AutoCloner

Multiple sequence alignment - TraesCS7B01G147700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G147700	chr7B	100.000	2471	0	0	1	2471	193961365	193963835	0.000000e+00	4564.0
1	TraesCS7B01G147700	chr7B	94.937	79	4	0	43	121	710426302	710426224	9.280000e-25	124.0
2	TraesCS7B01G147700	chr2B	90.787	1118	67	18	1031	2141	359497830	359498918	0.000000e+00	1461.0
3	TraesCS7B01G147700	chr2B	95.410	610	23	3	1866	2471	218942080	218941472	0.000000e+00	966.0
4	TraesCS7B01G147700	chr2B	93.760	609	34	3	1864	2471	359498785	359499390	0.000000e+00	911.0
5	TraesCS7B01G147700	chr2B	92.586	607	41	3	1866	2471	333260608	333261211	0.000000e+00	869.0
6	TraesCS7B01G147700	chr2B	90.842	546	41	6	86	629	483662532	483661994	0.000000e+00	723.0
7	TraesCS7B01G147700	chr2B	93.443	366	18	4	675	1035	359497422	359497786	2.800000e-149	538.0
8	TraesCS7B01G147700	chr2B	94.937	79	4	0	43	121	182262903	182262981	9.280000e-25	124.0
9	TraesCS7B01G147700	chr1B	99.220	641	3	2	1	640	222911422	222910783	0.000000e+00	1155.0
10	TraesCS7B01G147700	chr1B	91.344	543	38	6	86	626	635928431	635928966	0.000000e+00	734.0
11	TraesCS7B01G147700	chr1B	92.771	83	5	1	40	121	29413961	29413879	4.320000e-23	119.0
12	TraesCS7B01G147700	chr1A	98.764	647	8	0	1	647	4370846	4370200	0.000000e+00	1151.0
13	TraesCS7B01G147700	chr3A	99.062	640	5	1	1	639	547573490	547572851	0.000000e+00	1147.0
14	TraesCS7B01G147700	chr3A	98.925	93	0	1	636	727	667305947	667305855	5.470000e-37	165.0
15	TraesCS7B01G147700	chr3A	98.913	92	1	0	636	727	738082731	738082822	5.470000e-37	165.0
16	TraesCS7B01G147700	chr3D	95.731	609	24	2	1864	2471	135178630	135178023	0.000000e+00	979.0
17	TraesCS7B01G147700	chr4A	93.953	645	32	4	1	638	7117853	7117209	0.000000e+00	968.0
18	TraesCS7B01G147700	chrUn	93.760	641	32	7	1835	2471	340056062	340056698	0.000000e+00	955.0
19	TraesCS7B01G147700	chr4B	93.760	641	32	7	1835	2471	481850694	481850058	0.000000e+00	955.0
20	TraesCS7B01G147700	chr4B	93.760	641	32	7	1835	2471	481864780	481864144	0.000000e+00	955.0
21	TraesCS7B01G147700	chr4B	90.842	546	40	7	86	629	74667296	74666759	0.000000e+00	723.0
22	TraesCS7B01G147700	chr4D	92.916	607	39	4	1867	2471	222419333	222418729	0.000000e+00	880.0
23	TraesCS7B01G147700	chr4D	92.308	52	3	1	703	754	18586199	18586249	3.410000e-09	73.1
24	TraesCS7B01G147700	chr2A	91.667	636	35	8	1	632	734592913	734592292	0.000000e+00	865.0
25	TraesCS7B01G147700	chr2A	97.143	105	0	3	636	739	115428629	115428527	9.080000e-40	174.0
26	TraesCS7B01G147700	chr2A	100.000	92	0	0	636	727	727635803	727635712	1.180000e-38	171.0
