Multiple sequence alignment - TraesCS7B01G145900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G145900 | chr7B | 100.000 | 6059 | 0 | 0 | 484 | 6542 | 189712826 | 189718884 | 0.000000e+00 | 11189.0 |
1 | TraesCS7B01G145900 | chr7B | 100.000 | 322 | 0 | 0 | 1 | 322 | 189712343 | 189712664 | 4.370000e-166 | 595.0 |
2 | TraesCS7B01G145900 | chr7B | 92.971 | 313 | 20 | 2 | 6230 | 6542 | 189759240 | 189759550 | 7.730000e-124 | 455.0 |
3 | TraesCS7B01G145900 | chr7B | 96.703 | 182 | 4 | 2 | 3816 | 3996 | 220990623 | 220990803 | 1.070000e-77 | 302.0 |
4 | TraesCS7B01G145900 | chr7D | 97.165 | 3951 | 84 | 14 | 2172 | 6109 | 211872661 | 211868726 | 0.000000e+00 | 6650.0 |
5 | TraesCS7B01G145900 | chr7D | 96.995 | 1531 | 28 | 5 | 648 | 2173 | 211874216 | 211872699 | 0.000000e+00 | 2556.0 |
6 | TraesCS7B01G145900 | chr7D | 97.643 | 297 | 7 | 0 | 24 | 320 | 211874654 | 211874358 | 1.630000e-140 | 510.0 |
7 | TraesCS7B01G145900 | chr7D | 94.277 | 332 | 16 | 3 | 6211 | 6542 | 211868146 | 211867818 | 7.570000e-139 | 505.0 |
8 | TraesCS7B01G145900 | chr7D | 94.241 | 191 | 9 | 2 | 3796 | 3984 | 426750082 | 426750272 | 2.310000e-74 | 291.0 |
9 | TraesCS7B01G145900 | chr7D | 98.684 | 152 | 1 | 1 | 484 | 634 | 211874352 | 211874201 | 1.080000e-67 | 268.0 |
10 | TraesCS7B01G145900 | chr7D | 97.115 | 104 | 3 | 0 | 6124 | 6227 | 211868580 | 211868477 | 6.740000e-40 | 176.0 |
11 | TraesCS7B01G145900 | chr7D | 97.260 | 73 | 2 | 0 | 22 | 94 | 211874723 | 211874651 | 2.480000e-24 | 124.0 |
12 | TraesCS7B01G145900 | chr7D | 85.321 | 109 | 15 | 1 | 6124 | 6231 | 349252243 | 349252135 | 1.930000e-20 | 111.0 |
13 | TraesCS7B01G145900 | chr7D | 86.598 | 97 | 13 | 0 | 6120 | 6216 | 116853401 | 116853305 | 2.490000e-19 | 108.0 |
14 | TraesCS7B01G145900 | chr7A | 97.617 | 1888 | 35 | 7 | 2172 | 4053 | 223679194 | 223677311 | 0.000000e+00 | 3229.0 |
15 | TraesCS7B01G145900 | chr7A | 96.938 | 1731 | 29 | 5 | 4095 | 5818 | 223677038 | 223675325 | 0.000000e+00 | 2881.0 |
16 | TraesCS7B01G145900 | chr7A | 96.734 | 1041 | 24 | 5 | 657 | 1695 | 223680826 | 223679794 | 0.000000e+00 | 1725.0 |
17 | TraesCS7B01G145900 | chr7A | 98.125 | 480 | 9 | 0 | 1694 | 2173 | 223679711 | 223679232 | 0.000000e+00 | 837.0 |
18 | TraesCS7B01G145900 | chr7A | 94.749 | 419 | 20 | 2 | 6124 | 6542 | 223674902 | 223674486 | 0.000000e+00 | 651.0 |
19 | TraesCS7B01G145900 | chr7A | 96.085 | 281 | 11 | 0 | 41 | 321 | 223681245 | 223680965 | 5.980000e-125 | 459.0 |
20 | TraesCS7B01G145900 | chr7A | 97.761 | 134 | 2 | 1 | 484 | 616 | 223680959 | 223680826 | 5.100000e-56 | 230.0 |
