Multiple sequence alignment - TraesCS7B01G146600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G146600 chr7B 100.000 2706 0 0 1 2706 191726608 191729313 0.000000e+00 4998
1 TraesCS7B01G146600 chr7B 92.055 579 35 4 1006 1574 698631880 698631303 0.000000e+00 804
2 TraesCS7B01G146600 chr7B 100.000 272 0 0 3128 3399 191729735 191730006 1.410000e-138 503
3 TraesCS7B01G146600 chr7B 92.708 96 7 0 116 211 588256292 588256197 4.570000e-29 139
4 TraesCS7B01G146600 chr7B 91.667 96 8 0 116 211 588243738 588243643 2.130000e-27 134
5 TraesCS7B01G146600 chr7A 89.964 2740 188 54 2 2706 222506421 222503734 0.000000e+00 3456
6 TraesCS7B01G146600 chr7A 76.259 278 43 18 3128 3396 41474797 41474534 3.560000e-25 126
7 TraesCS7B01G146600 chr7D 91.472 2486 135 35 270 2706 209826027 209823570 0.000000e+00 3345
8 TraesCS7B01G146600 chr7D 81.533 287 37 11 3128 3399 180858603 180858888 4.410000e-54 222
9 TraesCS7B01G146600 chr7D 92.157 102 7 1 116 216 244451558 244451457 3.540000e-30 143
10 TraesCS7B01G146600 chr6B 92.401 579 32 5 1006 1574 68219376 68219952 0.000000e+00 815
11 TraesCS7B01G146600 chr6B 93.293 164 11 0 3236 3399 419778703 419778540 3.390000e-60 243
12 TraesCS7B01G146600 chr4A 91.364 579 39 4 1006 1574 661809014 661808437 0.000000e+00 782
13 TraesCS7B01G146600 chr5A 91.192 579 40 4 1006 1574 564682000 564681423 0.000000e+00 776
14 TraesCS7B01G146600 chr5A 77.419 279 39 18 3128 3396 378276644 378276908 9.830000e-31 145
15 TraesCS7B01G146600 chr2B 90.975 277 20 4 3128 3399 519671651 519671375 5.360000e-98 368
16 TraesCS7B01G146600 chr2B 96.571 175 6 0 1006 1180 321106296 321106470 1.190000e-74 291
17 TraesCS7B01G146600 chr2B 83.113 302 18 12 3130 3399 717494425 717494725 9.420000e-61 244
18 TraesCS7B01G146600 chr2B 94.702 151 8 0 1272 1422 321106553 321106703 5.670000e-58 235
19 TraesCS7B01G146600 chr3A 94.495 218 12 0 1006 1223 346428086 346427869 1.510000e-88 337
20 TraesCS7B01G146600 chr3A 94.318 176 10 0 1006 1181 373432391 373432566 1.550000e-68 270
21 TraesCS7B01G146600 chr1D 85.467 289 25 9 3128 3399 391334902 391335190 5.550000e-73 285
22 TraesCS7B01G146600 chr1D 92.553 94 7 0 118 211 231021203 231021110 5.920000e-28 135
23 TraesCS7B01G146600 chr3B 84.175 297 22 11 3128 3399 84902465 84902761 7.230000e-67 265
24 TraesCS7B01G146600 chr3B 89.796 98 9 1 121 218 85338125 85338029 1.280000e-24 124
25 TraesCS7B01G146600 chr5D 92.442 172 12 1 3229 3399 63554279 63554108 9.420000e-61 244
26 TraesCS7B01G146600 chr5D 90.435 115 9 2 98 211 480858414 480858527 2.110000e-32 150
27 TraesCS7B01G146600 chr2A 84.898 245 34 3 3155 3399 767388968 767388727 9.420000e-61 244
28 TraesCS7B01G146600 chr2A 82.759 203 28 6 3165 3361 41609540 41609339 1.250000e-39 174
29 TraesCS7B01G146600 chr2A 92.000 100 7 1 118 216 267885449 267885350 4.570000e-29 139
30 TraesCS7B01G146600 chr3D 84.470 264 22 8 3155 3399 474652239 474652502 3.390000e-60 243
31 TraesCS7B01G146600 chr3D 83.094 278 34 12 3128 3393 575772881 575772605 1.220000e-59 241
32 TraesCS7B01G146600 chr5B 81.046 306 24 11 3128 3399 216839966 216839661 2.660000e-51 213
33 TraesCS7B01G146600 chr1B 93.431 137 9 0 1270 1406 606228522 606228658 1.600000e-48 204
34 TraesCS7B01G146600 chr1B 90.099 101 9 1 112 211 668967776 668967876 2.750000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G146600 chr7B 191726608 191730006 3398 False 2750.5 4998 100.000 1 3399 2 chr7B.!!$F1 3398
1 TraesCS7B01G146600 chr7B 698631303 698631880 577 True 804.0 804 92.055 1006 1574 1 chr7B.!!$R3 568
2 TraesCS7B01G146600 chr7A 222503734 222506421 2687 True 3456.0 3456 89.964 2 2706 1 chr7A.!!$R2 2704
3 TraesCS7B01G146600 chr7D 209823570 209826027 2457 True 3345.0 3345 91.472 270 2706 1 chr7D.!!$R1 2436
4 TraesCS7B01G146600 chr6B 68219376 68219952 576 False 815.0 815 92.401 1006 1574 1 chr6B.!!$F1 568
5 TraesCS7B01G146600 chr4A 661808437 661809014 577 True 782.0 782 91.364 1006 1574 1 chr4A.!!$R1 568
6 TraesCS7B01G146600 chr5A 564681423 564682000 577 True 776.0 776 91.192 1006 1574 1 chr5A.!!$R1 568


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 788 0.096454 GCATAACGGACCTTTCGCAC 59.904 55.0 0.0 0.0 0.0 5.34 F