27	TraesCS7B01G147700	chr1D	89.736	643	55	11	1834	2471	303222910	303222274	0.000000e+00	811.0
28	TraesCS7B01G147700	chr3B	90.614	554	43	6	86	637	767686553	767686007	0.000000e+00	726.0
29	TraesCS7B01G147700	chr3B	97.143	105	0	3	636	739	775840020	775839918	9.080000e-40	174.0
30	TraesCS7B01G147700	chr5A	95.575	113	2	3	636	746	593098575	593098464	7.020000e-41	178.0
31	TraesCS7B01G147700	chr5A	90.385	52	4	1	703	754	604249277	604249327	1.590000e-07	67.6
32	TraesCS7B01G147700	chr6A	97.143	105	0	3	636	739	583031548	583031650	9.080000e-40	174.0
33	TraesCS7B01G147700	chr6B	95.327	107	0	4	636	739	262412640	262412536	5.470000e-37	165.0
34	TraesCS7B01G147700	chr5B	93.671	79	5	0	43	121	19115376	19115454	4.320000e-23	119.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G147700	chr7B	193961365	193963835	2470	False	4564	4564	100.000000	1	2471	1	chr7B.!!$F1	2470
1	TraesCS7B01G147700	chr2B	359497422	359499390	1968	False	970	1461	92.663333	675	2471	3	chr2B.!!$F3	1796
2	TraesCS7B01G147700	chr2B	218941472	218942080	608	True	966	966	95.410000	1866	2471	1	chr2B.!!$R1	605
3	TraesCS7B01G147700	chr2B	333260608	333261211	603	False	869	869	92.586000	1866	2471	1	chr2B.!!$F2	605
4	TraesCS7B01G147700	chr2B	483661994	483662532	538	True	723	723	90.842000	86	629	1	chr2B.!!$R2	543
5	TraesCS7B01G147700	chr1B	222910783	222911422	639	True	1155	1155	99.220000	1	640	1	chr1B.!!$R2	639
6	TraesCS7B01G147700	chr1B	635928431	635928966	535	False	734	734	91.344000	86	626	1	chr1B.!!$F1	540
7	TraesCS7B01G147700	chr1A	4370200	4370846	646	True	1151	1151	98.764000	1	647	1	chr1A.!!$R1	646
8	TraesCS7B01G147700	chr3A	547572851	547573490	639	True	1147	1147	99.062000	1	639	1	chr3A.!!$R1	638
9	TraesCS7B01G147700	chr3D	135178023	135178630	607	True	979	979	95.731000	1864	2471	1	chr3D.!!$R1	607
10	TraesCS7B01G147700	chr4A	7117209	7117853	644	True	968	968	93.953000	1	638	1	chr4A.!!$R1	637
11	TraesCS7B01G147700	chrUn	340056062	340056698	636	False	955	955	93.760000	1835	2471	1	chrUn.!!$F1	636
12	TraesCS7B01G147700	chr4B	481850058	481850694	636	True	955	955	93.760000	1835	2471	1	chr4B.!!$R2	636
13	TraesCS7B01G147700	chr4B	481864144	481864780	636	True	955	955	93.760000	1835	2471	1	chr4B.!!$R3	636
14	TraesCS7B01G147700	chr4B	74666759	74667296	537	True	723	723	90.842000	86	629	1	chr4B.!!$R1	543
15	TraesCS7B01G147700	chr4D	222418729	222419333	604	True	880	880	92.916000	1867	2471	1	chr4D.!!$R1	604
16	TraesCS7B01G147700	chr2A	734592292	734592913	621	True	865	865	91.667000	1	632	1	chr2A.!!$R3	631
