Multiple sequence alignment - TraesCS7B01G145700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G145700 chr7B 100.000 3086 0 0 1 3086 189496856 189493771 0.000000e+00 5699
1 TraesCS7B01G145700 chr7D 88.742 906 28 31 1 869 212207164 212208032 0.000000e+00 1040
2 TraesCS7B01G145700 chr7D 83.414 1037 62 49 2120 3086 212208208 212209204 0.000000e+00 861
3 TraesCS7B01G145700 chr7D 91.837 196 9 2 918 1106 212208030 212208225 1.820000e-67 267
4 TraesCS7B01G145700 chr1B 96.091 614 24 0 1192 1805 26983626 26983013 0.000000e+00 1002
5 TraesCS7B01G145700 chr1B 94.198 293 16 1 1832 2123 26983018 26982726 2.180000e-121 446
6 TraesCS7B01G145700 chr2D 97.715 569 13 0 1104 1672 57155376 57154808 0.000000e+00 979
7 TraesCS7B01G145700 chr2D 98.317 416 7 0 1670 2085 57151305 57150890 0.000000e+00 730
8 TraesCS7B01G145700 chr7A 86.006 929 51 35 3 869 224037669 224038580 0.000000e+00 922
9 TraesCS7B01G145700 chr7A 81.586 353 35 12 2751 3086 224039342 224039681 6.560000e-67 265
10 TraesCS7B01G145700 chr7A 91.379 174 5 5 2112 2275 224038729 224038902 2.390000e-56 230
11 TraesCS7B01G145700 chr2A 97.292 517 14 0 1195 1711 52218150 52217634 0.000000e+00 878
12 TraesCS7B01G145700 chr2A 96.518 517 18 0 1195 1711 52191707 52191191 0.000000e+00 856
13 TraesCS7B01G145700 chr2A 97.030 404 12 0 1710 2113 52186017 52185614 0.000000e+00 680
14 TraesCS7B01G145700 chr2A 94.595 74 3 1 1104 1176 52218339 52218266 2.520000e-21 113
15 TraesCS7B01G145700 chr2A 93.151 73 3 2 1105 1176 52191894 52191823 4.210000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G145700 chr7B 189493771 189496856 3085 True 5699.000000 5699 100.000000 1 3086 1 chr7B.!!$R1 3085
1 TraesCS7B01G145700 chr7D 212207164 212209204 2040 False 722.666667 1040 87.997667 1 3086 3 chr7D.!!$F1 3085
2 TraesCS7B01G145700 chr1B 26982726 26983626 900 True 724.000000 1002 95.144500 1192 2123 2 chr1B.!!$R1 931
3 TraesCS7B01G145700 chr2D 57150890 57155376 4486 True 854.500000 979 98.016000 1104 2085 2 chr2D.!!$R1 981
4 TraesCS7B01G145700 chr7A 224037669 224039681 2012 False 472.333333 922 86.323667 3 3086 3 chr7A.!!$F1 3083
5 TraesCS7B01G145700 chr2A 52217634 52218339 705 True 495.500000 878 95.943500 1104 1711 2 chr2A.!!$R3 607
6 TraesCS7B01G145700 chr2A 52191191 52191894 703 True 481.000000 856 94.834500 1105 1711 2 chr2A.!!$R2 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 971 0.257328 TGGGTTGACAGTGAAAGGCA 59.743 50.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2171 5997 0.031616 AAGGGGCAGAAAACCAACCA 60.032 50.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 112 2.642311 TGGCCAGTGAGGTCTAAATCAA 59.358 45.455 0.00 0.00 44.59 2.57
322 342 2.380249 TGGTTGAGAGAAGAGAGAGGGA 59.620 50.000 0.00 0.00 0.00 4.20
323 343 3.023832 GGTTGAGAGAAGAGAGAGGGAG 58.976 54.545 0.00 0.00 0.00 4.30
324 344 3.308832 GGTTGAGAGAAGAGAGAGGGAGA 60.309 52.174 0.00 0.00 0.00 3.71
325 345 4.536765 GTTGAGAGAAGAGAGAGGGAGAT 58.463 47.826 0.00 0.00 0.00 2.75
326 346 4.437682 TGAGAGAAGAGAGAGGGAGATC 57.562 50.000 0.00 0.00 0.00 2.75
327 347 3.181455 TGAGAGAAGAGAGAGGGAGATCG 60.181 52.174 0.00 0.00 0.00 3.69
329 349 1.850345 AGAAGAGAGAGGGAGATCGGT 59.150 52.381 0.00 0.00 0.00 4.69
330 350 1.953686 GAAGAGAGAGGGAGATCGGTG 59.046 57.143 0.00 0.00 0.00 4.94
471 508 3.056313 GAGGAAGGGTGCGCAATGC 62.056 63.158 14.00 4.20 46.70 3.56
524 569 0.772124 AGGGTGGAGAAGGGAGCAAA 60.772 55.000 0.00 0.00 0.00 3.68
525 570 0.322906 GGGTGGAGAAGGGAGCAAAG 60.323 60.000 0.00 0.00 0.00 2.77
526 571 0.322906 GGTGGAGAAGGGAGCAAAGG 60.323 60.000 0.00 0.00 0.00 3.11
587 660 8.712285 AGTTTTTGCTGTAACTTCGCTATATA 57.288 30.769 0.00 0.00 30.72 0.86
588 661 9.326413 AGTTTTTGCTGTAACTTCGCTATATAT 57.674 29.630 0.00 0.00 30.72 0.86
591 664 8.752766 TTTGCTGTAACTTCGCTATATATACC 57.247 34.615 0.00 0.00 0.00 2.73
592 665 6.860080 TGCTGTAACTTCGCTATATATACCC 58.140 40.000 0.00 0.00 0.00 3.69
593 666 6.127535 TGCTGTAACTTCGCTATATATACCCC 60.128 42.308 0.00 0.00 0.00 4.95
594 667 6.682362 GCTGTAACTTCGCTATATATACCCCC 60.682 46.154 0.00 0.00 0.00 5.40
608 681 3.733972 CCCCCAACCACGCCCATA 61.734 66.667 0.00 0.00 0.00 2.74
609 682 2.600731 CCCCAACCACGCCCATAT 59.399 61.111 0.00 0.00 0.00 1.78
655 731 0.670162 GCCATTGTTGTCAGCACTGT 59.330 50.000 6.34 0.00 0.00 3.55
716 812 0.756294 ACACGGTCACACTCCATCAA 59.244 50.000 0.00 0.00 0.00 2.57
727 823 7.968405 GGTCACACTCCATCAACAATAAAATAC 59.032 37.037 0.00 0.00 0.00 1.89
733 829 4.497340 CCATCAACAATAAAATACCGCGCT 60.497 41.667 5.56 0.00 0.00 5.92
754 851 1.678101 GGCTTTGCTTCTGTGTCTTGT 59.322 47.619 0.00 0.00 0.00 3.16
792 891 1.068895 CTGGCACCAATTTTGTGCTGA 59.931 47.619 22.45 12.70 43.02 4.26
831 930 3.996363 CGATCAGGTCAGATGTGTTCAAA 59.004 43.478 0.00 0.00 0.00 2.69
834 933 3.996363 TCAGGTCAGATGTGTTCAAATCG 59.004 43.478 0.00 0.00 0.00 3.34
845 944 1.043816 TTCAAATCGGCTTGCCCAAA 58.956 45.000 6.02 0.00 0.00 3.28
847 946 1.000731 TCAAATCGGCTTGCCCAAAAG 59.999 47.619 6.02 0.00 0.00 2.27
848 947 1.047801 AAATCGGCTTGCCCAAAAGT 58.952 45.000 6.02 0.00 0.00 2.66
849 948 0.603065 AATCGGCTTGCCCAAAAGTC 59.397 50.000 6.02 0.00 0.00 3.01
869 971 0.257328 TGGGTTGACAGTGAAAGGCA 59.743 50.000 0.00 0.00 0.00 4.75
870 972 0.954452 GGGTTGACAGTGAAAGGCAG 59.046 55.000 0.00 0.00 0.00 4.85
871 973 1.680338 GGTTGACAGTGAAAGGCAGT 58.320 50.000 0.00 0.00 0.00 4.40
879 981 4.410492 CAGTGAAAGGCAGTGTGATTAC 57.590 45.455 0.00 0.00 41.95 1.89
880 982 3.067106 AGTGAAAGGCAGTGTGATTACG 58.933 45.455 0.00 0.00 0.00 3.18
881 983 3.064207 GTGAAAGGCAGTGTGATTACGA 58.936 45.455 0.00 0.00 0.00 3.43
882 984 3.684788 GTGAAAGGCAGTGTGATTACGAT 59.315 43.478 0.00 0.00 0.00 3.73
883 985 4.154195 GTGAAAGGCAGTGTGATTACGATT 59.846 41.667 0.00 0.00 0.00 3.34
884 986 5.350365 GTGAAAGGCAGTGTGATTACGATTA 59.650 40.000 0.00 0.00 0.00 1.75
885 987 5.350365 TGAAAGGCAGTGTGATTACGATTAC 59.650 40.000 0.00 0.00 0.00 1.89
886 988 3.793559 AGGCAGTGTGATTACGATTACC 58.206 45.455 0.00 0.00 0.00 2.85
887 989 2.538449 GGCAGTGTGATTACGATTACCG 59.462 50.000 0.00 0.00 45.44 4.02
888 990 3.441163 GCAGTGTGATTACGATTACCGA 58.559 45.455 0.00 0.00 41.76 4.69
889 991 4.049186 GCAGTGTGATTACGATTACCGAT 58.951 43.478 0.00 0.00 41.76 4.18
890 992 4.506654 GCAGTGTGATTACGATTACCGATT 59.493 41.667 0.00 0.00 41.76 3.34
891 993 5.006358 GCAGTGTGATTACGATTACCGATTT 59.994 40.000 0.00 0.00 41.76 2.17
892 994 6.456449 GCAGTGTGATTACGATTACCGATTTT 60.456 38.462 0.00 0.00 41.76 1.82
893 995 6.899771 CAGTGTGATTACGATTACCGATTTTG 59.100 38.462 0.00 0.00 41.76 2.44
894 996 6.592607 AGTGTGATTACGATTACCGATTTTGT 59.407 34.615 0.00 0.00 41.76 2.83