911 938 0.114364 AAAGCCATTCCCCGTCCTTT 59.886 50.0 0.0 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1638 1.102978 ATTTAACTGTCCATGGGCGC 58.897 50.0 12.67 0.0 0.0 6.53 R
2584 2640 1.761449 TTCCAACTGCAAGCTCAACA 58.239 45.0 0.00 0.0 37.6 3.33 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 4.518249 CTCTTACCCCCTCTTTTCACATC 58.482 47.826 0.00 0.00 0.00 3.06
161 162 0.328258 ACCCCCTCTTTTCACATCGG 59.672 55.000 0.00 0.00 0.00 4.18
164 165 1.407437 CCCCTCTTTTCACATCGGAGG 60.407 57.143 0.00 0.00 42.10 4.30
187 188 6.155393 AGGTCAGAAGGTAAGAGTTAATCTGG 59.845 42.308 0.00 0.00 38.67 3.86
197 198 5.763876 AGAGTTAATCTGGCCACTACTTT 57.236 39.130 0.00 0.00 36.69 2.66
212 214 7.363793 GGCCACTACTTTATCAAATCAATGGTT 60.364 37.037 0.00 0.00 0.00 3.67
237 239 5.355350 AGAGAGACCATGCTAAAATTTTCCG 59.645 40.000 6.72 1.35 0.00 4.30
243 245 8.695456 AGACCATGCTAAAATTTTCCGAATTAT 58.305 29.630 6.72 0.00 0.00 1.28
244 246 8.647143 ACCATGCTAAAATTTTCCGAATTATG 57.353 30.769 6.72 4.48 0.00 1.90
258 260 7.447374 TCCGAATTATGAAGTTTTCACATGT 57.553 32.000 0.00 0.00 43.48 3.21
412 419 8.948853 AAAATGTTCATAGAATGTAACGTGTG 57.051 30.769 0.00 0.00 0.00 3.82
480 488 9.588096 ACACTTAAACTGGGAAGATTAGAAAAT 57.412 29.630 0.00 0.00 0.00 1.82
517 525 8.891720 TGAAAGGAAAAACAAAGATGGAAAATG 58.108 29.630 0.00 0.00 0.00 2.32
526 534 8.750515 AACAAAGATGGAAAATGAAAACCAAT 57.249 26.923 0.00 0.00 36.00 3.16
562 570 8.791327 AATCAGAAAACCAATTGAAAAACAGT 57.209 26.923 7.12 0.00 0.00 3.55
563 571 9.883142 AATCAGAAAACCAATTGAAAAACAGTA 57.117 25.926 7.12 0.00 0.00 2.74
564 572 9.883142 ATCAGAAAACCAATTGAAAAACAGTAA 57.117 25.926 7.12 0.00 0.00 2.24
605 617 3.447229 ACAACAAGGAAACACAGGAAAGG 59.553 43.478 0.00 0.00 0.00 3.11
614 626 5.753438 GGAAACACAGGAAAGGAAAATGAAC 59.247 40.000 0.00 0.00 0.00 3.18
618 630 5.156355 CACAGGAAAGGAAAATGAACGATG 58.844 41.667 0.00 0.00 0.00 3.84
653 665 2.504519 GGAGCTAATTCGGCCGGT 59.495 61.111 27.83 12.19 0.00 5.28
744 758 2.500229 TGTCGCTTAAAAAGACCAGGG 58.500 47.619 0.00 0.00 34.24 4.45
769 784 0.651031 GAGCGCATAACGGACCTTTC 59.349 55.000 11.47 0.00 43.93 2.62
773 788 0.096454 GCATAACGGACCTTTCGCAC 59.904 55.000 0.00 0.00 0.00 5.34
778 793 2.048127 GGACCTTTCGCACGCTCT 60.048 61.111 0.00 0.00 0.00 4.09
779 794 1.668151 GGACCTTTCGCACGCTCTT 60.668 57.895 0.00 0.00 0.00 2.85
806 821 3.573967 TCCATTGCCAAAGGTTTTCTCTC 59.426 43.478 0.00 0.00 0.00 3.20
812 827 0.605589 AAAGGTTTTCTCTCCGCGGG 60.606 55.000 27.83 16.54 0.00 6.13
839 866 0.394899 GCTGGCTCATGGGCTAAACT 60.395 55.000 18.99 0.00 41.48 2.66
908 935 2.067365 ATAAAAGCCATTCCCCGTCC 57.933 50.000 0.00 0.00 0.00 4.79
909 936 0.996583 TAAAAGCCATTCCCCGTCCT 59.003 50.000 0.00 0.00 0.00 3.85
911 938 0.114364 AAAGCCATTCCCCGTCCTTT 59.886 50.000 0.00 0.00 0.00 3.11
1096 1123 0.820891 CCTCCATGGCTGGTATGCAC 60.821 60.000 6.96 0.00 43.61 4.57
1099 1126 1.829533 CATGGCTGGTATGCACCCC 60.830 63.158 0.00 0.00 45.11 4.95
1204 1238 3.871594 GCCACGAACATCAATTAGTAGCT 59.128 43.478 0.00 0.00 0.00 3.32
1225 1259 0.451783 GATTTCGATTTGCGGTGCCT 59.548 50.000 0.00 0.00 41.33 4.75
1243 1277 1.471964 CTAAGATCGTGCTCGCTGTC 58.528 55.000 2.69 2.00 36.96 3.51
1259 1293 0.959553 TGTCCTCTCACGTCTTGGTC 59.040 55.000 0.00 0.00 0.00 4.02
1291 1325 3.575256 TGAACAATTTCCTGATGCTGCTT 59.425 39.130 0.00 0.00 0.00 3.91
1366 1400 1.454201 TAGACGTGAGCTGAGAGGTG 58.546 55.000 0.00 0.00 0.00 4.00
1532 1569 8.319057 AGAGAGTTGTACCATAACATTCCATA 57.681 34.615 0.00 0.00 0.00 2.74
1533 1570 8.424918 AGAGAGTTGTACCATAACATTCCATAG 58.575 37.037 0.00 0.00 0.00 2.23
1534 1571 6.992715 AGAGTTGTACCATAACATTCCATAGC 59.007 38.462 0.00 0.00 0.00 2.97
1594 1638 7.776933 TGTTAGCTCTATGACAATTTAGCTG 57.223 36.000 12.58 0.00 40.35 4.24
1621 1665 5.111293 CCATGGACAGTTAAATGATTTGCC 58.889 41.667 5.56 3.71 0.00 4.52
1735 1779 5.227569 TCTGCTCTTGAATTGTAGGAACA 57.772 39.130 0.00 0.00 0.00 3.18
1787 1831 6.572519 TGAATAAAGCTGCTTTCTTGTTGTT 58.427 32.000 29.06 10.63 35.21 2.83
1835 1879 7.121759 AGTTTGGATATCAGTGATTTGAACCAG 59.878 37.037 11.68 0.00 33.71 4.00
1897 1941 1.427809 CCTCAGATGGCATACCTGGA 58.572 55.000 14.18 2.20 36.63 3.86