21 | TraesCS7B01G145900 | chr7A | 85.577 | 104 | 15 | 0 | 6124 | 6227 | 372913065 | 372912962 | 6.940000e-20 | 110.0 |
22 | TraesCS7B01G145900 | chr7A | 85.577 | 104 | 15 | 0 | 6124 | 6227 | 372943202 | 372943099 | 6.940000e-20 | 110.0 |
23 | TraesCS7B01G145900 | chr7A | 100.000 | 44 | 0 | 0 | 4051 | 4094 | 223677188 | 223677145 | 1.510000e-11 | 82.4 |
24 | TraesCS7B01G145900 | chr5B | 96.450 | 338 | 11 | 1 | 3652 | 3989 | 528265605 | 528265269 | 2.060000e-154 | 556.0 |
25 | TraesCS7B01G145900 | chr5B | 97.191 | 178 | 5 | 0 | 3816 | 3993 | 548726918 | 548727095 | 1.070000e-77 | 302.0 |
26 | TraesCS7B01G145900 | chr3A | 90.411 | 292 | 26 | 2 | 6251 | 6542 | 440490189 | 440489900 | 3.700000e-102 | 383.0 |
27 | TraesCS7B01G145900 | chr3A | 86.014 | 286 | 33 | 7 | 6254 | 6537 | 628435397 | 628435677 | 3.830000e-77 | 300.0 |
28 | TraesCS7B01G145900 | chr4A | 88.350 | 309 | 28 | 3 | 6230 | 6538 | 282103895 | 282104195 | 1.340000e-96 | 364.0 |
29 | TraesCS7B01G145900 | chr4A | 81.905 | 315 | 46 | 10 | 6230 | 6542 | 550542481 | 550542786 | 8.420000e-64 | 255.0 |
30 | TraesCS7B01G145900 | chr1A | 92.342 | 222 | 7 | 9 | 3802 | 4018 | 50339307 | 50339523 | 2.290000e-79 | 307.0 |
31 | TraesCS7B01G145900 | chr4B | 95.676 | 185 | 7 | 1 | 3803 | 3986 | 78609330 | 78609146 | 4.960000e-76 | 296.0 |
32 | TraesCS7B01G145900 | chr4B | 80.255 | 314 | 50 | 10 | 6231 | 6541 | 69294441 | 69294137 | 6.600000e-55 | 226.0 |
33 | TraesCS7B01G145900 | chr4B | 100.000 | 28 | 0 | 0 | 2 | 29 | 74862371 | 74862344 | 1.200000e-02 | 52.8 |
34 | TraesCS7B01G145900 | chr1B | 95.652 | 184 | 6 | 2 | 3815 | 3998 | 115751704 | 115751523 | 1.780000e-75 | 294.0 |
35 | TraesCS7B01G145900 | chr2D | 83.013 | 312 | 39 | 9 | 6230 | 6535 | 98765148 | 98764845 | 3.010000e-68 | 270.0 |
36 | TraesCS7B01G145900 | chr6D | 89.524 | 105 | 11 | 0 | 6123 | 6227 | 26447150 | 26447046 | 4.120000e-27 | 134.0 |
37 | TraesCS7B01G145900 | chr2A | 87.500 | 104 | 13 | 0 | 6124 | 6227 | 85430838 | 85430735 | 3.200000e-23 | 121.0 |
38 | TraesCS7B01G145900 | chr5A | 86.667 | 105 | 12 | 2 | 6124 | 6227 | 207517051 | 207517154 | 1.490000e-21 | 115.0 |
39 | TraesCS7B01G145900 | chr2B | 100.000 | 28 | 0 | 0 | 1 | 28 | 73957694 | 73957721 | 1.200000e-02 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G145900 | chr7B | 189712343 | 189718884 | 6541 | False | 5892.000000 | 11189 | 100.000000 | 1 | 6542 | 2 | chr7B.!!$F3 | 6541 |
1 | TraesCS7B01G145900 | chr7D | 211867818 | 211874723 | 6905 | True | 1541.285714 | 6650 | 97.019857 | 22 | 6542 | 7 | chr7D.!!$R3 | 6520 |
2 | TraesCS7B01G145900 | chr7A | 223674486 | 223681245 | 6759 | True | 1261.800000 | 3229 | 97.251125 | 41 | 6542 | 8 | chr7A.!!$R3 | 6501 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