895 997 6.681178 GTGTGATTACGATTACCGATTTTGTG 59.319 38.462 0.00 0.00 41.76 3.33
896 998 5.675444 GTGATTACGATTACCGATTTTGTGC 59.325 40.000 0.00 0.00 41.76 4.57
897 999 5.351740 TGATTACGATTACCGATTTTGTGCA 59.648 36.000 0.00 0.00 41.76 4.57
898 1000 5.804692 TTACGATTACCGATTTTGTGCAT 57.195 34.783 0.00 0.00 41.76 3.96
899 1001 4.695217 ACGATTACCGATTTTGTGCATT 57.305 36.364 0.00 0.00 41.76 3.56
900 1002 4.658071 ACGATTACCGATTTTGTGCATTC 58.342 39.130 0.00 0.00 41.76 2.67
901 1003 4.035017 CGATTACCGATTTTGTGCATTCC 58.965 43.478 0.00 0.00 41.76 3.01
902 1004 4.201910 CGATTACCGATTTTGTGCATTCCT 60.202 41.667 0.00 0.00 41.76 3.36
903 1005 5.650543 GATTACCGATTTTGTGCATTCCTT 58.349 37.500 0.00 0.00 0.00 3.36
904 1006 5.461032 TTACCGATTTTGTGCATTCCTTT 57.539 34.783 0.00 0.00 0.00 3.11
905 1007 4.335400 ACCGATTTTGTGCATTCCTTTT 57.665 36.364 0.00 0.00 0.00 2.27
906 1008 4.057432 ACCGATTTTGTGCATTCCTTTTG 58.943 39.130 0.00 0.00 0.00 2.44
907 1009 3.120580 CCGATTTTGTGCATTCCTTTTGC 60.121 43.478 0.00 0.00 40.55 3.68
908 1010 3.742369 CGATTTTGTGCATTCCTTTTGCT 59.258 39.130 0.00 0.00 40.77 3.91
909 1011 4.211794 CGATTTTGTGCATTCCTTTTGCTT 59.788 37.500 0.00 0.00 40.77 3.91
910 1012 5.277442 CGATTTTGTGCATTCCTTTTGCTTT 60.277 36.000 0.00 0.00 40.77 3.51
911 1013 4.879104 TTTGTGCATTCCTTTTGCTTTG 57.121 36.364 0.00 0.00 40.77 2.77
912 1014 3.815856 TGTGCATTCCTTTTGCTTTGA 57.184 38.095 0.00 0.00 40.77 2.69
913 1015 4.339872 TGTGCATTCCTTTTGCTTTGAT 57.660 36.364 0.00 0.00 40.77 2.57
914 1016 4.059511 TGTGCATTCCTTTTGCTTTGATG 58.940 39.130 0.00 0.00 40.77 3.07
915 1017 4.202233 TGTGCATTCCTTTTGCTTTGATGA 60.202 37.500 0.00 0.00 40.77 2.92
916 1018 4.933400 GTGCATTCCTTTTGCTTTGATGAT 59.067 37.500 0.00 0.00 40.77 2.45
917 1019 4.932799 TGCATTCCTTTTGCTTTGATGATG 59.067 37.500 0.00 0.00 40.77 3.07
918 1020 4.331717 GCATTCCTTTTGCTTTGATGATGG 59.668 41.667 0.00 0.00 37.14 3.51
919 1021 4.540359 TTCCTTTTGCTTTGATGATGGG 57.460 40.909 0.00 0.00 0.00 4.00
1000 1103 1.469703 CAATGAACGGCTGAGAATGCA 59.530 47.619 0.00 0.00 0.00 3.96
1004 1107 0.322816 AACGGCTGAGAATGCATGGT 60.323 50.000 0.00 0.00 0.00 3.55
1024 1127 1.868713 TACTTTATCGCCAGGGGTCA 58.131 50.000 2.89 0.00 0.00 4.02
1175 1398 3.362706 TCCACTTCTTATGGCGTCTAGT 58.637 45.455 0.00 0.00 37.13 2.57
1255 1576 3.933332 ACGATGCCTAGTTTGCTTTAGAC 59.067 43.478 0.00 0.00 0.00 2.59
1344 1665 3.853355 ATGGAACCTATCAGGCTGAAG 57.147 47.619 22.84 18.25 39.63 3.02
1648 1969 3.254411 TGCATTTCACAAAGGAACGCATA 59.746 39.130 0.00 0.00 33.13 3.14
1735 5561 1.215647 GAACACGTCTCGGATGCCT 59.784 57.895 0.00 0.00 0.00 4.75
1909 5735 8.163408 TCCAAGAGATAAAATTTCAACTGAGGA 58.837 33.333 0.00 0.00 0.00 3.71
1965 5791 4.395854 CCTATGTCTTGTAACAATGCAGCA 59.604 41.667 0.00 0.00 31.81 4.41
2097 5923 4.404073 AGGTCTCTGTAGTGGAATAGCAAG 59.596 45.833 0.00 0.00 0.00 4.01
2136 5962 4.329462 AAAAAGAAAACTATGGGCGCAA 57.671 36.364 10.83 0.00 0.00 4.85
2137 5963 4.535526 AAAAGAAAACTATGGGCGCAAT 57.464 36.364 10.83 4.67 0.00 3.56
2138 5964 3.508744 AAGAAAACTATGGGCGCAATG 57.491 42.857 10.83 6.18 0.00 2.82
2139 5965 1.750778 AGAAAACTATGGGCGCAATGG 59.249 47.619 10.83 6.95 0.00 3.16
2140 5966 0.823460 AAAACTATGGGCGCAATGGG 59.177 50.000 10.83 0.90 0.00 4.00
2141 5967 0.033601 AAACTATGGGCGCAATGGGA 60.034 50.000 10.83 0.00 0.00 4.37
2142 5968 0.466189 AACTATGGGCGCAATGGGAG 60.466 55.000 10.83 3.19 0.00 4.30
2143 5969 2.203337 TATGGGCGCAATGGGAGC 60.203 61.111 10.83 0.00 42.17 4.70
2151 5977 3.746889 CAATGGGAGCCGCGCAAA 61.747 61.111 8.75 0.00 43.16 3.68
2152 5978 3.747976 AATGGGAGCCGCGCAAAC 61.748 61.111 8.75 0.00 43.16 2.93
2153 5979 4.722700 ATGGGAGCCGCGCAAACT 62.723 61.111 8.75 0.00 43.16 2.66
2161 5987 3.490759 CGCGCAAACTCCGAGCAT 61.491 61.111 8.75 0.00 0.00 3.79
2162 5988 2.870372 GCGCAAACTCCGAGCATT 59.130 55.556 0.30 0.00 0.00 3.56
2163 5989 1.210155 GCGCAAACTCCGAGCATTT 59.790 52.632 0.30 0.00 0.00 2.32
2164 5990 1.067199 GCGCAAACTCCGAGCATTTG 61.067 55.000 0.30 6.99 36.58 2.32
2165 5991 0.454957 CGCAAACTCCGAGCATTTGG 60.455 55.000 11.46 1.87 34.55 3.28
2166 5992 0.109132 GCAAACTCCGAGCATTTGGG 60.109 55.000 11.46 0.00 34.55 4.12
2167 5993 0.527565 CAAACTCCGAGCATTTGGGG 59.472 55.000 0.00 0.00 34.07 4.96
2168 5994 1.250840 AAACTCCGAGCATTTGGGGC 61.251 55.000 0.00 0.00 30.42 5.80
2169 5995 2.142292 AACTCCGAGCATTTGGGGCT 62.142 55.000 0.00 0.00 46.07 5.19
2170 5996 2.045045 TCCGAGCATTTGGGGCTG 60.045 61.111 0.00 0.00 42.78 4.85
2171 5997 2.361610 CCGAGCATTTGGGGCTGT 60.362 61.111 0.00 0.00 42.78 4.40
2172 5998 2.703798 CCGAGCATTTGGGGCTGTG 61.704 63.158 0.00 0.00 42.78 3.66
2173 5999 2.703798 CGAGCATTTGGGGCTGTGG 61.704 63.158 0.00 0.00 42.78 4.17
2174 6000 1.607467 GAGCATTTGGGGCTGTGGT 60.607 57.895 0.00 0.00 42.78 4.16
2175 6001 1.152269 AGCATTTGGGGCTGTGGTT 60.152 52.632 0.00 0.00 40.80 3.67
2176 6002 1.004679 GCATTTGGGGCTGTGGTTG 60.005 57.895 0.00 0.00 0.00 3.77
2177 6003 1.672898 CATTTGGGGCTGTGGTTGG 59.327 57.895 0.00 0.00 0.00 3.77
2178 6004 1.120795 CATTTGGGGCTGTGGTTGGT 61.121 55.000 0.00 0.00 0.00 3.67
2179 6005 0.399806 ATTTGGGGCTGTGGTTGGTT 60.400 50.000 0.00 0.00 0.00 3.67
2180 6006 0.618968 TTTGGGGCTGTGGTTGGTTT 60.619 50.000 0.00 0.00 0.00 3.27
2181 6007 0.618968 TTGGGGCTGTGGTTGGTTTT 60.619 50.000 0.00 0.00 0.00 2.43
2182 6008 1.045911 TGGGGCTGTGGTTGGTTTTC 61.046 55.000 0.00 0.00 0.00 2.29
2183 6009 0.759060 GGGGCTGTGGTTGGTTTTCT 60.759 55.000 0.00 0.00 0.00 2.52
2184 6010 0.389025 GGGCTGTGGTTGGTTTTCTG 59.611 55.000 0.00 0.00 0.00 3.02
2185 6011 0.249447 GGCTGTGGTTGGTTTTCTGC 60.249 55.000 0.00 0.00 0.00 4.26
2186 6012 0.249447 GCTGTGGTTGGTTTTCTGCC 60.249 55.000 0.00 0.00 0.00 4.85
2187 6013 0.389025 CTGTGGTTGGTTTTCTGCCC 59.611 55.000 0.00 0.00 0.00 5.36
2188 6014 1.045911 TGTGGTTGGTTTTCTGCCCC 61.046 55.000 0.00 0.00 0.00 5.80
2189 6015 0.759060 GTGGTTGGTTTTCTGCCCCT 60.759 55.000 0.00 0.00 0.00 4.79
2190 6016 0.031616 TGGTTGGTTTTCTGCCCCTT 60.032 50.000 0.00 0.00 0.00 3.95
2191 6017 1.128200 GGTTGGTTTTCTGCCCCTTT 58.872 50.000 0.00 0.00 0.00 3.11
2192 6018 1.488812 GGTTGGTTTTCTGCCCCTTTT 59.511 47.619 0.00 0.00 0.00 2.27
2193 6019 2.560504 GTTGGTTTTCTGCCCCTTTTG 58.439 47.619 0.00 0.00 0.00 2.44
2194 6020 1.127343 TGGTTTTCTGCCCCTTTTGG 58.873 50.000 0.00 0.00 39.97 3.28
2201 6027 4.100084 GCCCCTTTTGGCCCATGC 62.100 66.667 0.00 0.00 46.11 4.06
2202 6028 2.284847 CCCCTTTTGGCCCATGCT 60.285 61.111 0.00 0.00 38.58 3.79
2203 6029 1.919816 CCCCTTTTGGCCCATGCTT 60.920 57.895 0.00 0.00 38.58 3.91
2204 6030 1.598517 CCCTTTTGGCCCATGCTTC 59.401 57.895 0.00 0.00 38.58 3.86
