5.736813 TCGGTGTTTACTTTATAGGCACAT 58.263 37.500 0.00 0.00 0.00 3.21
1775 1812 6.174760 TCGGTGTTTACTTTATAGGCACATT 58.825 36.000 0.00 0.00 0.00 2.71
1776 1813 6.655848 TCGGTGTTTACTTTATAGGCACATTT 59.344 34.615 0.00 0.00 0.00 2.32
1777 1814 7.175293 TCGGTGTTTACTTTATAGGCACATTTT 59.825 33.333 0.00 0.00 0.00 1.82
1778 1815 7.483691 CGGTGTTTACTTTATAGGCACATTTTC 59.516 37.037 0.00 0.00 0.00 2.29
1779 1816 7.758076 GGTGTTTACTTTATAGGCACATTTTCC 59.242 37.037 0.00 0.00 0.00 3.13
1780 1817 8.301002 GTGTTTACTTTATAGGCACATTTTCCA 58.699 33.333 0.00 0.00 0.00 3.53
1781 1818 9.030452 TGTTTACTTTATAGGCACATTTTCCAT 57.970 29.630 0.00 0.00 0.00 3.41
1782 1819 9.869757 GTTTACTTTATAGGCACATTTTCCATT 57.130 29.630 0.00 0.00 0.00 3.16
1784 1821 7.112452 ACTTTATAGGCACATTTTCCATTCC 57.888 36.000 0.00 0.00 0.00 3.01
1785 1822 6.667414 ACTTTATAGGCACATTTTCCATTCCA 59.333 34.615 0.00 0.00 0.00 3.53
1786 1823 6.463995 TTATAGGCACATTTTCCATTCCAC 57.536 37.500 0.00 0.00 0.00 4.02
1787 1824 2.607499 AGGCACATTTTCCATTCCACA 58.393 42.857 0.00 0.00 0.00 4.17
1788 1825 3.175594 AGGCACATTTTCCATTCCACAT 58.824 40.909 0.00 0.00 0.00 3.21
1789 1826 4.352009 AGGCACATTTTCCATTCCACATA 58.648 39.130 0.00 0.00 0.00 2.29
1790 1827 4.776837 AGGCACATTTTCCATTCCACATAA 59.223 37.500 0.00 0.00 0.00 1.90
1793 1830 6.165577 GCACATTTTCCATTCCACATAACTT 58.834 36.000 0.00 0.00 0.00 2.66
1823 1867 5.277974 GCAATTTAGACAGCAGAGACACAAA 60.278 40.000 0.00 0.00 0.00 2.83
1824 1868 6.728200 CAATTTAGACAGCAGAGACACAAAA 58.272 36.000 0.00 0.00 0.00 2.44
1827 1871 6.942532 TTAGACAGCAGAGACACAAAATTT 57.057 33.333 0.00 0.00 0.00 1.82
1828 1872 5.429957 AGACAGCAGAGACACAAAATTTC 57.570 39.130 0.00 0.00 0.00 2.17
1829 1873 5.128919 AGACAGCAGAGACACAAAATTTCT 58.871 37.500 0.00 0.00 0.00 2.52
1830 1874 5.008415 AGACAGCAGAGACACAAAATTTCTG 59.992 40.000 0.00 0.00 38.57 3.02
1831 1875 4.883585 ACAGCAGAGACACAAAATTTCTGA 59.116 37.500 5.44 0.00 37.96 3.27
1833 1877 5.008415 CAGCAGAGACACAAAATTTCTGACT 59.992 40.000 5.44 3.62 37.96 3.41
1834 1878 5.238214 AGCAGAGACACAAAATTTCTGACTC 59.762 40.000 14.84 14.84 37.96 3.36
1835 1879 5.238214 GCAGAGACACAAAATTTCTGACTCT 59.762 40.000 17.48 17.48 37.96 3.24
1836 1880 6.656945 CAGAGACACAAAATTTCTGACTCTG 58.343 40.000 25.76 25.76 41.28 3.35
1838 1882 6.825721 AGAGACACAAAATTTCTGACTCTGTT 59.174 34.615 20.21 6.46 32.23 3.16
1839 1883 6.789262 AGACACAAAATTTCTGACTCTGTTG 58.211 36.000 0.00 0.00 0.00 3.33
1840 1884 5.894807 ACACAAAATTTCTGACTCTGTTGG 58.105 37.500 0.00 0.00 0.00 3.77
1907 1966 6.617371 AGGATTCTACAGATGATTTACCAGGT 59.383 38.462 0.00 0.00 0.00 4.00
1932 1991 1.180029 TGGTACACTCCTAGCGAACC 58.820 55.000 0.00 0.00 0.00 3.62
1941 2003 2.083774 TCCTAGCGAACCAAAATGCAG 58.916 47.619 0.00 0.00 0.00 4.41
1945 2007 1.537202 AGCGAACCAAAATGCAGAGAC 59.463 47.619 0.00 0.00 0.00 3.36
1976 2038 4.985044 ATGACTCGACTTTTGTTTACCG 57.015 40.909 0.00 0.00 0.00 4.02
1997 2059 2.785868 GCAGAATCTGGATGCGGTT 58.214 52.632 12.66 0.00 31.21 4.44
2019 2081 2.132740 TTTGATCGTGGCAAACAAGC 57.867 45.000 0.00 0.00 30.87 4.01
2136 2198 6.870971 TGTTTAACAACTTGTAGGTCCATC 57.129 37.500 0.00 0.00 33.58 3.51
2161 2223 2.359850 GCAAGGCCACACCGATGA 60.360 61.111 5.01 0.00 46.52 2.92
2179 2241 5.526479 CCGATGATTCACAGAATTCTGATGT 59.474 40.000 36.15 20.51 46.59 3.06
2207 2269 7.767659 CAGATACCAGAATCTCTTGTGAAATGA 59.232 37.037 0.00 0.00 33.87 2.57
2208 2270 8.324306 AGATACCAGAATCTCTTGTGAAATGAA 58.676 33.333 0.00 0.00 30.09 2.57
2215 2277 7.339721 AGAATCTCTTGTGAAATGAATCAGCAT 59.660 33.333 0.00 0.00 0.00 3.79
