Multiple sequence alignment - TraesCS7B01G146500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G146500 chr7B 100.000 2674 0 0 614 3287 191520692 191523365 0.000000e+00 4939.0
1 TraesCS7B01G146500 chr7B 100.000 405 0 0 1 405 191520079 191520483 0.000000e+00 749.0
2 TraesCS7B01G146500 chr7A 92.336 2466 136 25 614 3035 222639705 222637249 0.000000e+00 3458.0
3 TraesCS7B01G146500 chr7A 92.263 685 42 3 1876 2552 619563342 619564023 0.000000e+00 961.0
4 TraesCS7B01G146500 chr7A 91.559 699 48 3 1862 2552 169733865 169733170 0.000000e+00 953.0
5 TraesCS7B01G146500 chr7A 83.863 409 54 9 1 405 222640150 222639750 2.390000e-101 379.0
6 TraesCS7B01G146500 chr7A 88.462 52 4 2 628 678 200229523 200229473 9.850000e-06 62.1
7 TraesCS7B01G146500 chr7D 91.496 2446 146 24 617 3035 210023451 210021041 0.000000e+00 3308.0
8 TraesCS7B01G146500 chr6B 91.379 754 43 5 1857 2589 438944942 438945694 0.000000e+00 1013.0
9 TraesCS7B01G146500 chr6B 93.119 218 14 1 3071 3287 136932996 136932779 5.290000e-83 318.0
10 TraesCS7B01G146500 chr6B 92.237 219 14 3 3071 3287 346410235 346410452 1.150000e-79 307.0
11 TraesCS7B01G146500 chr5A 91.417 501 35 2 2060 2552 396378955 396379455 0.000000e+00 680.0
12 TraesCS7B01G146500 chr5A 80.169 474 62 21 1033 1490 476413258 476413715 3.160000e-85 326.0
13 TraesCS7B01G146500 chr5A 95.000 200 10 0 1857 2056 396370018 396370217 6.850000e-82 315.0
14 TraesCS7B01G146500 chr2B 96.330 218 6 2 3070 3285 594086388 594086171 1.120000e-94 357.0
15 TraesCS7B01G146500 chr2B 93.636 220 11 3 3069 3287 673167864 673167647 3.160000e-85 326.0
16 TraesCS7B01G146500 chr2B 90.826 218 12 4 2343 2552 464825692 464825475 5.370000e-73 285.0
17 TraesCS7B01G146500 chr2B 87.156 109 12 2 298 405 216863736 216863629 4.450000e-24 122.0
18 TraesCS7B01G146500 chr2B 80.612 98 14 5 311 405 722656463 722656558 1.640000e-08 71.3
19 TraesCS7B01G146500 chr2B 82.143 84 12 3 311 392 722647612 722647694 5.890000e-08 69.4
20 TraesCS7B01G146500 chr5D 80.632 475 71 14 1033 1492 374706933 374707401 6.750000e-92 348.0
21 TraesCS7B01G146500 chr5D 81.720 93 13 4 614 703 26787712 26787803 1.260000e-09 75.0
22 TraesCS7B01G146500 chr5D 76.033 121 21 5 616 732 361577904 361578020 4.580000e-04 56.5
23 TraesCS7B01G146500 chr6D 93.578 218 12 2 3071 3287 418689837 418690053 1.140000e-84 324.0
24 TraesCS7B01G146500 chr2A 93.578 218 13 1 3071 3287 608930504 608930721 1.140000e-84 324.0
25 TraesCS7B01G146500 chr3A 92.727 220 13 3 3071 3287 115386529 115386748 6.850000e-82 315.0
26 TraesCS7B01G146500 chr1B 92.627 217 15 1 3072 3287 269055281 269055497 8.860000e-81 311.0
27 TraesCS7B01G146500 chr1A 92.237 219 14 3 3071 3287 579202824 579203041 1.150000e-79 307.0
28 TraesCS7B01G146500 chr1D 90.476 63 6 0 614 676 73669202 73669264 2.100000e-12 84.2
29 TraesCS7B01G146500 chr6A 77.885 104 18 3 306 405 532006835 532006937 3.540000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G146500 chr7B 191520079 191523365 3286 False 2844.0 4939 100.0000 1 3287 2 chr7B.!!$F1 3286
1 TraesCS7B01G146500 chr7A 222637249 222640150 2901 True 1918.5 3458 88.0995 1 3035 2 chr7A.!!$R3 3034
2 TraesCS7B01G146500 chr7A 619563342 619564023 681 False 961.0 961 92.2630 1876 2552 1 chr7A.!!$F1 676
3 TraesCS7B01G146500 chr7A 169733170 169733865 695 True 953.0 953 91.5590 1862 2552 1 chr7A.!!$R1 690
4 TraesCS7B01G146500 chr7D 210021041 210023451 2410 True 3308.0 3308 91.4960 617 3035 1 chr7D.!!$R1 2418
5 TraesCS7B01G146500 chr6B 438944942 438945694 752 False 1013.0 1013 91.3790 1857 2589 1 chr6B.!!$F2 732
6 TraesCS7B01G146500 chr5A 396378955 396379455 500 False 680.0 680 91.4170 2060 2552 1 chr5A.!!$F2 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 276 0.179001 ACTATATGCAAACCCGGCCC 60.179 55.0 0.0 0.0 0.0 5.80 F
1365 1409 0.382515 GCTTCTACATCGCCGAGACT 59.617 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 1538 0.410663 TTGACGGGGAGGAGGTAGAA 59.589 55.0 0.0 0.0 0.0 2.10 R
3179 3271 0.036010 CTGGAGCGAGACATTTGGGT 60.036 55.0 0.0 0.0 0.0 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.202770 GGCCGCCACTATATTCTGGTT 60.203 52.381 3.91 0.00 0.00 3.67
44 45 2.038033 GGCCGCCACTATATTCTGGTTA 59.962 50.000 3.91 0.00 0.00 2.85
45 46 3.064931 GCCGCCACTATATTCTGGTTAC 58.935 50.000 1.43 0.00 0.00 2.50
46 47 3.314553 CCGCCACTATATTCTGGTTACG 58.685 50.000 1.43 0.00 0.00 3.18
47 48 3.243636 CCGCCACTATATTCTGGTTACGT 60.244 47.826 0.00 0.00 0.00 3.57
60 62 4.988540 TCTGGTTACGTTGATGACTTTCTG 59.011 41.667 0.00 0.00 0.00 3.02
69 71 2.029020 TGATGACTTTCTGGTCACTCCG 60.029 50.000 0.00 0.00 46.93 4.63
75 77 5.244402 TGACTTTCTGGTCACTCCGTTTATA 59.756 40.000 0.00 0.00 40.72 0.98
80 82 4.113354 CTGGTCACTCCGTTTATAAGCTC 58.887 47.826 0.00 0.00 39.52 4.09
83 85 4.361420 GTCACTCCGTTTATAAGCTCCTC 58.639 47.826 0.00 0.00 0.00 3.71
87 89 5.048921 CACTCCGTTTATAAGCTCCTCGATA 60.049 44.000 0.00 0.00 0.00 2.92
92 94 5.513495 CGTTTATAAGCTCCTCGATATGCTC 59.487 44.000 6.64 0.00 34.38 4.26
100 102 1.959985 CCTCGATATGCTCCACTCAGT 59.040 52.381 0.00 0.00 0.00 3.41
102 104 2.620585 CTCGATATGCTCCACTCAGTCA 59.379 50.000 0.00 0.00 0.00 3.41
116 118 0.900421 CAGTCAGAGGACCAGATGCA 59.100 55.000 0.00 0.00 45.48 3.96
152 154 3.641031 TGACGCGTCATAGTGGATG 57.359 52.632 36.40 0.00 34.14 3.51
159 161 2.159099 GCGTCATAGTGGATGTTGGAGA 60.159 50.000 0.00 0.00 36.84 3.71
160 162 3.678806 GCGTCATAGTGGATGTTGGAGAA 60.679 47.826 0.00 0.00 36.84 2.87
179 181 4.133078 AGAAAGAAGACTTTGGCACTCTG 58.867 43.478 0.00 0.00 44.97 3.35
192 194 7.665559 ACTTTGGCACTCTGAAGTATTTGAATA 59.334 33.333 0.00 0.00 33.25 1.75
194 196 7.558161 TGGCACTCTGAAGTATTTGAATATG 57.442 36.000 0.00 0.00 33.25 1.78
213 215 9.195411 TGAATATGTTTTCAATTTCTGTGAAGC 57.805 29.630 0.00 0.00 36.41 3.86
215 217 5.336150 TGTTTTCAATTTCTGTGAAGCCA 57.664 34.783 0.00 0.00 36.41 4.75
217 219 5.984926 TGTTTTCAATTTCTGTGAAGCCATC 59.015 36.000 0.00 0.00 36.41 3.51
218 220 4.789012 TTCAATTTCTGTGAAGCCATCC 57.211 40.909 0.00 0.00 31.45 3.51
