Multiple sequence alignment - TraesCS7B01G145600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G145600 chr7B 100.000 4915 0 0 1 4915 188972377 188977291 0.000000e+00 9077
1 TraesCS7B01G145600 chr7B 98.361 122 2 0 1925 2046 535690866 535690745 1.070000e-51 215
2 TraesCS7B01G145600 chr7B 91.667 144 9 3 1925 2066 392636531 392636389 3.880000e-46 196
3 TraesCS7B01G145600 chr7B 93.701 127 8 0 732 858 117020121 117020247 1.810000e-44 191
4 TraesCS7B01G145600 chr7B 96.491 114 4 0 741 854 644912749 644912862 6.490000e-44 189
5 TraesCS7B01G145600 chr7B 92.063 126 10 0 741 866 108247590 108247465 1.410000e-40 178
6 TraesCS7B01G145600 chr7D 95.917 2327 86 4 2043 4366 212810480 212808160 0.000000e+00 3762
7 TraesCS7B01G145600 chr7D 92.165 753 26 9 856 1606 212811566 212810845 0.000000e+00 1033
8 TraesCS7B01G145600 chr7D 90.909 693 11 14 103 743 212812256 212811564 0.000000e+00 883
9 TraesCS7B01G145600 chr7D 93.223 546 36 1 4370 4915 212807429 212806885 0.000000e+00 802
10 TraesCS7B01G145600 chr7D 90.959 542 45 3 4376 4915 4908772 4908233 0.000000e+00 726
11 TraesCS7B01G145600 chr7D 94.512 328 12 1 1602 1929 212810802 212810481 7.340000e-138 501
12 TraesCS7B01G145600 chr7D 92.991 214 15 0 4155 4368 212632881 212632668 3.690000e-81 313
13 TraesCS7B01G145600 chr7D 97.521 121 3 0 1924 2044 629530387 629530507 1.790000e-49 207
14 TraesCS7B01G145600 chr7D 91.870 123 10 0 737 859 176125278 176125156 6.540000e-39 172
15 TraesCS7B01G145600 chr7D 92.308 117 8 1 738 854 33478451 33478566 1.090000e-36 165
16 TraesCS7B01G145600 chr7A 93.500 2154 95 12 2042 4156 224090919 224088772 0.000000e+00 3160
17 TraesCS7B01G145600 chr7A 92.829 753 35 6 856 1606 224092023 224091288 0.000000e+00 1074
18 TraesCS7B01G145600 chr7A 84.264 788 33 23 1 744 224092768 224092028 0.000000e+00 684
19 TraesCS7B01G145600 chr7A 93.030 330 20 2 1602 1931 224091241 224090915 3.440000e-131 479
20 TraesCS7B01G145600 chr5D 92.491 546 41 0 4370 4915 547596120 547596665 0.000000e+00 782
21 TraesCS7B01G145600 chr5D 93.953 215 12 1 4155 4368 107155061 107155275 1.710000e-84 324
22 TraesCS7B01G145600 chr5D 98.291 117 2 0 1928 2044 47283884 47284000 6.450000e-49 206
23 TraesCS7B01G145600 chr5D 98.291 117 2 0 1928 2044 462793854 462793970 6.450000e-49 206
24 TraesCS7B01G145600 chr5D 90.400 125 10 2 734 857 473359890 473359767 3.940000e-36 163
25 TraesCS7B01G145600 chr5B 92.007 538 43 0 4376 4913 94669029 94668492 0.000000e+00 756
26 TraesCS7B01G145600 chr5B 98.333 120 2 0 1928 2047 446529745 446529626 1.390000e-50 211
27 TraesCS7B01G145600 chr5B 93.478 138 7 2 1908 2044 614065025 614065161 2.320000e-48 204
28 TraesCS7B01G145600 chr5B 94.355 124 7 0 731 854 557282512 557282635 1.810000e-44 191
29 TraesCS7B01G145600 chr5B 95.763 118 4 1 741 858 547368621 547368737 6.490000e-44 189
30 TraesCS7B01G145600 chr5B 94.167 120 7 0 741 860 670833379 670833260 3.020000e-42 183
31 TraesCS7B01G145600 chr6B 91.450 538 46 0 4376 4913 696507551 696507014 0.000000e+00 739
32 TraesCS7B01G145600 chr6B 99.160 119 1 0 1928 2046 164883034 164882916 1.070000e-51 215
33 TraesCS7B01G145600 chr6B 96.800 125 4 0 739 863 43284101 43283977 4.990000e-50 209
34 TraesCS7B01G145600 chr6B 94.074 135 5 3 1927 2058 84756503 84756369 8.340000e-48 202