2219 2281 4.729227 TGTGAAATGAATCAGCATGCAT 57.271 36.364 21.98 1.94 34.76 3.96
2230 2292 8.173542 TGAATCAGCATGCATAATGACTTTAT 57.826 30.769 21.98 0.00 38.72 1.40
2269 2334 3.270877 CATAGCAGGGTAGTTGTTGGTC 58.729 50.000 0.00 0.00 0.00 4.02
2270 2335 1.136828 AGCAGGGTAGTTGTTGGTCA 58.863 50.000 0.00 0.00 0.00 4.02
2329 2395 3.367025 CCGGAGACACAATTTAGAACGAC 59.633 47.826 0.00 0.00 0.00 4.34
2475 2542 9.255304 GGTTGCTGAATTTACATCAAAGTTAAA 57.745 29.630 0.00 0.00 29.87 1.52
2510 2577 8.345565 CACTTTCTCTTACTGTTGCTACAAATT 58.654 33.333 1.93 0.00 32.92 1.82
2530 2597 0.179100 CGGACAGCCTACCAGATGTG 60.179 60.000 0.00 0.00 0.00 3.21
2531 2598 1.195115 GGACAGCCTACCAGATGTGA 58.805 55.000 0.00 0.00 0.00 3.58
2573 2640 7.766278 ACCAAACTAGACAATATGCAGAACTAG 59.234 37.037 0.00 3.43 34.14 2.57
2723 2790 2.919602 ACCAGGATGTTAGACCAACCAT 59.080 45.455 0.00 0.00 36.20 3.55
2772 2839 7.384115 GGCACTCGTATTAGATATAAGCAAACA 59.616 37.037 0.00 0.00 0.00 2.83
2961 3030 5.399113 AGGATATTCTTAGGAGGGAGTCAC 58.601 45.833 0.00 0.00 0.00 3.67
3048 3117 1.194772 GGAGCAGTTACGCTTTCACAC 59.805 52.381 3.62 0.00 44.01 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.857130 AATGGAGGTAAAACCCTACTCC 57.143 45.455 0.00 0.00 39.75 3.85
1 2 8.640063 TTTTTAATGGAGGTAAAACCCTACTC 57.360 34.615 0.00 0.00 39.75 2.59
2 3 7.672660 CCTTTTTAATGGAGGTAAAACCCTACT 59.327 37.037 0.00 0.00 39.75 2.57
4 5 6.955267 CCCTTTTTAATGGAGGTAAAACCCTA 59.045 38.462 0.00 0.00 39.75 3.53
5 6 5.783360 CCCTTTTTAATGGAGGTAAAACCCT 59.217 40.000 0.00 0.00 39.75 4.34
6 7 5.570034 GCCCTTTTTAATGGAGGTAAAACCC 60.570 44.000 0.00 0.00 39.75 4.11
7 8 5.484715 GCCCTTTTTAATGGAGGTAAAACC 58.515 41.667 0.00 0.00 38.99 3.27
8 9 5.484715 GGCCCTTTTTAATGGAGGTAAAAC 58.515 41.667 0.00 0.00 31.78 2.43
9 10 4.532916 GGGCCCTTTTTAATGGAGGTAAAA 59.467 41.667 17.04 0.00 0.00 1.52
10 11 4.098155 GGGCCCTTTTTAATGGAGGTAAA 58.902 43.478 17.04 0.00 0.00 2.01
11 12 3.715287 GGGCCCTTTTTAATGGAGGTAA 58.285 45.455 17.04 0.00 0.00 2.85
12 13 2.357361 CGGGCCCTTTTTAATGGAGGTA 60.357 50.000 22.43 0.00 0.00 3.08
13 14 1.618616 CGGGCCCTTTTTAATGGAGGT 60.619 52.381 22.43 0.00 0.00 3.85
14 15 1.111277 CGGGCCCTTTTTAATGGAGG 58.889 55.000 22.43 0.00 0.00 4.30
15 16 2.137810 TCGGGCCCTTTTTAATGGAG 57.862 50.000 22.43 0.00 0.00 3.86
16 17 2.172679 GTTCGGGCCCTTTTTAATGGA 58.827 47.619 22.43 2.67 0.00 3.41
17 18 1.206132 GGTTCGGGCCCTTTTTAATGG 59.794 52.381 22.43 0.00 0.00 3.16
18 19 2.094234 CAGGTTCGGGCCCTTTTTAATG 60.094 50.000 22.43 6.05 0.00 1.90
19 20 2.176045 CAGGTTCGGGCCCTTTTTAAT 58.824 47.619 22.43 0.00 0.00 1.40
20 21 1.623163 CAGGTTCGGGCCCTTTTTAA 58.377 50.000 22.43 3.13 0.00 1.52
21 22 0.251430 CCAGGTTCGGGCCCTTTTTA 60.251 55.000 22.43 0.00 0.00 1.52
22 23 1.533033 CCAGGTTCGGGCCCTTTTT 60.533 57.895 22.43 0.00 0.00 1.94
23 24 2.117423 CCAGGTTCGGGCCCTTTT 59.883 61.111 22.43 0.00 0.00 2.27
24 25 3.979497 CCCAGGTTCGGGCCCTTT 61.979 66.667 22.43 0.00 40.07 3.11
31 32 1.202722 ACAGTGTTTACCCAGGTTCGG 60.203 52.381 0.00 0.00 0.00 4.30
32 33 1.871039 CACAGTGTTTACCCAGGTTCG 59.129 52.381 0.00 0.00 0.00 3.95
33 34 2.876550 GACACAGTGTTTACCCAGGTTC 59.123 50.000 7.86 0.00 0.00 3.62
34 35 2.422377 GGACACAGTGTTTACCCAGGTT 60.422 50.000 7.86 0.00 0.00 3.50
35 36 1.142262 GGACACAGTGTTTACCCAGGT 59.858 52.381 7.86 0.00 0.00 4.00
36 37 1.544759 GGGACACAGTGTTTACCCAGG 60.545 57.143 19.79 0.00 37.50 4.45
37 38 1.420138 AGGGACACAGTGTTTACCCAG 59.580 52.381 24.42 3.15 39.73 4.45
38 39 1.513858 AGGGACACAGTGTTTACCCA 58.486 50.000 24.42 0.00 39.73 4.51