2205 6031 0.906282 CCCTTTTGGCCCATGCTTCT 60.906 55.000 0.00 0.00 38.58 2.85
2206 6032 0.978907 CCTTTTGGCCCATGCTTCTT 59.021 50.000 0.00 0.00 37.74 2.52
2207 6033 1.066645 CCTTTTGGCCCATGCTTCTTC 60.067 52.381 0.00 0.00 37.74 2.87
2208 6034 0.602562 TTTTGGCCCATGCTTCTTCG 59.397 50.000 0.00 0.00 37.74 3.79
2209 6035 0.251121 TTTGGCCCATGCTTCTTCGA 60.251 50.000 0.00 0.00 37.74 3.71
2210 6036 0.034186 TTGGCCCATGCTTCTTCGAT 60.034 50.000 0.00 0.00 37.74 3.59
2211 6037 0.464373 TGGCCCATGCTTCTTCGATC 60.464 55.000 0.00 0.00 37.74 3.69
2212 6038 1.169034 GGCCCATGCTTCTTCGATCC 61.169 60.000 0.00 0.00 37.74 3.36
2213 6039 0.179034 GCCCATGCTTCTTCGATCCT 60.179 55.000 0.00 0.00 33.53 3.24
2214 6040 1.748591 GCCCATGCTTCTTCGATCCTT 60.749 52.381 0.00 0.00 33.53 3.36
2215 6041 2.216898 CCCATGCTTCTTCGATCCTTC 58.783 52.381 0.00 0.00 0.00 3.46
2216 6042 2.158842 CCCATGCTTCTTCGATCCTTCT 60.159 50.000 0.00 0.00 0.00 2.85
2217 6043 2.871022 CCATGCTTCTTCGATCCTTCTG 59.129 50.000 0.00 0.00 0.00 3.02
2218 6044 2.680312 TGCTTCTTCGATCCTTCTGG 57.320 50.000 0.00 0.00 0.00 3.86
2219 6045 1.902508 TGCTTCTTCGATCCTTCTGGT 59.097 47.619 0.00 0.00 34.23 4.00
2220 6046 3.096852 TGCTTCTTCGATCCTTCTGGTA 58.903 45.455 0.00 0.00 34.23 3.25
2221 6047 3.131223 TGCTTCTTCGATCCTTCTGGTAG 59.869 47.826 0.00 0.00 34.23 3.18
2222 6048 3.131400 GCTTCTTCGATCCTTCTGGTAGT 59.869 47.826 0.00 0.00 34.23 2.73
2223 6049 4.677584 CTTCTTCGATCCTTCTGGTAGTG 58.322 47.826 0.00 0.00 34.23 2.74
2224 6050 3.698289 TCTTCGATCCTTCTGGTAGTGT 58.302 45.455 0.00 0.00 34.23 3.55
2225 6051 4.087182 TCTTCGATCCTTCTGGTAGTGTT 58.913 43.478 0.00 0.00 34.23 3.32
2226 6052 3.868757 TCGATCCTTCTGGTAGTGTTG 57.131 47.619 0.00 0.00 34.23 3.33
2227 6053 2.496070 TCGATCCTTCTGGTAGTGTTGG 59.504 50.000 0.00 0.00 34.23 3.77
2228 6054 2.233922 CGATCCTTCTGGTAGTGTTGGT 59.766 50.000 0.00 0.00 34.23 3.67
2229 6055 3.306780 CGATCCTTCTGGTAGTGTTGGTT 60.307 47.826 0.00 0.00 34.23 3.67
2230 6056 4.081862 CGATCCTTCTGGTAGTGTTGGTTA 60.082 45.833 0.00 0.00 34.23 2.85
2231 6057 5.395324 CGATCCTTCTGGTAGTGTTGGTTAT 60.395 44.000 0.00 0.00 34.23 1.89
2232 6058 5.416271 TCCTTCTGGTAGTGTTGGTTATC 57.584 43.478 0.00 0.00 34.23 1.75
2233 6059 4.841813 TCCTTCTGGTAGTGTTGGTTATCA 59.158 41.667 0.00 0.00 34.23 2.15
2234 6060 5.046591 TCCTTCTGGTAGTGTTGGTTATCAG 60.047 44.000 0.00 0.00 34.23 2.90
2235 6061 4.819105 TCTGGTAGTGTTGGTTATCAGG 57.181 45.455 0.00 0.00 30.63 3.86
2236 6062 3.517901 TCTGGTAGTGTTGGTTATCAGGG 59.482 47.826 0.00 0.00 30.63 4.45
2237 6063 2.574369 TGGTAGTGTTGGTTATCAGGGG 59.426 50.000 0.00 0.00 0.00 4.79
2238 6064 2.640184 GTAGTGTTGGTTATCAGGGGC 58.360 52.381 0.00 0.00 0.00 5.80
2239 6065 0.035439 AGTGTTGGTTATCAGGGGCG 60.035 55.000 0.00 0.00 0.00 6.13
2240 6066 1.029947 GTGTTGGTTATCAGGGGCGG 61.030 60.000 0.00 0.00 0.00 6.13
2241 6067 1.202099 TGTTGGTTATCAGGGGCGGA 61.202 55.000 0.00 0.00 0.00 5.54
2242 6068 0.034863 GTTGGTTATCAGGGGCGGAA 60.035 55.000 0.00 0.00 0.00 4.30
2243 6069 0.699399 TTGGTTATCAGGGGCGGAAA 59.301 50.000 0.00 0.00 0.00 3.13
2244 6070 0.699399 TGGTTATCAGGGGCGGAAAA 59.301 50.000 0.00 0.00 0.00 2.29
2245 6071 1.340600 TGGTTATCAGGGGCGGAAAAG 60.341 52.381 0.00 0.00 0.00 2.27
2246 6072 1.340697 GGTTATCAGGGGCGGAAAAGT 60.341 52.381 0.00 0.00 0.00 2.66
2247 6073 2.443416 GTTATCAGGGGCGGAAAAGTT 58.557 47.619 0.00 0.00 0.00 2.66
2248 6074 2.122783 TATCAGGGGCGGAAAAGTTG 57.877 50.000 0.00 0.00 0.00 3.16
2249 6075 0.404040 ATCAGGGGCGGAAAAGTTGA 59.596 50.000 0.00 0.00 0.00 3.18
2250 6076 0.536460 TCAGGGGCGGAAAAGTTGAC 60.536 55.000 0.00 0.00 0.00 3.18
2251 6077 1.599797 AGGGGCGGAAAAGTTGACG 60.600 57.895 0.00 0.00 0.00 4.35
2256 6082 3.383026 CGGAAAAGTTGACGCATGG 57.617 52.632 0.00 0.00 0.00 3.66
2257 6083 0.109781 CGGAAAAGTTGACGCATGGG 60.110 55.000 8.44 8.44 0.00 4.00
2258 6084 0.243636 GGAAAAGTTGACGCATGGGG 59.756 55.000 14.94 0.00 0.00 4.96
2259 6085 0.958822 GAAAAGTTGACGCATGGGGT 59.041 50.000 14.94 0.00 0.00 4.95
2260 6086 0.673437 AAAAGTTGACGCATGGGGTG 59.327 50.000 14.94 0.00 0.00 4.61
2269 6095 4.462394 CATGGGGTGCCTATCGTG 57.538 61.111 0.00 0.00 0.00 4.35
2270 6096 1.829456 CATGGGGTGCCTATCGTGA 59.171 57.895 0.00 0.00 0.00 4.35
2271 6097 0.180171 CATGGGGTGCCTATCGTGAA 59.820 55.000 0.00 0.00 0.00 3.18
2272 6098 0.916086 ATGGGGTGCCTATCGTGAAA 59.084 50.000 0.00 0.00 0.00 2.69
2273 6099 0.251916 TGGGGTGCCTATCGTGAAAG 59.748 55.000 0.00 0.00 0.00 2.62
2274 6100 1.095807 GGGGTGCCTATCGTGAAAGC 61.096 60.000 0.00 0.00 0.00 3.51
2275 6101 0.392461 GGGTGCCTATCGTGAAAGCA 60.392 55.000 0.00 0.00 0.00 3.91
2276 6102 1.009829 GGTGCCTATCGTGAAAGCAG 58.990 55.000 0.00 0.00 33.37 4.24
2277 6103 0.375106 GTGCCTATCGTGAAAGCAGC 59.625 55.000 0.00 0.00 33.37 5.25
2278 6104 0.250234 TGCCTATCGTGAAAGCAGCT 59.750 50.000 0.00 0.00 0.00 4.24
2279 6105 1.339055 TGCCTATCGTGAAAGCAGCTT 60.339 47.619 0.21 0.21 0.00 3.74
2280 6106 1.063174 GCCTATCGTGAAAGCAGCTTG 59.937 52.381 8.88 0.00 0.00 4.01
2281 6107 1.063174 CCTATCGTGAAAGCAGCTTGC 59.937 52.381 8.88 7.44 45.46 4.01
2291 6117 1.647629 GCAGCTTGCATCCATCTCG 59.352 57.895 0.00 0.00 44.26 4.04
2292 6118 1.647629 CAGCTTGCATCCATCTCGC 59.352 57.895 0.00 0.00 0.00 5.03
2293 6119 1.093496 CAGCTTGCATCCATCTCGCA 61.093 55.000 0.00 0.00 0.00 5.10
2294 6120 0.393402 AGCTTGCATCCATCTCGCAA 60.393 50.000 0.00 0.00 43.02 4.85
2296 6122 2.784547 TTGCATCCATCTCGCAAGG 58.215 52.632 0.00 0.00 40.54 3.61
2297 6123 1.378882 TTGCATCCATCTCGCAAGGC 61.379 55.000 0.00 0.00 40.54 4.35
2298 6124 1.820906 GCATCCATCTCGCAAGGCA 60.821 57.895 0.00 0.00 38.47 4.75
2299 6125 2.020131 CATCCATCTCGCAAGGCAC 58.980 57.895 0.00 0.00 38.47 5.01
2300 6126 0.745486 CATCCATCTCGCAAGGCACA 60.745 55.000 0.00 0.00 38.47 4.57
2301 6127 0.035152 ATCCATCTCGCAAGGCACAA 60.035 50.000 0.00 0.00 38.47 3.33
2302 6128 0.250684 TCCATCTCGCAAGGCACAAA 60.251 50.000 0.00 0.00 38.47 2.83
2303 6129 0.597568 CCATCTCGCAAGGCACAAAA 59.402 50.000 0.00 0.00 38.47 2.44
2304 6130 1.203052 CCATCTCGCAAGGCACAAAAT 59.797 47.619 0.00 0.00 38.47 1.82
2305 6131 2.523015 CATCTCGCAAGGCACAAAATC 58.477 47.619 0.00 0.00 38.47 2.17
2306 6132 1.896220 TCTCGCAAGGCACAAAATCT 58.104 45.000 0.00 0.00 38.47 2.40
2307 6133 2.229792 TCTCGCAAGGCACAAAATCTT 58.770 42.857 0.00 0.00 38.47 2.40
2308 6134 2.622942 TCTCGCAAGGCACAAAATCTTT 59.377 40.909 0.00 0.00 38.47 2.52
2309 6135 2.727798 CTCGCAAGGCACAAAATCTTTG 59.272 45.455 0.00 0.00 38.47 2.77
2310 6136 2.100584 TCGCAAGGCACAAAATCTTTGT 59.899 40.909 0.00 0.00 38.47 2.83
2311 6137 2.865551 CGCAAGGCACAAAATCTTTGTT 59.134 40.909 2.06 0.00 0.00 2.83