1900 1944 3.197333 CCTCAGATGGCATACCTGGATAG 59.803 52.174 14.18 6.43 36.63 2.08
1901 1945 2.568956 TCAGATGGCATACCTGGATAGC 59.431 50.000 14.18 0.15 36.63 2.97
1911 1955 2.781667 ACCTGGATAGCCTTTGATCCT 58.218 47.619 0.00 0.00 41.99 3.24
2332 2387 2.352388 GAGCTCTACTCACTCGTCACT 58.648 52.381 6.43 0.00 45.49 3.41
2400 2455 4.321008 GGTTGTCGATGACACTGAGTAGAA 60.321 45.833 0.00 0.00 42.60 2.10
2541 2597 6.454795 TCTAAATCTTGATGGTTGGTTTTGC 58.545 36.000 0.00 0.00 0.00 3.68
2580 2636 4.986034 CGTTATTGGCGTCAATACAGGATA 59.014 41.667 21.52 3.76 43.28 2.59
2584 2640 2.368548 TGGCGTCAATACAGGATATGCT 59.631 45.455 0.00 0.00 0.00 3.79
2642 2701 6.773200 TGGTAGTGTGATTAATGTTTTCCACA 59.227 34.615 0.00 0.00 40.71 4.17
2684 2753 7.360575 AGGTACATTCTTTTTGTGTCGATAC 57.639 36.000 5.21 5.21 0.00 2.24
2696 2765 4.359706 TGTGTCGATACATAGTGCATGAC 58.640 43.478 11.30 0.00 38.08 3.06
2703 2772 3.541996 ACATAGTGCATGACCGATTGA 57.458 42.857 0.00 0.00 38.10 2.57
3166 3235 1.584495 AAAAAGCCAATCGCGTCCC 59.416 52.632 5.77 0.00 44.76 4.46
3167 3236 1.873270 AAAAAGCCAATCGCGTCCCC 61.873 55.000 5.77 0.00 44.76 4.81
3168 3237 3.561120 AAAGCCAATCGCGTCCCCA 62.561 57.895 5.77 0.00 44.76 4.96
3169 3238 3.561120 AAGCCAATCGCGTCCCCAA 62.561 57.895 5.77 0.00 44.76 4.12
3170 3239 3.059386 GCCAATCGCGTCCCCAAA 61.059 61.111 5.77 0.00 0.00 3.28
3171 3240 3.051392 GCCAATCGCGTCCCCAAAG 62.051 63.158 5.77 0.00 0.00 2.77
3172 3241 2.406616 CCAATCGCGTCCCCAAAGG 61.407 63.158 5.77 0.00 0.00 3.11
3173 3242 2.750237 AATCGCGTCCCCAAAGGC 60.750 61.111 5.77 0.00 34.51 4.35
3174 3243 4.796495 ATCGCGTCCCCAAAGGCC 62.796 66.667 5.77 0.00 34.51 5.19
3177 3246 4.759205 GCGTCCCCAAAGGCCCAT 62.759 66.667 0.00 0.00 34.51 4.00
3178 3247 2.037208 CGTCCCCAAAGGCCCATT 59.963 61.111 0.00 0.00 34.51 3.16
3179 3248 1.609210 CGTCCCCAAAGGCCCATTT 60.609 57.895 0.00 0.00 34.51 2.32
3180 3249 1.191489 CGTCCCCAAAGGCCCATTTT 61.191 55.000 0.00 0.00 34.51 1.82
3181 3250 1.064003 GTCCCCAAAGGCCCATTTTT 58.936 50.000 0.00 0.00 34.51 1.94
3182 3251 1.003118 GTCCCCAAAGGCCCATTTTTC 59.997 52.381 0.00 0.00 34.51 2.29
3183 3252 0.036483 CCCCAAAGGCCCATTTTTCG 60.036 55.000 0.00 0.00 0.00 3.46
3184 3253 0.673333 CCCAAAGGCCCATTTTTCGC 60.673 55.000 0.00 0.00 0.00 4.70
3185 3254 0.673333 CCAAAGGCCCATTTTTCGCC 60.673 55.000 0.00 0.00 43.35 5.54
3188 3257 4.812476 GGCCCATTTTTCGCCGGC 62.812 66.667 19.07 19.07 38.96 6.13
3189 3258 3.758931 GCCCATTTTTCGCCGGCT 61.759 61.111 26.68 0.00 36.65 5.52
3190 3259 2.969827 CCCATTTTTCGCCGGCTT 59.030 55.556 26.68 0.00 0.00 4.35
3191 3260 1.445926 CCCATTTTTCGCCGGCTTG 60.446 57.895 26.68 10.37 0.00 4.01
3192 3261 1.445926 CCATTTTTCGCCGGCTTGG 60.446 57.895 26.68 16.54 42.50 3.61
3193 3262 1.583986 CATTTTTCGCCGGCTTGGA 59.416 52.632 26.68 12.15 42.00 3.53
3194 3263 0.732538 CATTTTTCGCCGGCTTGGAC 60.733 55.000 26.68 0.00 42.00 4.02
3195 3264 1.873270 ATTTTTCGCCGGCTTGGACC 61.873 55.000 26.68 0.00 42.00 4.46
3196 3265 3.776347 TTTTCGCCGGCTTGGACCA 62.776 57.895 26.68 0.66 42.00 4.02
3197 3266 3.776347 TTTCGCCGGCTTGGACCAA 62.776 57.895 26.68 6.76 42.00 3.67
3198 3267 3.776347 TTCGCCGGCTTGGACCAAA 62.776 57.895 26.68 2.72 42.00 3.28
3199 3268 3.291383 CGCCGGCTTGGACCAAAA 61.291 61.111 26.68 0.00 42.00 2.44
3200 3269 2.635443 CGCCGGCTTGGACCAAAAT 61.635 57.895 26.68 0.00 42.00 1.82
3201 3270 1.671166 GCCGGCTTGGACCAAAATT 59.329 52.632 22.15 0.00 42.00 1.82
3202 3271 0.670239 GCCGGCTTGGACCAAAATTG 60.670 55.000 22.15 0.00 42.00 2.32
3203 3272 3.959591 GCCGGCTTGGACCAAAATTGG 62.960 57.143 22.15 10.61 46.10 3.16
3248 3317 3.956317 GTGCCGGGCGAAACGTTT 61.956 61.111 14.57 14.57 0.00 3.60
3249 3318 3.210528 TGCCGGGCGAAACGTTTT 61.211 55.556 15.89 0.00 0.00 2.43
3250 3319 2.026445 GCCGGGCGAAACGTTTTT 59.974 55.556 15.89 0.00 0.00 1.94
3251 3320 2.297195 GCCGGGCGAAACGTTTTTG 61.297 57.895 15.89 11.99 0.00 2.44
3252 3321 1.659026 CCGGGCGAAACGTTTTTGG 60.659 57.895 15.89 8.94 0.00 3.28
3253 3322 2.297195 CGGGCGAAACGTTTTTGGC 61.297 57.895 23.64 23.64 43.65 4.52
3254 3323 2.297195 GGGCGAAACGTTTTTGGCG 61.297 57.895 24.24 19.53 44.90 5.69
3255 3324 2.537578 GCGAAACGTTTTTGGCGC 59.462 55.556 23.11 23.11 36.81 6.53