243 245 8.768397 CCTGTATATATGACCTATGGCCTTTTA 58.232 37.037 3.32 0.00 0.00 1.52
249 251 5.249780 TGACCTATGGCCTTTTAGAACAA 57.750 39.130 3.32 0.00 0.00 2.83
255 257 6.208599 CCTATGGCCTTTTAGAACAAAAGACA 59.791 38.462 3.32 9.17 39.04 3.41
259 261 6.775629 TGGCCTTTTAGAACAAAAGACACTAT 59.224 34.615 3.32 0.00 39.04 2.12
261 263 8.957466 GGCCTTTTAGAACAAAAGACACTATAT 58.043 33.333 10.30 0.00 39.04 0.86
274 276 0.179001 ACTATATGCAAACCCGGCCC 60.179 55.000 0.00 0.00 0.00 5.80
284 286 2.234908 CAAACCCGGCCCAAATATGAAA 59.765 45.455 0.00 0.00 0.00 2.69
296 298 8.673711 GGCCCAAATATGAAAAATAAAAGAACC 58.326 33.333 0.00 0.00 0.00 3.62
304 306 7.546778 TGAAAAATAAAAGAACCAGCAAACC 57.453 32.000 0.00 0.00 0.00 3.27
312 314 1.798813 GAACCAGCAAACCGAGTGTAG 59.201 52.381 0.00 0.00 0.00 2.74
313 315 0.602905 ACCAGCAAACCGAGTGTAGC 60.603 55.000 0.00 0.00 0.00 3.58
318 320 1.336887 GCAAACCGAGTGTAGCTCAGA 60.337 52.381 0.00 0.00 44.33 3.27
319 321 2.675317 GCAAACCGAGTGTAGCTCAGAT 60.675 50.000 0.00 0.00 44.33 2.90
320 322 2.926200 CAAACCGAGTGTAGCTCAGATG 59.074 50.000 0.00 0.00 44.33 2.90
321 323 1.107114 ACCGAGTGTAGCTCAGATGG 58.893 55.000 0.00 0.00 44.33 3.51
322 324 1.107114 CCGAGTGTAGCTCAGATGGT 58.893 55.000 0.00 0.00 44.33 3.55
323 325 1.478510 CCGAGTGTAGCTCAGATGGTT 59.521 52.381 0.00 0.00 44.33 3.67
324 326 2.688446 CCGAGTGTAGCTCAGATGGTTA 59.312 50.000 0.00 0.00 44.33 2.85
325 327 3.243234 CCGAGTGTAGCTCAGATGGTTAG 60.243 52.174 0.00 0.00 44.33 2.34
326 328 3.628032 CGAGTGTAGCTCAGATGGTTAGA 59.372 47.826 0.00 0.00 44.33 2.10
327 329 4.277174 CGAGTGTAGCTCAGATGGTTAGAT 59.723 45.833 0.00 0.00 44.33 1.98
328 330 5.221145 CGAGTGTAGCTCAGATGGTTAGATT 60.221 44.000 0.00 0.00 44.33 2.40
329 331 6.552445 AGTGTAGCTCAGATGGTTAGATTT 57.448 37.500 0.00 0.00 0.00 2.17
330 332 6.578023 AGTGTAGCTCAGATGGTTAGATTTC 58.422 40.000 0.00 0.00 0.00 2.17
331 333 6.382570 AGTGTAGCTCAGATGGTTAGATTTCT 59.617 38.462 0.00 0.00 0.00 2.52
332 334 7.044798 GTGTAGCTCAGATGGTTAGATTTCTT 58.955 38.462 0.00 0.00 0.00 2.52
353 355 8.737168 TTCTTATGGTGAAATCAACCTATCAG 57.263 34.615 0.00 0.00 31.06 2.90
368 370 8.010697 TCAACCTATCAGGATTCAAGTCCTATA 58.989 37.037 0.00 0.00 46.85 1.31
369 371 7.784470 ACCTATCAGGATTCAAGTCCTATAC 57.216 40.000 0.00 0.00 46.85 1.47
370 372 7.540183 ACCTATCAGGATTCAAGTCCTATACT 58.460 38.462 0.00 0.00 46.85 2.12
371 373 8.013667 ACCTATCAGGATTCAAGTCCTATACTT 58.986 37.037 0.00 0.00 46.85 2.24
384 397 6.998802 AGTCCTATACTTGGCATTAGTGATC 58.001 40.000 2.10 0.00 33.35 2.92
385 398 5.864474 GTCCTATACTTGGCATTAGTGATCG 59.136 44.000 2.10 0.00 0.00 3.69
635 648 5.670792 TCGACTATGAAGGTGTTTATGGT 57.329 39.130 0.00 0.00 0.00 3.55
658 671 6.074005 GTGACTTCGTCAATCTCAAAATGAC 58.926 40.000 0.00 0.00 44.49 3.06
685 698 2.525055 GCTTAGTCTCTCGAAGTGCTG 58.475 52.381 0.00 0.00 32.61 4.41
687 700 3.753842 CTTAGTCTCTCGAAGTGCTGAC 58.246 50.000 0.00 0.00 0.00 3.51
705 718 2.017049 GACAGGGATAATGTGTGCACC 58.983 52.381 15.69 6.37 0.00 5.01
812 841 2.135664 TAAATAGAAGAGAGCGCCGC 57.864 50.000 2.29 0.00 0.00 6.53
813 842 0.872021 AAATAGAAGAGAGCGCCGCG 60.872 55.000 8.83 8.83 0.00 6.46
824 853 4.870305 CGCCGCGCTCTTATATCT 57.130 55.556 5.56 0.00 0.00 1.98
825 854 2.643044 CGCCGCGCTCTTATATCTC 58.357 57.895 5.56 0.00 0.00 2.75
878 922 2.159448 CGCTCTTATATCTCGCCTCCAG 60.159 54.545 0.00 0.00 0.00 3.86
1329 1373 0.608640 CCCTAGCTGACCGTGTCTTT 59.391 55.000 0.00 0.00 33.15 2.52
1365 1409 0.382515 GCTTCTACATCGCCGAGACT 59.617 55.000 0.00 0.00 0.00 3.24
1461 1505 1.078708 CGACGGCCATGTTACCCTT 60.079 57.895 2.24 0.00 0.00 3.95
1503 1547 2.134933 CCTCCCGGCTTCTACCTCC 61.135 68.421 0.00 0.00 0.00 4.30
1666 1710 0.591659 GAACCTGGTTCGTTTCCTGC 59.408 55.000 22.67 0.00 32.81 4.85
1667 1711 0.182775 AACCTGGTTCGTTTCCTGCT 59.817 50.000 6.18 0.00 0.00 4.24
1713 1757 0.843309 TGGCCAAGAAGACCAAGTCA 59.157 50.000 0.61 0.00 34.60 3.41
1809 1853 3.755628 GAGGAGTACGTGGCGCCA 61.756 66.667 29.03 29.03 0.00 5.69
2146 2190 4.169696 CCTACATCCCGCCGCCAA 62.170 66.667 0.00 0.00 0.00 4.52
2158 2202 2.280524 CGCCAACGGAGGACAACA 60.281 61.111 0.00 0.00 34.97 3.33
2166 2210 0.031585 CGGAGGACAACACAGTCGAA 59.968 55.000 0.00 0.00 39.42 3.71
2168 2212 1.340248 GGAGGACAACACAGTCGAAGA 59.660 52.381 0.00 0.00 39.42 2.87
2247 2291 3.151022 CCAGAGTCGGGCTCCTCC 61.151 72.222 5.89 0.00 45.21 4.30
2309 2359 0.386838 GTATAGCTTACGTGGCCGGT 59.613 55.000 1.90 0.40 38.78 5.28
2338 2388 0.601558 GTGGTAGTCGACTTGCTCCA 59.398 55.000 25.44 21.83 0.00 3.86
2339 2389 1.204941 GTGGTAGTCGACTTGCTCCAT 59.795 52.381 25.44 0.00 0.00 3.41
2372 2422 3.539107 CGTAACGAGCGAACGGGC 61.539 66.667 12.22 0.00 37.61 6.13
2426 2494 2.371306 GGGCGTGGTGGTGTAAATAAT 58.629 47.619 0.00 0.00 0.00 1.28
2487 2555 0.531974 GGTGCACGGTTCAGTTGAGA 60.532 55.000 11.45 0.00 0.00 3.27
2576 2665 1.012841 GCTACTGCTCCATCTTGTGC 58.987 55.000 0.00 0.00 36.03 4.57
2609 2698 7.974501 TGAATCAACTACGAGTAGAATTTCTCC 59.025 37.037 16.27 0.00 36.97 3.71
2610 2699 6.829229 TCAACTACGAGTAGAATTTCTCCA 57.171 37.500 16.27 0.00 36.97 3.86
2616 2705 4.283722 ACGAGTAGAATTTCTCCAGTGGTT 59.716 41.667 9.54 0.00 0.00 3.67
2644 2735 4.019681 ACCGGAACCATAGACTTTGATGAA 60.020 41.667 9.46 0.00 0.00 2.57
2658 2749 2.985896 TGATGAAACAGTCCGATTCCC 58.014 47.619 0.00 0.00 0.00 3.97
2732 2823 1.711206 GAGTGTCGTTGGTTAGAGCC 58.289 55.000 0.00 0.00 0.00 4.70
2741 2832 6.377996 TGTCGTTGGTTAGAGCCTAGTATTTA 59.622 38.462 0.00 0.00 0.00 1.40
2742 2833 6.694844 GTCGTTGGTTAGAGCCTAGTATTTAC 59.305 42.308 0.00 0.00 0.00 2.01
2882 2973 3.917985 AGTTGGCGTGCGATTTTTAAATC 59.082 39.130 5.34 5.34 41.02 2.17
2918 3010 7.921786 TTTATCTATCCCCTTGCATAATTCG 57.078 36.000 0.00 0.00 0.00 3.34
2945 3037 1.079474 TACGTGCACGCATGGACAT 60.079 52.632 37.35 18.73 46.99 3.06
2985 3077 5.874810 CCTTCTCGTGTAATCAAGGAAATCA 59.125 40.000 0.00 0.00 36.48 2.57
3035 3127 7.994425 TGGTCAAGTACAATCATACACATTT 57.006 32.000 0.00 0.00 0.00 2.32
3036 3128 8.039603 TGGTCAAGTACAATCATACACATTTC 57.960 34.615 0.00 0.00 0.00 2.17
