Multiple sequence alignment - TraesCS7B01G146600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7B01G146600
chr7B
100.000
2706
0
0
1
2706
191726608
191729313
0.000000e+00
4998
1
TraesCS7B01G146600
chr7B
92.055
579
35
4
1006
1574
698631880
698631303
0.000000e+00
804
2
TraesCS7B01G146600
chr7B
100.000
272
0
0
3128
3399
191729735
191730006
1.410000e-138
503
3
TraesCS7B01G146600
chr7B
92.708
96
7
0
116
211
588256292
588256197
4.570000e-29
139
4
TraesCS7B01G146600
chr7B
91.667
96
8
0
116
211
588243738
588243643
2.130000e-27
134
5
TraesCS7B01G146600
chr7A
89.964
2740
188
54
2
2706
222506421
222503734
0.000000e+00
3456
6
TraesCS7B01G146600
chr7A
76.259
278
43
18
3128
3396
41474797
41474534
3.560000e-25
126
7
TraesCS7B01G146600
chr7D
91.472
2486
135
35
270
2706
209826027
209823570
0.000000e+00
3345
8
TraesCS7B01G146600
chr7D
81.533
287
37
11
3128
3399
180858603
180858888
4.410000e-54
222
9
TraesCS7B01G146600
chr7D
92.157
102
7
1
116
216
244451558
244451457
3.540000e-30
143
10
TraesCS7B01G146600
chr6B
92.401
579
32
5
1006
1574
68219376
68219952
0.000000e+00
815
11
TraesCS7B01G146600
chr6B
93.293
164
11
0
3236
3399
419778703
419778540
3.390000e-60
243
12
TraesCS7B01G146600
chr4A
91.364
579
39
4
1006
1574
661809014
661808437
0.000000e+00
782
13
TraesCS7B01G146600
chr5A
91.192
579
40
4
1006
1574
564682000
564681423
0.000000e+00
776
14
TraesCS7B01G146600
chr5A
77.419
279
39
18
3128
3396
378276644
378276908
9.830000e-31
145
15
TraesCS7B01G146600
chr2B
90.975
277
20
4
3128
3399
519671651
519671375
5.360000e-98
368
16
TraesCS7B01G146600
chr2B
96.571
175
6
0
1006
1180
321106296
321106470
1.190000e-74
291
17
TraesCS7B01G146600
chr2B
83.113
302
18
12
3130
3399
717494425
717494725
9.420000e-61
244
18
TraesCS7B01G146600
chr2B
94.702
151
8
0
1272
1422
321106553
321106703
5.670000e-58
235
19
TraesCS7B01G146600
chr3A
94.495
218
12
0
1006
1223
346428086
346427869
1.510000e-88
337
20
TraesCS7B01G146600
chr3A
94.318
176
10
0
1006
1181
373432391
373432566
1.550000e-68
270
21
TraesCS7B01G146600
chr1D
85.467
289
25
9
3128
3399
391334902
391335190
5.550000e-73
285
22
TraesCS7B01G146600
chr1D
92.553
94
7
0
118
211
231021203
231021110
5.920000e-28
135
23
TraesCS7B01G146600
chr3B
84.175
297
22
11
3128
3399
84902465
84902761
7.230000e-67
265
24
TraesCS7B01G146600
chr3B
89.796
98
9
1
121
218
85338125
85338029
1.280000e-24
124
25
TraesCS7B01G146600
chr5D
92.442
172
12
1
3229
3399
63554279
63554108
9.420000e-61
244
26
TraesCS7B01G146600
chr5D
90.435
115
9
2
98
211
480858414
480858527
2.110000e-32
150
27
TraesCS7B01G146600
chr2A
84.898
245
34
3
3155
3399
767388968
767388727
9.420000e-61
244
28
TraesCS7B01G146600
chr2A
82.759
203
28
6
3165
3361
41609540
41609339
1.250000e-39
174
29
TraesCS7B01G146600
chr2A
92.000
100
7
1
118
216
267885449
267885350
4.570000e-29
139
30
TraesCS7B01G146600
chr3D
84.470
264
22
8
3155
3399
474652239
474652502
3.390000e-60
243
31
TraesCS7B01G146600
chr3D
83.094
278
34
12
3128
3393
575772881
575772605
1.220000e-59
241
32
TraesCS7B01G146600
chr5B
81.046
306
24
11
3128
3399
216839966
216839661
2.660000e-51
213
33
TraesCS7B01G146600
chr1B
93.431
137
9
0
1270
1406
606228522
606228658
1.600000e-48
204
34
TraesCS7B01G146600
chr1B
90.099
101
9
1
112
211
668967776
668967876
2.750000e-26
130
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7B01G146600
chr7B
191726608
191730006
3398
False
2750.5
4998
100.000
1
3399
2
chr7B.!!$F1
3398
1
TraesCS7B01G146600
chr7B
698631303
698631880
577
True
804.0
804
92.055
1006
1574
1
chr7B.!!$R3
568
2
TraesCS7B01G146600
chr7A
222503734
222506421
2687
True
3456.0
3456
89.964
2
2706
1
chr7A.!!$R2
2704
3
TraesCS7B01G146600
chr7D
209823570
209826027
2457
True
3345.0
3345
91.472
270
2706
1
chr7D.!!$R1
2436
4
TraesCS7B01G146600
chr6B
68219376
68219952
576
False
815.0
815
92.401
1006
1574
1
chr6B.!!$F1
568
5
TraesCS7B01G146600
chr4A
661808437
661809014
577
True
782.0
782
91.364
1006
1574
1
chr4A.!!$R1
568
6
TraesCS7B01G146600
chr5A
564681423
564682000
577
True
776.0
776
91.192
1006
1574
1
chr5A.!!$R1
568
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
773
788
0.096454