275 | 343 | 0.935898 | TCGTAGTCTCTCGATTCGCC | 59.064 | 55.000 | 0.0 | 0.0 | 0.00 | 5.54 | F |
1730 | 1888 | 0.665835 | TCATTTCCACCGTGTTGTGC | 59.334 | 50.000 | 0.0 | 0.0 | 34.85 | 4.57 | F |
2764 | 2961 | 3.877508 | GGACCACAACTATGAGCAATACC | 59.122 | 47.826 | 0.0 | 0.0 | 0.00 | 2.73 | F |
3153 | 3351 | 1.214175 | TGCCTCAAGAGAAAACCACCA | 59.786 | 47.619 | 0.0 | 0.0 | 0.00 | 4.17 | F |
3973 | 4173 | 0.817229 | GGAGCTTCTATGCACTGGGC | 60.817 | 60.000 | 0.0 | 0.0 | 45.13 | 5.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2014 | 2172 | 6.034256 | GCACGTCAACAAGAATTACTACGTAT | 59.966 | 38.462 | 0.0 | 0.0 | 40.01 | 3.06 | R |
3153 | 3351 | 1.896465 | CTTCTCCTCGGTCTGTTCCTT | 59.104 | 52.381 | 0.0 | 0.0 | 0.00 | 3.36 | R |
3849 | 4049 | 2.037772 | CAGGACCTCTTAGCACAAGTGT | 59.962 | 50.000 | 0.0 | 0.0 | 0.00 | 3.55 | R |
4299 | 4735 | 6.098838 | ACACATGCTCTATTCCAGATGTTAGA | 59.901 | 38.462 | 0.0 | 0.0 | 31.13 | 2.10 | R |
5654 | 6094 | 0.941542 | TGGCTAGTGACAACAAACGC | 59.058 | 50.000 | 0.0 | 0.0 | 0.00 | 4.84 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 3.946308 | GCTCGTTAATTAGTTGCTCCC | 57.054 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
84 | 85 | 4.802051 | GGCCCAGATGAGCGCCAA | 62.802 | 66.667 | 2.29 | 0.00 | 41.25 | 4.52 |
128 | 196 | 0.983378 | AGAGGTTTCCATCCCCGGAG | 60.983 | 60.000 | 0.73 | 0.00 | 36.12 | 4.63 |
275 | 343 | 0.935898 | TCGTAGTCTCTCGATTCGCC | 59.064 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
313 | 381 | 1.318576 | CGGTGAAAAGTTTGCCCTCT | 58.681 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
634 | 703 | 6.761312 | TGGAATGATGCAATTCTTTGACTTT | 58.239 | 32.000 | 10.23 | 0.00 | 36.87 | 2.66 |
635 | 704 | 7.218614 | TGGAATGATGCAATTCTTTGACTTTT | 58.781 | 30.769 | 10.23 | 0.00 | 36.87 | 2.27 |
636 | 705 | 7.716123 | TGGAATGATGCAATTCTTTGACTTTTT | 59.284 | 29.630 | 10.23 | 0.00 | 36.87 | 1.94 |
746 | 815 | 3.441500 | GGAGGTTTTCCAGATTGAGGT | 57.558 | 47.619 | 0.00 | 0.00 | 46.01 | 3.85 |
769 | 838 | 7.039993 | AGGTTGGTTGAAATGATAAACTGGTAC | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
771 | 840 | 9.005777 | GTTGGTTGAAATGATAAACTGGTACTA | 57.994 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
870 | 939 | 4.640771 | TGTTTCCTTATGTTCTGCTCCT | 57.359 | 40.909 | 0.00 | 0.00 | 0.00 | 3.69 |
871 | 940 | 4.985538 | TGTTTCCTTATGTTCTGCTCCTT | 58.014 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
910 | 979 | 3.094572 | AGCAGGACTTTTTGATGGATGG | 58.905 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