3037 3129 7.148490 TGGTCAAGTACAATCATACACATTTCG 60.148 37.037 0.00 0.00 0.00 3.46
3038 3130 7.064134 GGTCAAGTACAATCATACACATTTCGA 59.936 37.037 0.00 0.00 0.00 3.71
3039 3131 7.898309 GTCAAGTACAATCATACACATTTCGAC 59.102 37.037 0.00 0.00 0.00 4.20
3040 3132 7.600752 TCAAGTACAATCATACACATTTCGACA 59.399 33.333 0.00 0.00 0.00 4.35
3041 3133 8.390354 CAAGTACAATCATACACATTTCGACAT 58.610 33.333 0.00 0.00 0.00 3.06
3042 3134 8.492673 AGTACAATCATACACATTTCGACATT 57.507 30.769 0.00 0.00 0.00 2.71
3043 3135 8.390354 AGTACAATCATACACATTTCGACATTG 58.610 33.333 0.00 0.00 0.00 2.82
3044 3136 6.554419 ACAATCATACACATTTCGACATTGG 58.446 36.000 0.00 0.00 0.00 3.16
3045 3137 6.150976 ACAATCATACACATTTCGACATTGGT 59.849 34.615 0.00 0.00 0.00 3.67
3046 3138 7.335673 ACAATCATACACATTTCGACATTGGTA 59.664 33.333 0.00 0.00 0.00 3.25
3047 3139 7.857734 ATCATACACATTTCGACATTGGTAA 57.142 32.000 0.00 0.00 0.00 2.85
3048 3140 7.302350 TCATACACATTTCGACATTGGTAAG 57.698 36.000 0.00 0.00 0.00 2.34
3049 3141 6.876789 TCATACACATTTCGACATTGGTAAGT 59.123 34.615 0.00 0.00 0.00 2.24
3050 3142 7.389330 TCATACACATTTCGACATTGGTAAGTT 59.611 33.333 0.00 0.00 0.00 2.66
3051 3143 6.385649 ACACATTTCGACATTGGTAAGTTT 57.614 33.333 0.00 0.00 0.00 2.66
3052 3144 6.801575 ACACATTTCGACATTGGTAAGTTTT 58.198 32.000 0.00 0.00 0.00 2.43
3053 3145 7.262048 ACACATTTCGACATTGGTAAGTTTTT 58.738 30.769 0.00 0.00 0.00 1.94
3098 3190 6.415798 TTTTAAACAAGGCAAAAGACTTGC 57.584 33.333 10.80 0.78 46.03 4.01
3108 3200 5.025986 GCAAAAGACTTGCCATTTCATTG 57.974 39.130 0.00 0.00 39.38 2.82
3109 3201 4.751098 GCAAAAGACTTGCCATTTCATTGA 59.249 37.500 0.00 0.00 39.38 2.57
3110 3202 5.410439 GCAAAAGACTTGCCATTTCATTGAT 59.590 36.000 0.00 0.00 39.38 2.57
3111 3203 6.072893 GCAAAAGACTTGCCATTTCATTGATT 60.073 34.615 0.00 0.00 39.38 2.57
3112 3204 7.118101 GCAAAAGACTTGCCATTTCATTGATTA 59.882 33.333 0.00 0.00 39.38 1.75
3113 3205 8.991026 CAAAAGACTTGCCATTTCATTGATTAA 58.009 29.630 0.00 0.00 0.00 1.40
3114 3206 8.767478 AAAGACTTGCCATTTCATTGATTAAG 57.233 30.769 0.00 0.00 0.00 1.85
3115 3207 6.870769 AGACTTGCCATTTCATTGATTAAGG 58.129 36.000 0.00 0.00 0.00 2.69
3116 3208 5.981174 ACTTGCCATTTCATTGATTAAGGG 58.019 37.500 0.00 0.00 0.00 3.95
3117 3209 5.721000 ACTTGCCATTTCATTGATTAAGGGA 59.279 36.000 6.07 0.00 0.00 4.20
3118 3210 5.857471 TGCCATTTCATTGATTAAGGGAG 57.143 39.130 6.07 0.00 0.00 4.30
3119 3211 4.650588 TGCCATTTCATTGATTAAGGGAGG 59.349 41.667 6.07 0.00 0.00 4.30
3120 3212 4.895297 GCCATTTCATTGATTAAGGGAGGA 59.105 41.667 6.07 0.00 0.00 3.71
3121 3213 5.363580 GCCATTTCATTGATTAAGGGAGGAA 59.636 40.000 6.07 0.00 0.00 3.36
3122 3214 6.462067 GCCATTTCATTGATTAAGGGAGGAAG 60.462 42.308 6.07 0.00 0.00 3.46
3123 3215 6.608808 CCATTTCATTGATTAAGGGAGGAAGT 59.391 38.462 0.00 0.00 0.00 3.01
3124 3216 7.124750 CCATTTCATTGATTAAGGGAGGAAGTT 59.875 37.037 0.00 0.00 0.00 2.66
3125 3217 8.534496 CATTTCATTGATTAAGGGAGGAAGTTT 58.466 33.333 0.00 0.00 0.00 2.66
3126 3218 8.491045 TTTCATTGATTAAGGGAGGAAGTTTT 57.509 30.769 0.00 0.00 0.00 2.43
3127 3219 9.594936 TTTCATTGATTAAGGGAGGAAGTTTTA 57.405 29.630 0.00 0.00 0.00 1.52
3128 3220 8.807948 TCATTGATTAAGGGAGGAAGTTTTAG 57.192 34.615 0.00 0.00 0.00 1.85
3129 3221 8.611257 TCATTGATTAAGGGAGGAAGTTTTAGA 58.389 33.333 0.00 0.00 0.00 2.10
3130 3222 8.678199 CATTGATTAAGGGAGGAAGTTTTAGAC 58.322 37.037 0.00 0.00 0.00 2.59
3131 3223 7.324388 TGATTAAGGGAGGAAGTTTTAGACA 57.676 36.000 0.00 0.00 0.00 3.41
3132 3224 7.394816 TGATTAAGGGAGGAAGTTTTAGACAG 58.605 38.462 0.00 0.00 0.00 3.51
3133 3225 7.236847 TGATTAAGGGAGGAAGTTTTAGACAGA 59.763 37.037 0.00 0.00 0.00 3.41
3134 3226 5.906772 AAGGGAGGAAGTTTTAGACAGAA 57.093 39.130 0.00 0.00 0.00 3.02
3135 3227 5.906772 AGGGAGGAAGTTTTAGACAGAAA 57.093 39.130 0.00 0.00 0.00 2.52
3136 3228 6.455690 AGGGAGGAAGTTTTAGACAGAAAT 57.544 37.500 0.00 0.00 0.00 2.17
3137 3229 6.477253 AGGGAGGAAGTTTTAGACAGAAATC 58.523 40.000 0.00 0.00 0.00 2.17
3138 3230 5.351740 GGGAGGAAGTTTTAGACAGAAATCG 59.648 44.000 0.00 0.00 0.00 3.34
3139 3231 6.164176 GGAGGAAGTTTTAGACAGAAATCGA 58.836 40.000 0.00 0.00 0.00 3.59
3140 3232 6.649557 GGAGGAAGTTTTAGACAGAAATCGAA 59.350 38.462 0.00 0.00 0.00 3.71
3141 3233 7.172703 GGAGGAAGTTTTAGACAGAAATCGAAA 59.827 37.037 0.00 0.00 0.00 3.46
3142 3234 8.089115 AGGAAGTTTTAGACAGAAATCGAAAG 57.911 34.615 0.00 0.00 0.00 2.62
3143 3235 6.797513 GGAAGTTTTAGACAGAAATCGAAAGC 59.202 38.462 0.00 0.00 0.00 3.51
3144 3236 5.916969 AGTTTTAGACAGAAATCGAAAGCG 58.083 37.500 0.00 0.00 32.36 4.68
3145 3237 4.921470 TTTAGACAGAAATCGAAAGCGG 57.079 40.909 0.00 0.00 38.28 5.52
3146 3238 1.079503 AGACAGAAATCGAAAGCGGC 58.920 50.000 0.00 0.00 38.28 6.53
3147 3239 0.796312 GACAGAAATCGAAAGCGGCA 59.204 50.000 1.45 0.00 38.28 5.69
3148 3240 1.196808 GACAGAAATCGAAAGCGGCAA 59.803 47.619 1.45 0.00 38.28 4.52
3149 3241 1.606668 ACAGAAATCGAAAGCGGCAAA 59.393 42.857 1.45 0.00 38.28 3.68
3150 3242 2.228822 ACAGAAATCGAAAGCGGCAAAT 59.771 40.909 1.45 0.00 38.28 2.32
3151 3243 3.438781 ACAGAAATCGAAAGCGGCAAATA 59.561 39.130 1.45 0.00 38.28 1.40
3152 3244 4.083003 ACAGAAATCGAAAGCGGCAAATAA 60.083 37.500 1.45 0.00 38.28 1.40
3153 3245 4.856487 CAGAAATCGAAAGCGGCAAATAAA 59.144 37.500 1.45 0.00 38.28 1.40
3154 3246 5.344665 CAGAAATCGAAAGCGGCAAATAAAA 59.655 36.000 1.45 0.00 38.28 1.52
3155 3247 5.572896 AGAAATCGAAAGCGGCAAATAAAAG 59.427 36.000 1.45 0.00 38.28 2.27
3156 3248 3.210358 TCGAAAGCGGCAAATAAAAGG 57.790 42.857 1.45 0.00 38.28 3.11
3157 3249 2.814919 TCGAAAGCGGCAAATAAAAGGA 59.185 40.909 1.45 0.00 38.28 3.36
3158 3250 2.914838 CGAAAGCGGCAAATAAAAGGAC 59.085 45.455 1.45 0.00 0.00 3.85
3159 3251 3.365969 CGAAAGCGGCAAATAAAAGGACT 60.366 43.478 1.45 0.00 0.00 3.85
3160 3252 4.142773 CGAAAGCGGCAAATAAAAGGACTA 60.143 41.667 1.45 0.00 0.00 2.59
3161 3253 4.696899 AAGCGGCAAATAAAAGGACTAC 57.303 40.909 1.45 0.00 0.00 2.73
3162 3254 3.951663 AGCGGCAAATAAAAGGACTACT 58.048 40.909 1.45 0.00 0.00 2.57
3163 3255 3.939592 AGCGGCAAATAAAAGGACTACTC 59.060 43.478 1.45 0.00 0.00 2.59