GCATAACGGACCTTTCGCAC
59.904
55.0
0.0
0.0
0.0
5.34
F
911
938
0.114364
AAAGCCATTCCCCGTCCTTT
59.886
50.0
0.0
0.0
0.0
3.11
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1594
1638
1.102978
ATTTAACTGTCCATGGGCGC
58.897
50.0
12.67
0.0
0.0
6.53
R
2584
2640
1.761449
TTCCAACTGCAAGCTCAACA
58.239
45.0
0.00
0.0
37.6
3.33
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
159
160
4.518249
CTCTTACCCCCTCTTTTCACATC
58.482
47.826
0.00
0.00
0.00
3.06
161
162
0.328258
ACCCCCTCTTTTCACATCGG
59.672
55.000
0.00
0.00
0.00
4.18
164
165
1.407437
CCCCTCTTTTCACATCGGAGG
60.407
57.143
0.00
0.00
42.10
4.30
187
188
6.155393
AGGTCAGAAGGTAAGAGTTAATCTGG
59.845
42.308
0.00
0.00
38.67
3.86
197
198
5.763876
AGAGTTAATCTGGCCACTACTTT
57.236
39.130
0.00
0.00
36.69
2.66
212
214
7.363793
GGCCACTACTTTATCAAATCAATGGTT
60.364
37.037
0.00
0.00
0.00
3.67
237
239
5.355350
AGAGAGACCATGCTAAAATTTTCCG
59.645
40.000
6.72
1.35
0.00
4.30
243
245
8.695456
AGACCATGCTAAAATTTTCCGAATTAT
58.305
29.630
6.72
0.00
0.00
1.28
244
246
8.647143
ACCATGCTAAAATTTTCCGAATTATG
57.353
30.769
6.72
4.48
0.00
1.90
258
260
7.447374
TCCGAATTATGAAGTTTTCACATGT
57.553
32.000
0.00
0.00
43.48
3.21
412
419
8.948853
AAAATGTTCATAGAATGTAACGTGTG
57.051
30.769
0.00
0.00
0.00
3.82
480
488
9.588096
ACACTTAAACTGGGAAGATTAGAAAAT
57.412
29.630
0.00
0.00
0.00
1.82
517
525
8.891720
TGAAAGGAAAAACAAAGATGGAAAATG
58.108
29.630
0.00
0.00
0.00
2.32
526
534
8.750515
AACAAAGATGGAAAATGAAAACCAAT
57.249
26.923
0.00
0.00
36.00
3.16
562
570
8.791327
AATCAGAAAACCAATTGAAAAACAGT
57.209
26.923
7.12
0.00
0.00
3.55
563
571
9.883142
AATCAGAAAACCAATTGAAAAACAGTA
57.117
25.926
7.12
0.00
0.00
2.74
564
572
9.883142
ATCAGAAAACCAATTGAAAAACAGTAA
57.117
25.926
7.12
0.00
0.00
2.24
605
617
3.447229
ACAACAAGGAAACACAGGAAAGG
59.553
43.478
0.00
0.00
0.00
3.11
614
626
5.753438
GGAAACACAGGAAAGGAAAATGAAC
59.247
40.000
0.00
0.00
0.00
3.18
618
630
5.156355
CACAGGAAAGGAAAATGAACGATG
58.844
41.667
0.00
0.00
0.00
3.84
653
665
2.504519
GGAGCTAATTCGGCCGGT
59.495
61.111
27.83
12.19
0.00
5.28
744
758
2.500229
TGTCGCTTAAAAAGACCAGGG
58.500
47.619
0.00
0.00
34.24
4.45
769
784
0.651031
GAGCGCATAACGGACCTTTC
59.349
55.000
11.47
0.00
43.93
2.62
773
788
0.096454
GCATAACGGACCTTTCGCAC
59.904
55.000
0.00
0.00
0.00
5.34
778
793
2.048127
GGACCTTTCGCACGCTCT
60.048
61.111
0.00
0.00
0.00
4.09
779
794
1.668151
GGACCTTTCGCACGCTCTT
60.668
57.895
0.00
0.00
0.00
2.85
806
821
3.573967
TCCATTGCCAAAGGTTTTCTCTC
59.426
43.478
0.00
0.00
0.00
3.20
812
827
0.605589
AAAGGTTTTCTCTCCGCGGG
60.606
55.000
27.83
16.54
0.00
6.13
839
866
0.394899
GCTGGCTCATGGGCTAAACT
60.395
55.000
18.99
0.00
41.48
2.66
908
935
2.067365
ATAAAAGCCATTCCCCGTCC
57.933
50.000
0.00
0.00
0.00
4.79
909
936
0.996583
TAAAAGCCATTCCCCGTCCT
59.003
50.000
0.00
0.00
0.00
3.85
911
938
0.114364
AAAGCCATTCCCCGTCCTTT
59.886
50.000
0.00
0.00
0.00
3.11
1096
1123
0.820891
CCTCCATGGCTGGTATGCAC
60.821
60.000
6.96
0.00
43.61
4.57
1099
1126
1.829533
CATGGCTGGTATGCACCCC
60.830
63.158
0.00
0.00
45.11
4.95
1204
1238
3.871594
GCCACGAACATCAATTAGTAGCT
59.128
43.478
0.00
0.00
0.00
3.32
1225
1259
0.451783
GATTTCGATTTGCGGTGCCT
59.548
50.000
0.00
0.00
41.33
4.75
1243
1277
1.471964
CTAAGATCGTGCTCGCTGTC
58.528
55.000
2.69
2.00
36.96
3.51
1259
1293
0.959553
TGTCCTCTCACGTCTTGGTC
59.040
55.000
0.00
0.00
0.00
4.02
1291
1325
3.575256
TGAACAATTTCCTGATGCTGCTT
59.425
39.130
0.00
0.00
0.00
3.91
1366
1400
1.454201
TAGACGTGAGCTGAGAGGTG
58.546
55.000
0.00
0.00
0.00
4.00
1532
1569
8.319057
AGAGAGTTGTACCATAACATTCCATA
57.681
34.615
0.00
0.00
0.00
2.74
1533
1570
8.424918
AGAGAGTTGTACCATAACATTCCATAG
58.575
37.037
0.00
0.00
0.00
2.23
1534
1571
6.992715
AGAGTTGTACCATAACATTCCATAGC
59.007
38.462
0.00
0.00
0.00
2.97
1594
1638
7.776933
TGTTAGCTCTATGACAATTTAGCTG
57.223
36.000
12.58
0.00
40.35
4.24
1621
1665
5.111293
CCATGGACAGTTAAATGATTTGCC
58.889
41.667
5.56
3.71
0.00
4.52
1735
1779
5.227569
TCTGCTCTTGAATTGTAGGAACA
57.772
39.130
0.00
0.00
0.00
3.18
1787
1831
6.572519
TGAATAAAGCTGCTTTCTTGTTGTT
58.427
32.000
29.06
10.63
35.21
2.83
1835
1879
7.121759
AGTTTGGATATCAGTGATTTGAACCAG
59.878
37.037
11.68
0.00
33.71
4.00
1897
1941
1.427809
CCTCAGATGGCATACCTGGA
58.572