3256 3325 2.827152 CGAAACGTTTTTGGCGCG 59.173 55.556 15.89 9.00 0.00 6.86
3257 3326 1.651730 CGAAACGTTTTTGGCGCGA 60.652 52.632 15.89 0.00 0.00 5.87
3258 3327 1.584920 CGAAACGTTTTTGGCGCGAG 61.585 55.000 15.89 0.00 0.00 5.03
3259 3328 0.316360 GAAACGTTTTTGGCGCGAGA 60.316 50.000 15.89 0.00 0.00 4.04
3260 3329 0.099082 AAACGTTTTTGGCGCGAGAA 59.901 45.000 12.10 0.00 0.00 2.87
3261 3330 0.590481 AACGTTTTTGGCGCGAGAAC 60.590 50.000 12.10 6.01 0.00 3.01
3262 3331 1.724581 CGTTTTTGGCGCGAGAACC 60.725 57.895 12.10 0.65 0.00 3.62
3263 3332 1.724581 GTTTTTGGCGCGAGAACCG 60.725 57.895 12.10 0.00 42.21 4.44
3264 3333 2.181521 TTTTTGGCGCGAGAACCGT 61.182 52.632 12.10 0.00 41.15 4.83
3265 3334 2.108344 TTTTTGGCGCGAGAACCGTC 62.108 55.000 12.10 0.00 41.15 4.79
3273 3342 4.144703 GAGAACCGTCGGGCCCTC 62.145 72.222 22.43 9.56 36.48 4.30
3279 3348 4.452733 CGTCGGGCCCTCCTTGAC 62.453 72.222 22.43 18.01 35.67 3.18
3280 3349 3.319198 GTCGGGCCCTCCTTGACA 61.319 66.667 22.43 0.00 37.53 3.58
3281 3350 3.003173 TCGGGCCCTCCTTGACAG 61.003 66.667 22.43 0.00 0.00 3.51
3282 3351 4.785453 CGGGCCCTCCTTGACAGC 62.785 72.222 22.43 0.00 0.00 4.40
3283 3352 4.785453 GGGCCCTCCTTGACAGCG 62.785 72.222 17.04 0.00 0.00 5.18
3284 3353 3.706373 GGCCCTCCTTGACAGCGA 61.706 66.667 0.00 0.00 0.00 4.93
3285 3354 2.435059 GCCCTCCTTGACAGCGAC 60.435 66.667 0.00 0.00 0.00 5.19
3286 3355 2.948720 GCCCTCCTTGACAGCGACT 61.949 63.158 0.00 0.00 0.00 4.18
3287 3356 1.216710 CCCTCCTTGACAGCGACTC 59.783 63.158 0.00 0.00 0.00 3.36
3288 3357 1.153939 CCTCCTTGACAGCGACTCG 60.154 63.158 0.00 0.00 0.00 4.18
3289 3358 1.153939 CTCCTTGACAGCGACTCGG 60.154 63.158 0.00 0.00 0.00 4.63
3290 3359 2.811317 CCTTGACAGCGACTCGGC 60.811 66.667 0.00 0.00 0.00 5.54
3291 3360 2.259818 CTTGACAGCGACTCGGCT 59.740 61.111 0.00 0.00 46.13 5.52
3292 3361 1.803519 CTTGACAGCGACTCGGCTC 60.804 63.158 0.00 0.00 42.53 4.70
3293 3362 2.206515 CTTGACAGCGACTCGGCTCT 62.207 60.000 0.00 0.00 42.53 4.09
3294 3363 1.806461 TTGACAGCGACTCGGCTCTT 61.806 55.000 0.00 0.00 42.53 2.85
3295 3364 1.515304 GACAGCGACTCGGCTCTTC 60.515 63.158 0.00 0.00 42.53 2.87
3296 3365 1.928706 GACAGCGACTCGGCTCTTCT 61.929 60.000 0.00 0.00 42.53 2.85
3297 3366 1.226547 CAGCGACTCGGCTCTTCTC 60.227 63.158 0.00 0.00 42.53 2.87
3298 3367 2.277628 GCGACTCGGCTCTTCTCG 60.278 66.667 0.00 0.00 0.00 4.04
3299 3368 2.277628 CGACTCGGCTCTTCTCGC 60.278 66.667 0.00 0.00 0.00 5.03
3300 3369 2.103340 GACTCGGCTCTTCTCGCC 59.897 66.667 0.00 0.00 44.11 5.54
3305 3374 2.888051 GGCTCTTCTCGCCGCTTC 60.888 66.667 0.00 0.00 37.87 3.86
3306 3375 3.251043 GCTCTTCTCGCCGCTTCG 61.251 66.667 0.00 0.00 0.00 3.79
3307 3376 2.179517 CTCTTCTCGCCGCTTCGT 59.820 61.111 0.00 0.00 0.00 3.85
3308 3377 1.870016 CTCTTCTCGCCGCTTCGTC 60.870 63.158 0.00 0.00 0.00 4.20
3309 3378 3.241059 CTTCTCGCCGCTTCGTCG 61.241 66.667 0.00 0.00 0.00 5.12
3310 3379 3.948086 CTTCTCGCCGCTTCGTCGT 62.948 63.158 0.00 0.00 0.00 4.34
3311 3380 3.940975 TTCTCGCCGCTTCGTCGTC 62.941 63.158 0.00 0.00 0.00 4.20
3315 3384 4.415332 GCCGCTTCGTCGTCCTCA 62.415 66.667 0.00 0.00 0.00 3.86
3316 3385 2.490217 CCGCTTCGTCGTCCTCAT 59.510 61.111 0.00 0.00 0.00 2.90
3317 3386 1.586564 CCGCTTCGTCGTCCTCATC 60.587 63.158 0.00 0.00 0.00 2.92
3318 3387 1.934956 CGCTTCGTCGTCCTCATCG 60.935 63.158 0.00 0.00 0.00 3.84
3319 3388 2.224885 GCTTCGTCGTCCTCATCGC 61.225 63.158 0.00 0.00 0.00 4.58
3320 3389 1.586564 CTTCGTCGTCCTCATCGCC 60.587 63.158 0.00 0.00 0.00 5.54
3321 3390 1.994507 CTTCGTCGTCCTCATCGCCT 61.995 60.000 0.00 0.00 0.00 5.52
3322 3391 1.592400 TTCGTCGTCCTCATCGCCTT 61.592 55.000 0.00 0.00 0.00 4.35
3323 3392 1.874019 CGTCGTCCTCATCGCCTTG 60.874 63.158 0.00 0.00 0.00 3.61
3324 3393 1.519455 GTCGTCCTCATCGCCTTGG 60.519 63.158 0.00 0.00 0.00 3.61
3325 3394 1.982395 TCGTCCTCATCGCCTTGGT 60.982 57.895 0.00 0.00 0.00 3.67
3326 3395 1.079127 CGTCCTCATCGCCTTGGTT 60.079 57.895 0.00 0.00 0.00 3.67
3327 3396 1.084370 CGTCCTCATCGCCTTGGTTC 61.084 60.000 0.00 0.00 0.00 3.62
3328 3397 0.744771 GTCCTCATCGCCTTGGTTCC 60.745 60.000 0.00 0.00 0.00 3.62
3329 3398 0.909610 TCCTCATCGCCTTGGTTCCT 60.910 55.000 0.00 0.00 0.00 3.36
