Multiple sequence alignment - TraesCS7B01G145900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G145900 chr7B 100.000 6059 0 0 484 6542 189712826 189718884 0.000000e+00 11189.0
1 TraesCS7B01G145900 chr7B 100.000 322 0 0 1 322 189712343 189712664 4.370000e-166 595.0
2 TraesCS7B01G145900 chr7B 92.971 313 20 2 6230 6542 189759240 189759550 7.730000e-124 455.0
3 TraesCS7B01G145900 chr7B 96.703 182 4 2 3816 3996 220990623 220990803 1.070000e-77 302.0
4 TraesCS7B01G145900 chr7D 97.165 3951 84 14 2172 6109 211872661 211868726 0.000000e+00 6650.0
5 TraesCS7B01G145900 chr7D 96.995 1531 28 5 648 2173 211874216 211872699 0.000000e+00 2556.0
6 TraesCS7B01G145900 chr7D 97.643 297 7 0 24 320 211874654 211874358 1.630000e-140 510.0
7 TraesCS7B01G145900 chr7D 94.277 332 16 3 6211 6542 211868146 211867818 7.570000e-139 505.0
8 TraesCS7B01G145900 chr7D 94.241 191 9 2 3796 3984 426750082 426750272 2.310000e-74 291.0
9 TraesCS7B01G145900 chr7D 98.684 152 1 1 484 634 211874352 211874201 1.080000e-67 268.0
10 TraesCS7B01G145900 chr7D 97.115 104 3 0 6124 6227 211868580 211868477 6.740000e-40 176.0
11 TraesCS7B01G145900 chr7D 97.260 73 2 0 22 94 211874723 211874651 2.480000e-24 124.0
12 TraesCS7B01G145900 chr7D 85.321 109 15 1 6124 6231 349252243 349252135 1.930000e-20 111.0
13 TraesCS7B01G145900 chr7D 86.598 97 13 0 6120 6216 116853401 116853305 2.490000e-19 108.0
14 TraesCS7B01G145900 chr7A 97.617 1888 35 7 2172 4053 223679194 223677311 0.000000e+00 3229.0
15 TraesCS7B01G145900 chr7A 96.938 1731 29 5 4095 5818 223677038 223675325 0.000000e+00 2881.0
16 TraesCS7B01G145900 chr7A 96.734 1041 24 5 657 1695 223680826 223679794 0.000000e+00 1725.0
17 TraesCS7B01G145900 chr7A 98.125 480 9 0 1694 2173 223679711 223679232 0.000000e+00 837.0
18 TraesCS7B01G145900 chr7A 94.749 419 20 2 6124 6542 223674902 223674486 0.000000e+00 651.0
19 TraesCS7B01G145900 chr7A 96.085 281 11 0 41 321 223681245 223680965 5.980000e-125 459.0
20 TraesCS7B01G145900 chr7A 97.761 134 2 1 484 616 223680959 223680826 5.100000e-56 230.0
21 TraesCS7B01G145900 chr7A 85.577 104 15 0 6124 6227 372913065 372912962 6.940000e-20 110.0
22 TraesCS7B01G145900 chr7A 85.577 104 15 0 6124 6227 372943202 372943099 6.940000e-20 110.0
23 TraesCS7B01G145900 chr7A 100.000 44 0 0 4051 4094 223677188 223677145 1.510000e-11 82.4