17	TraesCS7B01G147700	chr1D	303222274	303222910	636	True	811	811	89.736000	1834	2471	1	chr1D.!!$R1	637
18	TraesCS7B01G147700	chr3B	767686007	767686553	546	True	726	726	90.614000	86	637	1	chr3B.!!$R1	551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
990	1005	0.108804	ATACTCACGGGACAACAGCG	60.109	55.0	0.0	0.0	0.0	5.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2078	2273	4.002982	GTGACATGATGTAGACCTTGCAA	58.997	43.478	0.0	0.0	0.0	4.08	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	2.093553	TGATGATGATGCGACCTGACAA	60.094	45.455	0.00	0.00	0.00	3.18
641	654	1.607467	GCCCAGTGTTGGCCAATCT	60.607	57.895	23.66	19.56	43.58	2.40
643	656	0.890683	CCCAGTGTTGGCCAATCTTC	59.109	55.000	23.66	9.33	43.58	2.87
647	660	3.367703	CCAGTGTTGGCCAATCTTCAATC	60.368	47.826	23.66	6.47	37.73	2.67
648	661	3.256383	CAGTGTTGGCCAATCTTCAATCA	59.744	43.478	23.66	9.37	0.00	2.57
649	662	3.896888	AGTGTTGGCCAATCTTCAATCAA	59.103	39.130	23.66	0.00	0.00	2.57
650	663	4.529377	AGTGTTGGCCAATCTTCAATCAAT	59.471	37.500	23.66	8.56	0.00	2.57
651	664	5.716228	AGTGTTGGCCAATCTTCAATCAATA	59.284	36.000	23.66	0.00	0.00	1.90
652	665	6.038356	GTGTTGGCCAATCTTCAATCAATAG	58.962	40.000	23.66	0.00	0.00	1.73
653	666	5.951148	TGTTGGCCAATCTTCAATCAATAGA	59.049	36.000	23.66	0.00	0.00	1.98
654	667	6.436847	TGTTGGCCAATCTTCAATCAATAGAA	59.563	34.615	23.66	0.00	0.00	2.10
655	668	7.124599	TGTTGGCCAATCTTCAATCAATAGAAT	59.875	33.333	23.66	0.00	0.00	2.40
656	669	8.632679	GTTGGCCAATCTTCAATCAATAGAATA	58.367	33.333	23.66	0.00	0.00	1.75
657	670	8.765488	TGGCCAATCTTCAATCAATAGAATAA	57.235	30.769	0.61	0.00	0.00	1.40
658	671	8.632679	TGGCCAATCTTCAATCAATAGAATAAC	58.367	33.333	0.61	0.00	0.00	1.89
659	672	8.854117	GGCCAATCTTCAATCAATAGAATAACT	58.146	33.333	0.00	0.00	0.00	2.24
660	673	9.674824	GCCAATCTTCAATCAATAGAATAACTG	57.325	33.333	0.00	0.00	0.00	3.16
688	701	8.506437	TCATTCATATATCTGTTTTCCATTCGC	58.494	33.333	0.00	0.00	0.00	4.70
692	705	2.859165	TCTGTTTTCCATTCGCTCCT	57.141	45.000	0.00	0.00	0.00	3.69
694	707	2.303022	TCTGTTTTCCATTCGCTCCTCT	59.697	45.455	0.00	0.00	0.00	3.69
700	713	0.310543	CCATTCGCTCCTCTCTCTCG	59.689	60.000	0.00	0.00	0.00	4.04
701	714	1.304254	CATTCGCTCCTCTCTCTCGA	58.696	55.000	0.00	0.00	0.00	4.04
705	718	1.140052	TCGCTCCTCTCTCTCGATTCT	59.860	52.381	0.00	0.00	0.00	2.40
706	719	1.531149	CGCTCCTCTCTCTCGATTCTC	59.469	57.143	0.00	0.00	0.00	2.87
707	720	2.806745	CGCTCCTCTCTCTCGATTCTCT	60.807	54.545	0.00	0.00	0.00	3.10
708	721	2.808543	GCTCCTCTCTCTCGATTCTCTC	59.191	54.545	0.00	0.00	0.00	3.20