39 40 2.105993 AGAAGGGACACAGTGTTTACCC 59.894 50.000 17.81 17.81 37.79 3.69
40 41 3.487120 AGAAGGGACACAGTGTTTACC 57.513 47.619 7.86 10.87 0.00 2.85
41 42 4.448210 TGAAGAAGGGACACAGTGTTTAC 58.552 43.478 7.86 1.61 0.00 2.01
42 43 4.764050 TGAAGAAGGGACACAGTGTTTA 57.236 40.909 7.86 0.00 0.00 2.01
43 44 3.644966 TGAAGAAGGGACACAGTGTTT 57.355 42.857 7.86 0.00 0.00 2.83
44 45 3.864789 ATGAAGAAGGGACACAGTGTT 57.135 42.857 7.86 0.00 0.00 3.32
45 46 3.904339 ACTATGAAGAAGGGACACAGTGT 59.096 43.478 5.68 5.68 0.00 3.55
46 47 4.543590 ACTATGAAGAAGGGACACAGTG 57.456 45.455 0.00 0.00 0.00 3.66
47 48 5.046520 GGTAACTATGAAGAAGGGACACAGT 60.047 44.000 0.00 0.00 0.00 3.55
48 49 5.046591 TGGTAACTATGAAGAAGGGACACAG 60.047 44.000 0.00 0.00 37.61 3.66
49 50 4.841813 TGGTAACTATGAAGAAGGGACACA 59.158 41.667 0.00 0.00 37.61 3.72
50 51 5.416271 TGGTAACTATGAAGAAGGGACAC 57.584 43.478 0.00 0.00 37.61 3.67
51 52 6.214615 TCAATGGTAACTATGAAGAAGGGACA 59.785 38.462 0.00 0.00 37.61 4.02
52 53 6.650120 TCAATGGTAACTATGAAGAAGGGAC 58.350 40.000 0.00 0.00 37.61 4.46
53 54 6.884472 TCAATGGTAACTATGAAGAAGGGA 57.116 37.500 0.00 0.00 37.61 4.20
54 55 6.712547 GGATCAATGGTAACTATGAAGAAGGG 59.287 42.308 0.00 0.00 35.91 3.95
55 56 7.512992 AGGATCAATGGTAACTATGAAGAAGG 58.487 38.462 0.00 0.00 35.91 3.46
56 57 8.206867 TGAGGATCAATGGTAACTATGAAGAAG 58.793 37.037 0.00 0.00 45.97 2.85
57 58 8.089625 TGAGGATCAATGGTAACTATGAAGAA 57.910 34.615 0.00 0.00 45.97 2.52
58 59 7.675161 TGAGGATCAATGGTAACTATGAAGA 57.325 36.000 0.00 0.00 45.97 2.87
75 76 1.728971 CAAACTGTGCGTCTGAGGATC 59.271 52.381 0.82 0.00 0.00 3.36
76 77 1.609061 CCAAACTGTGCGTCTGAGGAT 60.609 52.381 0.82 0.00 0.00 3.24
77 78 0.249868 CCAAACTGTGCGTCTGAGGA 60.250 55.000 0.82 0.00 0.00 3.71
78 79 1.230635 CCCAAACTGTGCGTCTGAGG 61.231 60.000 0.00 0.00 0.00 3.86
79 80 1.845809 GCCCAAACTGTGCGTCTGAG 61.846 60.000 0.00 0.00 0.00 3.35
80 81 1.891919 GCCCAAACTGTGCGTCTGA 60.892 57.895 0.00 0.00 0.00 3.27
81 82 2.639286 GCCCAAACTGTGCGTCTG 59.361 61.111 0.00 0.00 0.00 3.51
82 83 2.594592 GGCCCAAACTGTGCGTCT 60.595 61.111 0.00 0.00 0.00 4.18
83 84 3.670377 GGGCCCAAACTGTGCGTC 61.670 66.667 19.95 0.00 0.00 5.19
99 100 3.303928 GCGATCTCGGGTAGGGGG 61.304 72.222 1.34 0.00 40.23 5.40
100 101 3.303928 GGCGATCTCGGGTAGGGG 61.304 72.222 1.34 0.00 40.23 4.79
101 102 3.671411 CGGCGATCTCGGGTAGGG 61.671 72.222 0.00 0.00 40.23 3.53
102 103 3.671411 CCGGCGATCTCGGGTAGG 61.671 72.222 9.30 0.00 43.45 3.18
103 104 2.487532 AACCGGCGATCTCGGGTAG 61.488 63.158 22.42 4.33 46.96 3.18
104 105 2.440796 AACCGGCGATCTCGGGTA 60.441 61.111 22.42 0.00 46.96 3.69
108 109 1.011968 TGTCAAAACCGGCGATCTCG 61.012 55.000 9.30 0.00 43.27 4.04
109 110 0.442699 GTGTCAAAACCGGCGATCTC 59.557 55.000 9.30 0.00 0.00 2.75
110 111 0.953960 GGTGTCAAAACCGGCGATCT 60.954 55.000 9.30 0.00 0.00 2.75
111 112 1.500396 GGTGTCAAAACCGGCGATC 59.500 57.895 9.30 0.00 0.00 3.69
112 113 3.663202 GGTGTCAAAACCGGCGAT 58.337 55.556 9.30 0.00 0.00 4.58
118 119 2.616842 ACTCATTGTCGGTGTCAAAACC 59.383 45.455 0.00 0.00 36.82 3.27
119 120 3.963383 ACTCATTGTCGGTGTCAAAAC 57.037 42.857 0.00 0.00 0.00 2.43
120 121 5.547465 AGATACTCATTGTCGGTGTCAAAA 58.453 37.500 0.00 0.00 0.00 2.44
121 122 5.047306 AGAGATACTCATTGTCGGTGTCAAA 60.047 40.000 0.00 0.00 32.06 2.69
122 123 4.462834 AGAGATACTCATTGTCGGTGTCAA 59.537 41.667 0.00 0.00 32.06 3.18
123 124 4.017126 AGAGATACTCATTGTCGGTGTCA 58.983 43.478 0.00 0.00 32.06 3.58
124 125 4.640789 AGAGATACTCATTGTCGGTGTC 57.359 45.455 0.00 0.00 32.06 3.67