3330 3399 0.745845 CCTCATCGCCTTGGTTCCTG 60.746 60.000 0.00 0.00 0.00 3.86
3331 3400 1.372087 CTCATCGCCTTGGTTCCTGC 61.372 60.000 0.00 0.00 0.00 4.85
3333 3402 3.976701 ATCGCCTTGGTTCCTGCGG 62.977 63.158 15.98 0.00 46.51 5.69
3336 3405 4.697756 CCTTGGTTCCTGCGGCGA 62.698 66.667 12.98 0.00 0.00 5.54
3337 3406 2.668212 CTTGGTTCCTGCGGCGAA 60.668 61.111 12.98 0.00 0.00 4.70
3338 3407 2.033448 TTGGTTCCTGCGGCGAAT 59.967 55.556 12.98 0.00 0.00 3.34
3339 3408 1.982073 CTTGGTTCCTGCGGCGAATC 61.982 60.000 12.98 0.00 0.00 2.52
3340 3409 2.435938 GGTTCCTGCGGCGAATCA 60.436 61.111 12.98 0.00 0.00 2.57
3341 3410 2.038269 GGTTCCTGCGGCGAATCAA 61.038 57.895 12.98 0.00 0.00 2.57
3342 3411 1.376609 GGTTCCTGCGGCGAATCAAT 61.377 55.000 12.98 0.00 0.00 2.57
3343 3412 0.248215 GTTCCTGCGGCGAATCAATG 60.248 55.000 12.98 0.00 0.00 2.82
3344 3413 1.992233 TTCCTGCGGCGAATCAATGC 61.992 55.000 12.98 0.00 0.00 3.56
3351 3420 3.727419 GCGAATCAATGCCAAAGCT 57.273 47.368 0.00 0.00 40.80 3.74
3352 3421 1.274596 GCGAATCAATGCCAAAGCTG 58.725 50.000 0.00 0.00 40.80 4.24
3353 3422 1.274596 CGAATCAATGCCAAAGCTGC 58.725 50.000 0.00 0.00 40.80 5.25
3354 3423 1.648504 GAATCAATGCCAAAGCTGCC 58.351 50.000 0.00 0.00 40.80 4.85
3355 3424 0.108520 AATCAATGCCAAAGCTGCCG 60.109 50.000 0.00 0.00 40.80 5.69
3356 3425 2.567564 ATCAATGCCAAAGCTGCCGC 62.568 55.000 0.00 0.00 40.80 6.53
3357 3426 4.424566 AATGCCAAAGCTGCCGCG 62.425 61.111 0.00 0.00 42.32 6.46
3372 3441 4.500116 GCGCCGGTCAGTCTCCTC 62.500 72.222 1.90 0.00 0.00 3.71
3373 3442 3.827898 CGCCGGTCAGTCTCCTCC 61.828 72.222 1.90 0.00 0.00 4.30
3374 3443 2.680352 GCCGGTCAGTCTCCTCCA 60.680 66.667 1.90 0.00 0.00 3.86
3375 3444 2.060980 GCCGGTCAGTCTCCTCCAT 61.061 63.158 1.90 0.00 0.00 3.41
3376 3445 1.617947 GCCGGTCAGTCTCCTCCATT 61.618 60.000 1.90 0.00 0.00 3.16
3377 3446 0.176680 CCGGTCAGTCTCCTCCATTG 59.823 60.000 0.00 0.00 0.00 2.82
3378 3447 1.186200 CGGTCAGTCTCCTCCATTGA 58.814 55.000 0.00 0.00 0.00 2.57
3379 3448 1.759445 CGGTCAGTCTCCTCCATTGAT 59.241 52.381 0.00 0.00 0.00 2.57
3380 3449 2.482664 CGGTCAGTCTCCTCCATTGATG 60.483 54.545 0.00 0.00 0.00 3.07
3381 3450 2.559440 GTCAGTCTCCTCCATTGATGC 58.441 52.381 0.00 0.00 0.00 3.91
3382 3451 1.487976 TCAGTCTCCTCCATTGATGCC 59.512 52.381 0.00 0.00 0.00 4.40
3383 3452 1.489649 CAGTCTCCTCCATTGATGCCT 59.510 52.381 0.00 0.00 0.00 4.75
3384 3453 1.767681 AGTCTCCTCCATTGATGCCTC 59.232 52.381 0.00 0.00 0.00 4.70
3385 3454 1.487976 GTCTCCTCCATTGATGCCTCA 59.512 52.381 0.00 0.00 0.00 3.86
3386 3455 1.487976 TCTCCTCCATTGATGCCTCAC 59.512 52.381 0.00 0.00 0.00 3.51
3387 3456 0.178767 TCCTCCATTGATGCCTCACG 59.821 55.000 0.00 0.00 0.00 4.35
3388 3457 0.816825 CCTCCATTGATGCCTCACGG 60.817 60.000 0.00 0.00 0.00 4.94
3389 3458 0.178767 CTCCATTGATGCCTCACGGA 59.821 55.000 8.49 8.49 0.00 4.69
3390 3459 0.107703 TCCATTGATGCCTCACGGAC 60.108 55.000 5.51 0.00 0.00 4.79
3391 3460 1.431488 CCATTGATGCCTCACGGACG 61.431 60.000 1.52 0.00 0.00 4.79
3392 3461 1.153369 ATTGATGCCTCACGGACGG 60.153 57.895 0.00 0.00 0.00 4.79
3393 3462 3.950794 TTGATGCCTCACGGACGGC 62.951 63.158 4.41 4.41 46.46 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 9.343539 GAGGGAGCATGTTAAAATTACTCTTAT 57.656 33.333 0.00 0.00 0.00 1.73
114 115 8.548877 AGAGGGAGCATGTTAAAATTACTCTTA 58.451 33.333 0.00 0.00 0.00 2.10
159 160 2.448453 ACTCTTACCTTCTGACCTCCG 58.552 52.381 0.00 0.00 0.00 4.63
161 162 7.262048 CAGATTAACTCTTACCTTCTGACCTC 58.738 42.308 0.00 0.00 32.77 3.85
164 165 5.813157 GCCAGATTAACTCTTACCTTCTGAC 59.187 44.000 0.00 0.00 32.77 3.51
187 188 7.100458 ACCATTGATTTGATAAAGTAGTGGC 57.900 36.000 0.00 0.00 0.00 5.01
197 198 8.089625 TGGTCTCTCTAACCATTGATTTGATA 57.910 34.615 0.00 0.00 41.84 2.15
212 214 6.538742 CGGAAAATTTTAGCATGGTCTCTCTA 59.461 38.462 0.00 0.00 0.00 2.43
448 456 8.528044 AATCTTCCCAGTTTAAGTGTACAAAA 57.472 30.769 0.00 0.00 0.00 2.44
504 512 8.977267 TCAATTGGTTTTCATTTTCCATCTTT 57.023 26.923 5.42 0.00 0.00 2.52
539 547 9.883142 ATTACTGTTTTTCAATTGGTTTTCTGA 57.117 25.926 5.42 0.00 0.00 3.27
600 612 6.923508 AGGTTTTCATCGTTCATTTTCCTTTC 59.076 34.615 0.00 0.00 0.00 2.62
605 617 6.447162 AGGAAGGTTTTCATCGTTCATTTTC 58.553 36.000 0.00 0.00 34.90 2.29