911 | 980 | 3.091545 | GCAGGACTTTTTGATGGATGGA | 58.908 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1262 | 1334 | 5.123186 | TCGCCAAGTGGTTCAAGTTATATTG | 59.877 | 40.000 | 0.00 | 0.00 | 37.57 | 1.90 |
1267 | 1339 | 7.362834 | CCAAGTGGTTCAAGTTATATTGCATCA | 60.363 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
1370 | 1442 | 2.103263 | CCACCTATCTAACTGGCCTGTC | 59.897 | 54.545 | 16.45 | 0.00 | 0.00 | 3.51 |
1676 | 1750 | 8.674263 | ATCTTTATTTCCAGATTGCAGAGTAG | 57.326 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
1721 | 1879 | 4.918588 | TCTTAACCCTTCTCATTTCCACC | 58.081 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
1730 | 1888 | 0.665835 | TCATTTCCACCGTGTTGTGC | 59.334 | 50.000 | 0.00 | 0.00 | 34.85 | 4.57 |
2013 | 2171 | 7.657336 | TGAAAAGTGACTGGAATGGTAAATTC | 58.343 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
2014 | 2172 | 7.286546 | TGAAAAGTGACTGGAATGGTAAATTCA | 59.713 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2302 | 2499 | 6.074648 | ACAAACTGTGGGATCCATCTTTAAA | 58.925 | 36.000 | 15.23 | 0.00 | 35.28 | 1.52 |
2677 | 2874 | 7.453838 | CACTAGTTTGGCTCGTAGTTTTTATC | 58.546 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
2764 | 2961 | 3.877508 | GGACCACAACTATGAGCAATACC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
3014 | 3212 | 6.333416 | TCAACATATTGACTCTTCCGAAGAG | 58.667 | 40.000 | 29.09 | 29.09 | 45.81 | 2.85 |
3114 | 3312 | 7.764443 | GTGAAACCATAGAGAATGTAACAGCTA | 59.236 | 37.037 | 0.00 | 0.00 | 33.34 | 3.32 |
3117 | 3315 | 5.363868 | ACCATAGAGAATGTAACAGCTAGCA | 59.636 | 40.000 | 18.83 | 0.00 | 33.34 | 3.49 |
3118 | 3316 | 5.694006 | CCATAGAGAATGTAACAGCTAGCAC | 59.306 | 44.000 | 18.83 | 6.74 | 33.34 | 4.40 |
3119 | 3317 | 4.808414 | AGAGAATGTAACAGCTAGCACA | 57.192 | 40.909 | 18.83 | 12.81 | 0.00 | 4.57 |
3153 | 3351 | 1.214175 | TGCCTCAAGAGAAAACCACCA | 59.786 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
3244 | 3442 | 2.165030 | GCCTTCTGCAAGCATTACACAT | 59.835 | 45.455 | 0.00 | 0.00 | 40.77 | 3.21 |
3296 | 3494 | 6.327887 | TGCCAGGAAGTATATTGTGGTATGTA | 59.672 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
3297 | 3495 | 7.017155 | TGCCAGGAAGTATATTGTGGTATGTAT | 59.983 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
3298 | 3496 | 8.537016 | GCCAGGAAGTATATTGTGGTATGTATA | 58.463 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
3342 | 3540 | 8.408043 | TGATGAACAATTTGTTATTCTGTCCT | 57.592 | 30.769 | 14.49 | 0.00 | 41.28 | 3.85 |
3408 | 3608 | 8.867935 | GGTCATATGATTGAGATGAGTTATTCG | 58.132 | 37.037 | 9.02 | 0.00 | 32.86 | 3.34 |