125 126 5.886474 TCTTAGAGATACTCATTGTCGGTGT 59.114 40.000 0.00 0.00 32.06 4.16
126 127 6.378710 TCTTAGAGATACTCATTGTCGGTG 57.621 41.667 0.00 0.00 32.06 4.94
127 128 6.515862 GCATCTTAGAGATACTCATTGTCGGT 60.516 42.308 0.00 0.00 32.12 4.69
128 129 5.861251 GCATCTTAGAGATACTCATTGTCGG 59.139 44.000 0.00 0.00 32.12 4.79
129 130 6.676950 AGCATCTTAGAGATACTCATTGTCG 58.323 40.000 0.00 0.00 32.12 4.35
130 131 9.973450 TTTAGCATCTTAGAGATACTCATTGTC 57.027 33.333 0.00 0.00 32.12 3.18
135 136 9.815306 ACCTATTTAGCATCTTAGAGATACTCA 57.185 33.333 0.00 0.00 32.12 3.41
158 159 9.981114 ACGATTAATCTTTGAAATTTTGAACCT 57.019 25.926 13.45 0.00 0.00 3.50
165 166 9.757227 TGGTTGAACGATTAATCTTTGAAATTT 57.243 25.926 11.57 0.00 0.00 1.82
166 167 9.757227 TTGGTTGAACGATTAATCTTTGAAATT 57.243 25.926 11.57 0.00 0.00 1.82
167 168 9.927668 ATTGGTTGAACGATTAATCTTTGAAAT 57.072 25.926 11.57 0.00 0.00 2.17
171 172 9.236691 CCATATTGGTTGAACGATTAATCTTTG 57.763 33.333 11.57 0.07 31.35 2.77
189 190 6.015688 AGCAATCAAATGAGCTACCATATTGG 60.016 38.462 9.62 0.00 45.02 3.16
190 191 6.978338 AGCAATCAAATGAGCTACCATATTG 58.022 36.000 0.00 0.00 35.19 1.90
191 192 8.696043 TTAGCAATCAAATGAGCTACCATATT 57.304 30.769 4.42 0.00 39.11 1.28
192 193 7.941238 ACTTAGCAATCAAATGAGCTACCATAT 59.059 33.333 4.42 0.00 39.11 1.78
193 194 7.282585 ACTTAGCAATCAAATGAGCTACCATA 58.717 34.615 4.42 0.00 39.11 2.74
194 195 6.125029 ACTTAGCAATCAAATGAGCTACCAT 58.875 36.000 4.42 0.00 39.11 3.55
195 196 5.500234 ACTTAGCAATCAAATGAGCTACCA 58.500 37.500 4.42 0.00 39.11 3.25
196 197 6.538742 TGTACTTAGCAATCAAATGAGCTACC 59.461 38.462 4.42 0.00 39.11 3.18
197 198 7.278868 ACTGTACTTAGCAATCAAATGAGCTAC 59.721 37.037 4.42 0.00 39.11 3.58
198 199 7.331026 ACTGTACTTAGCAATCAAATGAGCTA 58.669 34.615 0.00 1.49 38.47 3.32
199 200 6.176183 ACTGTACTTAGCAATCAAATGAGCT 58.824 36.000 0.00 0.00 40.92 4.09
200 201 6.428385 ACTGTACTTAGCAATCAAATGAGC 57.572 37.500 0.00 0.00 0.00 4.26
201 202 9.121517 CAAAACTGTACTTAGCAATCAAATGAG 57.878 33.333 0.00 0.00 0.00 2.90
202 203 8.845227 TCAAAACTGTACTTAGCAATCAAATGA 58.155 29.630 0.00 0.00 0.00 2.57
203 204 9.630098 ATCAAAACTGTACTTAGCAATCAAATG 57.370 29.630 0.00 0.00 0.00 2.32
211 212 9.314321 GCTCTATTATCAAAACTGTACTTAGCA 57.686 33.333 0.00 0.00 0.00 3.49
212 213 9.314321 TGCTCTATTATCAAAACTGTACTTAGC 57.686 33.333 0.00 0.00 0.00 3.09
216 217 9.539825 CATCTGCTCTATTATCAAAACTGTACT 57.460 33.333 0.00 0.00 0.00 2.73
217 218 8.768955 CCATCTGCTCTATTATCAAAACTGTAC 58.231 37.037 0.00 0.00 0.00 2.90
218 219 8.486210 ACCATCTGCTCTATTATCAAAACTGTA 58.514 33.333 0.00 0.00 0.00 2.74
219 220 7.341805 ACCATCTGCTCTATTATCAAAACTGT 58.658 34.615 0.00 0.00 0.00 3.55
220 221 7.798596 ACCATCTGCTCTATTATCAAAACTG 57.201 36.000 0.00 0.00 0.00 3.16
225 226 9.716531 CAAGAATACCATCTGCTCTATTATCAA 57.283 33.333 0.00 0.00 0.00 2.57
226 227 8.874156 ACAAGAATACCATCTGCTCTATTATCA 58.126 33.333 0.00 0.00 0.00 2.15
227 228 9.717942 AACAAGAATACCATCTGCTCTATTATC 57.282 33.333 0.00 0.00 0.00 1.75
230 231 9.331282 GTTAACAAGAATACCATCTGCTCTATT 57.669 33.333 0.00 0.00 0.00 1.73
231 232 7.653713 CGTTAACAAGAATACCATCTGCTCTAT 59.346 37.037 6.39 0.00 0.00 1.98
232 233 6.978659 CGTTAACAAGAATACCATCTGCTCTA 59.021 38.462 6.39 0.00 0.00 2.43
233 234 5.812642 CGTTAACAAGAATACCATCTGCTCT 59.187 40.000 6.39 0.00 0.00 4.09
234 235 5.810587 TCGTTAACAAGAATACCATCTGCTC 59.189 40.000 6.39 0.00 0.00 4.26
235 236 5.730550 TCGTTAACAAGAATACCATCTGCT 58.269 37.500 6.39 0.00 0.00 4.24