55.000
14.18
2.20
36.63
3.86
1900
1944
3.197333
CCTCAGATGGCATACCTGGATAG
59.803
52.174
14.18
6.43
36.63
2.08
1901
1945
2.568956
TCAGATGGCATACCTGGATAGC
59.431
50.000
14.18
0.15
36.63
2.97
1911
1955
2.781667
ACCTGGATAGCCTTTGATCCT
58.218
47.619
0.00
0.00
41.99
3.24
2332
2387
2.352388
GAGCTCTACTCACTCGTCACT
58.648
52.381
6.43
0.00
45.49
3.41
2400
2455
4.321008
GGTTGTCGATGACACTGAGTAGAA
60.321
45.833
0.00
0.00
42.60
2.10
2541
2597
6.454795
TCTAAATCTTGATGGTTGGTTTTGC
58.545
36.000
0.00
0.00
0.00
3.68
2580
2636
4.986034
CGTTATTGGCGTCAATACAGGATA
59.014
41.667
21.52
3.76
43.28
2.59
2584
2640
2.368548
TGGCGTCAATACAGGATATGCT
59.631
45.455
0.00
0.00
0.00
3.79
2642
2701
6.773200
TGGTAGTGTGATTAATGTTTTCCACA
59.227
34.615
0.00
0.00
40.71
4.17
2684
2753
7.360575
AGGTACATTCTTTTTGTGTCGATAC
57.639
36.000
5.21
5.21
0.00
2.24
2696
2765
4.359706
TGTGTCGATACATAGTGCATGAC
58.640
43.478
11.30
0.00
38.08
3.06
2703
2772
3.541996
ACATAGTGCATGACCGATTGA
57.458
42.857
0.00
0.00
38.10
2.57
3166
3235
1.584495
AAAAAGCCAATCGCGTCCC
59.416
52.632
5.77
0.00
44.76
4.46
3167
3236
1.873270
AAAAAGCCAATCGCGTCCCC
61.873
55.000
5.77
0.00
44.76
4.81
3168
3237
3.561120
AAAGCCAATCGCGTCCCCA
62.561
57.895
5.77
0.00
44.76
4.96
3169
3238
3.561120
AAGCCAATCGCGTCCCCAA
62.561
57.895
5.77
0.00
44.76
4.12
3170
3239
3.059386
GCCAATCGCGTCCCCAAA
61.059
61.111
5.77
0.00
0.00
3.28
3171
3240
3.051392
GCCAATCGCGTCCCCAAAG
62.051
63.158
5.77
0.00
0.00
2.77
3172
3241
2.406616
CCAATCGCGTCCCCAAAGG
61.407
63.158
5.77
0.00
0.00
3.11
3173
3242
2.750237
AATCGCGTCCCCAAAGGC
60.750
61.111
5.77
0.00
34.51
4.35
3174
3243
4.796495
ATCGCGTCCCCAAAGGCC
62.796
66.667
5.77
0.00
34.51
5.19
3177
3246
4.759205
GCGTCCCCAAAGGCCCAT
62.759
66.667
0.00
0.00
34.51
4.00
3178
3247
2.037208
CGTCCCCAAAGGCCCATT
59.963
61.111
0.00
0.00
34.51
3.16
3179
3248
1.609210
CGTCCCCAAAGGCCCATTT
60.609
57.895
0.00
0.00
34.51
2.32
3180
3249
1.191489
CGTCCCCAAAGGCCCATTTT
61.191
55.000
0.00
0.00
34.51
1.82
3181
3250
1.064003
GTCCCCAAAGGCCCATTTTT
58.936
50.000
0.00
0.00
34.51
1.94
3182
3251
1.003118
GTCCCCAAAGGCCCATTTTTC
59.997
52.381
0.00
0.00
34.51
2.29
3183
3252
0.036483
CCCCAAAGGCCCATTTTTCG
60.036
55.000
0.00
0.00
0.00
3.46
3184
3253
0.673333
CCCAAAGGCCCATTTTTCGC
60.673
55.000
0.00
0.00
0.00
4.70
3185
3254
0.673333
CCAAAGGCCCATTTTTCGCC
60.673
55.000
0.00
0.00
43.35
5.54
3188
3257
4.812476
GGCCCATTTTTCGCCGGC
62.812
66.667
19.07
19.07
38.96
6.13
3189
3258
3.758931
GCCCATTTTTCGCCGGCT
61.759
61.111
26.68
0.00
36.65
5.52
3190
3259
2.969827
CCCATTTTTCGCCGGCTT
59.030
55.556
26.68
0.00
0.00
4.35
3191
3260
1.445926
CCCATTTTTCGCCGGCTTG
60.446
57.895
26.68
10.37
0.00
4.01
3192
3261
1.445926
CCATTTTTCGCCGGCTTGG
60.446
57.895
26.68
16.54
42.50
3.61
3193
3262
1.583986
CATTTTTCGCCGGCTTGGA
59.416
52.632
26.68
12.15
42.00
3.53
3194
3263
0.732538
CATTTTTCGCCGGCTTGGAC
60.733
55.000
26.68
0.00
42.00
4.02
3195
3264
1.873270
ATTTTTCGCCGGCTTGGACC
61.873
55.000
26.68
0.00
42.00
4.46
3196
3265
3.776347
TTTTCGCCGGCTTGGACCA
62.776
57.895
26.68
0.66
42.00
4.02
3197
3266
3.776347
TTTCGCCGGCTTGGACCAA
62.776
57.895
26.68
6.76
42.00
3.67
3198
3267
3.776347
TTCGCCGGCTTGGACCAAA
62.776
57.895
26.68
2.72
42.00
3.28
3199
3268
3.291383
CGCCGGCTTGGACCAAAA
61.291
61.111
26.68
0.00
42.00
2.44
3200
3269
2.635443
CGCCGGCTTGGACCAAAAT
61.635
57.895
26.68
0.00
42.00
1.82
3201
3270
1.671166
GCCGGCTTGGACCAAAATT
59.329
52.632
22.15
0.00
42.00
1.82
3202
3271
0.670239
GCCGGCTTGGACCAAAATTG
60.670
55.000
22.15
0.00
42.00
2.32
3203
3272
3.959591
GCCGGCTTGGACCAAAATTGG
62.960
57.143
22.15
10.61
46.10
3.16
3248
3317
3.956317
GTGCCGGGCGAAACGTTT
61.956
61.111
14.57
14.57
0.00
3.60
3249
3318
3.210528
TGCCGGGCGAAACGTTTT
61.211
55.556
15.89
0.00
0.00
2.43
3250
3319
2.026445
GCCGGGCGAAACGTTTTT
59.974
55.556
15.89
0.00
0.00
1.94
3251
3320
2.297195
GCCGGGCGAAACGTTTTTG
61.297
57.895
15.89
11.99
0.00
2.44
3252
3321
1.659026
CCGGGCGAAACGTTTTTGG
60.659
57.895
15.89
8.94
0.00
3.28
3253
3322
2.297195
CGGGCGAAACGTTTTTGGC
61.297
57.895
23.64
23.64
43.65
4.52
3254
3323
2.297195
GGGCGAAACGTTTTTGGCG
61.297
57.895
24.24
19.53
44.90
5.69
3255
3324
2.537578
GCGAAACGTTTTTGGCGC
59.462
55.556