614 626 4.379082 CCGGTTTTAGGAAGGTTTTCATCG 60.379 45.833 0.00 0.00 34.90 3.84
618 630 3.057736 GCTCCGGTTTTAGGAAGGTTTTC 60.058 47.826 0.00 0.00 37.32 2.29
744 758 2.703409 CGTTATGCGCTCACTGCC 59.297 61.111 9.73 0.00 38.78 4.85
769 784 1.016130 ATGGACTTGAAGAGCGTGCG 61.016 55.000 0.00 0.00 0.00 5.34
773 788 0.449388 GGCAATGGACTTGAAGAGCG 59.551 55.000 0.00 0.00 36.97 5.03
778 793 2.676748 ACCTTTGGCAATGGACTTGAA 58.323 42.857 31.86 0.86 36.97 2.69
779 794 2.380064 ACCTTTGGCAATGGACTTGA 57.620 45.000 31.86 1.59 36.97 3.02
816 831 0.039472 TAGCCCATGAGCCAGCAAAA 59.961 50.000 0.00 0.00 0.00 2.44
825 852 1.673168 GCCTCAGTTTAGCCCATGAG 58.327 55.000 0.00 0.00 39.10 2.90
839 866 1.141657 GCTGATAAGTCATGGGCCTCA 59.858 52.381 4.53 0.00 32.98 3.86
876 903 2.349532 GGCTTTTATATGCTCGCGTTCC 60.350 50.000 5.77 0.00 0.00 3.62
1099 1126 4.176752 GAAGTAGCAGGGCCGGGG 62.177 72.222 2.18 0.00 0.00 5.73
1103 1130 1.153269 GAGCAGAAGTAGCAGGGCC 60.153 63.158 0.00 0.00 0.00 5.80
1204 1238 1.668751 GGCACCGCAAATCGAAATCTA 59.331 47.619 0.00 0.00 41.67 1.98
1225 1259 0.100682 GGACAGCGAGCACGATCTTA 59.899 55.000 8.01 0.00 42.66 2.10
1243 1277 1.213013 CGGACCAAGACGTGAGAGG 59.787 63.158 0.00 0.00 0.00 3.69
1259 1293 7.320443 TCAGGAAATTGTTCAATCTATTCGG 57.680 36.000 0.00 0.00 35.25 4.30
1318 1352 5.663106 AGATTAGAGAAGTATGACAGGGCAA 59.337 40.000 0.00 0.00 0.00 4.52
1366 1400 8.597227 CGTGATAGTACAGCTCTATGAGTATAC 58.403 40.741 0.00 0.00 31.39 1.47
1532 1569 2.867109 ACAACTAGTTGCATGAGGCT 57.133 45.000 30.97 10.02 44.03 4.58
1533 1570 4.035675 GGATTACAACTAGTTGCATGAGGC 59.964 45.833 30.97 15.74 44.03 4.70
1534 1571 5.185454 TGGATTACAACTAGTTGCATGAGG 58.815 41.667 30.97 10.03 44.03 3.86
1594 1638 1.102978 ATTTAACTGTCCATGGGCGC 58.897 50.000 12.67 0.00 0.00 6.53
1735 1779 5.065218 CCTGAATGAACTACGCTTAAGCATT 59.935 40.000 26.29 15.89 42.21 3.56
1736 1780 4.572389 CCTGAATGAACTACGCTTAAGCAT 59.428 41.667 26.29 15.10 42.21 3.79
1744 1788 3.521560 TCATGACCTGAATGAACTACGC 58.478 45.455 0.00 0.00 31.17 4.42
1787 1831 5.732661 ACTAGCCCTAATTTAACCAACCCTA 59.267 40.000 0.00 0.00 0.00 3.53
1835 1879 8.547967 TCAAAGTAGTTTCCATGATAAGTGAC 57.452 34.615 0.00 0.00 0.00 3.67
1897 1941 5.013599 GGGATTGAGTAGGATCAAAGGCTAT 59.986 44.000 0.00 0.00 42.21 2.97
1900 1944 3.481453 GGGATTGAGTAGGATCAAAGGC 58.519 50.000 0.00 0.00 42.21 4.35
1901 1945 3.388024 TCGGGATTGAGTAGGATCAAAGG 59.612 47.826 0.00 0.00 42.21 3.11
1911 1955 5.741011 AGCATTTTAGTTCGGGATTGAGTA 58.259 37.500 0.00 0.00 0.00 2.59
2380 2435 4.944317 AGATTCTACTCAGTGTCATCGACA 59.056 41.667 0.00 0.00 40.50 4.35
2469 2525 7.445402 CGATATTCCATACTCCAAAACTTCCAT 59.555 37.037 0.00 0.00 0.00 3.41
2531 2587 3.320826 ACAGTATGAAGGGCAAAACCAAC 59.679 43.478 0.00 0.00 38.50 3.77
2541 2597 2.386661 AACGAGCACAGTATGAAGGG 57.613 50.000 0.00 0.00 39.69 3.95
2584 2640 1.761449 TTCCAACTGCAAGCTCAACA 58.239 45.000 0.00 0.00 37.60 3.33
2642 2701 2.158519 ACCTTCGGACCTTCCAATTTGT 60.159 45.455 0.00 0.00 35.91 2.83
2643 2702 2.514803 ACCTTCGGACCTTCCAATTTG 58.485 47.619 0.00 0.00 35.91 2.32
2668 2736 5.929415 TGCACTATGTATCGACACAAAAAGA 59.071 36.000 0.00 0.00 38.76 2.52
2684 2753 4.400036 CATCAATCGGTCATGCACTATG 57.600 45.455 0.00 0.00 38.17 2.23
3148 3217 1.584495 GGGACGCGATTGGCTTTTT 59.416 52.632 15.93 0.00 40.44 1.94
3149 3218 2.340328 GGGGACGCGATTGGCTTTT 61.340 57.895 15.93 0.00 40.44 2.27
3150 3219 2.750237 GGGGACGCGATTGGCTTT 60.750 61.111 15.93 0.00 40.44 3.51
3151 3220 3.561120 TTGGGGACGCGATTGGCTT 62.561 57.895 15.93 0.00 40.44 4.35
3152 3221 3.561120 TTTGGGGACGCGATTGGCT 62.561 57.895 15.93 0.00 40.44 4.75
3153 3222 3.051392 CTTTGGGGACGCGATTGGC 62.051 63.158 15.93 0.00 38.69 4.52
3154 3223 2.406616 CCTTTGGGGACGCGATTGG 61.407 63.158 15.93 0.00 37.23 3.16
3155 3224 3.051392 GCCTTTGGGGACGCGATTG 62.051 63.158 15.93 0.00 37.23 2.67
3156 3225 2.750237 GCCTTTGGGGACGCGATT 60.750 61.111 15.93 0.00 37.23 3.34
3157 3226 4.796495 GGCCTTTGGGGACGCGAT 62.796 66.667 15.93 0.00 37.23 4.58
3160 3229 4.759205 ATGGGCCTTTGGGGACGC 62.759 66.667 4.53 0.00 46.52 5.19
3161 3230 1.191489 AAAATGGGCCTTTGGGGACG 61.191 55.000 4.53 0.00 46.52 4.79