710	723	4.262463	GCTCCTCTCTCTCGATTCTCTCTA	60.262	50.000	0.00	0.00	0.00	2.43
722	735	6.484540	TCGATTCTCTCTAACACGTTATCAC	58.515	40.000	0.00	0.00	0.00	3.06
740	753	2.558313	GCACTTTGCTCTGCCGAC	59.442	61.111	0.00	0.00	40.96	4.79
835	848	6.128117	GGAATTACCGCAACTCACTTCAATAA	60.128	38.462	0.00	0.00	0.00	1.40
853	866	1.498865	AATTCGTCATCGGCGATGCC	61.499	55.000	37.71	29.48	46.75	4.40
894	907	2.285313	GCGAATCGTTTCTAGCAAGAGC	60.285	50.000	4.07	0.00	42.56	4.09
898	911	3.660501	TCGTTTCTAGCAAGAGCAGAA	57.339	42.857	0.00	0.00	45.49	3.02
990	1005	0.108804	ATACTCACGGGACAACAGCG	60.109	55.000	0.00	0.00	0.00	5.18
1006	1021	4.431131	CGCCCTCAACCATGGCCT	62.431	66.667	13.04	0.00	42.29	5.19
1278	1343	0.462759	GGGAAGTTCGCTCCATCCTG	60.463	60.000	12.42	0.00	0.00	3.86
1286	1351	1.301558	GCTCCATCCTGCCATCGAG	60.302	63.158	0.00	0.00	0.00	4.04
1351	1416	2.669569	CACCGTGCTGTTCCCCAG	60.670	66.667	0.00	0.00	44.53	4.45
1358	1423	2.967397	CTGTTCCCCAGCGACGTA	59.033	61.111	0.00	0.00	33.59	3.57
1359	1424	1.515954	CTGTTCCCCAGCGACGTAT	59.484	57.895	0.00	0.00	33.59	3.06
1360	1425	0.742505	CTGTTCCCCAGCGACGTATA	59.257	55.000	0.00	0.00	33.59	1.47
1361	1426	0.457035	TGTTCCCCAGCGACGTATAC	59.543	55.000	0.00	0.00	0.00	1.47
1362	1427	0.593263	GTTCCCCAGCGACGTATACG	60.593	60.000	23.24	23.24	46.33	3.06
1428	1493	5.432885	TCCCTTCGTTGATTTTCAGTTTC	57.567	39.130	0.00	0.00	0.00	2.78
1653	1718	9.445878	CCCTTGGCTATTATCTATATATGCATG	57.554	37.037	10.16	0.00	0.00	4.06
1670	1735	2.398498	CATGTGAGATCGTCGGATTCC	58.602	52.381	0.00	0.00	31.51	3.01
1681	1746	5.593679	TCGTCGGATTCCTCTATTTCTTT	57.406	39.130	0.30	0.00	0.00	2.52
1704	1769	9.525409	CTTTTTCATCATGAGAATGGTTATTCC	57.475	33.333	0.09	0.00	42.99	3.01
1792	1857	8.583765	GTTTCTTAGTGCAACAACTTTAGTTTG	58.416	33.333	0.00	0.00	41.43	2.93
2225	2424	3.999051	GCGAGATCTACACCGCAC	58.001	61.111	18.48	0.00	46.04	5.34
2226	2425	1.138883	GCGAGATCTACACCGCACA	59.861	57.895	18.48	0.00	46.04	4.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
634	647	9.674824	CAGTTATTCTATTGATTGAAGATTGGC	57.325	33.333	0.00	0.00	0.00	4.52
657	670	9.685276	TGGAAAACAGATATATGAATGAACAGT	57.315	29.630	3.93	0.00	0.00	3.55
662	675	8.506437	GCGAATGGAAAACAGATATATGAATGA	58.494	33.333	3.93	0.00	0.00	2.57
663	676	8.509690	AGCGAATGGAAAACAGATATATGAATG	58.490	33.333	3.93	0.00	0.00	2.67
664	677	8.627208	AGCGAATGGAAAACAGATATATGAAT	57.373	30.769	3.93	0.00	0.00	2.57
665	678	7.173218	GGAGCGAATGGAAAACAGATATATGAA	59.827	37.037	3.93	0.00	0.00	2.57
666	679	6.650807	GGAGCGAATGGAAAACAGATATATGA	59.349	38.462	3.93	0.00	0.00	2.15