23.11
23.11
36.81
6.53
3256
3325
2.827152
CGAAACGTTTTTGGCGCG
59.173
55.556
15.89
9.00
0.00
6.86
3257
3326
1.651730
CGAAACGTTTTTGGCGCGA
60.652
52.632
15.89
0.00
0.00
5.87
3258
3327
1.584920
CGAAACGTTTTTGGCGCGAG
61.585
55.000
15.89
0.00
0.00
5.03
3259
3328
0.316360
GAAACGTTTTTGGCGCGAGA
60.316
50.000
15.89
0.00
0.00
4.04
3260
3329
0.099082
AAACGTTTTTGGCGCGAGAA
59.901
45.000
12.10
0.00
0.00
2.87
3261
3330
0.590481
AACGTTTTTGGCGCGAGAAC
60.590
50.000
12.10
6.01
0.00
3.01
3262
3331
1.724581
CGTTTTTGGCGCGAGAACC
60.725
57.895
12.10
0.65
0.00
3.62
3263
3332
1.724581
GTTTTTGGCGCGAGAACCG
60.725
57.895
12.10
0.00
42.21
4.44
3264
3333
2.181521
TTTTTGGCGCGAGAACCGT
61.182
52.632
12.10
0.00
41.15
4.83
3265
3334
2.108344
TTTTTGGCGCGAGAACCGTC
62.108
55.000
12.10
0.00
41.15
4.79
3273
3342
4.144703
GAGAACCGTCGGGCCCTC
62.145
72.222
22.43
9.56
36.48
4.30
3279
3348
4.452733
CGTCGGGCCCTCCTTGAC
62.453
72.222
22.43
18.01
35.67
3.18
3280
3349
3.319198
GTCGGGCCCTCCTTGACA
61.319
66.667
22.43
0.00
37.53
3.58
3281
3350
3.003173
TCGGGCCCTCCTTGACAG
61.003
66.667
22.43
0.00
0.00
3.51
3282
3351
4.785453
CGGGCCCTCCTTGACAGC
62.785
72.222
22.43
0.00
0.00
4.40
3283
3352
4.785453
GGGCCCTCCTTGACAGCG
62.785
72.222
17.04
0.00
0.00
5.18
3284
3353
3.706373
GGCCCTCCTTGACAGCGA
61.706
66.667
0.00
0.00
0.00
4.93
3285
3354
2.435059
GCCCTCCTTGACAGCGAC
60.435
66.667
0.00
0.00
0.00
5.19
3286
3355
2.948720
GCCCTCCTTGACAGCGACT
61.949
63.158
0.00
0.00
0.00
4.18
3287
3356
1.216710
CCCTCCTTGACAGCGACTC
59.783
63.158
0.00
0.00
0.00
3.36
3288
3357
1.153939
CCTCCTTGACAGCGACTCG
60.154
63.158
0.00
0.00
0.00
4.18
3289
3358
1.153939
CTCCTTGACAGCGACTCGG
60.154
63.158
0.00
0.00
0.00
4.63
3290
3359
2.811317
CCTTGACAGCGACTCGGC
60.811
66.667
0.00
0.00
0.00
5.54
3291
3360
2.259818
CTTGACAGCGACTCGGCT
59.740
61.111
0.00
0.00
46.13
5.52
3292
3361
1.803519
CTTGACAGCGACTCGGCTC
60.804
63.158
0.00
0.00
42.53
4.70
3293
3362
2.206515
CTTGACAGCGACTCGGCTCT
62.207
60.000
0.00
0.00
42.53
4.09
3294
3363
1.806461
TTGACAGCGACTCGGCTCTT
61.806
55.000
0.00
0.00
42.53
2.85
3295
3364
1.515304
GACAGCGACTCGGCTCTTC
60.515
63.158
0.00
0.00
42.53
2.87
3296
3365
1.928706
GACAGCGACTCGGCTCTTCT
61.929
60.000
0.00
0.00
42.53
2.85
3297
3366
1.226547
CAGCGACTCGGCTCTTCTC
60.227
63.158
0.00
0.00
42.53
2.87
3298
3367
2.277628
GCGACTCGGCTCTTCTCG
60.278
66.667
0.00
0.00
0.00
4.04
3299
3368
2.277628
CGACTCGGCTCTTCTCGC
60.278
66.667
0.00
0.00
0.00
5.03
3300
3369
2.103340
GACTCGGCTCTTCTCGCC
59.897
66.667
0.00
0.00
44.11
5.54
3305
3374
2.888051
GGCTCTTCTCGCCGCTTC
60.888
66.667
0.00
0.00
37.87
3.86
3306
3375
3.251043
GCTCTTCTCGCCGCTTCG
61.251
66.667
0.00
0.00
0.00
3.79
3307
3376
2.179517
CTCTTCTCGCCGCTTCGT
59.820
61.111
0.00
0.00
0.00
3.85
3308
3377
1.870016
CTCTTCTCGCCGCTTCGTC
60.870
63.158
0.00
0.00
0.00
4.20
3309
3378
3.241059
CTTCTCGCCGCTTCGTCG
61.241
66.667
0.00
0.00
0.00
5.12
3310
3379
3.948086
CTTCTCGCCGCTTCGTCGT
62.948
63.158
0.00
0.00
0.00
4.34
3311
3380
3.940975
TTCTCGCCGCTTCGTCGTC
62.941
63.158
0.00
0.00
0.00
4.20
3315
3384
4.415332
GCCGCTTCGTCGTCCTCA
62.415
66.667
0.00
0.00
0.00
3.86
3316
3385
2.490217
CCGCTTCGTCGTCCTCAT
59.510
61.111
0.00
0.00
0.00
2.90
3317
3386
1.586564
CCGCTTCGTCGTCCTCATC
60.587
63.158
0.00
0.00
0.00
2.92
3318
3387
1.934956
CGCTTCGTCGTCCTCATCG
60.935
63.158
0.00
0.00
0.00
3.84
3319
3388
2.224885
GCTTCGTCGTCCTCATCGC
61.225
63.158
0.00
0.00
0.00
4.58
3320
3389
1.586564
CTTCGTCGTCCTCATCGCC
60.587
63.158
0.00
0.00
0.00
5.54
3321
3390
1.994507
CTTCGTCGTCCTCATCGCCT
61.995
60.000
0.00
0.00
0.00
5.52
3322
3391
1.592400
TTCGTCGTCCTCATCGCCTT
61.592
55.000
0.00
0.00
0.00
4.35
3323
3392
1.874019
CGTCGTCCTCATCGCCTTG
60.874
63.158
0.00
0.00
0.00
3.61
3324
3393
1.519455
GTCGTCCTCATCGCCTTGG
60.519
63.158
0.00
0.00
0.00
3.61
3325
3394
1.982395
TCGTCCTCATCGCCTTGGT
60.982
57.895
0.00
0.00
0.00
3.67
3326
3395
1.079127
CGTCCTCATCGCCTTGGTT
60.079
57.895
0.00
0.00
0.00
3.67
3327
3396
1.084370
CGTCCTCATCGCCTTGGTTC
61.084
60.000
0.00
0.00
0.00
3.62
3328
3397
0.744771
GTCCTCATCGCCTTGGTTCC
60.745
60.000
0.00
0.00
0.00
3.62
3329
3398
0.909610
TCCTCATCGCCTTGGTTCCT
60.910
55.000
0.00
0.00
0.00
3.36
3330
3399