2312 6138 3.309410 CGCAAGGCACAAAATCTTTGTTT 59.691 39.130 2.06 0.00 0.00 2.83
2313 6139 4.201802 CGCAAGGCACAAAATCTTTGTTTT 60.202 37.500 2.06 0.00 0.00 2.43
2314 6140 5.006165 CGCAAGGCACAAAATCTTTGTTTTA 59.994 36.000 2.06 0.00 30.56 1.52
2315 6141 6.292811 CGCAAGGCACAAAATCTTTGTTTTAT 60.293 34.615 2.06 0.00 30.56 1.40
2316 6142 7.071414 GCAAGGCACAAAATCTTTGTTTTATC 58.929 34.615 2.06 0.00 30.56 1.75
2317 6143 7.041848 GCAAGGCACAAAATCTTTGTTTTATCT 60.042 33.333 2.06 0.00 30.56 1.98
2318 6144 7.951530 AGGCACAAAATCTTTGTTTTATCTG 57.048 32.000 2.06 0.00 30.56 2.90
2319 6145 6.930722 AGGCACAAAATCTTTGTTTTATCTGG 59.069 34.615 2.06 0.00 30.56 3.86
2320 6146 6.928492 GGCACAAAATCTTTGTTTTATCTGGA 59.072 34.615 2.06 0.00 30.56 3.86
2321 6147 7.440856 GGCACAAAATCTTTGTTTTATCTGGAA 59.559 33.333 2.06 0.00 30.56 3.53
2322 6148 8.825745 GCACAAAATCTTTGTTTTATCTGGAAA 58.174 29.630 2.06 0.00 30.56 3.13
2347 6173 6.782082 AAAAAGAAAGATGGGGATAGAAGC 57.218 37.500 0.00 0.00 0.00 3.86
2348 6174 4.445557 AAGAAAGATGGGGATAGAAGCC 57.554 45.455 0.00 0.00 0.00 4.35
2349 6175 3.674477 AGAAAGATGGGGATAGAAGCCT 58.326 45.455 0.00 0.00 0.00 4.58
2350 6176 3.393941 AGAAAGATGGGGATAGAAGCCTG 59.606 47.826 0.00 0.00 0.00 4.85
2351 6177 2.803285 AGATGGGGATAGAAGCCTGA 57.197 50.000 0.00 0.00 0.00 3.86
2352 6178 2.618794 AGATGGGGATAGAAGCCTGAG 58.381 52.381 0.00 0.00 0.00 3.35
2353 6179 1.627834 GATGGGGATAGAAGCCTGAGG 59.372 57.143 0.00 0.00 0.00 3.86
2354 6180 0.642156 TGGGGATAGAAGCCTGAGGA 59.358 55.000 0.65 0.00 0.00 3.71
2355 6181 1.009552 TGGGGATAGAAGCCTGAGGAA 59.990 52.381 0.65 0.00 0.00 3.36
2356 6182 2.127708 GGGGATAGAAGCCTGAGGAAA 58.872 52.381 0.65 0.00 0.00 3.13
2357 6183 2.105649 GGGGATAGAAGCCTGAGGAAAG 59.894 54.545 0.65 0.00 0.00 2.62
2358 6184 3.041946 GGGATAGAAGCCTGAGGAAAGA 58.958 50.000 0.65 0.00 0.00 2.52
2359 6185 3.070878 GGGATAGAAGCCTGAGGAAAGAG 59.929 52.174 0.65 0.00 0.00 2.85
2360 6186 3.494223 GGATAGAAGCCTGAGGAAAGAGC 60.494 52.174 0.65 0.00 0.00 4.09
2361 6187 1.655372 AGAAGCCTGAGGAAAGAGCT 58.345 50.000 0.65 0.00 34.64 4.09
2362 6188 1.278699 AGAAGCCTGAGGAAAGAGCTG 59.721 52.381 0.65 0.00 33.18 4.24
2363 6189 0.322366 AAGCCTGAGGAAAGAGCTGC 60.322 55.000 0.65 0.00 33.18 5.25
2364 6190 2.105466 GCCTGAGGAAAGAGCTGCG 61.105 63.158 0.65 0.00 0.00 5.18
2365 6191 2.105466 CCTGAGGAAAGAGCTGCGC 61.105 63.158 0.00 0.00 0.00 6.09
2366 6192 2.046892 TGAGGAAAGAGCTGCGCC 60.047 61.111 4.18 0.00 0.00 6.53
2367 6193 2.267324 GAGGAAAGAGCTGCGCCT 59.733 61.111 4.18 0.00 0.00 5.52
2368 6194 1.813337 GAGGAAAGAGCTGCGCCTC 60.813 63.158 4.18 5.05 38.45 4.70
2369 6195 3.191539 GGAAAGAGCTGCGCCTCG 61.192 66.667 4.18 0.00 36.95 4.63
2370 6196 3.191539 GAAAGAGCTGCGCCTCGG 61.192 66.667 4.18 0.00 36.95 4.63
2371 6197 3.941657 GAAAGAGCTGCGCCTCGGT 62.942 63.158 4.18 0.00 36.95 4.69
2372 6198 2.558554 GAAAGAGCTGCGCCTCGGTA 62.559 60.000 4.18 0.00 36.95 4.02
2373 6199 2.564553 AAAGAGCTGCGCCTCGGTAG 62.565 60.000 4.18 0.00 36.95 3.18
2374 6200 3.518998 GAGCTGCGCCTCGGTAGA 61.519 66.667 4.18 0.00 0.00 2.59
2375 6201 3.477224 GAGCTGCGCCTCGGTAGAG 62.477 68.421 4.18 0.00 43.98 2.43
2390 6216 3.105659 GAGAAATGCTCTGCCCGC 58.894 61.111 0.00 0.00 40.61 6.13
2391 6217 2.439156 AGAAATGCTCTGCCCGCC 60.439 61.111 0.00 0.00 31.12 6.13
2392 6218 3.521796 GAAATGCTCTGCCCGCCC 61.522 66.667 0.00 0.00 0.00 6.13
2404 6230 4.812476 CCGCCCGCTCGTGAATGA 62.812 66.667 0.00 0.00 0.00 2.57
2405 6231 2.813474 CGCCCGCTCGTGAATGAA 60.813 61.111 0.00 0.00 0.00 2.57
2406 6232 2.387445 CGCCCGCTCGTGAATGAAA 61.387 57.895 0.00 0.00 0.00 2.69
2407 6233 1.134694 GCCCGCTCGTGAATGAAAC 59.865 57.895 0.00 0.00 0.00 2.78
2408 6234 1.794222 CCCGCTCGTGAATGAAACC 59.206 57.895 0.00 0.00 0.00 3.27
2409 6235 1.419922 CCGCTCGTGAATGAAACCG 59.580 57.895 0.00 0.00 0.00 4.44
2410 6236 1.011968 CCGCTCGTGAATGAAACCGA 61.012 55.000 0.00 0.00 0.00 4.69
2411 6237 0.093026 CGCTCGTGAATGAAACCGAC 59.907 55.000 0.00 0.00 0.00 4.79
2412 6238 0.093026 GCTCGTGAATGAAACCGACG 59.907 55.000 0.00 0.00 0.00 5.12
2413 6239 0.713883 CTCGTGAATGAAACCGACGG 59.286 55.000 13.61 13.61 0.00 4.79
2414 6240 0.032403 TCGTGAATGAAACCGACGGT 59.968 50.000 15.37 15.37 37.65 4.83
2415 6241 0.162933 CGTGAATGAAACCGACGGTG 59.837 55.000 22.53 0.00 35.34 4.94
2416 6242 0.515564 GTGAATGAAACCGACGGTGG 59.484 55.000 22.53 0.00 35.34 4.61
2417 6243 0.604243 TGAATGAAACCGACGGTGGG 60.604 55.000 22.53 7.72 35.34 4.61
2418 6244 0.604511 GAATGAAACCGACGGTGGGT 60.605 55.000 22.53 9.21 40.20 4.51
2419 6245 0.686224 AATGAAACCGACGGTGGGTA 59.314 50.000 22.53 8.13 36.57 3.69
2420 6246 0.906775 ATGAAACCGACGGTGGGTAT 59.093 50.000 22.53 10.17 36.57 2.73
2421 6247 0.686224 TGAAACCGACGGTGGGTATT 59.314 50.000 22.53 10.75 36.57 1.89
2422 6248 1.338011 TGAAACCGACGGTGGGTATTC 60.338 52.381 22.53 19.50 36.57 1.75
2423 6249 0.686224 AAACCGACGGTGGGTATTCA 59.314 50.000 22.53 0.00 36.57 2.57
2424 6250 0.686224 AACCGACGGTGGGTATTCAA 59.314 50.000 22.53 0.00 36.57 2.69
2425 6251 0.906775 ACCGACGGTGGGTATTCAAT 59.093 50.000 21.02 0.00 35.58 2.57
2429 6255 3.431207 CCGACGGTGGGTATTCAATAGTT 60.431 47.826 5.48 0.00 0.00 2.24
2436 6262 4.947388 GTGGGTATTCAATAGTTCCAAGCA 59.053 41.667 0.00 0.00 0.00 3.91
2449 6275 1.164411 CCAAGCAACTGCCGAATACA 58.836 50.000 0.00 0.00 43.38 2.29
2457 6287 4.165779 CAACTGCCGAATACAATTGTTCC 58.834 43.478 17.78 5.52 0.00 3.62
2526 6385 7.602265 ACAATTTTCTGTTGCTTTTAAGTGTGT 59.398 29.630 0.00 0.00 0.00 3.72
2527 6386 8.442384 CAATTTTCTGTTGCTTTTAAGTGTGTT 58.558 29.630 0.00 0.00 0.00 3.32
2545 6404 4.263506 TGTGTTGTCCATTTTTGGGGTTTT 60.264 37.500 0.00 0.00 0.00 2.43
2561 6420 3.365565 GGGTTTTGATTATCGTTGTGCGT 60.366 43.478 0.00 0.00 42.13 5.24
2719 6578 4.783621 GGTCCCCGCCCCGTTTAC 62.784 72.222 0.00 0.00 0.00 2.01
2720 6579 4.783621 GTCCCCGCCCCGTTTACC 62.784 72.222 0.00 0.00 0.00 2.85
2726 6585 2.674033 GCCCCGTTTACCCACACC 60.674 66.667 0.00 0.00 0.00 4.16
2727 6586 3.163503 CCCCGTTTACCCACACCT 58.836 61.111 0.00 0.00 0.00 4.00
2728 6587 1.457165 CCCCGTTTACCCACACCTT 59.543 57.895 0.00 0.00 0.00 3.50
2730 6589 0.952010 CCCGTTTACCCACACCTTCG 60.952 60.000 0.00 0.00 0.00 3.79
2735 6605 1.746322 TTACCCACACCTTCGCGTGA 61.746 55.000 5.77 0.00 37.20 4.35
2736 6606 2.149803 TACCCACACCTTCGCGTGAG 62.150 60.000 5.77 5.59 37.20 3.51
2804 6689 1.593787 CCGTGAGAGGATGTGTGCT 59.406 57.895 0.00 0.00 0.00 4.40
2810 6701 2.637382 TGAGAGGATGTGTGCTTAACCA 59.363 45.455 0.00 0.00 0.00 3.67
2813 6704 1.985159 AGGATGTGTGCTTAACCAGGA 59.015 47.619 0.00 0.00 0.00 3.86
2888 6798 4.712873 CGCCGGCGTGAACGAAAC 62.713 66.667 39.71 0.00 43.02 2.78