3162 3231 1.003118 GAAAAATGGGCCTTTGGGGAC 59.997 52.381 4.53 0.00 44.23 4.46
3163 3232 1.357137 GAAAAATGGGCCTTTGGGGA 58.643 50.000 4.53 0.00 37.23 4.81
3164 3233 0.036483 CGAAAAATGGGCCTTTGGGG 60.036 55.000 4.53 0.00 38.36 4.96
3165 3234 0.673333 GCGAAAAATGGGCCTTTGGG 60.673 55.000 4.53 0.00 0.00 4.12
3166 3235 0.673333 GGCGAAAAATGGGCCTTTGG 60.673 55.000 4.53 0.00 43.52 3.28
3167 3236 1.013524 CGGCGAAAAATGGGCCTTTG 61.014 55.000 0.00 0.00 44.68 2.77
3168 3237 1.291906 CGGCGAAAAATGGGCCTTT 59.708 52.632 0.00 0.76 44.68 3.11
3169 3238 2.645192 CCGGCGAAAAATGGGCCTT 61.645 57.895 9.30 0.00 44.68 4.35
3170 3239 3.068064 CCGGCGAAAAATGGGCCT 61.068 61.111 9.30 0.00 44.68 5.19
3171 3240 4.812476 GCCGGCGAAAAATGGGCC 62.812 66.667 12.58 0.00 43.42 5.80
3172 3241 3.295304 AAGCCGGCGAAAAATGGGC 62.295 57.895 23.20 0.00 44.07 5.36
3173 3242 1.445926 CAAGCCGGCGAAAAATGGG 60.446 57.895 23.20 0.00 0.00 4.00
3174 3243 1.445926 CCAAGCCGGCGAAAAATGG 60.446 57.895 23.20 18.72 0.00 3.16
3175 3244 0.732538 GTCCAAGCCGGCGAAAAATG 60.733 55.000 23.20 13.84 33.14 2.32
3176 3245 1.584495 GTCCAAGCCGGCGAAAAAT 59.416 52.632 23.20 0.00 33.14 1.82
3177 3246 2.557372 GGTCCAAGCCGGCGAAAAA 61.557 57.895 23.20 3.88 33.14 1.94
3178 3247 2.981350 GGTCCAAGCCGGCGAAAA 60.981 61.111 23.20 5.56 33.14 2.29
3179 3248 3.776347 TTGGTCCAAGCCGGCGAAA 62.776 57.895 23.20 5.13 33.14 3.46
3180 3249 3.776347 TTTGGTCCAAGCCGGCGAA 62.776 57.895 23.20 4.72 33.14 4.70
3181 3250 3.776347 TTTTGGTCCAAGCCGGCGA 62.776 57.895 23.20 10.01 33.14 5.54
3182 3251 2.153547 AATTTTGGTCCAAGCCGGCG 62.154 55.000 23.20 7.72 33.14 6.46
3183 3252 0.670239 CAATTTTGGTCCAAGCCGGC 60.670 55.000 21.89 21.89 33.14 6.13
3184 3253 0.037419 CCAATTTTGGTCCAAGCCGG 60.037 55.000 4.09 0.00 43.43 6.13
3185 3254 3.512978 CCAATTTTGGTCCAAGCCG 57.487 52.632 4.09 0.00 43.43 5.52
3231 3300 2.940250 AAAAACGTTTCGCCCGGCAC 62.940 55.000 15.01 0.00 0.00 5.01
3232 3301 2.772691 AAAAACGTTTCGCCCGGCA 61.773 52.632 15.01 0.00 0.00 5.69
3233 3302 2.026445 AAAAACGTTTCGCCCGGC 59.974 55.556 15.01 0.00 0.00 6.13
3234 3303 1.659026 CCAAAAACGTTTCGCCCGG 60.659 57.895 15.01 6.85 0.00 5.73
3235 3304 2.297195 GCCAAAAACGTTTCGCCCG 61.297 57.895 15.01 1.90 0.00 6.13
3236 3305 2.297195 CGCCAAAAACGTTTCGCCC 61.297 57.895 15.01 3.07 27.90 6.13
3237 3306 2.923177 GCGCCAAAAACGTTTCGCC 61.923 57.895 25.54 13.13 35.20 5.54
3238 3307 2.537578 GCGCCAAAAACGTTTCGC 59.462 55.556 23.11 23.11 34.23 4.70
3239 3308 1.584920 CTCGCGCCAAAAACGTTTCG 61.585 55.000 15.01 14.18 0.00 3.46
3240 3309 0.316360 TCTCGCGCCAAAAACGTTTC 60.316 50.000 15.01 0.35 0.00 2.78
3241 3310 0.099082 TTCTCGCGCCAAAAACGTTT 59.901 45.000 7.96 7.96 0.00 3.60
3242 3311 0.590481 GTTCTCGCGCCAAAAACGTT 60.590 50.000 0.00 0.00 0.00 3.99
3243 3312 1.010462 GTTCTCGCGCCAAAAACGT 60.010 52.632 0.00 0.00 0.00 3.99
3244 3313 1.724581 GGTTCTCGCGCCAAAAACG 60.725 57.895 0.00 0.00 0.00 3.60
3245 3314 1.724581 CGGTTCTCGCGCCAAAAAC 60.725 57.895 0.00 1.17 0.00 2.43
3246 3315 2.108344 GACGGTTCTCGCGCCAAAAA 62.108 55.000 0.00 0.00 43.89 1.94
3247 3316 2.589442 ACGGTTCTCGCGCCAAAA 60.589 55.556 0.00 0.00 43.89 2.44
3248 3317 3.039588 GACGGTTCTCGCGCCAAA 61.040 61.111 0.00 0.00 43.89 3.28
3256 3325 4.144703 GAGGGCCCGACGGTTCTC 62.145 72.222 18.44 12.14 0.00 2.87
3262 3331 4.452733 GTCAAGGAGGGCCCGACG 62.453 72.222 18.44 4.63 40.87 5.12
3263 3332 3.316573 CTGTCAAGGAGGGCCCGAC 62.317 68.421 18.44 17.76 40.87 4.79
3264 3333 3.003173 CTGTCAAGGAGGGCCCGA 61.003 66.667 18.44 3.69 40.87 5.14
3265 3334 4.785453 GCTGTCAAGGAGGGCCCG 62.785 72.222 18.44 0.58 40.87 6.13
3266 3335 4.785453 CGCTGTCAAGGAGGGCCC 62.785 72.222 16.46 16.46 33.31 5.80
3267 3336 3.706373 TCGCTGTCAAGGAGGGCC 61.706 66.667 0.00 0.00 0.00 5.80
3268 3337 2.435059 GTCGCTGTCAAGGAGGGC 60.435 66.667 0.00 0.00 0.00 5.19
3269 3338 1.216710 GAGTCGCTGTCAAGGAGGG 59.783 63.158 0.00 0.00 0.00 4.30
3270 3339 1.153939 CGAGTCGCTGTCAAGGAGG 60.154 63.158 0.00 0.00 0.00 4.30
3271 3340 1.153939 CCGAGTCGCTGTCAAGGAG 60.154 63.158 7.12 0.00 0.00 3.69
3272 3341 2.962569 CCGAGTCGCTGTCAAGGA 59.037 61.111 7.12 0.00 0.00 3.36
3273 3342 2.811317 GCCGAGTCGCTGTCAAGG 60.811 66.667 7.12 0.00 0.00 3.61