3164 3256 3.939592 GCGGCAAATAAAAGGACTACTCT 59.060 43.478 0.00 0.00 0.00 3.24
3165 3257 4.034163 GCGGCAAATAAAAGGACTACTCTC 59.966 45.833 0.00 0.00 0.00 3.20
3166 3258 4.267928 CGGCAAATAAAAGGACTACTCTCG 59.732 45.833 0.00 0.00 0.00 4.04
3167 3259 4.034163 GGCAAATAAAAGGACTACTCTCGC 59.966 45.833 0.00 0.00 0.00 5.03
3168 3260 4.259850 GCAAATAAAAGGACTACTCTCGCG 60.260 45.833 0.00 0.00 0.00 5.87
3169 3261 3.712091 ATAAAAGGACTACTCTCGCGG 57.288 47.619 6.13 0.00 0.00 6.46
3170 3262 0.108756 AAAAGGACTACTCTCGCGGC 60.109 55.000 6.13 0.00 0.00 6.53
3171 3263 1.248785 AAAGGACTACTCTCGCGGCA 61.249 55.000 6.13 0.00 0.00 5.69
3172 3264 1.038130 AAGGACTACTCTCGCGGCAT 61.038 55.000 6.13 0.00 0.00 4.40
3173 3265 1.038130 AGGACTACTCTCGCGGCATT 61.038 55.000 6.13 0.00 0.00 3.56
3174 3266 0.666913 GGACTACTCTCGCGGCATTA 59.333 55.000 6.13 0.00 0.00 1.90
3175 3267 1.599916 GGACTACTCTCGCGGCATTAC 60.600 57.143 6.13 0.00 0.00 1.89
3176 3268 1.065102 GACTACTCTCGCGGCATTACA 59.935 52.381 6.13 0.00 0.00 2.41
3177 3269 1.475280 ACTACTCTCGCGGCATTACAA 59.525 47.619 6.13 0.00 0.00 2.41
3178 3270 1.852895 CTACTCTCGCGGCATTACAAC 59.147 52.381 6.13 0.00 0.00 3.32
3179 3271 0.037697 ACTCTCGCGGCATTACAACA 60.038 50.000 6.13 0.00 0.00 3.33
3180 3272 0.370273 CTCTCGCGGCATTACAACAC 59.630 55.000 6.13 0.00 0.00 3.32
3181 3273 1.017177 TCTCGCGGCATTACAACACC 61.017 55.000 6.13 0.00 0.00 4.16
3182 3274 1.977594 CTCGCGGCATTACAACACCC 61.978 60.000 6.13 0.00 0.00 4.61
3183 3275 2.328856 CGCGGCATTACAACACCCA 61.329 57.895 0.00 0.00 0.00 4.51
3184 3276 1.857318 CGCGGCATTACAACACCCAA 61.857 55.000 0.00 0.00 0.00 4.12
3185 3277 0.315568 GCGGCATTACAACACCCAAA 59.684 50.000 0.00 0.00 0.00 3.28
3186 3278 1.067213 GCGGCATTACAACACCCAAAT 60.067 47.619 0.00 0.00 0.00 2.32
3187 3279 2.605030 CGGCATTACAACACCCAAATG 58.395 47.619 0.00 0.00 33.45 2.32
3188 3280 2.029470 CGGCATTACAACACCCAAATGT 60.029 45.455 0.00 0.00 32.99 2.71
3189 3281 3.584834 GGCATTACAACACCCAAATGTC 58.415 45.455 0.00 0.00 32.99 3.06
3190 3282 3.258123 GGCATTACAACACCCAAATGTCT 59.742 43.478 0.00 0.00 32.53 3.41
3191 3283 4.485163 GCATTACAACACCCAAATGTCTC 58.515 43.478 0.00 0.00 32.99 3.36
3192 3284 4.722194 CATTACAACACCCAAATGTCTCG 58.278 43.478 0.00 0.00 30.55 4.04
3193 3285 0.951558 ACAACACCCAAATGTCTCGC 59.048 50.000 0.00 0.00 30.55 5.03
3194 3286 1.238439 CAACACCCAAATGTCTCGCT 58.762 50.000 0.00 0.00 30.55 4.93
3195 3287 1.197721 CAACACCCAAATGTCTCGCTC 59.802 52.381 0.00 0.00 30.55 5.03
3196 3288 0.321653 ACACCCAAATGTCTCGCTCC 60.322 55.000 0.00 0.00 0.00 4.70
3197 3289 0.321564 CACCCAAATGTCTCGCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
3198 3290 0.036010 ACCCAAATGTCTCGCTCCAG 60.036 55.000 0.00 0.00 0.00 3.86
3199 3291 1.372087 CCCAAATGTCTCGCTCCAGC 61.372 60.000 0.00 0.00 37.78 4.85
3200 3292 1.372087 CCAAATGTCTCGCTCCAGCC 61.372 60.000 0.00 0.00 37.91 4.85
3201 3293 0.674581 CAAATGTCTCGCTCCAGCCA 60.675 55.000 0.00 0.00 37.91 4.75
3202 3294 0.254178 AAATGTCTCGCTCCAGCCAT 59.746 50.000 0.00 0.00 37.91 4.40
3203 3295 1.123077 AATGTCTCGCTCCAGCCATA 58.877 50.000 0.00 0.00 37.91 2.74
3204 3296 0.678395 ATGTCTCGCTCCAGCCATAG 59.322 55.000 0.00 0.00 37.91 2.23
3205 3297 1.300542 GTCTCGCTCCAGCCATAGC 60.301 63.158 0.00 0.00 37.91 2.97
3206 3298 2.030262 CTCGCTCCAGCCATAGCC 59.970 66.667 0.00 0.00 41.25 3.93
3207 3299 3.527775 CTCGCTCCAGCCATAGCCC 62.528 68.421 0.00 0.00 41.25 5.19
3208 3300 3.865383 CGCTCCAGCCATAGCCCA 61.865 66.667 0.00 0.00 41.25 5.36
3209 3301 2.597340 GCTCCAGCCATAGCCCAA 59.403 61.111 0.00 0.00 41.25 4.12
3210 3302 1.076777 GCTCCAGCCATAGCCCAAA 60.077 57.895 0.00 0.00 41.25 3.28
3211 3303 1.105759 GCTCCAGCCATAGCCCAAAG 61.106 60.000 0.00 0.00 41.25 2.77
3212 3304 1.076777 TCCAGCCATAGCCCAAAGC 60.077 57.895 0.00 0.00 41.25 3.51
3223 3315 1.517242 GCCCAAAGCGATATCTCCTG 58.483 55.000 0.34 0.00 0.00 3.86
3224 3316 1.517242 CCCAAAGCGATATCTCCTGC 58.483 55.000 0.34 0.00 0.00 4.85
3225 3317 1.071385 CCCAAAGCGATATCTCCTGCT 59.929 52.381 0.34 0.00 39.89 4.24
3227 3319 2.547211 CCAAAGCGATATCTCCTGCTTG 59.453 50.000 14.00 9.44 46.23 4.01
3228 3320 3.461061 CAAAGCGATATCTCCTGCTTGA 58.539 45.455 14.00 0.00 46.23 3.02
3229 3321 4.063689 CAAAGCGATATCTCCTGCTTGAT 58.936 43.478 14.00 0.56 46.23 2.57
3230 3322 4.348863 AAGCGATATCTCCTGCTTGATT 57.651 40.909 12.90 0.00 45.29 2.57
3231 3323 4.348863 AGCGATATCTCCTGCTTGATTT 57.651 40.909 0.34 0.00 32.89 2.17
3232 3324 4.712476 AGCGATATCTCCTGCTTGATTTT 58.288 39.130 0.34 0.00 32.89 1.82
3233 3325 4.514441 AGCGATATCTCCTGCTTGATTTTG 59.486 41.667 0.34 0.00 32.89 2.44
3234 3326 4.274459 GCGATATCTCCTGCTTGATTTTGT 59.726 41.667 0.34 0.00 0.00 2.83
3235 3327 5.559799 GCGATATCTCCTGCTTGATTTTGTC 60.560 44.000 0.34 0.00 0.00 3.18
3236 3328 5.332883 CGATATCTCCTGCTTGATTTTGTCG 60.333 44.000 0.34 0.00 0.00 4.35
3237 3329 3.401033 TCTCCTGCTTGATTTTGTCGA 57.599 42.857 0.00 0.00 0.00 4.20
3238 3330 3.942829 TCTCCTGCTTGATTTTGTCGAT 58.057 40.909 0.00 0.00 0.00 3.59
3239 3331 3.686241 TCTCCTGCTTGATTTTGTCGATG 59.314 43.478 0.00 0.00 0.00 3.84
3240 3332 3.673902 TCCTGCTTGATTTTGTCGATGA 58.326 40.909 0.00 0.00 0.00 2.92
3241 3333 4.264253 TCCTGCTTGATTTTGTCGATGAT 58.736 39.130 0.00 0.00 0.00 2.45
3242 3334 4.095334 TCCTGCTTGATTTTGTCGATGATG 59.905 41.667 0.00 0.00 0.00 3.07
3243 3335 4.348656 CTGCTTGATTTTGTCGATGATGG 58.651 43.478 0.00 0.00 0.00 3.51
3244 3336 3.758023 TGCTTGATTTTGTCGATGATGGT 59.242 39.130 0.00 0.00 0.00 3.55
3245 3337 4.142622 TGCTTGATTTTGTCGATGATGGTC 60.143 41.667 0.00 0.00 0.00 4.02
3246 3338 4.142622 GCTTGATTTTGTCGATGATGGTCA 60.143 41.667 0.00 0.00 0.00 4.02
3247 3339 5.449588 GCTTGATTTTGTCGATGATGGTCAT 60.450 40.000 0.00 0.00 40.34 3.06
3248 3340 5.488645 TGATTTTGTCGATGATGGTCATG 57.511 39.130 0.00 0.00 37.20 3.07
3249 3341 4.336153 TGATTTTGTCGATGATGGTCATGG 59.664 41.667 0.00 0.00 37.20 3.66
3250 3342 3.625649 TTTGTCGATGATGGTCATGGA 57.374 42.857 0.00 0.00 38.90 3.41
3251 3343 3.625649 TTGTCGATGATGGTCATGGAA 57.374 42.857 6.28 0.00 41.96 3.53
3252 3344 3.183793 TGTCGATGATGGTCATGGAAG 57.816 47.619 6.28 0.00 41.96 3.46