24 TraesCS7B01G145900 chr5B 96.450 338 11 1 3652 3989 528265605 528265269 2.060000e-154 556.0
25 TraesCS7B01G145900 chr5B 97.191 178 5 0 3816 3993 548726918 548727095 1.070000e-77 302.0
26 TraesCS7B01G145900 chr3A 90.411 292 26 2 6251 6542 440490189 440489900 3.700000e-102 383.0
27 TraesCS7B01G145900 chr3A 86.014 286 33 7 6254 6537 628435397 628435677 3.830000e-77 300.0
28 TraesCS7B01G145900 chr4A 88.350 309 28 3 6230 6538 282103895 282104195 1.340000e-96 364.0
29 TraesCS7B01G145900 chr4A 81.905 315 46 10 6230 6542 550542481 550542786 8.420000e-64 255.0
30 TraesCS7B01G145900 chr1A 92.342 222 7 9 3802 4018 50339307 50339523 2.290000e-79 307.0
31 TraesCS7B01G145900 chr4B 95.676 185 7 1 3803 3986 78609330 78609146 4.960000e-76 296.0
32 TraesCS7B01G145900 chr4B 80.255 314 50 10 6231 6541 69294441 69294137 6.600000e-55 226.0
33 TraesCS7B01G145900 chr4B 100.000 28 0 0 2 29 74862371 74862344 1.200000e-02 52.8
34 TraesCS7B01G145900 chr1B 95.652 184 6 2 3815 3998 115751704 115751523 1.780000e-75 294.0
35 TraesCS7B01G145900 chr2D 83.013 312 39 9 6230 6535 98765148 98764845 3.010000e-68 270.0
36 TraesCS7B01G145900 chr6D 89.524 105 11 0 6123 6227 26447150 26447046 4.120000e-27 134.0
37 TraesCS7B01G145900 chr2A 87.500 104 13 0 6124 6227 85430838 85430735 3.200000e-23 121.0
38 TraesCS7B01G145900 chr5A 86.667 105 12 2 6124 6227 207517051 207517154 1.490000e-21 115.0
39 TraesCS7B01G145900 chr2B 100.000 28 0 0 1 28 73957694 73957721 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G145900 chr7B 189712343 189718884 6541 False 5892.000000 11189 100.000000 1 6542 2 chr7B.!!$F3 6541
1 TraesCS7B01G145900 chr7D 211867818 211874723 6905 True 1541.285714 6650 97.019857 22 6542 7 chr7D.!!$R3 6520
2 TraesCS7B01G145900 chr7A 223674486 223681245 6759 True 1261.800000 3229 97.251125 41 6542 8 chr7A.!!$R3 6501


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 343 0.935898 TCGTAGTCTCTCGATTCGCC 59.064 55.000 0.0 0.0 0.00 5.54 F
1730 1888 0.665835 TCATTTCCACCGTGTTGTGC 59.334 50.000 0.0 0.0 34.85 4.57 F
2764 2961 3.877508 GGACCACAACTATGAGCAATACC 59.122 47.826 0.0 0.0 0.00 2.73 F
3153 3351 1.214175 TGCCTCAAGAGAAAACCACCA 59.786 47.619 0.0 0.0 0.00 4.17 F
3973 4173 0.817229 GGAGCTTCTATGCACTGGGC 60.817 60.000 0.0 0.0 45.13 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2172 6.034256 GCACGTCAACAAGAATTACTACGTAT 59.966 38.462 0.0 0.0 40.01 3.06 R