3002 6918 2.279851 CGTCACGCTTCACACCCA 60.280 61.111 0.00 0.00 0.00 4.51
3041 6958 1.139455 ACTTCCGACCTTTCCGTTTCA 59.861 47.619 0.00 0.00 0.00 2.69
3042 6959 1.798813 CTTCCGACCTTTCCGTTTCAG 59.201 52.381 0.00 0.00 0.00 3.02
3043 6960 1.042229 TCCGACCTTTCCGTTTCAGA 58.958 50.000 0.00 0.00 0.00 3.27
3044 6961 1.413445 TCCGACCTTTCCGTTTCAGAA 59.587 47.619 0.00 0.00 0.00 3.02
3045 6962 2.158928 TCCGACCTTTCCGTTTCAGAAA 60.159 45.455 0.00 0.00 0.00 2.52
3046 6963 2.223377 CCGACCTTTCCGTTTCAGAAAG 59.777 50.000 0.00 6.33 46.39 2.62
3047 6964 2.870411 CGACCTTTCCGTTTCAGAAAGT 59.130 45.455 11.19 0.00 45.72 2.66
3048 6965 3.311596 CGACCTTTCCGTTTCAGAAAGTT 59.688 43.478 11.19 0.00 45.72 2.66
3049 6966 4.508861 CGACCTTTCCGTTTCAGAAAGTTA 59.491 41.667 11.19 0.00 45.72 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.024552 ACTAGACGTCGGTTTATTTTACCA 57.975 37.500 10.46 0.00 35.31 3.25
109 112 2.116125 AGGGCAAAAGCGGCTTCT 59.884 55.556 16.70 5.36 0.00 2.85
318 338 1.216678 AGAGATGACACCGATCTCCCT 59.783 52.381 7.28 0.00 44.82 4.20
322 342 5.042463 TCTTCTAGAGATGACACCGATCT 57.958 43.478 0.00 0.00 32.63 2.75
323 343 5.757886 CTTCTTCTAGAGATGACACCGATC 58.242 45.833 0.00 0.00 33.49 3.69
324 344 4.037446 GCTTCTTCTAGAGATGACACCGAT 59.963 45.833 0.00 0.00 33.49 4.18
325 345 3.378742 GCTTCTTCTAGAGATGACACCGA 59.621 47.826 0.00 0.00 33.49 4.69
326 346 3.380004 AGCTTCTTCTAGAGATGACACCG 59.620 47.826 0.00 0.00 33.49 4.94
327 347 4.202111 GGAGCTTCTTCTAGAGATGACACC 60.202 50.000 0.00 0.00 33.49 4.16
329 349 4.400884 GTGGAGCTTCTTCTAGAGATGACA 59.599 45.833 0.00 0.00 33.49 3.58
330 350 4.644685 AGTGGAGCTTCTTCTAGAGATGAC 59.355 45.833 0.00 0.00 33.49 3.06
471 508 0.738975 CCTTGATGATGCCACTGCTG 59.261 55.000 0.00 0.00 38.71 4.41
524 569 2.770048 CGGCCTCCATCTTCCCCT 60.770 66.667 0.00 0.00 0.00 4.79
525 570 3.878667 CCGGCCTCCATCTTCCCC 61.879 72.222 0.00 0.00 0.00 4.81
526 571 2.768344 TCCGGCCTCCATCTTCCC 60.768 66.667 0.00 0.00 0.00 3.97
591 664 2.976494 GATATGGGCGTGGTTGGGGG 62.976 65.000 0.00 0.00 0.00 5.40
592 665 1.528309 GATATGGGCGTGGTTGGGG 60.528 63.158 0.00 0.00 0.00 4.96
593 666 1.528309 GGATATGGGCGTGGTTGGG 60.528 63.158 0.00 0.00 0.00 4.12
594 667 1.891919 CGGATATGGGCGTGGTTGG 60.892 63.158 0.00 0.00 0.00 3.77
595 668 1.891919 CCGGATATGGGCGTGGTTG 60.892 63.158 0.00 0.00 0.00 3.77
596 669 2.372074 ACCGGATATGGGCGTGGTT 61.372 57.895 9.46 0.00 0.00 3.67
597 670 2.766651 ACCGGATATGGGCGTGGT 60.767 61.111 9.46 0.00 0.00 4.16
598 671 2.280797 CACCGGATATGGGCGTGG 60.281 66.667 9.46 0.00 0.00 4.94
599 672 2.972505 GCACCGGATATGGGCGTG 60.973 66.667 9.46 0.00 0.00 5.34
600 673 2.337879 AATGCACCGGATATGGGCGT 62.338 55.000 9.46 0.00 0.00 5.68
601 674 1.577328 GAATGCACCGGATATGGGCG 61.577 60.000 9.46 0.00 0.00 6.13
602 675 1.244019 GGAATGCACCGGATATGGGC 61.244 60.000 9.46 1.99 0.00 5.36
603 676 0.609131 GGGAATGCACCGGATATGGG 60.609 60.000 9.46 0.00 0.00 4.00
604 677 0.110295 TGGGAATGCACCGGATATGG 59.890 55.000 9.46 0.00 0.00 2.74
605 678 2.205022 ATGGGAATGCACCGGATATG 57.795 50.000 9.46 0.00 0.00 1.78
606 679 3.181329 TCTATGGGAATGCACCGGATAT 58.819 45.455 9.46 0.00 0.00 1.63
607 680 2.615391 TCTATGGGAATGCACCGGATA 58.385 47.619 9.46 0.00 0.00 2.59
608 681 1.434188 TCTATGGGAATGCACCGGAT 58.566 50.000 9.46 0.00 0.00 4.18
609 682 1.208706 TTCTATGGGAATGCACCGGA 58.791 50.000 9.46 0.00 0.00 5.14
655 731 3.558674 GCCTAGAGCTCCTTTGCAA 57.441 52.632 10.93 0.00 38.99 4.08
716 812 1.064952 GCCAGCGCGGTATTTTATTGT 59.935 47.619 11.92 0.00 36.97 2.71
727 823 4.766088 GAAGCAAAGCCAGCGCGG 62.766 66.667 8.83 12.98 41.18 6.46
733 829 1.677576 CAAGACACAGAAGCAAAGCCA 59.322 47.619 0.00 0.00 0.00 4.75
778 877 7.324135 GCACAAAATTAATCAGCACAAAATTGG 59.676 33.333 0.00 0.00 0.00 3.16
792 891 5.163622 CCTGATCGTCCAGCACAAAATTAAT 60.164 40.000 0.00 0.00 32.97 1.40
831 930 0.251341 AGACTTTTGGGCAAGCCGAT 60.251 50.000 4.80 0.00 36.85 4.18
834 933 1.667722 CCAGACTTTTGGGCAAGCC 59.332 57.895 1.52 1.52 34.46 4.35
845 944 3.545703 CTTTCACTGTCAACCCAGACTT 58.454 45.455 0.00 0.00 39.27 3.01
847 946 2.222027 CCTTTCACTGTCAACCCAGAC 58.778 52.381 0.00 0.00 38.99 3.51
848 947 1.476833 GCCTTTCACTGTCAACCCAGA 60.477 52.381 0.00 0.00 36.30 3.86
849 948 0.954452 GCCTTTCACTGTCAACCCAG 59.046 55.000 0.00 0.00 38.45 4.45
853 955 2.017049 ACACTGCCTTTCACTGTCAAC 58.983 47.619 0.00 0.00 0.00 3.18
858 960 3.120546 CGTAATCACACTGCCTTTCACTG 60.121 47.826 0.00 0.00 0.00 3.66
869 971 6.592607 ACAAAATCGGTAATCGTAATCACACT 59.407 34.615 0.00 0.00 40.32 3.55
870 972 6.681178 CACAAAATCGGTAATCGTAATCACAC 59.319 38.462 0.00 0.00 40.32 3.82
871 973 6.673556 GCACAAAATCGGTAATCGTAATCACA 60.674 38.462 0.00 0.00 40.32 3.58
872 974 5.675444 GCACAAAATCGGTAATCGTAATCAC 59.325 40.000 0.00 0.00 40.32 3.06
873 975 5.351740 TGCACAAAATCGGTAATCGTAATCA 59.648 36.000 0.00 0.00 40.32 2.57
874 976 5.802064 TGCACAAAATCGGTAATCGTAATC 58.198 37.500 0.00 0.00 40.32 1.75
875 977 5.804692 TGCACAAAATCGGTAATCGTAAT 57.195 34.783 0.00 0.00 40.32 1.89
876 978 5.804692 ATGCACAAAATCGGTAATCGTAA 57.195 34.783 0.00 0.00 40.32 3.18
877 979 5.220700 GGAATGCACAAAATCGGTAATCGTA 60.221 40.000 0.00 0.00 40.32 3.43
878 980 4.438200 GGAATGCACAAAATCGGTAATCGT 60.438 41.667 0.00 0.00 40.32 3.73
879 981 4.035017 GGAATGCACAAAATCGGTAATCG 58.965 43.478 0.00 0.00 40.90 3.34
880 982 5.248870 AGGAATGCACAAAATCGGTAATC 57.751 39.130 0.00 0.00 0.00 1.75
881 983 5.659440 AAGGAATGCACAAAATCGGTAAT 57.341 34.783 0.00 0.00 0.00 1.89
882 984 5.461032 AAAGGAATGCACAAAATCGGTAA 57.539 34.783 0.00 0.00 0.00 2.85
883 985 5.226396 CAAAAGGAATGCACAAAATCGGTA 58.774 37.500 0.00 0.00 0.00 4.02
884 986 4.057432 CAAAAGGAATGCACAAAATCGGT 58.943 39.130 0.00 0.00 0.00 4.69
885 987 3.120580 GCAAAAGGAATGCACAAAATCGG 60.121 43.478 0.00 0.00 43.29 4.18
886 988 3.742369 AGCAAAAGGAATGCACAAAATCG 59.258 39.130 0.00 0.00 46.22 3.34
887 989 5.678132 AAGCAAAAGGAATGCACAAAATC 57.322 34.783 0.00 0.00 46.22 2.17
888 990 5.589452 TCAAAGCAAAAGGAATGCACAAAAT 59.411 32.000 0.00 0.00 46.22 1.82
889 991 4.940046 TCAAAGCAAAAGGAATGCACAAAA 59.060 33.333 0.00 0.00 46.22 2.44
890 992 4.511527 TCAAAGCAAAAGGAATGCACAAA 58.488 34.783 0.00 0.00 46.22 2.83
891 993 4.134379 TCAAAGCAAAAGGAATGCACAA 57.866 36.364 0.00 0.00 46.22 3.33
892 994 3.815856 TCAAAGCAAAAGGAATGCACA 57.184 38.095 0.00 0.00 46.22 4.57
893 995 4.309099 TCATCAAAGCAAAAGGAATGCAC 58.691 39.130 0.00 0.00 46.22 4.57
894 996 4.603989 TCATCAAAGCAAAAGGAATGCA 57.396 36.364 0.00 0.00 46.22 3.96
895 997 4.331717 CCATCATCAAAGCAAAAGGAATGC 59.668 41.667 0.00 0.00 44.15 3.56