236 237 6.037172 ACATCGTTAACAAGAATACCATCTGC 59.963 38.462 6.39 0.00 0.00 4.26
237 238 7.539712 ACATCGTTAACAAGAATACCATCTG 57.460 36.000 6.39 0.00 0.00 2.90
238 239 7.280205 GGAACATCGTTAACAAGAATACCATCT 59.720 37.037 6.39 0.00 0.00 2.90
239 240 7.407337 GGAACATCGTTAACAAGAATACCATC 58.593 38.462 6.39 0.00 0.00 3.51
240 241 6.036735 CGGAACATCGTTAACAAGAATACCAT 59.963 38.462 6.39 0.00 0.00 3.55
241 242 5.349270 CGGAACATCGTTAACAAGAATACCA 59.651 40.000 6.39 0.00 0.00 3.25
242 243 5.220529 CCGGAACATCGTTAACAAGAATACC 60.221 44.000 6.39 0.23 0.00 2.73
243 244 5.725864 GCCGGAACATCGTTAACAAGAATAC 60.726 44.000 5.05 0.00 0.00 1.89
244 245 4.330620 GCCGGAACATCGTTAACAAGAATA 59.669 41.667 5.05 0.00 0.00 1.75
245 246 3.126343 GCCGGAACATCGTTAACAAGAAT 59.874 43.478 5.05 0.00 0.00 2.40
246 247 2.481185 GCCGGAACATCGTTAACAAGAA 59.519 45.455 5.05 0.00 0.00 2.52
247 248 2.070783 GCCGGAACATCGTTAACAAGA 58.929 47.619 5.05 0.00 0.00 3.02
248 249 1.129811 GGCCGGAACATCGTTAACAAG 59.870 52.381 5.05 0.00 0.00 3.16
249 250 1.158434 GGCCGGAACATCGTTAACAA 58.842 50.000 5.05 0.00 0.00 2.83
250 251 0.322322 AGGCCGGAACATCGTTAACA 59.678 50.000 5.05 0.00 0.00 2.41
251 252 0.725117 CAGGCCGGAACATCGTTAAC 59.275 55.000 5.05 0.00 0.00 2.01
252 253 0.322322 ACAGGCCGGAACATCGTTAA 59.678 50.000 10.86 0.00 0.00 2.01
253 254 0.390603 CACAGGCCGGAACATCGTTA 60.391 55.000 10.86 0.00 0.00 3.18
254 255 1.671054 CACAGGCCGGAACATCGTT 60.671 57.895 10.86 0.00 0.00 3.85
255 256 2.047274 CACAGGCCGGAACATCGT 60.047 61.111 10.86 0.00 0.00 3.73
256 257 2.047274 ACACAGGCCGGAACATCG 60.047 61.111 10.86 0.00 0.00 3.84
257 258 2.040544 CCACACAGGCCGGAACATC 61.041 63.158 10.86 0.00 0.00 3.06
258 259 2.034066 CCACACAGGCCGGAACAT 59.966 61.111 10.86 0.00 0.00 2.71
259 260 3.484806 ACCACACAGGCCGGAACA 61.485 61.111 10.86 0.00 43.14 3.18
260 261 2.951475 TTCACCACACAGGCCGGAAC 62.951 60.000 10.86 0.00 43.14 3.62
261 262 2.063015 ATTCACCACACAGGCCGGAA 62.063 55.000 10.86 0.00 43.14 4.30
262 263 2.063015 AATTCACCACACAGGCCGGA 62.063 55.000 10.86 0.00 43.14 5.14
263 264 1.178534 AAATTCACCACACAGGCCGG 61.179 55.000 0.00 0.00 43.14 6.13
264 265 0.673437 AAAATTCACCACACAGGCCG 59.327 50.000 0.00 0.00 43.14 6.13
265 266 1.412343 ACAAAATTCACCACACAGGCC 59.588 47.619 0.00 0.00 43.14 5.19
266 267 2.888834 ACAAAATTCACCACACAGGC 57.111 45.000 0.00 0.00 43.14 4.85
267 268 6.083098 TCATTACAAAATTCACCACACAGG 57.917 37.500 0.00 0.00 45.67 4.00
268 269 6.638063 CACTCATTACAAAATTCACCACACAG 59.362 38.462 0.00 0.00 0.00 3.66
269 270 6.460814 CCACTCATTACAAAATTCACCACACA 60.461 38.462 0.00 0.00 0.00 3.72
270 271 5.920273 CCACTCATTACAAAATTCACCACAC 59.080 40.000 0.00 0.00 0.00 3.82
271 272 5.596361 ACCACTCATTACAAAATTCACCACA 59.404 36.000 0.00 0.00 0.00 4.17
272 273 6.084326 ACCACTCATTACAAAATTCACCAC 57.916 37.500 0.00 0.00 0.00 4.16
273 274 6.097554 ACAACCACTCATTACAAAATTCACCA 59.902 34.615 0.00 0.00 0.00 4.17
274 275 6.512297 ACAACCACTCATTACAAAATTCACC 58.488 36.000 0.00 0.00 0.00 4.02
275 276 9.691362 ATTACAACCACTCATTACAAAATTCAC 57.309 29.630 0.00 0.00 0.00 3.18
281 282 9.787435 AGAGTTATTACAACCACTCATTACAAA 57.213 29.630 0.00 0.00 38.53 2.83
286 287 9.396022 CCAATAGAGTTATTACAACCACTCATT 57.604 33.333 0.00 0.00 38.53 2.57
287 288 8.548877 ACCAATAGAGTTATTACAACCACTCAT 58.451 33.333 0.00 0.00 38.53 2.90
288 289 7.913789 ACCAATAGAGTTATTACAACCACTCA 58.086 34.615 0.00 0.00 38.53 3.41
289 290 8.788325 AACCAATAGAGTTATTACAACCACTC 57.212 34.615 0.00 0.00 36.66 3.51
353 354 6.870965 GGCATGTCCATTTTTGTTGTAACATA 59.129 34.615 0.00 0.00 35.10 2.29