3422 | 3622 | 6.338146 | TGAGTTATTCGCACAGCTTTATACT | 58.662 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3520 | 3720 | 7.972277 | GCATTGCTTTGAGAAAATAGATCTTGA | 59.028 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
3849 | 4049 | 1.754745 | GCAGTGGTGAAGTCCTCCA | 59.245 | 57.895 | 0.00 | 0.00 | 36.17 | 3.86 |
3899 | 4099 | 1.378250 | AGCCTCTCTGCATTGCACC | 60.378 | 57.895 | 7.38 | 0.00 | 33.79 | 5.01 |
3973 | 4173 | 0.817229 | GGAGCTTCTATGCACTGGGC | 60.817 | 60.000 | 0.00 | 0.00 | 45.13 | 5.36 |
4100 | 4536 | 5.358160 | GCCCTTTAAGTAAGCAGAACATGAT | 59.642 | 40.000 | 0.00 | 0.00 | 32.19 | 2.45 |
4137 | 4573 | 9.420551 | AGGATTTCTAAGAAGTTAACTTACACG | 57.579 | 33.333 | 20.58 | 10.12 | 36.11 | 4.49 |
4299 | 4735 | 5.373222 | TGGTACAAAAGTGCTACACTCATT | 58.627 | 37.500 | 0.00 | 0.00 | 38.82 | 2.57 |
4339 | 4775 | 1.225855 | TGTGTGATTGAAGGTCGTGC | 58.774 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
5469 | 5908 | 1.886542 | GGCGGAGTCATTGAAAACCTT | 59.113 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
5606 | 6046 | 1.064758 | TCTGGTTCAGGCTTGTTGTGT | 60.065 | 47.619 | 0.00 | 0.00 | 31.51 | 3.72 |
5612 | 6052 | 2.997980 | TCAGGCTTGTTGTGTTTCAGA | 58.002 | 42.857 | 0.00 | 0.00 | 0.00 | 3.27 |
5654 | 6094 | 1.849219 | GTTCTCTCAATGCGCTACTCG | 59.151 | 52.381 | 9.73 | 0.00 | 42.12 | 4.18 |
5670 | 6110 | 2.124903 | ACTCGCGTTTGTTGTCACTAG | 58.875 | 47.619 | 5.77 | 0.00 | 0.00 | 2.57 |
5719 | 6159 | 1.832167 | GTGAGGCTTTTGGTGGGCA | 60.832 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
5736 | 6176 | 2.186076 | GGCACTTGAGTCTCGTATTCG | 58.814 | 52.381 | 0.00 | 0.00 | 38.55 | 3.34 |
5801 | 6241 | 7.520798 | ACAGATGGTTGATAATGATATGGTGT | 58.479 | 34.615 | 0.00 | 0.00 | 0.00 | 4.16 |
5802 | 6242 | 8.000709 | ACAGATGGTTGATAATGATATGGTGTT | 58.999 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
5866 | 6306 | 4.699522 | GAAACTGCCTCGCCCGGT | 62.700 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
5907 | 6347 | 3.745797 | GCACCTCCTAGGAATCATCAACC | 60.746 | 52.174 | 13.77 | 0.00 | 37.67 | 3.77 |
5910 | 6350 | 3.048600 | CTCCTAGGAATCATCAACCCCA | 58.951 | 50.000 | 13.77 | 0.00 | 0.00 | 4.96 |
6012 | 6457 | 0.984230 | GGAGGGAGGTTGACATCACA | 59.016 | 55.000 | 0.63 | 0.00 | 31.50 | 3.58 |
6087 | 6532 | 1.681793 | AGCTTTCTCCGCGCTATTCTA | 59.318 | 47.619 | 5.56 | 0.00 | 31.12 | 2.10 |
6121 | 6602 | 6.368791 | TCAAGTACACACTATGTTTGCTCATC | 59.631 | 38.462 | 0.00 | 0.00 | 43.19 | 2.92 |
6234 | 7184 | 9.588096 | TTAGAGATACCTATTCTGCTATCACAA | 57.412 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
6263 | 7213 | 6.980593 | AGATTGTTGCTTGTAAATAGTTGCA | 58.019 | 32.000 | 0.00 | 0.00 | 0.00 | 4.08 |
6265 | 7215 | 8.090214 | AGATTGTTGCTTGTAAATAGTTGCATT | 58.910 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