3153 3351 1.896465 CTTCTCCTCGGTCTGTTCCTT 59.104 52.381 0.0 0.0 0.00 3.36 R
3849 4049 2.037772 CAGGACCTCTTAGCACAAGTGT 59.962 50.000 0.0 0.0 0.00 3.55 R
4299 4735 6.098838 ACACATGCTCTATTCCAGATGTTAGA 59.901 38.462 0.0 0.0 31.13 2.10 R
5654 6094 0.941542 TGGCTAGTGACAACAAACGC 59.058 50.000 0.0 0.0 0.00 4.84 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.946308 GCTCGTTAATTAGTTGCTCCC 57.054 47.619 0.00 0.00 0.00 4.30
84 85 4.802051 GGCCCAGATGAGCGCCAA 62.802 66.667 2.29 0.00 41.25 4.52
128 196 0.983378 AGAGGTTTCCATCCCCGGAG 60.983 60.000 0.73 0.00 36.12 4.63
275 343 0.935898 TCGTAGTCTCTCGATTCGCC 59.064 55.000 0.00 0.00 0.00 5.54
313 381 1.318576 CGGTGAAAAGTTTGCCCTCT 58.681 50.000 0.00 0.00 0.00 3.69
634 703 6.761312 TGGAATGATGCAATTCTTTGACTTT 58.239 32.000 10.23 0.00 36.87 2.66
635 704 7.218614 TGGAATGATGCAATTCTTTGACTTTT 58.781 30.769 10.23 0.00 36.87 2.27
636 705 7.716123 TGGAATGATGCAATTCTTTGACTTTTT 59.284 29.630 10.23 0.00 36.87 1.94
746 815 3.441500 GGAGGTTTTCCAGATTGAGGT 57.558 47.619 0.00 0.00 46.01 3.85
769 838 7.039993 AGGTTGGTTGAAATGATAAACTGGTAC 60.040 37.037 0.00 0.00 0.00 3.34
771 840 9.005777 GTTGGTTGAAATGATAAACTGGTACTA 57.994 33.333 0.00 0.00 0.00 1.82
870 939 4.640771 TGTTTCCTTATGTTCTGCTCCT 57.359 40.909 0.00 0.00 0.00 3.69
871 940 4.985538 TGTTTCCTTATGTTCTGCTCCTT 58.014 39.130 0.00 0.00 0.00 3.36
910 979 3.094572 AGCAGGACTTTTTGATGGATGG 58.905 45.455 0.00 0.00 0.00 3.51
911 980 3.091545 GCAGGACTTTTTGATGGATGGA 58.908 45.455 0.00 0.00 0.00 3.41
1262 1334 5.123186 TCGCCAAGTGGTTCAAGTTATATTG 59.877 40.000 0.00 0.00 37.57 1.90
1267 1339 7.362834 CCAAGTGGTTCAAGTTATATTGCATCA 60.363 37.037 0.00 0.00 0.00 3.07
1370 1442 2.103263 CCACCTATCTAACTGGCCTGTC 59.897 54.545 16.45 0.00 0.00 3.51
1676 1750 8.674263 ATCTTTATTTCCAGATTGCAGAGTAG 57.326 34.615 0.00 0.00 0.00 2.57
1721 1879 4.918588 TCTTAACCCTTCTCATTTCCACC 58.081 43.478 0.00 0.00 0.00 4.61
1730 1888 0.665835 TCATTTCCACCGTGTTGTGC 59.334 50.000 0.00 0.00 34.85 4.57
2013 2171 7.657336 TGAAAAGTGACTGGAATGGTAAATTC 58.343 34.615 0.00 0.00 0.00 2.17
2014 2172 7.286546 TGAAAAGTGACTGGAATGGTAAATTCA 59.713 33.333 0.00 0.00 0.00 2.57
2302 2499 6.074648 ACAAACTGTGGGATCCATCTTTAAA 58.925 36.000 15.23 0.00 35.28 1.52