896 998 4.873827 CCCATCATCAAAGCAAAAGGAATG 59.126 41.667 0.00 0.00 0.00 2.67
897 999 4.624604 GCCCATCATCAAAGCAAAAGGAAT 60.625 41.667 0.00 0.00 0.00 3.01
898 1000 3.306919 GCCCATCATCAAAGCAAAAGGAA 60.307 43.478 0.00 0.00 0.00 3.36
899 1001 2.234414 GCCCATCATCAAAGCAAAAGGA 59.766 45.455 0.00 0.00 0.00 3.36
900 1002 2.624636 GCCCATCATCAAAGCAAAAGG 58.375 47.619 0.00 0.00 0.00 3.11
901 1003 2.264813 CGCCCATCATCAAAGCAAAAG 58.735 47.619 0.00 0.00 0.00 2.27
902 1004 1.067000 CCGCCCATCATCAAAGCAAAA 60.067 47.619 0.00 0.00 0.00 2.44
903 1005 0.531657 CCGCCCATCATCAAAGCAAA 59.468 50.000 0.00 0.00 0.00 3.68
904 1006 1.321805 CCCGCCCATCATCAAAGCAA 61.322 55.000 0.00 0.00 0.00 3.91
905 1007 1.753848 CCCGCCCATCATCAAAGCA 60.754 57.895 0.00 0.00 0.00 3.91
906 1008 2.492773 CCCCGCCCATCATCAAAGC 61.493 63.158 0.00 0.00 0.00 3.51
907 1009 2.492773 GCCCCGCCCATCATCAAAG 61.493 63.158 0.00 0.00 0.00 2.77
908 1010 2.441901 GCCCCGCCCATCATCAAA 60.442 61.111 0.00 0.00 0.00 2.69
909 1011 4.873810 CGCCCCGCCCATCATCAA 62.874 66.667 0.00 0.00 0.00 2.57
911 1013 4.996434 CTCGCCCCGCCCATCATC 62.996 72.222 0.00 0.00 0.00 2.92
963 1065 3.009714 GGACGGGCCTCCTTCCTT 61.010 66.667 0.84 0.00 45.27 3.36
1000 1103 2.158667 CCCCTGGCGATAAAGTAACCAT 60.159 50.000 0.00 0.00 0.00 3.55
1004 1107 2.093341 GTGACCCCTGGCGATAAAGTAA 60.093 50.000 0.00 0.00 0.00 2.24
1024 1127 4.022155 CGATGATGATGATGGAGAGACAGT 60.022 45.833 0.00 0.00 0.00 3.55
1255 1576 0.841961 TGCCCTCCATCCTCATCAAG 59.158 55.000 0.00 0.00 0.00 3.02
1648 1969 1.203570 AGTAAACCCCCATCCTCCAGT 60.204 52.381 0.00 0.00 0.00 4.00
1946 5772 2.948315 TGTGCTGCATTGTTACAAGACA 59.052 40.909 5.27 3.51 0.00 3.41
1965 5791 3.339253 TCATGTGCTGCTAAGACATGT 57.661 42.857 22.32 0.00 44.81 3.21
1985 5811 2.402564 TGCCATCTCCTAAGCTAGCTT 58.597 47.619 31.38 31.38 39.83 3.74
2085 5911 3.073274 AGGGAACACTTGCTATTCCAC 57.927 47.619 4.73 0.00 43.21 4.02
2120 5946 1.202405 CCCATTGCGCCCATAGTTTTC 60.202 52.381 4.18 0.00 0.00 2.29
2123 5949 0.466189 CTCCCATTGCGCCCATAGTT 60.466 55.000 4.18 0.00 0.00 2.24
2124 5950 1.149174 CTCCCATTGCGCCCATAGT 59.851 57.895 4.18 0.00 0.00 2.12
2125 5951 2.263741 GCTCCCATTGCGCCCATAG 61.264 63.158 4.18 0.00 0.00 2.23
2126 5952 2.203337 GCTCCCATTGCGCCCATA 60.203 61.111 4.18 0.00 0.00 2.74
2134 5960 3.746889 TTTGCGCGGCTCCCATTG 61.747 61.111 8.83 0.00 0.00 2.82
2135 5961 3.747976 GTTTGCGCGGCTCCCATT 61.748 61.111 8.83 0.00 0.00 3.16
2136 5962 4.722700 AGTTTGCGCGGCTCCCAT 62.723 61.111 8.83 0.00 0.00 4.00
2144 5970 2.513065 AAATGCTCGGAGTTTGCGCG 62.513 55.000 0.00 0.00 0.00 6.86
2145 5971 1.067199 CAAATGCTCGGAGTTTGCGC 61.067 55.000 0.00 0.00 0.00 6.09
2146 5972 0.454957 CCAAATGCTCGGAGTTTGCG 60.455 55.000 12.98 5.78 32.84 4.85
2147 5973 0.109132 CCCAAATGCTCGGAGTTTGC 60.109 55.000 12.98 0.00 32.84 3.68
2148 5974 0.527565 CCCCAAATGCTCGGAGTTTG 59.472 55.000 6.90 9.96 33.72 2.93
2149 5975 1.250840 GCCCCAAATGCTCGGAGTTT 61.251 55.000 6.90 0.00 0.00 2.66
2150 5976 1.678970 GCCCCAAATGCTCGGAGTT 60.679 57.895 6.90 0.00 0.00 3.01
2151 5977 2.044946 GCCCCAAATGCTCGGAGT 60.045 61.111 6.90 0.00 0.00 3.85
2152 5978 2.117156 CAGCCCCAAATGCTCGGAG 61.117 63.158 0.00 0.00 36.81 4.63
2153 5979 2.045045 CAGCCCCAAATGCTCGGA 60.045 61.111 0.00 0.00 36.81 4.55
2154 5980 2.361610 ACAGCCCCAAATGCTCGG 60.362 61.111 0.00 0.00 36.81 4.63
2155 5981 2.703798 CCACAGCCCCAAATGCTCG 61.704 63.158 0.00 0.00 36.81 5.03
2156 5982 1.187567 AACCACAGCCCCAAATGCTC 61.188 55.000 0.00 0.00 36.81 4.26
2157 5983 1.152269 AACCACAGCCCCAAATGCT 60.152 52.632 0.00 0.00 40.41 3.79
2158 5984 1.004679 CAACCACAGCCCCAAATGC 60.005 57.895 0.00 0.00 0.00 3.56
2159 5985 1.120795 ACCAACCACAGCCCCAAATG 61.121 55.000 0.00 0.00 0.00 2.32
2160 5986 0.399806 AACCAACCACAGCCCCAAAT 60.400 50.000 0.00 0.00 0.00 2.32
2161 5987 0.618968 AAACCAACCACAGCCCCAAA 60.619 50.000 0.00 0.00 0.00 3.28
2162 5988 0.618968 AAAACCAACCACAGCCCCAA 60.619 50.000 0.00 0.00 0.00 4.12
2163 5989 1.002274 AAAACCAACCACAGCCCCA 59.998 52.632 0.00 0.00 0.00 4.96
2164 5990 0.759060 AGAAAACCAACCACAGCCCC 60.759 55.000 0.00 0.00 0.00 5.80
2165 5991 0.389025 CAGAAAACCAACCACAGCCC 59.611 55.000 0.00 0.00 0.00 5.19
2166 5992 0.249447 GCAGAAAACCAACCACAGCC 60.249 55.000 0.00 0.00 0.00 4.85
2167 5993 0.249447 GGCAGAAAACCAACCACAGC 60.249 55.000 0.00 0.00 0.00 4.40
2168 5994 0.389025 GGGCAGAAAACCAACCACAG 59.611 55.000 0.00 0.00 0.00 3.66
2169 5995 1.045911 GGGGCAGAAAACCAACCACA 61.046 55.000 0.00 0.00 0.00 4.17
2170 5996 0.759060 AGGGGCAGAAAACCAACCAC 60.759 55.000 0.00 0.00 0.00 4.16
2171 5997 0.031616 AAGGGGCAGAAAACCAACCA 60.032 50.000 0.00 0.00 0.00 3.67
2172 5998 1.128200 AAAGGGGCAGAAAACCAACC 58.872 50.000 0.00 0.00 0.00 3.77
2173 5999 2.560504 CAAAAGGGGCAGAAAACCAAC 58.439 47.619 0.00 0.00 0.00 3.77
2174 6000 1.488393 CCAAAAGGGGCAGAAAACCAA 59.512 47.619 0.00 0.00 0.00 3.67
2175 6001 1.127343 CCAAAAGGGGCAGAAAACCA 58.873 50.000 0.00 0.00 0.00 3.67
2185 6011 1.902765 GAAGCATGGGCCAAAAGGGG 61.903 60.000 11.89 0.00 42.56 4.79
2186 6012 0.906282 AGAAGCATGGGCCAAAAGGG 60.906 55.000 11.89 0.00 42.56 3.95
2187 6013 0.978907 AAGAAGCATGGGCCAAAAGG 59.021 50.000 11.89 1.36 42.56 3.11
2188 6014 1.403249 CGAAGAAGCATGGGCCAAAAG 60.403 52.381 11.89 4.77 42.56 2.27
2189 6015 0.602562 CGAAGAAGCATGGGCCAAAA 59.397 50.000 11.89 0.00 42.56 2.44
2190 6016 0.251121 TCGAAGAAGCATGGGCCAAA 60.251 50.000 11.89 0.00 42.56 3.28
2191 6017 0.034186 ATCGAAGAAGCATGGGCCAA 60.034 50.000 11.89 0.00 43.58 4.52
2192 6018 0.464373 GATCGAAGAAGCATGGGCCA 60.464 55.000 9.61 9.61 43.58 5.36
2193 6019 1.169034 GGATCGAAGAAGCATGGGCC 61.169 60.000 0.00 0.00 43.58 5.80
2194 6020 0.179034 AGGATCGAAGAAGCATGGGC 60.179 55.000 0.00 0.00 43.58 5.36
2195 6021 2.158842 AGAAGGATCGAAGAAGCATGGG 60.159 50.000 0.00 0.00 43.58 4.00
2196 6022 2.871022 CAGAAGGATCGAAGAAGCATGG 59.129 50.000 0.00 0.00 43.58 3.66
2197 6023 2.871022 CCAGAAGGATCGAAGAAGCATG 59.129 50.000 0.00 0.00 43.58 4.06
2198 6024 2.503356 ACCAGAAGGATCGAAGAAGCAT 59.497 45.455 0.00 0.00 38.31 3.79
2199 6025 1.902508 ACCAGAAGGATCGAAGAAGCA 59.097 47.619 0.00 0.00 38.31 3.91
2200 6026 2.682155 ACCAGAAGGATCGAAGAAGC 57.318 50.000 0.00 0.00 38.31 3.86
2201 6027 4.158764 ACACTACCAGAAGGATCGAAGAAG 59.841 45.833 0.00 0.00 38.31 2.85
2202 6028 4.087182 ACACTACCAGAAGGATCGAAGAA 58.913 43.478 0.00 0.00 38.31 2.52
2203 6029 3.698289 ACACTACCAGAAGGATCGAAGA 58.302 45.455 0.00 0.00 39.05 2.87
2204 6030 4.177026 CAACACTACCAGAAGGATCGAAG 58.823 47.826 0.00 0.00 38.69 3.79
2205 6031 3.056107 CCAACACTACCAGAAGGATCGAA 60.056 47.826 0.00 0.00 38.69 3.71