6436 | 7386 | 2.162608 | GGTTTTGTGCCCAACCAAAAAC | 59.837 | 45.455 | 0.00 | 0.00 | 41.97 | 2.43 |
6444 | 7394 | 2.223947 | GCCCAACCAAAAACGATGAACT | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.532542 | AGGGAGCAACTAATTAACGAGC | 58.467 | 45.455 | 0.00 | 0.00 | 0.00 | 5.03 |
2 | 3 | 4.901868 | ACAAGGGAGCAACTAATTAACGA | 58.098 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
106 | 174 | 0.179000 | CGGGGATGGAAACCTCTCAG | 59.821 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
128 | 196 | 3.447025 | CTGGACGGATCGGGAAGCC | 62.447 | 68.421 | 5.18 | 1.76 | 0.00 | 4.35 |
637 | 706 | 7.903995 | AGTCAAAGAATTGCAACTTCAAAAA | 57.096 | 28.000 | 17.89 | 4.66 | 36.45 | 1.94 |
638 | 707 | 7.818930 | AGAAGTCAAAGAATTGCAACTTCAAAA | 59.181 | 29.630 | 20.11 | 5.00 | 44.68 | 2.44 |
639 | 708 | 7.322664 | AGAAGTCAAAGAATTGCAACTTCAAA | 58.677 | 30.769 | 20.11 | 2.15 | 44.68 | 2.69 |
640 | 709 | 6.866480 | AGAAGTCAAAGAATTGCAACTTCAA | 58.134 | 32.000 | 20.11 | 4.09 | 44.68 | 2.69 |
641 | 710 | 6.319658 | AGAGAAGTCAAAGAATTGCAACTTCA | 59.680 | 34.615 | 20.11 | 3.04 | 44.68 | 3.02 |
642 | 711 | 6.733145 | AGAGAAGTCAAAGAATTGCAACTTC | 58.267 | 36.000 | 13.33 | 13.33 | 43.69 | 3.01 |
643 | 712 | 6.705863 | AGAGAAGTCAAAGAATTGCAACTT | 57.294 | 33.333 | 0.00 | 0.00 | 36.71 | 2.66 |
644 | 713 | 6.705863 | AAGAGAAGTCAAAGAATTGCAACT | 57.294 | 33.333 | 0.00 | 0.00 | 36.45 | 3.16 |
645 | 714 | 9.122613 | GAATAAGAGAAGTCAAAGAATTGCAAC | 57.877 | 33.333 | 0.00 | 0.00 | 36.45 | 4.17 |
646 | 715 | 9.071276 | AGAATAAGAGAAGTCAAAGAATTGCAA | 57.929 | 29.630 | 0.00 | 0.00 | 36.45 | 4.08 |
647 | 716 | 8.627208 | AGAATAAGAGAAGTCAAAGAATTGCA | 57.373 | 30.769 | 0.00 | 0.00 | 36.45 | 4.08 |
652 | 721 | 9.088512 | GCGAATAGAATAAGAGAAGTCAAAGAA | 57.911 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
653 | 722 | 7.432545 | CGCGAATAGAATAAGAGAAGTCAAAGA | 59.567 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
654 | 723 | 7.221067 | ACGCGAATAGAATAAGAGAAGTCAAAG | 59.779 | 37.037 | 15.93 | 0.00 | 0.00 | 2.77 |
655 | 724 | 7.009265 | CACGCGAATAGAATAAGAGAAGTCAAA | 59.991 | 37.037 | 15.93 | 0.00 | 0.00 | 2.69 |
656 | 725 | 6.472486 | CACGCGAATAGAATAAGAGAAGTCAA | 59.528 | 38.462 | 15.93 | 0.00 | 0.00 | 3.18 |
743 | 812 | 5.838521 | ACCAGTTTATCATTTCAACCAACCT | 59.161 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
746 | 815 | 9.747898 | ATAGTACCAGTTTATCATTTCAACCAA | 57.252 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
769 | 838 | 8.432805 | ACACAAATCATAACCCTCTTAGGATAG | 58.567 | 37.037 | 0.00 | 0.00 | 37.67 | 2.08 |