363 364 3.429822 CCTGCTAGGCATGTCCATTTTTG 60.430 47.826 8.58 0.00 38.13 2.44
374 375 2.091994 AGCAAGATTTCCTGCTAGGCAT 60.092 45.455 1.85 0.00 38.13 4.40
375 376 1.283029 AGCAAGATTTCCTGCTAGGCA 59.717 47.619 1.85 0.00 34.61 4.75
378 379 4.094590 CACAAGAGCAAGATTTCCTGCTAG 59.905 45.833 3.73 1.19 37.79 3.42
393 394 8.748380 AATAGTTATTTTTCTTGCACAAGAGC 57.252 30.769 12.51 0.00 46.80 4.09
454 455 7.067251 ACCGAACAGTTAACCATCAAGTAAAAA 59.933 33.333 0.88 0.00 0.00 1.94
463 464 6.072342 ACCAAAATACCGAACAGTTAACCATC 60.072 38.462 0.88 0.00 0.00 3.51
465 466 5.131784 ACCAAAATACCGAACAGTTAACCA 58.868 37.500 0.88 0.00 0.00 3.67
466 467 5.694231 ACCAAAATACCGAACAGTTAACC 57.306 39.130 0.88 0.00 0.00 2.85
469 470 9.762933 GGTATATACCAAAATACCGAACAGTTA 57.237 33.333 24.46 0.00 45.73 2.24
470 471 8.667076 GGTATATACCAAAATACCGAACAGTT 57.333 34.615 24.46 0.00 45.73 3.16
511 512 7.107542 AGGCTATGAACTTTCATACGGTTTTA 58.892 34.615 7.46 0.00 45.54 1.52
516 517 4.989168 GGTAGGCTATGAACTTTCATACGG 59.011 45.833 7.46 1.85 45.54 4.02
517 518 4.680110 CGGTAGGCTATGAACTTTCATACG 59.320 45.833 7.46 5.61 45.54 3.06
519 520 6.474140 TTCGGTAGGCTATGAACTTTCATA 57.526 37.500 10.54 10.54 45.54 2.15
526 527 3.118884 TCTGGTTTCGGTAGGCTATGAAC 60.119 47.826 10.55 7.40 0.00 3.18
533 535 1.162698 GGTTTCTGGTTTCGGTAGGC 58.837 55.000 0.00 0.00 0.00 3.93
535 537 6.563222 TTTTATGGTTTCTGGTTTCGGTAG 57.437 37.500 0.00 0.00 0.00 3.18
543 545 6.712179 TTTACGGTTTTTATGGTTTCTGGT 57.288 33.333 0.00 0.00 0.00 4.00
559 561 4.202172 CCTGAACCAAACCAATTTTACGGT 60.202 41.667 0.00 0.00 36.98 4.83
562 564 8.896320 AATAACCTGAACCAAACCAATTTTAC 57.104 30.769 0.00 0.00 0.00 2.01
565 567 7.225734 CGAAAATAACCTGAACCAAACCAATTT 59.774 33.333 0.00 0.00 0.00 1.82
574 576 4.038162 CCAAACCGAAAATAACCTGAACCA 59.962 41.667 0.00 0.00 0.00 3.67
582 584 9.160576 GCATTTTAAAACCAAACCGAAAATAAC 57.839 29.630 1.97 0.00 0.00 1.89
594 596 6.096141 TCTCACTCTGTGCATTTTAAAACCAA 59.904 34.615 1.97 0.00 32.98 3.67
660 675 4.018960 AGCCAAGTATTCTCACATTCACCT 60.019 41.667 0.00 0.00 0.00 4.00
710 726 1.622811 TCGCCGGGTTTCCTAAACTTA 59.377 47.619 2.18 0.00 41.14 2.24
740 756 2.164827 TGCTCATAGGCAGCATGTTTTG 59.835 45.455 0.00 0.00 42.09 2.44
741 757 2.449464 TGCTCATAGGCAGCATGTTTT 58.551 42.857 0.00 0.00 42.09 2.43
798 814 1.609208 TGCTCTTGGAAACTTGGCTC 58.391 50.000 0.00 0.00 0.00 4.70
810 826 2.444421 AGCAAAGGAAGGATGCTCTTG 58.556 47.619 0.00 0.00 46.98 3.02
825 841 1.743321 CGGGTGGCAAGGAAAGCAAA 61.743 55.000 0.00 0.00 0.00 3.68
936 952 1.209261 TGCACGATTTATGAGGCTGGA 59.791 47.619 0.00 0.00 0.00 3.86
1025 1041 3.708220 GACGCGGCAAGAGGAGGAG 62.708 68.421 7.34 0.00 0.00 3.69
1119 1141 0.324460 TTCTCTTCCTCCTCGTCCCC 60.324 60.000 0.00 0.00 0.00 4.81
1137 1159 4.796231 CGCAGTCTACCGCCGCTT 62.796 66.667 0.00 0.00 0.00 4.68
1146 1168 4.129737 GCCTCCACGCGCAGTCTA 62.130 66.667 5.73 0.00 0.00 2.59
1187 1209 2.987962 GGAACCCGTCTTCCCCTC 59.012 66.667 0.00 0.00 34.59 4.30
1188 1210 3.001406 CGGAACCCGTCTTCCCCT 61.001 66.667 0.00 0.00 42.73 4.79
1191 1213 4.772687 GCCCGGAACCCGTCTTCC 62.773 72.222 0.73 0.00 46.80 3.46
1236 1258 2.989639 CTCCGGTTCTGGATGGCA 59.010 61.111 0.00 0.00 37.41 4.92
1315 1337 2.558554 ATCTCCGAAACGCTGACGGG 62.559 60.000 0.00 0.00 45.61 5.28
1379 1408 9.036671 ACGAACAAAAGAACAAAAGAAGAAAAA 57.963 25.926 0.00 0.00 0.00 1.94
1380 1409 8.582433 ACGAACAAAAGAACAAAAGAAGAAAA 57.418 26.923 0.00 0.00 0.00 2.29
1381 1410 8.582433 AACGAACAAAAGAACAAAAGAAGAAA 57.418 26.923 0.00 0.00 0.00 2.52