2206 6032 2.496070 CCAACACTACCAGAAGGATCGA 59.504 50.000 0.00 0.00 38.69 3.59
2207 6033 2.233922 ACCAACACTACCAGAAGGATCG 59.766 50.000 0.00 0.00 38.69 3.69
2208 6034 3.983044 ACCAACACTACCAGAAGGATC 57.017 47.619 0.00 0.00 38.69 3.36
2209 6035 5.487488 TGATAACCAACACTACCAGAAGGAT 59.513 40.000 0.00 0.00 38.69 3.24
2210 6036 4.841813 TGATAACCAACACTACCAGAAGGA 59.158 41.667 0.00 0.00 38.69 3.36
2211 6037 5.160607 TGATAACCAACACTACCAGAAGG 57.839 43.478 0.00 0.00 42.21 3.46
2212 6038 5.178797 CCTGATAACCAACACTACCAGAAG 58.821 45.833 0.00 0.00 0.00 2.85
2213 6039 4.019681 CCCTGATAACCAACACTACCAGAA 60.020 45.833 0.00 0.00 0.00 3.02
2214 6040 3.517901 CCCTGATAACCAACACTACCAGA 59.482 47.826 0.00 0.00 0.00 3.86
2215 6041 3.370527 CCCCTGATAACCAACACTACCAG 60.371 52.174 0.00 0.00 0.00 4.00
2216 6042 2.574369 CCCCTGATAACCAACACTACCA 59.426 50.000 0.00 0.00 0.00 3.25
2217 6043 2.682858 GCCCCTGATAACCAACACTACC 60.683 54.545 0.00 0.00 0.00 3.18
2218 6044 2.640184 GCCCCTGATAACCAACACTAC 58.360 52.381 0.00 0.00 0.00 2.73
2219 6045 1.208535 CGCCCCTGATAACCAACACTA 59.791 52.381 0.00 0.00 0.00 2.74
2220 6046 0.035439 CGCCCCTGATAACCAACACT 60.035 55.000 0.00 0.00 0.00 3.55
2221 6047 1.029947 CCGCCCCTGATAACCAACAC 61.030 60.000 0.00 0.00 0.00 3.32
2222 6048 1.202099 TCCGCCCCTGATAACCAACA 61.202 55.000 0.00 0.00 0.00 3.33
2223 6049 0.034863 TTCCGCCCCTGATAACCAAC 60.035 55.000 0.00 0.00 0.00 3.77
2224 6050 0.699399 TTTCCGCCCCTGATAACCAA 59.301 50.000 0.00 0.00 0.00 3.67
2225 6051 0.699399 TTTTCCGCCCCTGATAACCA 59.301 50.000 0.00 0.00 0.00 3.67
2226 6052 1.340697 ACTTTTCCGCCCCTGATAACC 60.341 52.381 0.00 0.00 0.00 2.85
2227 6053 2.124277 ACTTTTCCGCCCCTGATAAC 57.876 50.000 0.00 0.00 0.00 1.89
2228 6054 2.040545 TCAACTTTTCCGCCCCTGATAA 59.959 45.455 0.00 0.00 0.00 1.75
2229 6055 1.631388 TCAACTTTTCCGCCCCTGATA 59.369 47.619 0.00 0.00 0.00 2.15
2230 6056 0.404040 TCAACTTTTCCGCCCCTGAT 59.596 50.000 0.00 0.00 0.00 2.90
2231 6057 0.536460 GTCAACTTTTCCGCCCCTGA 60.536 55.000 0.00 0.00 0.00 3.86
2232 6058 1.852067 CGTCAACTTTTCCGCCCCTG 61.852 60.000 0.00 0.00 0.00 4.45
2233 6059 1.599797 CGTCAACTTTTCCGCCCCT 60.600 57.895 0.00 0.00 0.00 4.79
2234 6060 2.951458 CGTCAACTTTTCCGCCCC 59.049 61.111 0.00 0.00 0.00 5.80
2235 6061 1.862602 ATGCGTCAACTTTTCCGCCC 61.863 55.000 0.00 0.00 45.18 6.13
2236 6062 0.729140 CATGCGTCAACTTTTCCGCC 60.729 55.000 0.00 0.00 45.18 6.13
2237 6063 0.729140 CCATGCGTCAACTTTTCCGC 60.729 55.000 0.00 0.00 45.92 5.54
2238 6064 0.109781 CCCATGCGTCAACTTTTCCG 60.110 55.000 0.00 0.00 0.00 4.30
2239 6065 0.243636 CCCCATGCGTCAACTTTTCC 59.756 55.000 0.00 0.00 0.00 3.13
2240 6066 0.958822 ACCCCATGCGTCAACTTTTC 59.041 50.000 0.00 0.00 0.00 2.29
2241 6067 0.673437 CACCCCATGCGTCAACTTTT 59.327 50.000 0.00 0.00 0.00 2.27
2242 6068 1.805428 GCACCCCATGCGTCAACTTT 61.805 55.000 0.00 0.00 46.55 2.66
2243 6069 2.268076 GCACCCCATGCGTCAACTT 61.268 57.895 0.00 0.00 46.55 2.66
2244 6070 2.672996 GCACCCCATGCGTCAACT 60.673 61.111 0.00 0.00 46.55 3.16
2252 6078 0.180171 TTCACGATAGGCACCCCATG 59.820 55.000 0.00 0.00 43.77 3.66
2253 6079 0.916086 TTTCACGATAGGCACCCCAT 59.084 50.000 0.00 0.00 43.77 4.00
2254 6080 0.251916 CTTTCACGATAGGCACCCCA 59.748 55.000 0.00 0.00 43.77 4.96
2255 6081 1.095807 GCTTTCACGATAGGCACCCC 61.096 60.000 0.00 0.00 43.77 4.95
2256 6082 0.392461 TGCTTTCACGATAGGCACCC 60.392 55.000 0.00 0.00 43.77 4.61
2257 6083 1.009829 CTGCTTTCACGATAGGCACC 58.990 55.000 0.00 0.00 43.77 5.01
2258 6084 0.375106 GCTGCTTTCACGATAGGCAC 59.625 55.000 0.00 0.00 43.77 5.01
2259 6085 0.250234 AGCTGCTTTCACGATAGGCA 59.750 50.000 0.00 0.00 43.77 4.75
2260 6086 1.063174 CAAGCTGCTTTCACGATAGGC 59.937 52.381 13.10 0.00 43.77 3.93
2261 6087 1.063174 GCAAGCTGCTTTCACGATAGG 59.937 52.381 13.10 0.00 40.96 2.57
2262 6088 1.733912 TGCAAGCTGCTTTCACGATAG 59.266 47.619 13.10 0.00 45.31 2.08
2263 6089 1.807139 TGCAAGCTGCTTTCACGATA 58.193 45.000 13.10 0.00 45.31 2.92
2264 6090 1.131883 GATGCAAGCTGCTTTCACGAT 59.868 47.619 16.58 1.64 45.31 3.73
2265 6091 0.518636 GATGCAAGCTGCTTTCACGA 59.481 50.000 16.58 0.00 45.31 4.35
2266 6092 0.455633 GGATGCAAGCTGCTTTCACG 60.456 55.000 16.58 5.05 45.31 4.35
2267 6093 0.599558 TGGATGCAAGCTGCTTTCAC 59.400 50.000 16.58 10.53 45.31 3.18
2268 6094 1.475280 GATGGATGCAAGCTGCTTTCA 59.525 47.619 16.57 16.57 45.31 2.69
2269 6095 1.749634 AGATGGATGCAAGCTGCTTTC 59.250 47.619 13.10 8.81 45.31 2.62
2270 6096 1.749634 GAGATGGATGCAAGCTGCTTT 59.250 47.619 13.10 0.00 45.31 3.51
2271 6097 1.390565 GAGATGGATGCAAGCTGCTT 58.609 50.000 9.53 9.53 45.31 3.91
2272 6098 0.814410 CGAGATGGATGCAAGCTGCT 60.814 55.000 0.00 0.00 45.31 4.24
2273 6099 1.647629 CGAGATGGATGCAAGCTGC 59.352 57.895 0.00 0.00 45.29 5.25
2274 6100 1.093496 TGCGAGATGGATGCAAGCTG 61.093 55.000 0.00 0.00 35.33 4.24
2275 6101 0.393402 TTGCGAGATGGATGCAAGCT 60.393 50.000 0.00 0.00 43.13 3.74
2276 6102 2.100846 TTGCGAGATGGATGCAAGC 58.899 52.632 0.00 0.00 43.13 4.01
2278 6104 1.378882 GCCTTGCGAGATGGATGCAA 61.379 55.000 1.22 0.00 45.54 4.08
2279 6105 1.820906 GCCTTGCGAGATGGATGCA 60.821 57.895 1.22 0.00 36.72 3.96
2280 6106 1.820906 TGCCTTGCGAGATGGATGC 60.821 57.895 1.22 0.00 0.00 3.91
2281 6107 0.745486 TGTGCCTTGCGAGATGGATG 60.745 55.000 1.22 0.00 0.00 3.51
2282 6108 0.035152 TTGTGCCTTGCGAGATGGAT 60.035 50.000 1.22 0.00 0.00 3.41
2283 6109 0.250684 TTTGTGCCTTGCGAGATGGA 60.251 50.000 1.22 0.00 0.00 3.41
2284 6110 0.597568 TTTTGTGCCTTGCGAGATGG 59.402 50.000 1.22 0.00 0.00 3.51
2285 6111 2.163010 AGATTTTGTGCCTTGCGAGATG 59.837 45.455 1.22 0.00 0.00 2.90
2286 6112 2.440409 AGATTTTGTGCCTTGCGAGAT 58.560 42.857 1.22 0.00 0.00 2.75
2287 6113 1.896220 AGATTTTGTGCCTTGCGAGA 58.104 45.000 1.22 0.00 0.00 4.04
2288 6114 2.712057 AAGATTTTGTGCCTTGCGAG 57.288 45.000 0.00 0.00 0.00 5.03
2289 6115 2.100584 ACAAAGATTTTGTGCCTTGCGA 59.899 40.909 6.40 0.00 0.00 5.10
2290 6116 2.472816 ACAAAGATTTTGTGCCTTGCG 58.527 42.857 6.40 0.00 0.00 4.85
2291 6117 4.880886 AAACAAAGATTTTGTGCCTTGC 57.119 36.364 7.84 0.00 32.22 4.01
2292 6118 8.277713 CAGATAAAACAAAGATTTTGTGCCTTG 58.722 33.333 7.84 0.78 33.80 3.61
2293 6119 7.442062 CCAGATAAAACAAAGATTTTGTGCCTT 59.558 33.333 7.84 5.45 33.80 4.35
2294 6120 6.930722 CCAGATAAAACAAAGATTTTGTGCCT 59.069 34.615 7.84 0.00 33.80 4.75
2295 6121 6.928492 TCCAGATAAAACAAAGATTTTGTGCC 59.072 34.615 7.84 0.00 33.80 5.01
2296 6122 7.945033 TCCAGATAAAACAAAGATTTTGTGC 57.055 32.000 7.84 0.00 33.80 4.57
2324 6150 5.658634 GGCTTCTATCCCCATCTTTCTTTTT 59.341 40.000 0.00 0.00 0.00 1.94
2325 6151 5.043806 AGGCTTCTATCCCCATCTTTCTTTT 60.044 40.000 0.00 0.00 0.00 2.27