667	680	6.652481	AGGAGCGAATGGAAAACAGATATATG	59.348	38.462	0.00	0.00	0.00	1.78
668	681	6.773638	AGGAGCGAATGGAAAACAGATATAT	58.226	36.000	0.00	0.00	0.00	0.86
669	682	6.042093	AGAGGAGCGAATGGAAAACAGATATA	59.958	38.462	0.00	0.00	0.00	0.86
670	683	5.041191	AGGAGCGAATGGAAAACAGATAT	57.959	39.130	0.00	0.00	0.00	1.63
671	684	4.162320	AGAGGAGCGAATGGAAAACAGATA	59.838	41.667	0.00	0.00	0.00	1.98
672	685	3.054802	AGAGGAGCGAATGGAAAACAGAT	60.055	43.478	0.00	0.00	0.00	2.90
673	686	2.303022	AGAGGAGCGAATGGAAAACAGA	59.697	45.455	0.00	0.00	0.00	3.41
674	687	2.675348	GAGAGGAGCGAATGGAAAACAG	59.325	50.000	0.00	0.00	0.00	3.16
675	688	2.303022	AGAGAGGAGCGAATGGAAAACA	59.697	45.455	0.00	0.00	0.00	2.83
676	689	2.933260	GAGAGAGGAGCGAATGGAAAAC	59.067	50.000	0.00	0.00	0.00	2.43
677	690	2.834549	AGAGAGAGGAGCGAATGGAAAA	59.165	45.455	0.00	0.00	0.00	2.29
678	691	2.428890	GAGAGAGAGGAGCGAATGGAAA	59.571	50.000	0.00	0.00	0.00	3.13
700	713	5.171695	GCGTGATAACGTGTTAGAGAGAATC	59.828	44.000	4.14	0.00	35.26	2.52
701	714	5.035443	GCGTGATAACGTGTTAGAGAGAAT	58.965	41.667	4.14	0.00	35.26	2.40
705	718	3.189910	AGTGCGTGATAACGTGTTAGAGA	59.810	43.478	4.14	0.00	35.26	3.10
706	719	3.499048	AGTGCGTGATAACGTGTTAGAG	58.501	45.455	4.14	0.00	35.26	2.43
707	720	3.564235	AGTGCGTGATAACGTGTTAGA	57.436	42.857	4.14	0.00	35.26	2.10
708	721	4.382831	CAAAGTGCGTGATAACGTGTTAG	58.617	43.478	4.14	0.00	35.26	2.34
710	723	2.601266	GCAAAGTGCGTGATAACGTGTT	60.601	45.455	4.14	0.00	31.71	3.32
723	736	2.180131	CTGTCGGCAGAGCAAAGTGC	62.180	60.000	12.86	0.00	45.28	4.40
740	753	2.435586	CTTGTGGCCTCCTCGCTG	60.436	66.667	3.32	0.00	0.00	5.18
798	811	2.629051	GGTAATTCCTTCCAGTCCGTG	58.371	52.381	0.00	0.00	0.00	4.94
835	848	1.956170	GGCATCGCCGATGACGAAT	60.956	57.895	29.82	0.00	42.09	3.34
853	866	2.755103	GCTGGATGGTCTTTGTTTAGGG	59.245	50.000	0.00	0.00	0.00	3.53
894	907	7.490840	TCTATTGCTGATCTTCTCTTCTTCTG	58.509	38.462	0.00	0.00	0.00	3.02
898	911	7.769970	CCTTTTCTATTGCTGATCTTCTCTTCT	59.230	37.037	0.00	0.00	0.00	2.85
1006	1021	1.202114	GCCATGTGAAATCAAGCCGAA	59.798	47.619	0.00	0.00	0.00	4.30
1172	1235	1.811266	CCTGATGAGTCAACCGCCG	60.811	63.158	0.00	0.00	33.05	6.46
1180	1243	1.596477	GGCCGCATCCTGATGAGTC	60.596	63.158	11.23	0.00	41.20	3.36
1182	1245	2.664185	CGGCCGCATCCTGATGAG	60.664	66.667	14.67	7.55	41.20	2.90
1260	1325	1.092345	GCAGGATGGAGCGAACTTCC	61.092	60.000	0.00	0.00	35.86	3.46
1262	1327	1.078143	GGCAGGATGGAGCGAACTT	60.078	57.895	0.00	0.00	35.86	2.66
1272	1337	1.300465	CCGTCTCGATGGCAGGATG	60.300	63.158	0.00	0.00	40.87	3.51