0.745845
CCTCATCGCCTTGGTTCCTG
60.746
60.000
0.00
0.00
0.00
3.86
3331
3400
1.372087
CTCATCGCCTTGGTTCCTGC
61.372
60.000
0.00
0.00
0.00
4.85
3333
3402
3.976701
ATCGCCTTGGTTCCTGCGG
62.977
63.158
15.98
0.00
46.51
5.69
3336
3405
4.697756
CCTTGGTTCCTGCGGCGA
62.698
66.667
12.98
0.00
0.00
5.54
3337
3406
2.668212
CTTGGTTCCTGCGGCGAA
60.668
61.111
12.98
0.00
0.00
4.70
3338
3407
2.033448
TTGGTTCCTGCGGCGAAT
59.967
55.556
12.98
0.00
0.00
3.34
3339
3408
1.982073
CTTGGTTCCTGCGGCGAATC
61.982
60.000
12.98
0.00
0.00
2.52
3340
3409
2.435938
GGTTCCTGCGGCGAATCA
60.436
61.111
12.98
0.00
0.00
2.57
3341
3410
2.038269
GGTTCCTGCGGCGAATCAA
61.038
57.895
12.98
0.00
0.00
2.57
3342
3411
1.376609
GGTTCCTGCGGCGAATCAAT
61.377
55.000
12.98
0.00
0.00
2.57
3343
3412
0.248215
GTTCCTGCGGCGAATCAATG
60.248
55.000
12.98
0.00
0.00
2.82
3344
3413
1.992233
TTCCTGCGGCGAATCAATGC
61.992
55.000
12.98
0.00
0.00
3.56
3351
3420
3.727419
GCGAATCAATGCCAAAGCT
57.273
47.368
0.00
0.00
40.80
3.74
3352
3421
1.274596
GCGAATCAATGCCAAAGCTG
58.725
50.000
0.00
0.00
40.80
4.24
3353
3422
1.274596
CGAATCAATGCCAAAGCTGC
58.725
50.000
0.00
0.00
40.80
5.25
3354
3423
1.648504
GAATCAATGCCAAAGCTGCC
58.351
50.000
0.00
0.00
40.80
4.85
3355
3424
0.108520
AATCAATGCCAAAGCTGCCG
60.109
50.000
0.00
0.00
40.80
5.69
3356
3425
2.567564
ATCAATGCCAAAGCTGCCGC
62.568
55.000
0.00
0.00
40.80
6.53
3357
3426
4.424566
AATGCCAAAGCTGCCGCG
62.425
61.111
0.00
0.00
42.32
6.46
3372
3441
4.500116
GCGCCGGTCAGTCTCCTC
62.500
72.222
1.90
0.00
0.00
3.71
3373
3442
3.827898
CGCCGGTCAGTCTCCTCC
61.828
72.222
1.90
0.00
0.00
4.30
3374
3443
2.680352
GCCGGTCAGTCTCCTCCA
60.680
66.667
1.90
0.00
0.00
3.86
3375
3444
2.060980
GCCGGTCAGTCTCCTCCAT
61.061
63.158
1.90
0.00
0.00
3.41
3376
3445
1.617947
GCCGGTCAGTCTCCTCCATT
61.618
60.000
1.90
0.00
0.00
3.16
3377
3446
0.176680
CCGGTCAGTCTCCTCCATTG
59.823
60.000
0.00
0.00
0.00
2.82
3378
3447
1.186200
CGGTCAGTCTCCTCCATTGA
58.814
55.000
0.00
0.00
0.00
2.57
3379
3448
1.759445
CGGTCAGTCTCCTCCATTGAT
59.241
52.381
0.00
0.00
0.00
2.57
3380
3449
2.482664
CGGTCAGTCTCCTCCATTGATG
60.483
54.545
0.00
0.00
0.00
3.07
3381
3450
2.559440
GTCAGTCTCCTCCATTGATGC
58.441
52.381
0.00
0.00
0.00
3.91
3382
3451
1.487976
TCAGTCTCCTCCATTGATGCC
59.512
52.381
0.00
0.00
0.00
4.40
3383
3452
1.489649
CAGTCTCCTCCATTGATGCCT
59.510
52.381
0.00
0.00
0.00
4.75
3384
3453
1.767681
AGTCTCCTCCATTGATGCCTC
59.232
52.381
0.00
0.00
0.00
4.70
3385
3454
1.487976
GTCTCCTCCATTGATGCCTCA
59.512
52.381
0.00
0.00
0.00
3.86
3386
3455
1.487976
TCTCCTCCATTGATGCCTCAC
59.512
52.381
0.00
0.00
0.00
3.51
3387
3456
0.178767
TCCTCCATTGATGCCTCACG
59.821
55.000
0.00
0.00
0.00
4.35
3388
3457
0.816825
CCTCCATTGATGCCTCACGG
60.817
60.000
0.00
0.00
0.00
4.94
3389
3458
0.178767
CTCCATTGATGCCTCACGGA
59.821
55.000
8.49
8.49
0.00
4.69
3390
3459
0.107703
TCCATTGATGCCTCACGGAC
60.108
55.000
5.51
0.00
0.00
4.79
3391
3460
1.431488
CCATTGATGCCTCACGGACG
61.431
60.000
1.52
0.00
0.00
4.79
3392
3461
1.153369
ATTGATGCCTCACGGACGG
60.153
57.895
0.00
0.00
0.00
4.79
3393
3462
3.950794
TTGATGCCTCACGGACGGC
62.951
63.158
4.41
4.41
46.46
5.68
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
113
114
9.343539
GAGGGAGCATGTTAAAATTACTCTTAT
57.656
33.333
0.00
0.00
0.00
1.73
114
115
8.548877
AGAGGGAGCATGTTAAAATTACTCTTA
58.451
33.333
0.00
0.00
0.00
2.10
159
160
2.448453
ACTCTTACCTTCTGACCTCCG
58.552
52.381
0.00
0.00
0.00
4.63
161
162
7.262048
CAGATTAACTCTTACCTTCTGACCTC
58.738
42.308
0.00
0.00
32.77
3.85
164
165
5.813157
GCCAGATTAACTCTTACCTTCTGAC
59.187
44.000
0.00
0.00
32.77
3.51
187
188
7.100458
ACCATTGATTTGATAAAGTAGTGGC
57.900
36.000
0.00
0.00
0.00
5.01
197
198
8.089625
TGGTCTCTCTAACCATTGATTTGATA
57.910
34.615
0.00
0.00
41.84
2.15
212
214
6.538742
CGGAAAATTTTAGCATGGTCTCTCTA
59.461
38.462
0.00
0.00
0.00
2.43
448
456
8.528044
AATCTTCCCAGTTTAAGTGTACAAAA
57.472
30.769
0.00
0.00
0.00
2.44
504
512
8.977267
TCAATTGGTTTTCATTTTCCATCTTT
57.023
26.923
5.42
0.00
0.00
2.52
539
547
9.883142
ATTACTGTTTTTCAATTGGTTTTCTGA
57.117
25.926
5.42
0.00
0.00
3.27
600
612
6.923508
AGGTTTTCATCGTTCATTTTCCTTTC
59.076
34.615
0.00
0.00
0.00
2.62
605
617
6.447162
AGGAAGGTTTTCATCGTTCATTTTC
58.553