1382 1411 8.079809 AGAACGAACAAAAGAACAAAAGAAGAA 58.920 29.630 0.00 0.00 0.00 2.52
1383 1412 7.537306 CAGAACGAACAAAAGAACAAAAGAAGA 59.463 33.333 0.00 0.00 0.00 2.87
1384 1413 7.201350 CCAGAACGAACAAAAGAACAAAAGAAG 60.201 37.037 0.00 0.00 0.00 2.85
1385 1414 6.584563 CCAGAACGAACAAAAGAACAAAAGAA 59.415 34.615 0.00 0.00 0.00 2.52
1386 1415 6.090129 CCAGAACGAACAAAAGAACAAAAGA 58.910 36.000 0.00 0.00 0.00 2.52
1413 1444 2.110213 TCCCGTGTCAGCAACCAC 59.890 61.111 0.00 0.00 0.00 4.16
1414 1445 2.050836 ATGTCCCGTGTCAGCAACCA 62.051 55.000 0.00 0.00 0.00 3.67
1415 1446 1.302511 ATGTCCCGTGTCAGCAACC 60.303 57.895 0.00 0.00 0.00 3.77
1416 1447 1.868997 CATGTCCCGTGTCAGCAAC 59.131 57.895 0.00 0.00 0.00 4.17
1417 1448 1.965930 GCATGTCCCGTGTCAGCAA 60.966 57.895 0.00 0.00 0.00 3.91
1418 1449 2.358615 GCATGTCCCGTGTCAGCA 60.359 61.111 0.00 0.00 0.00 4.41
1555 1587 3.059306 CGTTGCAACTGACAAGTGTTTTG 59.941 43.478 26.09 2.68 36.51 2.44
1588 1622 5.524511 TTTCGGTATGAACTGATCAAACG 57.475 39.130 0.00 0.00 42.54 3.60
1619 1655 0.813821 GCCCTTCCATTCTGCAAGTC 59.186 55.000 0.00 0.00 33.76 3.01
1713 1749 3.876914 CAGAGTTTAGCTGGACAACAACA 59.123 43.478 0.00 0.00 0.00 3.33
1714 1750 4.127171 TCAGAGTTTAGCTGGACAACAAC 58.873 43.478 0.00 0.00 34.20 3.32
1719 1755 4.318332 CACATTCAGAGTTTAGCTGGACA 58.682 43.478 0.00 0.00 34.20 4.02
1720 1756 3.686726 CCACATTCAGAGTTTAGCTGGAC 59.313 47.826 0.00 0.00 34.20 4.02
1725 1761 1.745653 GGCCCACATTCAGAGTTTAGC 59.254 52.381 0.00 0.00 0.00 3.09
1730 1766 1.001641 GCTGGCCCACATTCAGAGT 60.002 57.895 0.00 0.00 0.00 3.24
1739 1776 3.365265 CACCGAAAGCTGGCCCAC 61.365 66.667 0.00 0.00 0.00 4.61
1752 1789 6.431198 AATGTGCCTATAAAGTAAACACCG 57.569 37.500 0.00 0.00 0.00 4.94
1762 1799 6.438741 TGTGGAATGGAAAATGTGCCTATAAA 59.561 34.615 0.00 0.00 0.00 1.40
1763 1800 5.954752 TGTGGAATGGAAAATGTGCCTATAA 59.045 36.000 0.00 0.00 0.00 0.98
1764 1801 5.514169 TGTGGAATGGAAAATGTGCCTATA 58.486 37.500 0.00 0.00 0.00 1.31
1765 1802 4.352009 TGTGGAATGGAAAATGTGCCTAT 58.648 39.130 0.00 0.00 0.00 2.57
1766 1803 3.772387 TGTGGAATGGAAAATGTGCCTA 58.228 40.909 0.00 0.00 0.00 3.93
1767 1804 2.607499 TGTGGAATGGAAAATGTGCCT 58.393 42.857 0.00 0.00 0.00 4.75
1768 1805 3.615224 ATGTGGAATGGAAAATGTGCC 57.385 42.857 0.00 0.00 0.00 5.01
1769 1806 5.723295 AGTTATGTGGAATGGAAAATGTGC 58.277 37.500 0.00 0.00 0.00 4.57
1774 1811 8.682710 GCACTATAAGTTATGTGGAATGGAAAA 58.317 33.333 18.71 0.00 0.00 2.29
1775 1812 7.831690 TGCACTATAAGTTATGTGGAATGGAAA 59.168 33.333 18.71 0.00 0.00 3.13
1776 1813 7.342581 TGCACTATAAGTTATGTGGAATGGAA 58.657 34.615 18.71 0.00 0.00 3.53
1777 1814 6.894682 TGCACTATAAGTTATGTGGAATGGA 58.105 36.000 18.71 4.78 0.00 3.41
1778 1815 7.566760 TTGCACTATAAGTTATGTGGAATGG 57.433 36.000 18.91 0.00 36.22 3.16
1786 1823 9.869844 GCTGTCTAAATTGCACTATAAGTTATG 57.130 33.333 5.61 0.00 0.00 1.90
1787 1824 9.613428 TGCTGTCTAAATTGCACTATAAGTTAT 57.387 29.630 0.17 0.17 0.00 1.89
1788 1825 9.098355 CTGCTGTCTAAATTGCACTATAAGTTA 57.902 33.333 0.00 0.00 0.00 2.24
1789 1826 7.824289 TCTGCTGTCTAAATTGCACTATAAGTT 59.176 33.333 0.00 0.00 0.00 2.66
1790 1827 7.331026 TCTGCTGTCTAAATTGCACTATAAGT 58.669 34.615 0.00 0.00 0.00 2.24
1793 1830 6.980978 GTCTCTGCTGTCTAAATTGCACTATA 59.019 38.462 0.00 0.00 0.00 1.31
1799 1841 3.748048 TGTGTCTCTGCTGTCTAAATTGC 59.252 43.478 0.00 0.00 0.00 3.56
1809 1851 5.008415 AGTCAGAAATTTTGTGTCTCTGCTG 59.992 40.000 6.22 0.00 34.73 4.41
1823 1867 5.041191 ACAGACCAACAGAGTCAGAAATT 57.959 39.130 0.00 0.00 36.68 1.82