3253 3345 2.158914 TGTCGATGATGGTCATGGAAGG 60.159 50.000 6.28 0.00 41.96 3.46
3254 3346 1.417517 TCGATGATGGTCATGGAAGGG 59.582 52.381 2.72 0.00 38.40 3.95
3255 3347 1.544093 CGATGATGGTCATGGAAGGGG 60.544 57.143 0.00 0.00 37.20 4.79
3256 3348 0.186873 ATGATGGTCATGGAAGGGGC 59.813 55.000 0.00 0.00 35.43 5.80
3257 3349 1.152673 GATGGTCATGGAAGGGGCC 60.153 63.158 0.00 0.00 0.00 5.80
3258 3350 2.965716 GATGGTCATGGAAGGGGCCG 62.966 65.000 0.00 0.00 0.00 6.13
3260 3352 4.115199 GTCATGGAAGGGGCCGCT 62.115 66.667 18.22 18.22 0.00 5.52
3261 3353 4.113815 TCATGGAAGGGGCCGCTG 62.114 66.667 24.89 11.48 0.00 5.18
3262 3354 4.113815 CATGGAAGGGGCCGCTGA 62.114 66.667 24.89 10.97 0.00 4.26
3263 3355 3.801997 ATGGAAGGGGCCGCTGAG 61.802 66.667 24.89 0.00 0.00 3.35
3265 3357 4.035102 GGAAGGGGCCGCTGAGTT 62.035 66.667 24.89 7.36 0.00 3.01
3266 3358 2.666098 GGAAGGGGCCGCTGAGTTA 61.666 63.158 24.89 0.00 0.00 2.24
3267 3359 1.449778 GAAGGGGCCGCTGAGTTAC 60.450 63.158 24.89 7.28 0.00 2.50
3268 3360 3.310860 AAGGGGCCGCTGAGTTACG 62.311 63.158 24.89 0.00 0.00 3.18
3269 3361 3.766691 GGGGCCGCTGAGTTACGA 61.767 66.667 13.57 0.00 0.00 3.43
3270 3362 2.263540 GGGCCGCTGAGTTACGAA 59.736 61.111 0.00 0.00 0.00 3.85
3271 3363 1.375013 GGGCCGCTGAGTTACGAAA 60.375 57.895 0.00 0.00 0.00 3.46
3272 3364 1.359459 GGGCCGCTGAGTTACGAAAG 61.359 60.000 0.00 0.00 0.00 2.62
3273 3365 0.389426 GGCCGCTGAGTTACGAAAGA 60.389 55.000 0.00 0.00 0.00 2.52
3274 3366 0.714439 GCCGCTGAGTTACGAAAGAC 59.286 55.000 0.00 0.00 0.00 3.01
3275 3367 1.669211 GCCGCTGAGTTACGAAAGACT 60.669 52.381 0.00 0.00 0.00 3.24
3276 3368 2.251893 CCGCTGAGTTACGAAAGACTC 58.748 52.381 0.00 0.00 42.01 3.36
3277 3369 2.095161 CCGCTGAGTTACGAAAGACTCT 60.095 50.000 5.27 0.00 42.13 3.24
3278 3370 3.126514 CCGCTGAGTTACGAAAGACTCTA 59.873 47.826 5.27 0.00 42.13 2.43
3279 3371 4.336101 CGCTGAGTTACGAAAGACTCTAG 58.664 47.826 5.27 0.00 42.13 2.43
3280 3372 4.099824 GCTGAGTTACGAAAGACTCTAGC 58.900 47.826 5.27 8.06 42.13 3.42
3281 3373 4.379603 GCTGAGTTACGAAAGACTCTAGCA 60.380 45.833 15.98 0.00 41.41 3.49
3282 3374 5.677598 GCTGAGTTACGAAAGACTCTAGCAT 60.678 44.000 15.98 0.00 41.41 3.79
3283 3375 6.268825 TGAGTTACGAAAGACTCTAGCATT 57.731 37.500 5.27 0.00 42.13 3.56
3284 3376 6.093404 TGAGTTACGAAAGACTCTAGCATTG 58.907 40.000 5.27 0.00 42.13 2.82
3285 3377 4.865365 AGTTACGAAAGACTCTAGCATTGC 59.135 41.667 0.00 0.00 0.00 3.56
3286 3378 2.263077 ACGAAAGACTCTAGCATTGCG 58.737 47.619 2.38 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.147821 CAGAAAGTCATCAACGTAACCAGAAT 59.852 38.462 0.00 0.00 0.00 2.40
40 41 4.062991 ACCAGAAAGTCATCAACGTAACC 58.937 43.478 0.00 0.00 0.00 2.85
43 44 4.594123 TGACCAGAAAGTCATCAACGTA 57.406 40.909 0.00 0.00 41.78 3.57
44 45 3.469008 TGACCAGAAAGTCATCAACGT 57.531 42.857 0.00 0.00 41.78 3.99
60 62 3.132467 AGGAGCTTATAAACGGAGTGACC 59.868 47.826 0.00 0.00 45.00 4.02
69 71 5.808030 GGAGCATATCGAGGAGCTTATAAAC 59.192 44.000 9.26 0.00 37.48 2.01
75 77 1.342819 GTGGAGCATATCGAGGAGCTT 59.657 52.381 9.26 0.00 37.48 3.74
80 82 1.959985 ACTGAGTGGAGCATATCGAGG 59.040 52.381 0.00 0.00 0.00 4.63
83 85 2.620585 TCTGACTGAGTGGAGCATATCG 59.379 50.000 0.00 0.00 0.00 2.92
87 89 1.193323 CCTCTGACTGAGTGGAGCAT 58.807 55.000 8.37 0.00 41.11 3.79
92 94 0.894141 CTGGTCCTCTGACTGAGTGG 59.106 60.000 8.37 0.00 41.47 4.00
100 102 1.351076 TGTTGCATCTGGTCCTCTGA 58.649 50.000 0.00 0.00 0.00 3.27
102 104 1.609061 CGTTGTTGCATCTGGTCCTCT 60.609 52.381 0.00 0.00 0.00 3.69
136 138 1.640428 CAACATCCACTATGACGCGT 58.360 50.000 13.85 13.85 39.07 6.01
139 141 3.801114 TCTCCAACATCCACTATGACG 57.199 47.619 0.00 0.00 39.07 4.35
144 146 5.544176 AGTCTTCTTTCTCCAACATCCACTA 59.456 40.000 0.00 0.00 0.00 2.74
152 154 3.632145 TGCCAAAGTCTTCTTTCTCCAAC 59.368 43.478 0.00 0.00 41.31 3.77
159 161 4.156455 TCAGAGTGCCAAAGTCTTCTTT 57.844 40.909 0.00 0.00 43.66 2.52
160 162 3.845781 TCAGAGTGCCAAAGTCTTCTT 57.154 42.857 0.00 0.00 36.35 2.52
192 194 5.916318 TGGCTTCACAGAAATTGAAAACAT 58.084 33.333 0.00 0.00 32.61 2.71
194 196 5.406477 GGATGGCTTCACAGAAATTGAAAAC 59.594 40.000 2.60 0.00 32.61 2.43
213 215 6.239714 GGCCATAGGTCATATATACAGGATGG 60.240 46.154 0.00 9.32 43.62 3.51
215 217 6.697654 AGGCCATAGGTCATATATACAGGAT 58.302 40.000 5.01 0.00 0.00 3.24
217 219 6.814954 AAGGCCATAGGTCATATATACAGG 57.185 41.667 5.01 0.00 0.00 4.00
218 220 9.823647 CTAAAAGGCCATAGGTCATATATACAG 57.176 37.037 5.01 0.00 0.00 2.74
243 245 7.309194 GGGTTTGCATATAGTGTCTTTTGTTCT 60.309 37.037 0.00 0.00 0.00 3.01
249 251 3.945285 CCGGGTTTGCATATAGTGTCTTT 59.055 43.478 0.00 0.00 0.00 2.52
255 257 0.179001 GGGCCGGGTTTGCATATAGT 60.179 55.000 2.18 0.00 0.00 2.12
259 261 0.616111 ATTTGGGCCGGGTTTGCATA 60.616 50.000 2.18 0.00 0.00 3.14
261 263 0.616111 ATATTTGGGCCGGGTTTGCA 60.616 50.000 2.18 0.00 0.00 4.08
284 286 5.068591 ACTCGGTTTGCTGGTTCTTTTATTT 59.931 36.000 0.00 0.00 0.00 1.40
296 298 1.071605 GAGCTACACTCGGTTTGCTG 58.928 55.000 0.00 0.00 37.92 4.41
312 314 6.995091 ACCATAAGAAATCTAACCATCTGAGC 59.005 38.462 0.00 0.00 0.00 4.26
313 315 8.206867 TCACCATAAGAAATCTAACCATCTGAG 58.793 37.037 0.00 0.00 0.00 3.35
326 328 9.699410 TGATAGGTTGATTTCACCATAAGAAAT 57.301 29.630 0.00 0.00 45.55 2.17
327 329 9.177608 CTGATAGGTTGATTTCACCATAAGAAA 57.822 33.333 0.00 0.00 39.11 2.52
328 330 7.775093 CCTGATAGGTTGATTTCACCATAAGAA 59.225 37.037 0.00 0.00 0.00 2.52
329 331 7.127186 TCCTGATAGGTTGATTTCACCATAAGA 59.873 37.037 0.00 0.00 36.53 2.10
330 332 7.282585 TCCTGATAGGTTGATTTCACCATAAG 58.717 38.462 0.00 0.00 36.53 1.73
331 333 7.206789 TCCTGATAGGTTGATTTCACCATAA 57.793 36.000 0.00 0.00 36.53 1.90
332 334 6.823286 TCCTGATAGGTTGATTTCACCATA 57.177 37.500 0.00 0.00 36.53 2.74
365 367 5.208463 TGCGATCACTAATGCCAAGTATA 57.792 39.130 0.00 0.00 0.00 1.47
368 370 2.401583 TGCGATCACTAATGCCAAGT 57.598 45.000 0.00 0.00 0.00 3.16
369 371 3.976793 AATGCGATCACTAATGCCAAG 57.023 42.857 0.00 0.00 0.00 3.61
370 372 4.398988 AGAAAATGCGATCACTAATGCCAA 59.601 37.500 0.00 0.00 0.00 4.52