36.000
0.00
0.00
34.90
2.29
614
626
4.379082
CCGGTTTTAGGAAGGTTTTCATCG
60.379
45.833
0.00
0.00
34.90
3.84
618
630
3.057736
GCTCCGGTTTTAGGAAGGTTTTC
60.058
47.826
0.00
0.00
37.32
2.29
744
758
2.703409
CGTTATGCGCTCACTGCC
59.297
61.111
9.73
0.00
38.78
4.85
769
784
1.016130
ATGGACTTGAAGAGCGTGCG
61.016
55.000
0.00
0.00
0.00
5.34
773
788
0.449388
GGCAATGGACTTGAAGAGCG
59.551
55.000
0.00
0.00
36.97
5.03
778
793
2.676748
ACCTTTGGCAATGGACTTGAA
58.323
42.857
31.86
0.86
36.97
2.69
779
794
2.380064
ACCTTTGGCAATGGACTTGA
57.620
45.000
31.86
1.59
36.97
3.02
816
831
0.039472
TAGCCCATGAGCCAGCAAAA
59.961
50.000
0.00
0.00
0.00
2.44
825
852
1.673168
GCCTCAGTTTAGCCCATGAG
58.327
55.000
0.00
0.00
39.10
2.90
839
866
1.141657
GCTGATAAGTCATGGGCCTCA
59.858
52.381
4.53
0.00
32.98
3.86
876
903
2.349532
GGCTTTTATATGCTCGCGTTCC
60.350
50.000
5.77
0.00
0.00
3.62
1099
1126
4.176752
GAAGTAGCAGGGCCGGGG
62.177
72.222
2.18
0.00
0.00
5.73
1103
1130
1.153269
GAGCAGAAGTAGCAGGGCC
60.153
63.158
0.00
0.00
0.00
5.80
1204
1238
1.668751
GGCACCGCAAATCGAAATCTA
59.331
47.619
0.00
0.00
41.67
1.98
1225
1259
0.100682
GGACAGCGAGCACGATCTTA
59.899
55.000
8.01
0.00
42.66
2.10
1243
1277
1.213013
CGGACCAAGACGTGAGAGG
59.787
63.158
0.00
0.00
0.00
3.69
1259
1293
7.320443
TCAGGAAATTGTTCAATCTATTCGG
57.680
36.000
0.00
0.00
35.25
4.30
1318
1352
5.663106
AGATTAGAGAAGTATGACAGGGCAA
59.337
40.000
0.00
0.00
0.00
4.52
1366
1400
8.597227
CGTGATAGTACAGCTCTATGAGTATAC
58.403
40.741
0.00
0.00
31.39
1.47
1532
1569
2.867109
ACAACTAGTTGCATGAGGCT
57.133
45.000
30.97
10.02
44.03
4.58
1533
1570
4.035675
GGATTACAACTAGTTGCATGAGGC
59.964
45.833
30.97
15.74
44.03
4.70
1534
1571
5.185454
TGGATTACAACTAGTTGCATGAGG
58.815
41.667
30.97
10.03
44.03
3.86
1594
1638
1.102978
ATTTAACTGTCCATGGGCGC
58.897
50.000
12.67
0.00
0.00
6.53
1735
1779
5.065218
CCTGAATGAACTACGCTTAAGCATT
59.935
40.000
26.29
15.89
42.21
3.56
1736
1780
4.572389
CCTGAATGAACTACGCTTAAGCAT
59.428
41.667
26.29
15.10
42.21
3.79
1744
1788
3.521560
TCATGACCTGAATGAACTACGC
58.478
45.455
0.00
0.00
31.17
4.42
1787
1831
5.732661
ACTAGCCCTAATTTAACCAACCCTA
59.267
40.000
0.00
0.00
0.00
3.53
1835
1879
8.547967
TCAAAGTAGTTTCCATGATAAGTGAC
57.452
34.615
0.00
0.00
0.00
3.67
1897
1941
5.013599
GGGATTGAGTAGGATCAAAGGCTAT
59.986
44.000
0.00
0.00
42.21
2.97
1900
1944
3.481453
GGGATTGAGTAGGATCAAAGGC
58.519
50.000
0.00
0.00
42.21
4.35
1901
1945
3.388024
TCGGGATTGAGTAGGATCAAAGG
59.612
47.826
0.00
0.00
42.21
3.11
1911
1955
5.741011
AGCATTTTAGTTCGGGATTGAGTA
58.259
37.500
0.00
0.00
0.00
2.59
2380
2435
4.944317
AGATTCTACTCAGTGTCATCGACA
59.056
41.667
0.00
0.00
40.50
4.35
2469
2525
7.445402
CGATATTCCATACTCCAAAACTTCCAT
59.555
37.037
0.00
0.00
0.00
3.41
2531
2587
3.320826
ACAGTATGAAGGGCAAAACCAAC
59.679
43.478
0.00
0.00
38.50
3.77
2541
2597
2.386661
AACGAGCACAGTATGAAGGG
57.613
50.000
0.00
0.00
39.69
3.95
2584
2640
1.761449
TTCCAACTGCAAGCTCAACA
58.239
45.000
0.00
0.00
37.60
3.33
2642
2701
2.158519
ACCTTCGGACCTTCCAATTTGT
60.159
45.455
0.00
0.00
35.91
2.83
2643
2702
2.514803
ACCTTCGGACCTTCCAATTTG
58.485
47.619
0.00
0.00
35.91
2.32
2668
2736
5.929415
TGCACTATGTATCGACACAAAAAGA
59.071
36.000
0.00
0.00
38.76
2.52
2684
2753
4.400036
CATCAATCGGTCATGCACTATG
57.600
45.455
0.00
0.00
38.17
2.23
3148
3217
1.584495
GGGACGCGATTGGCTTTTT
59.416
52.632
15.93
0.00
40.44
1.94
3149
3218
2.340328
GGGGACGCGATTGGCTTTT
61.340
57.895
15.93
0.00
40.44
2.27
3150
3219
2.750237
GGGGACGCGATTGGCTTT
60.750
61.111
15.93
0.00
40.44
3.51
3151
3220
3.561120
TTGGGGACGCGATTGGCTT
62.561
57.895
15.93
0.00
40.44
4.35
3152
3221
3.561120
TTTGGGGACGCGATTGGCT
62.561
57.895
15.93
0.00
40.44
4.75
3153
3222
3.051392
CTTTGGGGACGCGATTGGC
62.051
63.158
15.93
0.00
38.69
4.52
3154
3223
2.406616
CCTTTGGGGACGCGATTGG
61.407
63.158
15.93
0.00
37.23
3.16
3155
3224
3.051392
GCCTTTGGGGACGCGATTG
62.051
63.158
15.93
0.00
37.23
2.67
3156
3225
2.750237
GCCTTTGGGGACGCGATT
60.750
61.111
15.93
0.00
37.23
3.34
3157
3226
4.796495
GGCCTTTGGGGACGCGAT
62.796
66.667
15.93
0.00
37.23
4.58
3160
3229
4.759205
ATGGGCCTTTGGGGACGC
62.759
66.667
4.53
0.00
46.52
5.19
3161
3230
1.191489
AAAATGGGCCTTTGGGGACG
61.191
55.000
4.53
0.00
46.52
4.79
3162