2326 6152 4.480166 AGGCTTCTATCCCCATCTTTCTTT 59.520 41.667 0.00 0.00 0.00 2.52
2327 6153 4.050757 AGGCTTCTATCCCCATCTTTCTT 58.949 43.478 0.00 0.00 0.00 2.52
2328 6154 3.393941 CAGGCTTCTATCCCCATCTTTCT 59.606 47.826 0.00 0.00 0.00 2.52
2329 6155 3.392616 TCAGGCTTCTATCCCCATCTTTC 59.607 47.826 0.00 0.00 0.00 2.62
2330 6156 3.393941 CTCAGGCTTCTATCCCCATCTTT 59.606 47.826 0.00 0.00 0.00 2.52
2331 6157 2.978278 CTCAGGCTTCTATCCCCATCTT 59.022 50.000 0.00 0.00 0.00 2.40
2332 6158 2.618794 CTCAGGCTTCTATCCCCATCT 58.381 52.381 0.00 0.00 0.00 2.90
2333 6159 1.627834 CCTCAGGCTTCTATCCCCATC 59.372 57.143 0.00 0.00 0.00 3.51
2334 6160 1.224120 TCCTCAGGCTTCTATCCCCAT 59.776 52.381 0.00 0.00 0.00 4.00
2335 6161 0.642156 TCCTCAGGCTTCTATCCCCA 59.358 55.000 0.00 0.00 0.00 4.96
2336 6162 1.807814 TTCCTCAGGCTTCTATCCCC 58.192 55.000 0.00 0.00 0.00 4.81
2337 6163 3.041946 TCTTTCCTCAGGCTTCTATCCC 58.958 50.000 0.00 0.00 0.00 3.85
2338 6164 3.494223 GCTCTTTCCTCAGGCTTCTATCC 60.494 52.174 0.00 0.00 0.00 2.59
2339 6165 3.387699 AGCTCTTTCCTCAGGCTTCTATC 59.612 47.826 0.00 0.00 0.00 2.08
2340 6166 3.134442 CAGCTCTTTCCTCAGGCTTCTAT 59.866 47.826 0.00 0.00 0.00 1.98
2341 6167 2.499289 CAGCTCTTTCCTCAGGCTTCTA 59.501 50.000 0.00 0.00 0.00 2.10
2342 6168 1.278699 CAGCTCTTTCCTCAGGCTTCT 59.721 52.381 0.00 0.00 0.00 2.85
2343 6169 1.736612 CAGCTCTTTCCTCAGGCTTC 58.263 55.000 0.00 0.00 0.00 3.86
2344 6170 0.322366 GCAGCTCTTTCCTCAGGCTT 60.322 55.000 0.00 0.00 0.00 4.35
2345 6171 1.299321 GCAGCTCTTTCCTCAGGCT 59.701 57.895 0.00 0.00 0.00 4.58
2346 6172 2.105466 CGCAGCTCTTTCCTCAGGC 61.105 63.158 0.00 0.00 0.00 4.85
2347 6173 4.198625 CGCAGCTCTTTCCTCAGG 57.801 61.111 0.00 0.00 0.00 3.86
2360 6186 0.103208 ATTTCTCTACCGAGGCGCAG 59.897 55.000 10.83 0.00 37.86 5.18
2361 6187 0.179111 CATTTCTCTACCGAGGCGCA 60.179 55.000 10.83 0.00 37.86 6.09
2362 6188 1.491505 GCATTTCTCTACCGAGGCGC 61.492 60.000 0.00 0.00 37.86 6.53
2363 6189 0.103208 AGCATTTCTCTACCGAGGCG 59.897 55.000 0.00 0.00 37.86 5.52
2364 6190 1.859383 GAGCATTTCTCTACCGAGGC 58.141 55.000 0.00 0.00 38.78 4.70
2373 6199 2.476320 GGCGGGCAGAGCATTTCTC 61.476 63.158 0.00 0.00 42.21 2.87
2374 6200 2.439156 GGCGGGCAGAGCATTTCT 60.439 61.111 0.00 0.00 36.25 2.52
2375 6201 3.521796 GGGCGGGCAGAGCATTTC 61.522 66.667 3.27 0.00 36.08 2.17
2387 6213 4.812476 TCATTCACGAGCGGGCGG 62.812 66.667 0.00 0.00 35.12 6.13
2388 6214 2.387445 TTTCATTCACGAGCGGGCG 61.387 57.895 0.00 0.00 37.29 6.13
2389 6215 1.134694 GTTTCATTCACGAGCGGGC 59.865 57.895 0.00 0.00 0.00 6.13
2390 6216 1.794222 GGTTTCATTCACGAGCGGG 59.206 57.895 0.00 0.00 0.00 6.13
2391 6217 1.011968 TCGGTTTCATTCACGAGCGG 61.012 55.000 0.00 0.00 34.18 5.52
2392 6218 0.093026 GTCGGTTTCATTCACGAGCG 59.907 55.000 0.00 0.00 35.88 5.03
2393 6219 0.093026 CGTCGGTTTCATTCACGAGC 59.907 55.000 0.00 0.00 35.88 5.03
2394 6220 0.713883 CCGTCGGTTTCATTCACGAG 59.286 55.000 2.08 0.00 35.88 4.18
2395 6221 0.032403 ACCGTCGGTTTCATTCACGA 59.968 50.000 12.23 0.00 27.29 4.35
2396 6222 0.162933 CACCGTCGGTTTCATTCACG 59.837 55.000 15.97 0.00 31.02 4.35
2397 6223 0.515564 CCACCGTCGGTTTCATTCAC 59.484 55.000 15.97 0.00 31.02 3.18
2398 6224 0.604243 CCCACCGTCGGTTTCATTCA 60.604 55.000 15.97 0.00 31.02 2.57
2399 6225 0.604511 ACCCACCGTCGGTTTCATTC 60.605 55.000 15.97 0.00 31.02 2.67
2400 6226 0.686224 TACCCACCGTCGGTTTCATT 59.314 50.000 15.97 0.00 31.02 2.57
2401 6227 0.906775 ATACCCACCGTCGGTTTCAT 59.093 50.000 15.97 2.93 31.02 2.57
2402 6228 0.686224 AATACCCACCGTCGGTTTCA 59.314 50.000 15.97 0.30 31.02 2.69
2403 6229 1.338011 TGAATACCCACCGTCGGTTTC 60.338 52.381 15.97 15.82 31.02 2.78
2404 6230 0.686224 TGAATACCCACCGTCGGTTT 59.314 50.000 15.97 6.03 31.02 3.27
2405 6231 0.686224 TTGAATACCCACCGTCGGTT 59.314 50.000 15.97 2.78 31.02 4.44
2406 6232 0.906775 ATTGAATACCCACCGTCGGT 59.093 50.000 12.23 12.23 35.62 4.69
2407 6233 2.101917 ACTATTGAATACCCACCGTCGG 59.898 50.000 10.48 10.48 0.00 4.79
2408 6234 3.447918 ACTATTGAATACCCACCGTCG 57.552 47.619 0.00 0.00 0.00 5.12
2409 6235 4.124970 GGAACTATTGAATACCCACCGTC 58.875 47.826 0.00 0.00 0.00 4.79
2410 6236 3.520317 TGGAACTATTGAATACCCACCGT 59.480 43.478 0.00 0.00 0.00 4.83
2411 6237 4.145365 TGGAACTATTGAATACCCACCG 57.855 45.455 0.00 0.00 0.00 4.94
2412 6238 4.338400 GCTTGGAACTATTGAATACCCACC 59.662 45.833 0.00 0.00 0.00 4.61
2413 6239 4.947388 TGCTTGGAACTATTGAATACCCAC 59.053 41.667 0.00 0.00 0.00 4.61
2414 6240 5.186256 TGCTTGGAACTATTGAATACCCA 57.814 39.130 0.00 0.00 0.00 4.51
2415 6241 5.652452 AGTTGCTTGGAACTATTGAATACCC 59.348 40.000 5.74 0.00 34.29 3.69
2416 6242 6.555315 CAGTTGCTTGGAACTATTGAATACC 58.445 40.000 7.18 0.00 34.29 2.73
2417 6243 6.030228 GCAGTTGCTTGGAACTATTGAATAC 58.970 40.000 7.18 0.00 34.29 1.89
2418 6244 5.125417 GGCAGTTGCTTGGAACTATTGAATA 59.875 40.000 7.18 0.00 41.70 1.75
2419 6245 4.082026 GGCAGTTGCTTGGAACTATTGAAT 60.082 41.667 7.18 0.00 41.70 2.57
2420 6246 3.255642 GGCAGTTGCTTGGAACTATTGAA 59.744 43.478 7.18 0.00 41.70 2.69
2421 6247 2.819608 GGCAGTTGCTTGGAACTATTGA 59.180 45.455 7.18 0.00 41.70 2.57
2422 6248 2.414559 CGGCAGTTGCTTGGAACTATTG 60.415 50.000 7.18 0.00 41.70 1.90
2423 6249 1.812571 CGGCAGTTGCTTGGAACTATT 59.187 47.619 7.18 0.00 41.70 1.73
2424 6250 1.003118 TCGGCAGTTGCTTGGAACTAT 59.997 47.619 7.18 0.00 41.70 2.12
2425 6251 0.394938 TCGGCAGTTGCTTGGAACTA 59.605 50.000 7.18 0.00 41.70 2.24
2429 6255 1.271108 TGTATTCGGCAGTTGCTTGGA 60.271 47.619 3.88 0.00 41.70 3.53
2436 6262 3.119990 CGGAACAATTGTATTCGGCAGTT 60.120 43.478 12.39 0.00 0.00 3.16
2526 6385 4.844349 TCAAAACCCCAAAAATGGACAA 57.156 36.364 0.00 0.00 0.00 3.18
2527 6386 5.379706 AATCAAAACCCCAAAAATGGACA 57.620 34.783 0.00 0.00 0.00 4.02
2561 6420 6.870971 ACGCCTACTTTATGTTTTCTCAAA 57.129 33.333 0.00 0.00 0.00 2.69
2710 6569 0.607217 GAAGGTGTGGGTAAACGGGG 60.607 60.000 0.00 0.00 0.00 5.73
2762 6632 2.802667 CTCCGCTGCCGTTCGATTG 61.803 63.158 0.00 0.00 0.00 2.67
2763 6633 2.509336 CTCCGCTGCCGTTCGATT 60.509 61.111 0.00 0.00 0.00 3.34
2804 6689 2.620251 CAGGCATCGATCCTGGTTAA 57.380 50.000 24.74 0.00 45.62 2.01
2810 6701 1.330655 ACGGAACAGGCATCGATCCT 61.331 55.000 9.74 9.74 0.00 3.24
2813 6704 0.462047 GGAACGGAACAGGCATCGAT 60.462 55.000 0.00 0.00 0.00 3.59
2874 6780 1.716378 CGTTGTTTCGTTCACGCCG 60.716 57.895 0.00 0.00 39.60 6.46
2883 6789 0.383860 GCTTCCGTTCCGTTGTTTCG 60.384 55.000 0.00 0.00 0.00 3.46
2888 6798 1.574702 GGAAGGCTTCCGTTCCGTTG 61.575 60.000 29.19 0.00 43.63 4.10
2958 6873 5.289434 CAGCAAAAGACAGGACAAAAGTTTC 59.711 40.000 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.