371 373 3.947196 AGAAAATGCGATCACTAATGCCA 59.053 39.130 0.00 0.00 0.00 4.92
372 374 4.558538 AGAAAATGCGATCACTAATGCC 57.441 40.909 0.00 0.00 0.00 4.40
373 375 5.572211 TCAAGAAAATGCGATCACTAATGC 58.428 37.500 0.00 0.00 0.00 3.56
374 376 8.624701 AATTCAAGAAAATGCGATCACTAATG 57.375 30.769 0.00 0.00 0.00 1.90
658 671 0.247735 CGAGAGACTAAGCCGACACG 60.248 60.000 0.00 0.00 0.00 4.49
685 698 2.017049 GGTGCACACATTATCCCTGTC 58.983 52.381 20.43 0.00 0.00 3.51
687 700 1.392589 GGGTGCACACATTATCCCTG 58.607 55.000 20.43 0.00 32.89 4.45
705 718 0.249322 CTCACCCCTATAACGCACGG 60.249 60.000 0.00 0.00 0.00 4.94
809 838 2.643044 GCGAGATATAAGAGCGCGG 58.357 57.895 8.83 0.00 37.23 6.46
812 841 1.133407 GGAGGGCGAGATATAAGAGCG 59.867 57.143 0.00 0.00 0.00 5.03
813 842 1.478916 GGGAGGGCGAGATATAAGAGC 59.521 57.143 0.00 0.00 0.00 4.09
814 843 2.808919 TGGGAGGGCGAGATATAAGAG 58.191 52.381 0.00 0.00 0.00 2.85
816 845 3.370104 AGATGGGAGGGCGAGATATAAG 58.630 50.000 0.00 0.00 0.00 1.73
817 846 3.011821 AGAGATGGGAGGGCGAGATATAA 59.988 47.826 0.00 0.00 0.00 0.98
818 847 2.583101 AGAGATGGGAGGGCGAGATATA 59.417 50.000 0.00 0.00 0.00 0.86
819 848 1.360852 AGAGATGGGAGGGCGAGATAT 59.639 52.381 0.00 0.00 0.00 1.63
820 849 0.780637 AGAGATGGGAGGGCGAGATA 59.219 55.000 0.00 0.00 0.00 1.98
821 850 0.541764 GAGAGATGGGAGGGCGAGAT 60.542 60.000 0.00 0.00 0.00 2.75
822 851 1.152652 GAGAGATGGGAGGGCGAGA 60.153 63.158 0.00 0.00 0.00 4.04
823 852 1.152567 AGAGAGATGGGAGGGCGAG 60.153 63.158 0.00 0.00 0.00 5.03
824 853 1.152652 GAGAGAGATGGGAGGGCGA 60.153 63.158 0.00 0.00 0.00 5.54
825 854 0.758685 AAGAGAGAGATGGGAGGGCG 60.759 60.000 0.00 0.00 0.00 6.13
878 922 1.826487 GAGAGAGGCGAGGAGGGTC 60.826 68.421 0.00 0.00 0.00 4.46
1329 1373 4.215742 CGTATGGCGGCCGGAGAA 62.216 66.667 29.38 0.00 36.85 2.87
1494 1538 0.410663 TTGACGGGGAGGAGGTAGAA 59.589 55.000 0.00 0.00 0.00 2.10
1686 1730 3.984193 CTTCTTGGCCAGCTCGGGG 62.984 68.421 5.11 0.00 34.06 5.73
1860 1904 2.745100 TCGTAGACGAGCACGCCT 60.745 61.111 2.62 0.00 44.22 5.52
1946 1990 2.362632 CCGGGAACTCGACCTCCT 60.363 66.667 0.00 0.00 31.88 3.69
2146 2190 1.105167 TCGACTGTGTTGTCCTCCGT 61.105 55.000 0.00 0.00 33.70 4.69
2158 2202 1.122019 AAGCCCTGGTCTTCGACTGT 61.122 55.000 0.00 0.00 32.47 3.55
2166 2210 2.600769 ACGTCGAAGCCCTGGTCT 60.601 61.111 0.00 0.00 0.00 3.85
2168 2212 2.915659 TCACGTCGAAGCCCTGGT 60.916 61.111 0.00 0.00 0.00 4.00
2309 2359 2.165641 GTCGACTACCACATCCACATGA 59.834 50.000 8.70 0.00 33.72 3.07
2338 2388 0.539986 ACGGAACCGCAATCTACCAT 59.460 50.000 13.32 0.00 44.19 3.55
2339 2389 1.184431 TACGGAACCGCAATCTACCA 58.816 50.000 13.32 0.00 44.19 3.25
2388 2455 2.418333 CGTGTTCTCGACGTCTGCG 61.418 63.158 14.70 0.70 44.93 5.18
2413 2480 6.253013 GCTACACCGAAATTATTTACACCAC 58.747 40.000 0.00 0.00 0.00 4.16
2426 2494 1.070105 AACCAGCGCTACACCGAAA 59.930 52.632 10.99 0.00 0.00 3.46
2487 2555 0.480252 AGCAAGAAAGGCCTTGGACT 59.520 50.000 21.33 15.85 42.73 3.85
2576 2665 7.628235 TCTACTCGTAGTTGATTCAGTAATCG 58.372 38.462 4.19 0.00 38.25 3.34
2616 2705 4.895668 AAGTCTATGGTTCCGGTAAACA 57.104 40.909 0.00 3.87 39.69 2.83
2623 2712 5.411361 TGTTTCATCAAAGTCTATGGTTCCG 59.589 40.000 0.00 0.00 0.00 4.30
2644 2735 0.905357 CCTCTGGGAATCGGACTGTT 59.095 55.000 0.00 0.00 33.58 3.16
2658 2749 7.987458 TGCTACTACTGGATTTAATTTCCTCTG 59.013 37.037 6.54 1.39 34.17 3.35
2741 2832 6.033937 CGATCGAAGCAAATGTATATCATCGT 59.966 38.462 10.26 0.00 35.48 3.73
2742 2833 6.033937 ACGATCGAAGCAAATGTATATCATCG 59.966 38.462 24.34 0.00 35.48 3.84
2882 2973 5.337652 GGGGATAGATAAATCGAAGGTCCAG 60.338 48.000 0.00 0.00 0.00 3.86
2918 3010 1.801913 CGTGCACGTACAGAGCCTC 60.802 63.158 30.50 0.00 35.49 4.70
3074 3166 6.836953 GCAAGTCTTTTGCCTTGTTTAAAAA 58.163 32.000 0.54 0.00 40.13 1.94
3075 3167 6.415798 GCAAGTCTTTTGCCTTGTTTAAAA 57.584 33.333 0.54 0.00 40.13 1.52
3086 3178 4.751098 TCAATGAAATGGCAAGTCTTTTGC 59.249 37.500 3.39 3.39 44.22 3.68
3087 3179 7.429636 AATCAATGAAATGGCAAGTCTTTTG 57.570 32.000 0.00 1.55 0.00 2.44
3088 3180 9.211485 CTTAATCAATGAAATGGCAAGTCTTTT 57.789 29.630 0.00 0.00 0.00 2.27
3089 3181 7.820872 CCTTAATCAATGAAATGGCAAGTCTTT 59.179 33.333 0.00 0.00 0.00 2.52
3090 3182 7.325694 CCTTAATCAATGAAATGGCAAGTCTT 58.674 34.615 0.00 0.00 0.00 3.01
3091 3183 6.127253 CCCTTAATCAATGAAATGGCAAGTCT 60.127 38.462 0.00 0.00 0.00 3.24
3092 3184 6.044682 CCCTTAATCAATGAAATGGCAAGTC 58.955 40.000 0.00 0.00 0.00 3.01
3093 3185 5.721000 TCCCTTAATCAATGAAATGGCAAGT 59.279 36.000 0.00 0.00 0.00 3.16
3094 3186 6.224665 TCCCTTAATCAATGAAATGGCAAG 57.775 37.500 0.00 0.00 0.00 4.01
3095 3187 5.129155 CCTCCCTTAATCAATGAAATGGCAA 59.871 40.000 0.00 0.00 0.00 4.52
3096 3188 4.650588 CCTCCCTTAATCAATGAAATGGCA 59.349 41.667 0.00 0.00 0.00 4.92
3097 3189 4.895297 TCCTCCCTTAATCAATGAAATGGC 59.105 41.667 0.00 0.00 0.00 4.40
3098 3190 6.608808 ACTTCCTCCCTTAATCAATGAAATGG 59.391 38.462 0.00 0.00 0.00 3.16
3099 3191 7.651027 ACTTCCTCCCTTAATCAATGAAATG 57.349 36.000 0.00 0.00 0.00 2.32
3100 3192 8.670521 AAACTTCCTCCCTTAATCAATGAAAT 57.329 30.769 0.00 0.00 0.00 2.17
3101 3193 8.491045 AAAACTTCCTCCCTTAATCAATGAAA 57.509 30.769 0.00 0.00 0.00 2.69
3102 3194 9.243105 CTAAAACTTCCTCCCTTAATCAATGAA 57.757 33.333 0.00 0.00 0.00 2.57
3103 3195 8.611257 TCTAAAACTTCCTCCCTTAATCAATGA 58.389 33.333 0.00 0.00 0.00 2.57
3104 3196 8.678199 GTCTAAAACTTCCTCCCTTAATCAATG 58.322 37.037 0.00 0.00 0.00 2.82
3105 3197 8.390921 TGTCTAAAACTTCCTCCCTTAATCAAT 58.609 33.333 0.00 0.00 0.00 2.57
3106 3198 7.751646 TGTCTAAAACTTCCTCCCTTAATCAA 58.248 34.615 0.00 0.00 0.00 2.57
3107 3199 7.236847 TCTGTCTAAAACTTCCTCCCTTAATCA 59.763 37.037 0.00 0.00 0.00 2.57
3108 3200 7.621796 TCTGTCTAAAACTTCCTCCCTTAATC 58.378 38.462 0.00 0.00 0.00 1.75
3109 3201 7.569599 TCTGTCTAAAACTTCCTCCCTTAAT 57.430 36.000 0.00 0.00 0.00 1.40
3110 3202 7.383156 TTCTGTCTAAAACTTCCTCCCTTAA 57.617 36.000 0.00 0.00 0.00 1.85
3111 3203 7.383156 TTTCTGTCTAAAACTTCCTCCCTTA 57.617 36.000 0.00 0.00 0.00 2.69