2677 2874 7.453838 CACTAGTTTGGCTCGTAGTTTTTATC 58.546 38.462 0.00 0.00 0.00 1.75
2764 2961 3.877508 GGACCACAACTATGAGCAATACC 59.122 47.826 0.00 0.00 0.00 2.73
3014 3212 6.333416 TCAACATATTGACTCTTCCGAAGAG 58.667 40.000 29.09 29.09 45.81 2.85
3114 3312 7.764443 GTGAAACCATAGAGAATGTAACAGCTA 59.236 37.037 0.00 0.00 33.34 3.32
3117 3315 5.363868 ACCATAGAGAATGTAACAGCTAGCA 59.636 40.000 18.83 0.00 33.34 3.49
3118 3316 5.694006 CCATAGAGAATGTAACAGCTAGCAC 59.306 44.000 18.83 6.74 33.34 4.40
3119 3317 4.808414 AGAGAATGTAACAGCTAGCACA 57.192 40.909 18.83 12.81 0.00 4.57
3153 3351 1.214175 TGCCTCAAGAGAAAACCACCA 59.786 47.619 0.00 0.00 0.00 4.17
3244 3442 2.165030 GCCTTCTGCAAGCATTACACAT 59.835 45.455 0.00 0.00 40.77 3.21
3296 3494 6.327887 TGCCAGGAAGTATATTGTGGTATGTA 59.672 38.462 0.00 0.00 0.00 2.29
3297 3495 7.017155 TGCCAGGAAGTATATTGTGGTATGTAT 59.983 37.037 0.00 0.00 0.00 2.29
3298 3496 8.537016 GCCAGGAAGTATATTGTGGTATGTATA 58.463 37.037 0.00 0.00 0.00 1.47
3342 3540 8.408043 TGATGAACAATTTGTTATTCTGTCCT 57.592 30.769 14.49 0.00 41.28 3.85
3408 3608 8.867935 GGTCATATGATTGAGATGAGTTATTCG 58.132 37.037 9.02 0.00 32.86 3.34
3422 3622 6.338146 TGAGTTATTCGCACAGCTTTATACT 58.662 36.000 0.00 0.00 0.00 2.12
3520 3720 7.972277 GCATTGCTTTGAGAAAATAGATCTTGA 59.028 33.333 0.00 0.00 0.00 3.02
3849 4049 1.754745 GCAGTGGTGAAGTCCTCCA 59.245 57.895 0.00 0.00 36.17 3.86
3899 4099 1.378250 AGCCTCTCTGCATTGCACC 60.378 57.895 7.38 0.00 33.79 5.01
3973 4173 0.817229 GGAGCTTCTATGCACTGGGC 60.817 60.000 0.00 0.00 45.13 5.36
4100 4536 5.358160 GCCCTTTAAGTAAGCAGAACATGAT 59.642 40.000 0.00 0.00 32.19 2.45
4137 4573 9.420551 AGGATTTCTAAGAAGTTAACTTACACG 57.579 33.333 20.58 10.12 36.11 4.49
4299 4735 5.373222 TGGTACAAAAGTGCTACACTCATT 58.627 37.500 0.00 0.00 38.82 2.57
4339 4775 1.225855 TGTGTGATTGAAGGTCGTGC 58.774 50.000 0.00 0.00 0.00 5.34
5469 5908 1.886542 GGCGGAGTCATTGAAAACCTT 59.113 47.619 0.00 0.00 0.00 3.50
5606 6046 1.064758 TCTGGTTCAGGCTTGTTGTGT 60.065 47.619 0.00 0.00 31.51 3.72
5612 6052 2.997980 TCAGGCTTGTTGTGTTTCAGA 58.002 42.857 0.00 0.00 0.00 3.27
5654 6094 1.849219 GTTCTCTCAATGCGCTACTCG 59.151 52.381 9.73 0.00 42.12 4.18
5670 6110 2.124903 ACTCGCGTTTGTTGTCACTAG 58.875 47.619 5.77 0.00 0.00 2.57
5719 6159 1.832167 GTGAGGCTTTTGGTGGGCA 60.832 57.895 0.00 0.00 0.00 5.36
5736 6176 2.186076 GGCACTTGAGTCTCGTATTCG 58.814 52.381 0.00 0.00 38.55 3.34