3231
1.003118
GAAAAATGGGCCTTTGGGGAC
59.997
52.381
4.53
0.00
44.23
4.46
3163
3232
1.357137
GAAAAATGGGCCTTTGGGGA
58.643
50.000
4.53
0.00
37.23
4.81
3164
3233
0.036483
CGAAAAATGGGCCTTTGGGG
60.036
55.000
4.53
0.00
38.36
4.96
3165
3234
0.673333
GCGAAAAATGGGCCTTTGGG
60.673
55.000
4.53
0.00
0.00
4.12
3166
3235
0.673333
GGCGAAAAATGGGCCTTTGG
60.673
55.000
4.53
0.00
43.52
3.28
3167
3236
1.013524
CGGCGAAAAATGGGCCTTTG
61.014
55.000
0.00
0.00
44.68
2.77
3168
3237
1.291906
CGGCGAAAAATGGGCCTTT
59.708
52.632
0.00
0.76
44.68
3.11
3169
3238
2.645192
CCGGCGAAAAATGGGCCTT
61.645
57.895
9.30
0.00
44.68
4.35
3170
3239
3.068064
CCGGCGAAAAATGGGCCT
61.068
61.111
9.30
0.00
44.68
5.19
3171
3240
4.812476
GCCGGCGAAAAATGGGCC
62.812
66.667
12.58
0.00
43.42
5.80
3172
3241
3.295304
AAGCCGGCGAAAAATGGGC
62.295
57.895
23.20
0.00
44.07
5.36
3173
3242
1.445926
CAAGCCGGCGAAAAATGGG
60.446
57.895
23.20
0.00
0.00
4.00
3174
3243
1.445926
CCAAGCCGGCGAAAAATGG
60.446
57.895
23.20
18.72
0.00
3.16
3175
3244
0.732538
GTCCAAGCCGGCGAAAAATG
60.733
55.000
23.20
13.84
33.14
2.32
3176
3245
1.584495
GTCCAAGCCGGCGAAAAAT
59.416
52.632
23.20
0.00
33.14
1.82
3177
3246
2.557372
GGTCCAAGCCGGCGAAAAA
61.557
57.895
23.20
3.88
33.14
1.94
3178
3247
2.981350
GGTCCAAGCCGGCGAAAA
60.981
61.111
23.20
5.56
33.14
2.29
3179
3248
3.776347
TTGGTCCAAGCCGGCGAAA
62.776
57.895
23.20
5.13
33.14
3.46
3180
3249
3.776347
TTTGGTCCAAGCCGGCGAA
62.776
57.895
23.20
4.72
33.14
4.70
3181
3250
3.776347
TTTTGGTCCAAGCCGGCGA
62.776
57.895
23.20
10.01
33.14
5.54
3182
3251
2.153547
AATTTTGGTCCAAGCCGGCG
62.154
55.000
23.20
7.72
33.14
6.46
3183
3252
0.670239
CAATTTTGGTCCAAGCCGGC
60.670
55.000
21.89
21.89
33.14
6.13
3184
3253
0.037419
CCAATTTTGGTCCAAGCCGG
60.037
55.000
4.09
0.00
43.43
6.13
3185
3254
3.512978
CCAATTTTGGTCCAAGCCG
57.487
52.632
4.09
0.00
43.43
5.52
3231
3300
2.940250
AAAAACGTTTCGCCCGGCAC
62.940
55.000
15.01
0.00
0.00
5.01
3232
3301
2.772691
AAAAACGTTTCGCCCGGCA
61.773
52.632
15.01
0.00
0.00
5.69
3233
3302
2.026445
AAAAACGTTTCGCCCGGC
59.974
55.556
15.01
0.00
0.00
6.13
3234
3303
1.659026
CCAAAAACGTTTCGCCCGG
60.659
57.895
15.01
6.85
0.00
5.73
3235
3304
2.297195
GCCAAAAACGTTTCGCCCG
61.297
57.895
15.01
1.90
0.00
6.13
3236
3305
2.297195
CGCCAAAAACGTTTCGCCC
61.297
57.895
15.01
3.07
27.90
6.13
3237
3306
2.923177
GCGCCAAAAACGTTTCGCC
61.923
57.895
25.54
13.13
35.20
5.54
3238
3307
2.537578
GCGCCAAAAACGTTTCGC
59.462
55.556
23.11
23.11
34.23
4.70
3239
3308
1.584920
CTCGCGCCAAAAACGTTTCG
61.585
55.000
15.01
14.18
0.00
3.46
3240
3309
0.316360
TCTCGCGCCAAAAACGTTTC
60.316
50.000
15.01
0.35
0.00
2.78
3241
3310
0.099082
TTCTCGCGCCAAAAACGTTT
59.901
45.000
7.96
7.96
0.00
3.60
3242
3311
0.590481
GTTCTCGCGCCAAAAACGTT
60.590
50.000
0.00
0.00
0.00
3.99
3243
3312
1.010462
GTTCTCGCGCCAAAAACGT
60.010
52.632
0.00
0.00
0.00
3.99
3244
3313
1.724581
GGTTCTCGCGCCAAAAACG
60.725
57.895
0.00
0.00
0.00
3.60
3245
3314
1.724581
CGGTTCTCGCGCCAAAAAC
60.725
57.895
0.00
1.17
0.00
2.43
3246
3315
2.108344
GACGGTTCTCGCGCCAAAAA
62.108
55.000
0.00
0.00
43.89
1.94
3247
3316
2.589442
ACGGTTCTCGCGCCAAAA
60.589
55.556
0.00
0.00
43.89
2.44
3248
3317
3.039588
GACGGTTCTCGCGCCAAA
61.040
61.111
0.00
0.00
43.89
3.28
3256
3325
4.144703
GAGGGCCCGACGGTTCTC
62.145
72.222
18.44
12.14
0.00
2.87
3262
3331
4.452733
GTCAAGGAGGGCCCGACG
62.453
72.222
18.44
4.63
40.87
5.12
3263
3332
3.316573
CTGTCAAGGAGGGCCCGAC
62.317
68.421
18.44
17.76
40.87
4.79
3264
3333
3.003173
CTGTCAAGGAGGGCCCGA
61.003
66.667
18.44
3.69
40.87
5.14
3265
3334
4.785453
GCTGTCAAGGAGGGCCCG
62.785
72.222
18.44
0.58
40.87
6.13
3266
3335
4.785453
CGCTGTCAAGGAGGGCCC
62.785
72.222
16.46
16.46
33.31
5.80
3267
3336
3.706373
TCGCTGTCAAGGAGGGCC
61.706
66.667
0.00
0.00
0.00
5.80
3268
3337
2.435059
GTCGCTGTCAAGGAGGGC
60.435
66.667
0.00
0.00
0.00
5.19
3269
3338
1.216710
GAGTCGCTGTCAAGGAGGG
59.783
63.158
0.00
0.00
0.00
4.30
3270
3339
1.153939
CGAGTCGCTGTCAAGGAGG
60.154
63.158
0.00
0.00
0.00
4.30
3271
3340
1.153939
CCGAGTCGCTGTCAAGGAG
60.154
63.158
7.12
0.00
0.00
3.69
3272
3341
2.962569
CCGAGTCGCTGTCAAGGA
59.037
61.111
7.12
0.00
0.00
3.36
3273
3342
2.811317
GCCGAGTCGCTGTCAAGG
60.811
66.667
7.12
0.00