3112 3204 5.906772 TTCTGTCTAAAACTTCCTCCCTT 57.093 39.130 0.00 0.00 0.00 3.95
3113 3205 5.906772 TTTCTGTCTAAAACTTCCTCCCT 57.093 39.130 0.00 0.00 0.00 4.20
3114 3206 5.351740 CGATTTCTGTCTAAAACTTCCTCCC 59.648 44.000 0.00 0.00 0.00 4.30
3115 3207 6.164176 TCGATTTCTGTCTAAAACTTCCTCC 58.836 40.000 0.00 0.00 0.00 4.30
3116 3208 7.653767 TTCGATTTCTGTCTAAAACTTCCTC 57.346 36.000 0.00 0.00 0.00 3.71
3117 3209 7.308049 GCTTTCGATTTCTGTCTAAAACTTCCT 60.308 37.037 0.00 0.00 0.00 3.36
3118 3210 6.797513 GCTTTCGATTTCTGTCTAAAACTTCC 59.202 38.462 0.00 0.00 0.00 3.46
3119 3211 6.516695 CGCTTTCGATTTCTGTCTAAAACTTC 59.483 38.462 0.00 0.00 38.10 3.01
3120 3212 6.363473 CGCTTTCGATTTCTGTCTAAAACTT 58.637 36.000 0.00 0.00 38.10 2.66
3121 3213 5.107065 CCGCTTTCGATTTCTGTCTAAAACT 60.107 40.000 0.00 0.00 38.10 2.66
3122 3214 5.080068 CCGCTTTCGATTTCTGTCTAAAAC 58.920 41.667 0.00 0.00 38.10 2.43
3123 3215 4.378046 GCCGCTTTCGATTTCTGTCTAAAA 60.378 41.667 0.00 0.00 38.10 1.52
3124 3216 3.124636 GCCGCTTTCGATTTCTGTCTAAA 59.875 43.478 0.00 0.00 38.10 1.85
3125 3217 2.671396 GCCGCTTTCGATTTCTGTCTAA 59.329 45.455 0.00 0.00 38.10 2.10
3126 3218 2.268298 GCCGCTTTCGATTTCTGTCTA 58.732 47.619 0.00 0.00 38.10 2.59
3127 3219 1.079503 GCCGCTTTCGATTTCTGTCT 58.920 50.000 0.00 0.00 38.10 3.41
3128 3220 0.796312 TGCCGCTTTCGATTTCTGTC 59.204 50.000 0.00 0.00 38.10 3.51
3129 3221 1.234821 TTGCCGCTTTCGATTTCTGT 58.765 45.000 0.00 0.00 38.10 3.41
3130 3222 2.330231 TTTGCCGCTTTCGATTTCTG 57.670 45.000 0.00 0.00 38.10 3.02
3131 3223 4.695217 TTATTTGCCGCTTTCGATTTCT 57.305 36.364 0.00 0.00 38.10 2.52
3132 3224 5.220209 CCTTTTATTTGCCGCTTTCGATTTC 60.220 40.000 0.00 0.00 38.10 2.17
3133 3225 4.625311 CCTTTTATTTGCCGCTTTCGATTT 59.375 37.500 0.00 0.00 38.10 2.17
3134 3226 4.082463 TCCTTTTATTTGCCGCTTTCGATT 60.082 37.500 0.00 0.00 38.10 3.34
3135 3227 3.442273 TCCTTTTATTTGCCGCTTTCGAT 59.558 39.130 0.00 0.00 38.10 3.59
3136 3228 2.814919 TCCTTTTATTTGCCGCTTTCGA 59.185 40.909 0.00 0.00 38.10 3.71
3137 3229 2.914838 GTCCTTTTATTTGCCGCTTTCG 59.085 45.455 0.00 0.00 0.00 3.46
3138 3230 4.174411 AGTCCTTTTATTTGCCGCTTTC 57.826 40.909 0.00 0.00 0.00 2.62
3139 3231 4.765339 AGTAGTCCTTTTATTTGCCGCTTT 59.235 37.500 0.00 0.00 0.00 3.51
3140 3232 4.332828 AGTAGTCCTTTTATTTGCCGCTT 58.667 39.130 0.00 0.00 0.00 4.68
3141 3233 3.939592 GAGTAGTCCTTTTATTTGCCGCT 59.060 43.478 0.00 0.00 0.00 5.52
3142 3234 3.939592 AGAGTAGTCCTTTTATTTGCCGC 59.060 43.478 0.00 0.00 0.00 6.53
3143 3235 4.267928 CGAGAGTAGTCCTTTTATTTGCCG 59.732 45.833 0.00 0.00 0.00 5.69
3144 3236 4.034163 GCGAGAGTAGTCCTTTTATTTGCC 59.966 45.833 0.00 0.00 0.00 4.52
3145 3237 4.259850 CGCGAGAGTAGTCCTTTTATTTGC 60.260 45.833 0.00 0.00 0.00 3.68
3146 3238 4.267928 CCGCGAGAGTAGTCCTTTTATTTG 59.732 45.833 8.23 0.00 0.00 2.32
3147 3239 4.430908 CCGCGAGAGTAGTCCTTTTATTT 58.569 43.478 8.23 0.00 0.00 1.40
3148 3240 3.737355 GCCGCGAGAGTAGTCCTTTTATT 60.737 47.826 8.23 0.00 0.00 1.40
3149 3241 2.223758 GCCGCGAGAGTAGTCCTTTTAT 60.224 50.000 8.23 0.00 0.00 1.40
3150 3242 1.133790 GCCGCGAGAGTAGTCCTTTTA 59.866 52.381 8.23 0.00 0.00 1.52
3151 3243 0.108756 GCCGCGAGAGTAGTCCTTTT 60.109 55.000 8.23 0.00 0.00 2.27
3152 3244 1.248785 TGCCGCGAGAGTAGTCCTTT 61.249 55.000 8.23 0.00 0.00 3.11
3153 3245 1.038130 ATGCCGCGAGAGTAGTCCTT 61.038 55.000 8.23 0.00 0.00 3.36
3154 3246 1.038130 AATGCCGCGAGAGTAGTCCT 61.038 55.000 8.23 0.00 0.00 3.85
3155 3247 0.666913 TAATGCCGCGAGAGTAGTCC 59.333 55.000 8.23 0.00 0.00 3.85
3156 3248 1.065102 TGTAATGCCGCGAGAGTAGTC 59.935 52.381 8.23 0.00 0.00 2.59
3157 3249 1.100510 TGTAATGCCGCGAGAGTAGT 58.899 50.000 8.23 0.00 0.00 2.73
3158 3250 1.852895 GTTGTAATGCCGCGAGAGTAG 59.147 52.381 8.23 0.00 0.00 2.57
3159 3251 1.202817 TGTTGTAATGCCGCGAGAGTA 59.797 47.619 8.23 0.00 0.00 2.59
3160 3252 0.037697 TGTTGTAATGCCGCGAGAGT 60.038 50.000 8.23 0.00 0.00 3.24
3161 3253 0.370273 GTGTTGTAATGCCGCGAGAG 59.630 55.000 8.23 0.00 0.00 3.20
3162 3254 1.017177 GGTGTTGTAATGCCGCGAGA 61.017 55.000 8.23 0.00 0.00 4.04
3163 3255 1.423845 GGTGTTGTAATGCCGCGAG 59.576 57.895 8.23 0.00 0.00 5.03
3164 3256 2.036006 GGGTGTTGTAATGCCGCGA 61.036 57.895 8.23 0.00 0.00 5.87
3165 3257 1.857318 TTGGGTGTTGTAATGCCGCG 61.857 55.000 0.00 0.00 0.00 6.46
3166 3258 0.315568 TTTGGGTGTTGTAATGCCGC 59.684 50.000 0.00 0.00 0.00 6.53
3167 3259 2.029470 ACATTTGGGTGTTGTAATGCCG 60.029 45.455 0.00 0.00 32.58 5.69
3168 3260 3.258123 AGACATTTGGGTGTTGTAATGCC 59.742 43.478 0.00 0.00 32.58 4.40
3169 3261 4.485163 GAGACATTTGGGTGTTGTAATGC 58.515 43.478 0.00 0.00 32.58 3.56
3170 3262 4.722194 CGAGACATTTGGGTGTTGTAATG 58.278 43.478 0.00 0.00 34.87 1.90
3171 3263 3.190535 GCGAGACATTTGGGTGTTGTAAT 59.809 43.478 0.00 0.00 31.16 1.89
3172 3264 2.550606 GCGAGACATTTGGGTGTTGTAA 59.449 45.455 0.00 0.00 31.16 2.41
3173 3265 2.147958 GCGAGACATTTGGGTGTTGTA 58.852 47.619 0.00 0.00 31.16 2.41
3174 3266 0.951558 GCGAGACATTTGGGTGTTGT 59.048 50.000 0.00 0.00 31.16 3.32
3175 3267 1.197721 GAGCGAGACATTTGGGTGTTG 59.802 52.381 0.00 0.00 31.16 3.33
3176 3268 1.523758 GAGCGAGACATTTGGGTGTT 58.476 50.000 0.00 0.00 31.16 3.32
3177 3269 0.321653 GGAGCGAGACATTTGGGTGT 60.322 55.000 0.00 0.00 34.39 4.16
3178 3270 0.321564 TGGAGCGAGACATTTGGGTG 60.322 55.000 0.00 0.00 0.00 4.61
3179 3271 0.036010 CTGGAGCGAGACATTTGGGT 60.036 55.000 0.00 0.00 0.00 4.51
3180 3272 1.372087 GCTGGAGCGAGACATTTGGG 61.372 60.000 0.00 0.00 0.00 4.12
3181 3273 1.372087 GGCTGGAGCGAGACATTTGG 61.372 60.000 0.00 0.00 43.26 3.28
3182 3274 0.674581 TGGCTGGAGCGAGACATTTG 60.675 55.000 0.00 0.00 43.26 2.32
3183 3275 0.254178 ATGGCTGGAGCGAGACATTT 59.746 50.000 0.00 0.00 38.69 2.32
3184 3276 1.069823 CTATGGCTGGAGCGAGACATT 59.930 52.381 6.16 0.00 38.69 2.71
3185 3277 0.678395 CTATGGCTGGAGCGAGACAT 59.322 55.000 6.12 6.12 44.39 3.06
3186 3278 2.021068 GCTATGGCTGGAGCGAGACA 62.021 60.000 0.00 0.00 43.26 3.41
3187 3279 1.300542 GCTATGGCTGGAGCGAGAC 60.301 63.158 0.00 0.00 43.26 3.36
3188 3280 2.502492 GGCTATGGCTGGAGCGAGA 61.502 63.158 0.00 0.00 43.26 4.04