5801 6241 7.520798 ACAGATGGTTGATAATGATATGGTGT 58.479 34.615 0.00 0.00 0.00 4.16
5802 6242 8.000709 ACAGATGGTTGATAATGATATGGTGTT 58.999 33.333 0.00 0.00 0.00 3.32
5866 6306 4.699522 GAAACTGCCTCGCCCGGT 62.700 66.667 0.00 0.00 0.00 5.28
5907 6347 3.745797 GCACCTCCTAGGAATCATCAACC 60.746 52.174 13.77 0.00 37.67 3.77
5910 6350 3.048600 CTCCTAGGAATCATCAACCCCA 58.951 50.000 13.77 0.00 0.00 4.96
6012 6457 0.984230 GGAGGGAGGTTGACATCACA 59.016 55.000 0.63 0.00 31.50 3.58
6087 6532 1.681793 AGCTTTCTCCGCGCTATTCTA 59.318 47.619 5.56 0.00 31.12 2.10
6121 6602 6.368791 TCAAGTACACACTATGTTTGCTCATC 59.631 38.462 0.00 0.00 43.19 2.92
6234 7184 9.588096 TTAGAGATACCTATTCTGCTATCACAA 57.412 33.333 0.00 0.00 0.00 3.33
6263 7213 6.980593 AGATTGTTGCTTGTAAATAGTTGCA 58.019 32.000 0.00 0.00 0.00 4.08
6265 7215 8.090214 AGATTGTTGCTTGTAAATAGTTGCATT 58.910 29.630 0.00 0.00 0.00 3.56
6436 7386 2.162608 GGTTTTGTGCCCAACCAAAAAC 59.837 45.455 0.00 0.00 41.97 2.43
6444 7394 2.223947 GCCCAACCAAAAACGATGAACT 60.224 45.455 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.532542 AGGGAGCAACTAATTAACGAGC 58.467 45.455 0.00 0.00 0.00 5.03
2 3 4.901868 ACAAGGGAGCAACTAATTAACGA 58.098 39.130 0.00 0.00 0.00 3.85
106 174 0.179000 CGGGGATGGAAACCTCTCAG 59.821 60.000 0.00 0.00 0.00 3.35
128 196 3.447025 CTGGACGGATCGGGAAGCC 62.447 68.421 5.18 1.76 0.00 4.35
637 706 7.903995 AGTCAAAGAATTGCAACTTCAAAAA 57.096 28.000 17.89 4.66 36.45 1.94
638 707 7.818930 AGAAGTCAAAGAATTGCAACTTCAAAA 59.181 29.630 20.11 5.00 44.68 2.44
639 708 7.322664 AGAAGTCAAAGAATTGCAACTTCAAA 58.677 30.769 20.11 2.15 44.68 2.69
640 709 6.866480 AGAAGTCAAAGAATTGCAACTTCAA 58.134 32.000 20.11 4.09 44.68 2.69
641 710 6.319658 AGAGAAGTCAAAGAATTGCAACTTCA 59.680 34.615 20.11 3.04 44.68 3.02
642 711 6.733145 AGAGAAGTCAAAGAATTGCAACTTC 58.267 36.000 13.33 13.33 43.69 3.01
643 712 6.705863 AGAGAAGTCAAAGAATTGCAACTT 57.294 33.333 0.00 0.00 36.71 2.66
644 713 6.705863 AAGAGAAGTCAAAGAATTGCAACT 57.294 33.333 0.00 0.00 36.45 3.16
645 714 9.122613 GAATAAGAGAAGTCAAAGAATTGCAAC 57.877 33.333 0.00 0.00 36.45 4.17
646 715 9.071276 AGAATAAGAGAAGTCAAAGAATTGCAA 57.929 29.630 0.00 0.00 36.45 4.08
647 716 8.627208 AGAATAAGAGAAGTCAAAGAATTGCA 57.373 30.769 0.00 0.00 36.45 4.08
652 721 9.088512 GCGAATAGAATAAGAGAAGTCAAAGAA 57.911 33.333 0.00 0.00 0.00 2.52