0.00
3.61
3274
3343
1.803519
GAGCCGAGTCGCTGTCAAG
60.804
63.158
7.12
0.00
39.87
3.02
3275
3344
1.806461
AAGAGCCGAGTCGCTGTCAA
61.806
55.000
7.12
0.00
39.87
3.18
3276
3345
2.201436
GAAGAGCCGAGTCGCTGTCA
62.201
60.000
7.12
0.00
39.87
3.58
3277
3346
1.515304
GAAGAGCCGAGTCGCTGTC
60.515
63.158
7.12
2.96
39.87
3.51
3278
3347
1.928706
GAGAAGAGCCGAGTCGCTGT
61.929
60.000
7.12
3.90
39.87
4.40
3279
3348
1.226547
GAGAAGAGCCGAGTCGCTG
60.227
63.158
7.12
0.00
39.87
5.18
3280
3349
2.756025
CGAGAAGAGCCGAGTCGCT
61.756
63.158
7.12
8.14
43.42
4.93
3281
3350
2.277628
CGAGAAGAGCCGAGTCGC
60.278
66.667
7.12
2.73
0.00
5.19
3282
3351
2.277628
GCGAGAAGAGCCGAGTCG
60.278
66.667
5.29
5.29
0.00
4.18
3283
3352
2.103340
GGCGAGAAGAGCCGAGTC
59.897
66.667
0.00
0.00
45.58
3.36
3289
3358
3.251043
CGAAGCGGCGAGAAGAGC
61.251
66.667
12.98
0.00
0.00
4.09
3290
3359
1.870016
GACGAAGCGGCGAGAAGAG
60.870
63.158
12.98
0.00
34.83
2.85
3291
3360
2.178521
GACGAAGCGGCGAGAAGA
59.821
61.111
12.98
0.00
34.83
2.87
3298
3367
3.701604
ATGAGGACGACGAAGCGGC
62.702
63.158
0.00
0.00
38.96
6.53
3299
3368
1.586564
GATGAGGACGACGAAGCGG
60.587
63.158
0.00
0.00
35.12
5.52
3300
3369
1.934956
CGATGAGGACGACGAAGCG
60.935
63.158
0.00
0.00
37.29
4.68
3301
3370
2.224885
GCGATGAGGACGACGAAGC
61.225
63.158
0.00
0.00
0.00
3.86
3302
3371
1.586564
GGCGATGAGGACGACGAAG
60.587
63.158
0.00
0.00
0.00
3.79
3303
3372
1.592400
AAGGCGATGAGGACGACGAA
61.592
55.000
0.00
0.00
44.04
3.85
3304
3373
2.044555
AAGGCGATGAGGACGACGA
61.045
57.895
0.00
0.00
44.04
4.20
3305
3374
1.874019
CAAGGCGATGAGGACGACG
60.874
63.158
0.00
0.00
44.04
5.12
3306
3375
1.519455
CCAAGGCGATGAGGACGAC
60.519
63.158
0.00
0.00
39.24
4.34
3307
3376
1.541310
AACCAAGGCGATGAGGACGA
61.541
55.000
0.00
0.00
0.00
4.20
3308
3377
1.079127
AACCAAGGCGATGAGGACG
60.079
57.895
0.00
0.00
0.00
4.79
3309
3378
0.744771
GGAACCAAGGCGATGAGGAC
60.745
60.000
0.00
0.00
0.00
3.85
3310
3379
0.909610
AGGAACCAAGGCGATGAGGA
60.910
55.000
0.00
0.00
0.00
3.71
3311
3380
0.745845
CAGGAACCAAGGCGATGAGG
60.746
60.000
0.00
0.00
0.00
3.86
3312
3381
1.372087
GCAGGAACCAAGGCGATGAG
61.372
60.000
0.00
0.00
0.00
2.90
3313
3382
1.377202
GCAGGAACCAAGGCGATGA
60.377
57.895
0.00
0.00
0.00
2.92
3314
3383
3.190878
GCAGGAACCAAGGCGATG
58.809
61.111
0.00
0.00
0.00
3.84
3328
3397
2.025156
GGCATTGATTCGCCGCAG
59.975
61.111
0.00
0.00
38.82
5.18
3333
3402
1.274596
CAGCTTTGGCATTGATTCGC
58.725
50.000
0.00
0.00
41.70
4.70
3334
3403
1.274596
GCAGCTTTGGCATTGATTCG
58.725
50.000
0.00
0.00
41.70
3.34
3335
3404
1.648504
GGCAGCTTTGGCATTGATTC
58.351
50.000
0.00
0.00
41.70
2.52
3336
3405
0.108520
CGGCAGCTTTGGCATTGATT
60.109
50.000
0.46
0.00
41.70
2.57
3337
3406
1.514087
CGGCAGCTTTGGCATTGAT
59.486
52.632
0.46
0.00
41.70
2.57
3338
3407
2.964174
CGGCAGCTTTGGCATTGA
59.036
55.556
0.46
0.00
41.70
2.57
3339
3408
2.812178
GCGGCAGCTTTGGCATTG
60.812
61.111
0.00
0.00
41.70
2.82
3340
3409
4.424566
CGCGGCAGCTTTGGCATT
62.425
61.111
7.38
0.00
42.32
3.56
3355
3424
4.500116
GAGGAGACTGACCGGCGC
62.500
72.222
0.00
0.00
44.43
6.53
3356
3425
3.827898
GGAGGAGACTGACCGGCG
61.828
72.222
0.00
0.00
44.43
6.46
3357
3426
1.617947
AATGGAGGAGACTGACCGGC
61.618
60.000
0.00
0.00
44.43
6.13
3358
3427
0.176680
CAATGGAGGAGACTGACCGG
59.823
60.000
0.00
0.00
44.43
5.28
3359
3428
1.186200
TCAATGGAGGAGACTGACCG
58.814
55.000
0.00
0.00
44.43
4.79
3360
3429
2.744494
GCATCAATGGAGGAGACTGACC
60.744
54.545
0.00
0.00
44.43
4.02
3361
3430
2.559440
GCATCAATGGAGGAGACTGAC
58.441
52.381
0.00
0.00
44.43
3.51
3362
3431
1.487976
GGCATCAATGGAGGAGACTGA
59.512
52.381
0.00
0.00
44.43
3.41
3363
3432
1.489649
AGGCATCAATGGAGGAGACTG
59.510
52.381
0.00
0.00
44.43
3.51
3364
3433
2.895723
TGAGGCATCAATGGAGGAGACT
60.896
50.000
0.00
0.00
36.19
3.24
3365
3434
1.487976
TGAGGCATCAATGGAGGAGAC
59.512
52.381
0.00
0.00
30.61
3.36
3366
3435
1.487976
GTGAGGCATCAATGGAGGAGA
59.512
52.381
0.92
0.00
37.14
3.71
3367
3436
1.809271
CGTGAGGCATCAATGGAGGAG
60.809
57.143
0.92
0.00
37.14
3.69
3368
3437
0.178767
CGTGAGGCATCAATGGAGGA
59.821
55.000
0.92
0.00
37.14
3.71
3369
3438
2.699073
CGTGAGGCATCAATGGAGG
58.301
57.895
0.92
0.00
37.14
4.30
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.