1273	1338	3.133014	CCGTCTCGATGGCAGGAT	58.867	61.111	0.00	0.00	0.00	3.24
1351	1416	2.924903	TGGATGATTCGTATACGTCGC	58.075	47.619	23.67	14.25	40.80	5.19
1353	1418	4.174009	CCCATGGATGATTCGTATACGTC	58.826	47.826	23.67	15.65	40.80	4.34
1354	1419	3.056107	CCCCATGGATGATTCGTATACGT	60.056	47.826	23.67	6.63	40.80	3.57
1355	1420	3.194755	TCCCCATGGATGATTCGTATACG	59.805	47.826	19.23	19.23	35.03	3.06
1356	1421	4.819105	TCCCCATGGATGATTCGTATAC	57.181	45.455	15.22	0.00	35.03	1.47
1357	1422	4.019681	GGTTCCCCATGGATGATTCGTATA	60.020	45.833	15.22	0.00	41.40	1.47
1358	1423	3.244911	GGTTCCCCATGGATGATTCGTAT	60.245	47.826	15.22	0.00	41.40	3.06
1359	1424	2.105821	GGTTCCCCATGGATGATTCGTA	59.894	50.000	15.22	0.00	41.40	3.43
1360	1425	1.133792	GGTTCCCCATGGATGATTCGT	60.134	52.381	15.22	0.00	41.40	3.85
1361	1426	1.143684	AGGTTCCCCATGGATGATTCG	59.856	52.381	15.22	0.00	41.40	3.34
1362	1427	2.175499	TGAGGTTCCCCATGGATGATTC	59.825	50.000	15.22	8.26	41.40	2.52
1415	1480	7.707624	ATAGATTGGCTGAAACTGAAAATCA	57.292	32.000	0.00	0.00	0.00	2.57
1428	1493	6.709397	TGAGAATAAGAGCAATAGATTGGCTG	59.291	38.462	4.49	0.00	38.21	4.85
1607	1672	7.122650	CCAAGGGCTTAATCTGTAATTTCTCAA	59.877	37.037	0.00	0.00	0.00	3.02
1611	1676	5.592054	GCCAAGGGCTTAATCTGTAATTTC	58.408	41.667	0.00	0.00	46.69	2.17
1647	1712	0.746659	TCCGACGATCTCACATGCAT	59.253	50.000	0.00	0.00	0.00	3.96
1653	1718	1.950909	AGAGGAATCCGACGATCTCAC	59.049	52.381	0.00	0.00	0.00	3.51
1697	1762	7.750903	GCTTACTGAAAACATGTCTGGAATAAC	59.249	37.037	0.00	0.00	0.00	1.89
1704	1769	6.005583	ACATGCTTACTGAAAACATGTCTG	57.994	37.500	0.00	0.00	46.14	3.51
1741	1806	9.466497	ACATGTCATAGGATGTTAGAAAAACAT	57.534	29.630	3.15	3.15	42.98	2.71
1749	1814	9.823647	ACTAAGAAACATGTCATAGGATGTTAG	57.176	33.333	0.00	1.96	41.00	2.34
1792	1857	7.542025	AGTTTCACAAGATAATCTCAATTGCC	58.458	34.615	0.00	0.00	0.00	4.52
1853	1918	9.520204	CACAAATAATATTTGGATGGTCTCAAC	57.480	33.333	24.36	0.00	33.92	3.18
1912	2107	7.978982	ACAGTAGTGATGAATAATCTGCAAAC	58.021	34.615	4.09	0.00	36.15	2.93
2016	2211	7.916450	GCCACTATTACCTTATGATATCTCGAC	59.084	40.741	3.98	0.00	0.00	4.20
2078	2273	4.002982	GTGACATGATGTAGACCTTGCAA	58.997	43.478	0.00	0.00	0.00	4.08
2225	2424	4.307432	ACACTTTGAAGATAGTCACCGTG	58.693	43.478	0.00	0.00	35.56	4.94
2226	2425	4.602340	ACACTTTGAAGATAGTCACCGT	57.398	40.909	0.00	0.00	0.00	4.83
2262	2463	6.404844	CCTTATAGCCATATGTGTAGACCTCG	60.405	46.154	1.24	0.00	0.00	4.63
2295	2496	7.027161	GCTTCGGATGAGCAAGTTTTAATTTA	58.973	34.615	0.00	0.00	0.00	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.