1824 1868 4.696479 ACAGACCAACAGAGTCAGAAAT 57.304 40.909 0.00 0.00 36.68 2.17
1827 1871 2.558795 GCTACAGACCAACAGAGTCAGA 59.441 50.000 0.00 0.00 36.68 3.27
1828 1872 2.353208 GGCTACAGACCAACAGAGTCAG 60.353 54.545 0.00 0.00 36.68 3.51
1829 1873 1.618837 GGCTACAGACCAACAGAGTCA 59.381 52.381 0.00 0.00 36.68 3.41
1830 1874 1.618837 TGGCTACAGACCAACAGAGTC 59.381 52.381 0.00 0.00 33.12 3.36
1831 1875 1.717032 TGGCTACAGACCAACAGAGT 58.283 50.000 0.00 0.00 33.12 3.24
1833 1877 2.047061 ACTTGGCTACAGACCAACAGA 58.953 47.619 0.00 0.00 42.23 3.41
1834 1878 2.146342 CACTTGGCTACAGACCAACAG 58.854 52.381 0.00 0.00 42.23 3.16
1835 1879 1.765904 TCACTTGGCTACAGACCAACA 59.234 47.619 0.00 0.00 42.23 3.33
1836 1880 2.543777 TCACTTGGCTACAGACCAAC 57.456 50.000 0.00 0.00 42.23 3.77
1838 1882 1.765904 TGTTCACTTGGCTACAGACCA 59.234 47.619 0.00 0.00 34.65 4.02
1839 1883 2.543777 TGTTCACTTGGCTACAGACC 57.456 50.000 0.00 0.00 0.00 3.85
1840 1884 2.808543 CCTTGTTCACTTGGCTACAGAC 59.191 50.000 0.00 0.00 0.00 3.51
1907 1966 2.361119 CGCTAGGAGTGTACCATGCTTA 59.639 50.000 0.00 0.00 0.00 3.09
1915 1974 3.308438 TTTGGTTCGCTAGGAGTGTAC 57.692 47.619 0.00 0.00 0.00 2.90
1923 1982 3.002791 TCTCTGCATTTTGGTTCGCTAG 58.997 45.455 0.00 0.00 0.00 3.42
1927 1986 1.200020 GGGTCTCTGCATTTTGGTTCG 59.800 52.381 0.00 0.00 0.00 3.95
1932 1991 5.452078 TTTACTTGGGTCTCTGCATTTTG 57.548 39.130 0.00 0.00 0.00 2.44
1941 2003 4.626172 GTCGAGTCATTTTACTTGGGTCTC 59.374 45.833 0.00 0.00 32.53 3.36
1945 2007 5.941948 AAAGTCGAGTCATTTTACTTGGG 57.058 39.130 0.00 0.00 32.53 4.12
1976 2038 3.028969 GCATCCAGATTCTGCGGC 58.971 61.111 8.23 7.31 0.00 6.53
1997 2059 3.443037 CTTGTTTGCCACGATCAAAACA 58.557 40.909 0.00 0.00 35.49 2.83
2179 2241 7.718334 TTCACAAGAGATTCTGGTATCTGTA 57.282 36.000 0.00 0.00 35.06 2.74
2207 2269 7.309621 GGGATAAAGTCATTATGCATGCTGATT 60.310 37.037 20.33 8.03 42.39 2.57
2208 2270 6.152323 GGGATAAAGTCATTATGCATGCTGAT 59.848 38.462 20.33 7.54 42.39 2.90
2215 2277 7.062322 ACATGAAGGGATAAAGTCATTATGCA 58.938 34.615 0.00 0.00 42.39 3.96
2230 2292 8.321353 CCTGCTATGTATTATTACATGAAGGGA 58.679 37.037 16.85 7.64 46.22 4.20
2245 2307 4.473559 ACCAACAACTACCCTGCTATGTAT 59.526 41.667 0.00 0.00 0.00 2.29
2246 2308 3.841845 ACCAACAACTACCCTGCTATGTA 59.158 43.478 0.00 0.00 0.00 2.29
2247 2309 2.642807 ACCAACAACTACCCTGCTATGT 59.357 45.455 0.00 0.00 0.00 2.29
2248 2310 3.270877 GACCAACAACTACCCTGCTATG 58.729 50.000 0.00 0.00 0.00 2.23
2329 2395 5.659463 TCAAAATGATAAATTTGCTCCCGG 58.341 37.500 0.00 0.00 36.66 5.73
2475 2542 6.529220 ACAGTAAGAGAAAGTGAAAGCTGAT 58.471 36.000 0.00 0.00 0.00 2.90
2476 2543 5.918608 ACAGTAAGAGAAAGTGAAAGCTGA 58.081 37.500 0.00 0.00 0.00 4.26
2477 2544 6.425504 CAACAGTAAGAGAAAGTGAAAGCTG 58.574 40.000 0.00 0.00 0.00 4.24
2478 2545 5.008118 GCAACAGTAAGAGAAAGTGAAAGCT 59.992 40.000 0.00 0.00 0.00 3.74
2479 2546 5.008118 AGCAACAGTAAGAGAAAGTGAAAGC 59.992 40.000 0.00 0.00 0.00 3.51
2480 2547 6.610741 AGCAACAGTAAGAGAAAGTGAAAG 57.389 37.500 0.00 0.00 0.00 2.62
2510 2577 0.324368 ACATCTGGTAGGCTGTCCGA 60.324 55.000 0.00 2.84 37.47 4.55
2573 2640 4.860907 CACAGTAGCAATGAAAAGGAATGC 59.139 41.667 0.00 0.00 37.28 3.56
2723 2790 2.309613 ACTTTGGCTGCAGATGAAACA 58.690 42.857 20.43 2.70 0.00 2.83
2850 2917 9.823647 AGAAGTATAGAAATGTGTGAAATCGAT 57.176 29.630 0.00 0.00 0.00 3.59
2921 2990 8.266473 AGAATATCCTCATGCTTATCCATCTTC 58.734 37.037 0.00 0.00 0.00 2.87
3048 3117 7.334858 ACTCTAAGCTTAAAGATCTCTTTGGG 58.665 38.462 13.79 0.00 45.01 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.