771 | 840 | 7.213178 | ACACAAATCATAACCCTCTTAGGAT | 57.787 | 36.000 | 0.00 | 0.00 | 37.67 | 3.24 |
870 | 939 | 2.297033 | GCTGCATTCAAACTTCTGGGAA | 59.703 | 45.455 | 0.00 | 0.00 | 0.00 | 3.97 |
871 | 940 | 1.888512 | GCTGCATTCAAACTTCTGGGA | 59.111 | 47.619 | 0.00 | 0.00 | 0.00 | 4.37 |
910 | 979 | 5.646577 | ATAGACCGGTAGAGCAATACATC | 57.353 | 43.478 | 7.34 | 0.00 | 0.00 | 3.06 |
911 | 980 | 7.147880 | GGAATATAGACCGGTAGAGCAATACAT | 60.148 | 40.741 | 7.34 | 0.00 | 0.00 | 2.29 |
1169 | 1241 | 6.371825 | GGAAGCATGTTATAGGGTTATACTGC | 59.628 | 42.308 | 0.00 | 0.00 | 29.98 | 4.40 |
1653 | 1727 | 7.856145 | ACTACTCTGCAATCTGGAAATAAAG | 57.144 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
1792 | 1950 | 8.557864 | CATTAGCATGTTTAGATTCTCTTCCTG | 58.442 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
2013 | 2171 | 7.381079 | CACGTCAACAAGAATTACTACGTATG | 58.619 | 38.462 | 0.00 | 0.00 | 40.01 | 2.39 |
2014 | 2172 | 6.034256 | GCACGTCAACAAGAATTACTACGTAT | 59.966 | 38.462 | 0.00 | 0.00 | 40.01 | 3.06 |
2315 | 2512 | 7.716799 | AGGCCAACTCATAAATTTATCAACA | 57.283 | 32.000 | 5.01 | 0.00 | 0.00 | 3.33 |
2677 | 2874 | 7.144722 | TGTACATCTTTGGCAAGATTACTTG | 57.855 | 36.000 | 0.00 | 0.00 | 46.07 | 3.16 |
2764 | 2961 | 2.029838 | ATCCTGCCTTTAGTGCTTCG | 57.970 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2945 | 3143 | 8.944029 | GGATCTTCAATAACCATGTCATCATAG | 58.056 | 37.037 | 0.00 | 0.00 | 32.47 | 2.23 |
3114 | 3312 | 2.669391 | GCAAATTTAGCTCGCTTGTGCT | 60.669 | 45.455 | 0.00 | 0.00 | 44.17 | 4.40 |
3117 | 3315 | 2.162408 | GAGGCAAATTTAGCTCGCTTGT | 59.838 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3118 | 3316 | 2.162208 | TGAGGCAAATTTAGCTCGCTTG | 59.838 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
3119 | 3317 | 2.436417 | TGAGGCAAATTTAGCTCGCTT | 58.564 | 42.857 | 0.00 | 0.00 | 0.00 | 4.68 |
3153 | 3351 | 1.896465 | CTTCTCCTCGGTCTGTTCCTT | 59.104 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
3244 | 3442 | 6.168389 | GGGAGGTCTTTATCTTTTACGTTCA | 58.832 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3342 | 3540 | 5.070446 | AGTGTCACATGAACCTACTCAGAAA | 59.930 | 40.000 | 5.62 | 0.00 | 0.00 | 2.52 |
3408 | 3608 | 4.748892 | TGAGACTCAGTATAAAGCTGTGC | 58.251 | 43.478 | 0.00 | 0.00 | 35.60 | 4.57 |
3422 | 3622 | 6.826668 | TCAAAAGACTTGGTAATGAGACTCA | 58.173 | 36.000 | 7.80 | 7.80 | 0.00 | 3.41 |
3849 | 4049 | 2.037772 | CAGGACCTCTTAGCACAAGTGT | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3899 | 4099 | 2.188817 | ACCTAGTCTTACCCCTGCAAG | 58.811 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
4100 | 4536 | 7.905106 | ACTTCTTAGAAATCCTTAGGAACCCTA | 59.095 | 37.037 | 4.56 | 4.08 | 34.34 | 3.53 |