3274 3343 1.803519 GAGCCGAGTCGCTGTCAAG 60.804 63.158 7.12 0.00 39.87 3.02
3275 3344 1.806461 AAGAGCCGAGTCGCTGTCAA 61.806 55.000 7.12 0.00 39.87 3.18
3276 3345 2.201436 GAAGAGCCGAGTCGCTGTCA 62.201 60.000 7.12 0.00 39.87 3.58
3277 3346 1.515304 GAAGAGCCGAGTCGCTGTC 60.515 63.158 7.12 2.96 39.87 3.51
3278 3347 1.928706 GAGAAGAGCCGAGTCGCTGT 61.929 60.000 7.12 3.90 39.87 4.40
3279 3348 1.226547 GAGAAGAGCCGAGTCGCTG 60.227 63.158 7.12 0.00 39.87 5.18
3280 3349 2.756025 CGAGAAGAGCCGAGTCGCT 61.756 63.158 7.12 8.14 43.42 4.93
3281 3350 2.277628 CGAGAAGAGCCGAGTCGC 60.278 66.667 7.12 2.73 0.00 5.19
3282 3351 2.277628 GCGAGAAGAGCCGAGTCG 60.278 66.667 5.29 5.29 0.00 4.18
3283 3352 2.103340 GGCGAGAAGAGCCGAGTC 59.897 66.667 0.00 0.00 45.58 3.36
3289 3358 3.251043 CGAAGCGGCGAGAAGAGC 61.251 66.667 12.98 0.00 0.00 4.09
3290 3359 1.870016 GACGAAGCGGCGAGAAGAG 60.870 63.158 12.98 0.00 34.83 2.85
3291 3360 2.178521 GACGAAGCGGCGAGAAGA 59.821 61.111 12.98 0.00 34.83 2.87
3298 3367 3.701604 ATGAGGACGACGAAGCGGC 62.702 63.158 0.00 0.00 38.96 6.53
3299 3368 1.586564 GATGAGGACGACGAAGCGG 60.587 63.158 0.00 0.00 35.12 5.52
3300 3369 1.934956 CGATGAGGACGACGAAGCG 60.935 63.158 0.00 0.00 37.29 4.68
3301 3370 2.224885 GCGATGAGGACGACGAAGC 61.225 63.158 0.00 0.00 0.00 3.86
3302 3371 1.586564 GGCGATGAGGACGACGAAG 60.587 63.158 0.00 0.00 0.00 3.79
3303 3372 1.592400 AAGGCGATGAGGACGACGAA 61.592 55.000 0.00 0.00 44.04 3.85
3304 3373 2.044555 AAGGCGATGAGGACGACGA 61.045 57.895 0.00 0.00 44.04 4.20
3305 3374 1.874019 CAAGGCGATGAGGACGACG 60.874 63.158 0.00 0.00 44.04 5.12
3306 3375 1.519455 CCAAGGCGATGAGGACGAC 60.519 63.158 0.00 0.00 39.24 4.34
3307 3376 1.541310 AACCAAGGCGATGAGGACGA 61.541 55.000 0.00 0.00 0.00 4.20
3308 3377 1.079127 AACCAAGGCGATGAGGACG 60.079 57.895 0.00 0.00 0.00 4.79
3309 3378 0.744771 GGAACCAAGGCGATGAGGAC 60.745 60.000 0.00 0.00 0.00 3.85
3310 3379 0.909610 AGGAACCAAGGCGATGAGGA 60.910 55.000 0.00 0.00 0.00 3.71
3311 3380 0.745845 CAGGAACCAAGGCGATGAGG 60.746 60.000 0.00 0.00 0.00 3.86
3312 3381 1.372087 GCAGGAACCAAGGCGATGAG 61.372 60.000 0.00 0.00 0.00 2.90
3313 3382 1.377202 GCAGGAACCAAGGCGATGA 60.377 57.895 0.00 0.00 0.00 2.92
3314 3383 3.190878 GCAGGAACCAAGGCGATG 58.809 61.111 0.00 0.00 0.00 3.84
3328 3397 2.025156 GGCATTGATTCGCCGCAG 59.975 61.111 0.00 0.00 38.82 5.18
3333 3402 1.274596 CAGCTTTGGCATTGATTCGC 58.725 50.000 0.00 0.00 41.70 4.70
3334 3403 1.274596 GCAGCTTTGGCATTGATTCG 58.725 50.000 0.00 0.00 41.70 3.34
3335 3404 1.648504 GGCAGCTTTGGCATTGATTC 58.351 50.000 0.00 0.00 41.70 2.52
3336 3405 0.108520 CGGCAGCTTTGGCATTGATT 60.109 50.000 0.46 0.00 41.70 2.57
3337 3406 1.514087 CGGCAGCTTTGGCATTGAT 59.486 52.632 0.46 0.00 41.70 2.57
3338 3407 2.964174 CGGCAGCTTTGGCATTGA 59.036 55.556 0.46 0.00 41.70 2.57
3339 3408 2.812178 GCGGCAGCTTTGGCATTG 60.812 61.111 0.00 0.00 41.70 2.82
3340 3409 4.424566 CGCGGCAGCTTTGGCATT 62.425 61.111 7.38 0.00 42.32 3.56
3355 3424 4.500116 GAGGAGACTGACCGGCGC 62.500 72.222 0.00 0.00 44.43 6.53
3356 3425 3.827898 GGAGGAGACTGACCGGCG 61.828 72.222 0.00 0.00 44.43 6.46
3357 3426 1.617947 AATGGAGGAGACTGACCGGC 61.618 60.000 0.00 0.00 44.43 6.13
3358 3427 0.176680 CAATGGAGGAGACTGACCGG 59.823 60.000 0.00 0.00 44.43 5.28
3359 3428 1.186200 TCAATGGAGGAGACTGACCG 58.814 55.000 0.00 0.00 44.43 4.79
3360 3429 2.744494 GCATCAATGGAGGAGACTGACC 60.744 54.545 0.00 0.00 44.43 4.02
3361 3430 2.559440 GCATCAATGGAGGAGACTGAC 58.441 52.381 0.00 0.00 44.43 3.51
3362 3431 1.487976 GGCATCAATGGAGGAGACTGA 59.512 52.381 0.00 0.00 44.43 3.41
3363 3432 1.489649 AGGCATCAATGGAGGAGACTG 59.510 52.381 0.00 0.00 44.43 3.51
3364 3433 2.895723 TGAGGCATCAATGGAGGAGACT 60.896 50.000 0.00 0.00 36.19 3.24
3365 3434 1.487976 TGAGGCATCAATGGAGGAGAC 59.512 52.381 0.00 0.00 30.61 3.36
3366 3435 1.487976 GTGAGGCATCAATGGAGGAGA 59.512 52.381 0.92 0.00 37.14 3.71
3367 3436 1.809271 CGTGAGGCATCAATGGAGGAG 60.809 57.143 0.92 0.00 37.14 3.69
3368 3437 0.178767 CGTGAGGCATCAATGGAGGA 59.821 55.000 0.92 0.00 37.14 3.71
3369 3438 2.699073 CGTGAGGCATCAATGGAGG 58.301 57.895 0.92 0.00 37.14 4.30



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.