653 722 7.432545 CGCGAATAGAATAAGAGAAGTCAAAGA 59.567 37.037 0.00 0.00 0.00 2.52
654 723 7.221067 ACGCGAATAGAATAAGAGAAGTCAAAG 59.779 37.037 15.93 0.00 0.00 2.77
655 724 7.009265 CACGCGAATAGAATAAGAGAAGTCAAA 59.991 37.037 15.93 0.00 0.00 2.69
656 725 6.472486 CACGCGAATAGAATAAGAGAAGTCAA 59.528 38.462 15.93 0.00 0.00 3.18
743 812 5.838521 ACCAGTTTATCATTTCAACCAACCT 59.161 36.000 0.00 0.00 0.00 3.50
746 815 9.747898 ATAGTACCAGTTTATCATTTCAACCAA 57.252 29.630 0.00 0.00 0.00 3.67
769 838 8.432805 ACACAAATCATAACCCTCTTAGGATAG 58.567 37.037 0.00 0.00 37.67 2.08
771 840 7.213178 ACACAAATCATAACCCTCTTAGGAT 57.787 36.000 0.00 0.00 37.67 3.24
870 939 2.297033 GCTGCATTCAAACTTCTGGGAA 59.703 45.455 0.00 0.00 0.00 3.97
871 940 1.888512 GCTGCATTCAAACTTCTGGGA 59.111 47.619 0.00 0.00 0.00 4.37
910 979 5.646577 ATAGACCGGTAGAGCAATACATC 57.353 43.478 7.34 0.00 0.00 3.06
911 980 7.147880 GGAATATAGACCGGTAGAGCAATACAT 60.148 40.741 7.34 0.00 0.00 2.29
1169 1241 6.371825 GGAAGCATGTTATAGGGTTATACTGC 59.628 42.308 0.00 0.00 29.98 4.40
1653 1727 7.856145 ACTACTCTGCAATCTGGAAATAAAG 57.144 36.000 0.00 0.00 0.00 1.85
1792 1950 8.557864 CATTAGCATGTTTAGATTCTCTTCCTG 58.442 37.037 0.00 0.00 0.00 3.86
2013 2171 7.381079 CACGTCAACAAGAATTACTACGTATG 58.619 38.462 0.00 0.00 40.01 2.39
2014 2172 6.034256 GCACGTCAACAAGAATTACTACGTAT 59.966 38.462 0.00 0.00 40.01 3.06
2315 2512 7.716799 AGGCCAACTCATAAATTTATCAACA 57.283 32.000 5.01 0.00 0.00 3.33
2677 2874 7.144722 TGTACATCTTTGGCAAGATTACTTG 57.855 36.000 0.00 0.00 46.07 3.16
2764 2961 2.029838 ATCCTGCCTTTAGTGCTTCG 57.970 50.000 0.00 0.00 0.00 3.79
2945 3143 8.944029 GGATCTTCAATAACCATGTCATCATAG 58.056 37.037 0.00 0.00 32.47 2.23
3114 3312 2.669391 GCAAATTTAGCTCGCTTGTGCT 60.669 45.455 0.00 0.00 44.17 4.40
3117 3315 2.162408 GAGGCAAATTTAGCTCGCTTGT 59.838 45.455 0.00 0.00 0.00 3.16
3118 3316 2.162208 TGAGGCAAATTTAGCTCGCTTG 59.838 45.455 0.00 0.00 0.00 4.01
3119 3317 2.436417 TGAGGCAAATTTAGCTCGCTT 58.564 42.857 0.00 0.00 0.00 4.68
3153 3351 1.896465 CTTCTCCTCGGTCTGTTCCTT 59.104 52.381 0.00 0.00 0.00 3.36
3244 3442 6.168389 GGGAGGTCTTTATCTTTTACGTTCA 58.832 40.000 0.00 0.00 0.00 3.18
3342 3540 5.070446 AGTGTCACATGAACCTACTCAGAAA 59.930 40.000 5.62 0.00 0.00 2.52
3408 3608 4.748892 TGAGACTCAGTATAAAGCTGTGC 58.251 43.478 0.00 0.00 35.60 4.57