4137 | 4573 | 7.285401 | TGGAAGATGAATAAATCAAACCCTAGC | 59.715 | 37.037 | 0.00 | 0.00 | 42.54 | 3.42 |
4299 | 4735 | 6.098838 | ACACATGCTCTATTCCAGATGTTAGA | 59.901 | 38.462 | 0.00 | 0.00 | 31.13 | 2.10 |
4375 | 4814 | 9.194271 | GACTCTTTCTAAATCTTACAAGTTCGT | 57.806 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
5469 | 5908 | 1.444119 | GGTCAACGAGGTGCTTTGCA | 61.444 | 55.000 | 0.00 | 0.00 | 35.60 | 4.08 |
5606 | 6046 | 6.918626 | TCACATTTTCACAACAAGTCTGAAA | 58.081 | 32.000 | 3.26 | 3.26 | 33.17 | 2.69 |
5612 | 6052 | 7.818930 | AGAACATTTCACATTTTCACAACAAGT | 59.181 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
5654 | 6094 | 0.941542 | TGGCTAGTGACAACAAACGC | 59.058 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
5670 | 6110 | 4.183101 | CAAACACCATATTGTCCAATGGC | 58.817 | 43.478 | 0.00 | 0.00 | 45.53 | 4.40 |
5719 | 6159 | 4.215827 | AGTTCACGAATACGAGACTCAAGT | 59.784 | 41.667 | 2.82 | 0.00 | 42.66 | 3.16 |
5736 | 6176 | 6.252281 | TGTTTTGACGTCACAATTAGTTCAC | 58.748 | 36.000 | 19.90 | 4.87 | 0.00 | 3.18 |
5802 | 6242 | 8.992073 | CGAGATCATTTTGTCACCATATCATTA | 58.008 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
5910 | 6350 | 2.091283 | AAACCCTGTCCAGCCCCTT | 61.091 | 57.895 | 0.00 | 0.00 | 0.00 | 3.95 |
5948 | 6393 | 3.244284 | TGGTCGGACCCCATTTATTATCG | 60.244 | 47.826 | 23.81 | 0.00 | 37.50 | 2.92 |
5990 | 6435 | 0.833949 | GATGTCAACCTCCCTCCCTC | 59.166 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5991 | 6436 | 0.119155 | TGATGTCAACCTCCCTCCCT | 59.881 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5992 | 6437 | 0.253327 | GTGATGTCAACCTCCCTCCC | 59.747 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5993 | 6438 | 0.984230 | TGTGATGTCAACCTCCCTCC | 59.016 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6012 | 6457 | 1.635663 | CGGCGAAAATCAAGGCGTCT | 61.636 | 55.000 | 0.00 | 0.00 | 46.52 | 4.18 |
6087 | 6532 | 6.936900 | ACATAGTGTGTACTTGAAAATGCTCT | 59.063 | 34.615 | 0.00 | 0.00 | 39.91 | 4.09 |
6159 | 6762 | 1.486726 | CTGCCGGTAATCTCCCTCTTT | 59.513 | 52.381 | 1.90 | 0.00 | 0.00 | 2.52 |
6228 | 7178 | 4.307032 | AGCAACAATCTAGGGTTGTGAT | 57.693 | 40.909 | 17.87 | 9.01 | 44.70 | 3.06 |
6234 | 7184 | 7.402862 | ACTATTTACAAGCAACAATCTAGGGT | 58.597 | 34.615 | 0.00 | 0.00 | 0.00 | 4.34 |
6263 | 7213 | 8.809468 | AAATATGATGCATGATGCTCTCTAAT | 57.191 | 30.769 | 19.19 | 1.93 | 45.31 | 1.73 |
6265 | 7215 | 9.901172 | ATTAAATATGATGCATGATGCTCTCTA | 57.099 | 29.630 | 19.19 | 5.97 | 45.31 | 2.43 |
6320 | 7270 | 7.393234 | GCCCTTTATTTAAAATTTGGAGGCTTT | 59.607 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.