3189 3281 2.030262 GGCTATGGCTGGAGCGAG 59.970 66.667 0.00 0.00 43.26 5.03
3190 3282 3.550431 GGGCTATGGCTGGAGCGA 61.550 66.667 0.00 0.00 43.26 4.93
3191 3283 2.891941 TTTGGGCTATGGCTGGAGCG 62.892 60.000 0.00 0.00 43.26 5.03
3192 3284 1.076777 TTTGGGCTATGGCTGGAGC 60.077 57.895 0.00 0.00 38.73 4.70
3193 3285 1.105759 GCTTTGGGCTATGGCTGGAG 61.106 60.000 0.00 0.00 38.73 3.86
3194 3286 1.076777 GCTTTGGGCTATGGCTGGA 60.077 57.895 0.00 0.00 38.73 3.86
3195 3287 2.484062 CGCTTTGGGCTATGGCTGG 61.484 63.158 0.00 0.00 39.13 4.85
3196 3288 0.820891 ATCGCTTTGGGCTATGGCTG 60.821 55.000 0.00 0.00 39.13 4.85
3197 3289 0.764890 TATCGCTTTGGGCTATGGCT 59.235 50.000 0.00 0.00 39.13 4.75
3198 3290 1.740025 GATATCGCTTTGGGCTATGGC 59.260 52.381 0.00 0.00 39.13 4.40
3199 3291 3.265791 GAGATATCGCTTTGGGCTATGG 58.734 50.000 0.00 0.00 39.13 2.74
3200 3292 3.055530 AGGAGATATCGCTTTGGGCTATG 60.056 47.826 6.41 0.00 39.13 2.23
3201 3293 3.055530 CAGGAGATATCGCTTTGGGCTAT 60.056 47.826 6.41 0.00 39.13 2.97
3202 3294 2.300152 CAGGAGATATCGCTTTGGGCTA 59.700 50.000 6.41 0.00 39.13 3.93
3203 3295 1.071385 CAGGAGATATCGCTTTGGGCT 59.929 52.381 6.41 0.00 39.13 5.19
3204 3296 1.517242 CAGGAGATATCGCTTTGGGC 58.483 55.000 6.41 0.00 37.64 5.36
3205 3297 1.071385 AGCAGGAGATATCGCTTTGGG 59.929 52.381 6.41 0.00 0.00 4.12
3206 3298 2.540265 AGCAGGAGATATCGCTTTGG 57.460 50.000 6.41 0.00 0.00 3.28
3207 3299 3.461061 TCAAGCAGGAGATATCGCTTTG 58.539 45.455 11.49 9.12 42.60 2.77
3208 3300 3.827008 TCAAGCAGGAGATATCGCTTT 57.173 42.857 11.49 0.00 42.60 3.51
3209 3301 4.348863 AATCAAGCAGGAGATATCGCTT 57.651 40.909 9.09 9.09 45.24 4.68
3210 3302 4.348863 AAATCAAGCAGGAGATATCGCT 57.651 40.909 6.41 1.86 35.90 4.93
3211 3303 4.274459 ACAAAATCAAGCAGGAGATATCGC 59.726 41.667 0.00 0.00 0.00 4.58
3212 3304 5.332883 CGACAAAATCAAGCAGGAGATATCG 60.333 44.000 0.00 0.00 0.00 2.92
3213 3305 5.755375 TCGACAAAATCAAGCAGGAGATATC 59.245 40.000 0.00 0.00 0.00 1.63
3214 3306 5.674525 TCGACAAAATCAAGCAGGAGATAT 58.325 37.500 0.00 0.00 0.00 1.63
3215 3307 5.084818 TCGACAAAATCAAGCAGGAGATA 57.915 39.130 0.00 0.00 0.00 1.98
3216 3308 3.942829 TCGACAAAATCAAGCAGGAGAT 58.057 40.909 0.00 0.00 0.00 2.75
3217 3309 3.401033 TCGACAAAATCAAGCAGGAGA 57.599 42.857 0.00 0.00 0.00 3.71
3218 3310 3.686241 TCATCGACAAAATCAAGCAGGAG 59.314 43.478 0.00 0.00 0.00 3.69
3219 3311 3.673902 TCATCGACAAAATCAAGCAGGA 58.326 40.909 0.00 0.00 0.00 3.86
3220 3312 4.348656 CATCATCGACAAAATCAAGCAGG 58.651 43.478 0.00 0.00 0.00 4.85
3221 3313 4.142534 ACCATCATCGACAAAATCAAGCAG 60.143 41.667 0.00 0.00 0.00 4.24
3222 3314 3.758023 ACCATCATCGACAAAATCAAGCA 59.242 39.130 0.00 0.00 0.00 3.91
3223 3315 4.142622 TGACCATCATCGACAAAATCAAGC 60.143 41.667 0.00 0.00 0.00 4.01
3224 3316 5.550232 TGACCATCATCGACAAAATCAAG 57.450 39.130 0.00 0.00 0.00 3.02
3225 3317 5.163632 CCATGACCATCATCGACAAAATCAA 60.164 40.000 0.00 0.00 34.28 2.57
3226 3318 4.336153 CCATGACCATCATCGACAAAATCA 59.664 41.667 0.00 0.00 34.28 2.57
3227 3319 4.576053 TCCATGACCATCATCGACAAAATC 59.424 41.667 0.00 0.00 34.28 2.17
3228 3320 4.525996 TCCATGACCATCATCGACAAAAT 58.474 39.130 0.00 0.00 34.28 1.82
3229 3321 3.949132 TCCATGACCATCATCGACAAAA 58.051 40.909 0.00 0.00 34.28 2.44
3230 3322 3.625649 TCCATGACCATCATCGACAAA 57.374 42.857 0.00 0.00 34.28 2.83
3231 3323 3.534554 CTTCCATGACCATCATCGACAA 58.465 45.455 0.00 0.00 34.28 3.18
3232 3324 2.158914 CCTTCCATGACCATCATCGACA 60.159 50.000 0.00 0.00 34.28 4.35
3233 3325 2.487934 CCTTCCATGACCATCATCGAC 58.512 52.381 0.00 0.00 34.28 4.20
3234 3326 1.417517 CCCTTCCATGACCATCATCGA 59.582 52.381 0.00 0.00 34.28 3.59
3235 3327 1.544093 CCCCTTCCATGACCATCATCG 60.544 57.143 0.00 0.00 34.28 3.84
3236 3328 1.820877 GCCCCTTCCATGACCATCATC 60.821 57.143 0.00 0.00 34.28 2.92
3237 3329 0.186873 GCCCCTTCCATGACCATCAT 59.813 55.000 0.00 0.00 37.65 2.45
3238 3330 1.614711 GCCCCTTCCATGACCATCA 59.385 57.895 0.00 0.00 0.00 3.07
3239 3331 1.152673 GGCCCCTTCCATGACCATC 60.153 63.158 0.00 0.00 0.00 3.51
3240 3332 3.018901 GGCCCCTTCCATGACCAT 58.981 61.111 0.00 0.00 0.00 3.55
3241 3333 3.727258 CGGCCCCTTCCATGACCA 61.727 66.667 0.00 0.00 0.00 4.02
3243 3335 4.115199 AGCGGCCCCTTCCATGAC 62.115 66.667 0.00 0.00 0.00 3.06
3244 3336 4.113815 CAGCGGCCCCTTCCATGA 62.114 66.667 0.00 0.00 0.00 3.07
3245 3337 4.113815 TCAGCGGCCCCTTCCATG 62.114 66.667 0.00 0.00 0.00 3.66
3246 3338 3.801997 CTCAGCGGCCCCTTCCAT 61.802 66.667 0.00 0.00 0.00 3.41
3248 3340 2.666098 TAACTCAGCGGCCCCTTCC 61.666 63.158 0.00 0.00 0.00 3.46
3249 3341 1.449778 GTAACTCAGCGGCCCCTTC 60.450 63.158 0.00 0.00 0.00 3.46
3250 3342 2.669240 GTAACTCAGCGGCCCCTT 59.331 61.111 0.00 0.00 0.00 3.95
3251 3343 3.771160 CGTAACTCAGCGGCCCCT 61.771 66.667 0.00 0.00 0.00 4.79
3252 3344 2.791501 TTTCGTAACTCAGCGGCCCC 62.792 60.000 0.00 0.00 0.00 5.80
3253 3345 1.359459 CTTTCGTAACTCAGCGGCCC 61.359 60.000 0.00 0.00 0.00 5.80
3254 3346 0.389426 TCTTTCGTAACTCAGCGGCC 60.389 55.000 0.00 0.00 0.00 6.13
3255 3347 0.714439 GTCTTTCGTAACTCAGCGGC 59.286 55.000 0.00 0.00 0.00 6.53
3256 3348 2.095161 AGAGTCTTTCGTAACTCAGCGG 60.095 50.000 5.42 0.00 43.52 5.52
3257 3349 3.204597 AGAGTCTTTCGTAACTCAGCG 57.795 47.619 5.42 0.00 43.52 5.18
3258 3350 4.099824 GCTAGAGTCTTTCGTAACTCAGC 58.900 47.826 0.00 7.81 43.52 4.26
3259 3351 5.298197 TGCTAGAGTCTTTCGTAACTCAG 57.702 43.478 0.00 2.65 43.52 3.35
3260 3352 5.899120 ATGCTAGAGTCTTTCGTAACTCA 57.101 39.130 0.00 0.00 43.52 3.41
3261 3353 5.004916 GCAATGCTAGAGTCTTTCGTAACTC 59.995 44.000 0.00 0.00 41.81 3.01
3262 3354 4.865365 GCAATGCTAGAGTCTTTCGTAACT 59.135 41.667 0.00 0.00 0.00 2.24
3263 3355 4.259451 CGCAATGCTAGAGTCTTTCGTAAC 60.259 45.833 2.94 0.00 0.00 2.50
3264 3356 3.857665 CGCAATGCTAGAGTCTTTCGTAA 59.142 43.478 2.94 0.00 0.00 3.18
3265 3357 3.435566 CGCAATGCTAGAGTCTTTCGTA 58.564 45.455 2.94 0.00 0.00 3.43
3266 3358 2.263077 CGCAATGCTAGAGTCTTTCGT 58.737 47.619 2.94 0.00 0.00 3.85
3267 3359 2.986842 CGCAATGCTAGAGTCTTTCG 57.013 50.000 2.94 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.