3422 3622 6.826668 TCAAAAGACTTGGTAATGAGACTCA 58.173 36.000 7.80 7.80 0.00 3.41
3849 4049 2.037772 CAGGACCTCTTAGCACAAGTGT 59.962 50.000 0.00 0.00 0.00 3.55
3899 4099 2.188817 ACCTAGTCTTACCCCTGCAAG 58.811 52.381 0.00 0.00 0.00 4.01
4100 4536 7.905106 ACTTCTTAGAAATCCTTAGGAACCCTA 59.095 37.037 4.56 4.08 34.34 3.53
4137 4573 7.285401 TGGAAGATGAATAAATCAAACCCTAGC 59.715 37.037 0.00 0.00 42.54 3.42
4299 4735 6.098838 ACACATGCTCTATTCCAGATGTTAGA 59.901 38.462 0.00 0.00 31.13 2.10
4375 4814 9.194271 GACTCTTTCTAAATCTTACAAGTTCGT 57.806 33.333 0.00 0.00 0.00 3.85
5469 5908 1.444119 GGTCAACGAGGTGCTTTGCA 61.444 55.000 0.00 0.00 35.60 4.08
5606 6046 6.918626 TCACATTTTCACAACAAGTCTGAAA 58.081 32.000 3.26 3.26 33.17 2.69
5612 6052 7.818930 AGAACATTTCACATTTTCACAACAAGT 59.181 29.630 0.00 0.00 0.00 3.16
5654 6094 0.941542 TGGCTAGTGACAACAAACGC 59.058 50.000 0.00 0.00 0.00 4.84
5670 6110 4.183101 CAAACACCATATTGTCCAATGGC 58.817 43.478 0.00 0.00 45.53 4.40
5719 6159 4.215827 AGTTCACGAATACGAGACTCAAGT 59.784 41.667 2.82 0.00 42.66 3.16
5736 6176 6.252281 TGTTTTGACGTCACAATTAGTTCAC 58.748 36.000 19.90 4.87 0.00 3.18
5802 6242 8.992073 CGAGATCATTTTGTCACCATATCATTA 58.008 33.333 0.00 0.00 0.00 1.90
5910 6350 2.091283 AAACCCTGTCCAGCCCCTT 61.091 57.895 0.00 0.00 0.00 3.95
5948 6393 3.244284 TGGTCGGACCCCATTTATTATCG 60.244 47.826 23.81 0.00 37.50 2.92
5990 6435 0.833949 GATGTCAACCTCCCTCCCTC 59.166 60.000 0.00 0.00 0.00 4.30
5991 6436 0.119155 TGATGTCAACCTCCCTCCCT 59.881 55.000 0.00 0.00 0.00 4.20
5992 6437 0.253327 GTGATGTCAACCTCCCTCCC 59.747 60.000 0.00 0.00 0.00 4.30
5993 6438 0.984230 TGTGATGTCAACCTCCCTCC 59.016 55.000 0.00 0.00 0.00 4.30
6012 6457 1.635663 CGGCGAAAATCAAGGCGTCT 61.636 55.000 0.00 0.00 46.52 4.18
6087 6532 6.936900 ACATAGTGTGTACTTGAAAATGCTCT 59.063 34.615 0.00 0.00 39.91 4.09
6159 6762 1.486726 CTGCCGGTAATCTCCCTCTTT 59.513 52.381 1.90 0.00 0.00 2.52
6228 7178 4.307032 AGCAACAATCTAGGGTTGTGAT 57.693 40.909 17.87 9.01 44.70 3.06
6234 7184 7.402862 ACTATTTACAAGCAACAATCTAGGGT 58.597 34.615 0.00 0.00 0.00 4.34
6263 7213 8.809468 AAATATGATGCATGATGCTCTCTAAT 57.191 30.769 19.19 1.93 45.31 1.73
6265 7215 9.901172 ATTAAATATGATGCATGATGCTCTCTA 57.099 29.630 19.19 5.97 45.31 2.43
6320 7270 7.393234 GCCCTTTATTTAAAATTTGGAGGCTTT 59.607 33.333 0.00 0.00 0.00 3.51



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.