35 TraesCS7B01G145600 chr6B 96.552 116 4 0 739 854 35636855 35636970 5.020000e-45 193
36 TraesCS7B01G145600 chr6B 92.126 127 10 0 738 864 638921011 638920885 3.910000e-41 180
37 TraesCS7B01G145600 chr3D 91.026 546 49 0 4370 4915 154013260 154013805 0.000000e+00 737
38 TraesCS7B01G145600 chr3D 90.659 546 51 0 4370 4915 462267246 462267791 0.000000e+00 726
39 TraesCS7B01G145600 chr3D 91.705 217 16 2 4156 4370 515184973 515184757 2.880000e-77 300
40 TraesCS7B01G145600 chr3D 98.347 121 2 0 1928 2048 66262960 66262840 3.850000e-51 213
41 TraesCS7B01G145600 chr3D 95.276 127 6 0 1921 2047 570116242 570116368 8.340000e-48 202
42 TraesCS7B01G145600 chr3D 93.162 117 8 0 741 857 208640707 208640591 6.540000e-39 172
43 TraesCS7B01G145600 chr4D 90.511 548 48 3 4370 4915 45786349 45786894 0.000000e+00 721
44 TraesCS7B01G145600 chr4D 93.458 214 13 1 4155 4367 166505748 166505535 2.860000e-82 316
45 TraesCS7B01G145600 chr4D 95.312 128 4 2 1922 2048 454426386 454426260 8.340000e-48 202
46 TraesCS7B01G145600 chr4D 91.667 120 10 0 735 854 428946373 428946492 3.040000e-37 167
47 TraesCS7B01G145600 chr3A 90.511 548 48 3 4370 4915 661488619 661488074 0.000000e+00 721
48 TraesCS7B01G145600 chr6D 93.023 215 13 2 4156 4368 134333353 134333139 3.690000e-81 313
49 TraesCS7B01G145600 chr6D 93.023 215 13 2 4156 4368 134738306 134738092 3.690000e-81 313
50 TraesCS7B01G145600 chr6D 96.800 125 3 1 1922 2046 24401389 24401512 1.790000e-49 207
51 TraesCS7B01G145600 chr6D 98.305 118 2 0 1928 2045 394829744 394829861 1.790000e-49 207
52 TraesCS7B01G145600 chr6D 98.305 118 2 0 1928 2045 420763810 420763927 1.790000e-49 207
53 TraesCS7B01G145600 chr6D 97.458 118 3 0 1927 2044 293082605 293082488 8.340000e-48 202
54 TraesCS7B01G145600 chr6D 95.798 119 5 0 1927 2045 86863510 86863392 5.020000e-45 193
55 TraesCS7B01G145600 chr6D 91.667 120 10 0 740 859 48675626 48675745 3.040000e-37 167
56 TraesCS7B01G145600 chr6D 91.667 120 10 0 740 859 108860766 108860647 3.040000e-37 167
57 TraesCS7B01G145600 chr6D 92.308 117 9 0 741 857 136474714 136474598 3.040000e-37 167
58 TraesCS7B01G145600 chr6D 91.200 125 8 2 733 854 147675559 147675683 3.040000e-37 167
59 TraesCS7B01G145600 chr6D 91.667 120 10 0 742 861 354117242 354117361 3.040000e-37 167
60 TraesCS7B01G145600 chr6D 92.982 114 8 0 741 854 366701106 366701219 3.040000e-37 167
61 TraesCS7B01G145600 chr4B 92.925 212 14 1 4158 4368 222699815 222700026 1.720000e-79 307
62 TraesCS7B01G145600 chr4B 97.541 122 3 0 1924 2045 512740065 512739944 4.990000e-50 209
63 TraesCS7B01G145600 chr4B 94.872 117 5 1 741 857 15260624 15260509 1.090000e-41 182
64 TraesCS7B01G145600 chr4B 92.063 126 9 1 735 859 592702021 592702146 5.060000e-40 176
65 TraesCS7B01G145600 chr4B 92.562 121 9 0 737 857 449133158 449133038 1.820000e-39 174
66 TraesCS7B01G145600 chr4B 87.705 122 13 2 3884 4005 653915531 653915412 1.840000e-29 141
67 TraesCS7B01G145600 chr1B 90.950 221 18 2 4153 4372 474482135 474481916 3.720000e-76 296
68 TraesCS7B01G145600 chr1B 97.561 123 3 0 1928 2050 674876246 674876124 1.390000e-50 211
69 TraesCS7B01G145600 chr1B 93.277 119 8 0 741 859 572677810 572677692 5.060000e-40 176
70 TraesCS7B01G145600 chr3B 99.160 119 1 0 1927 2045 31105661 31105779 1.070000e-51 215
71 TraesCS7B01G145600 chr3B 99.160 119 1 0 1926 2044 655032864 655032746 1.070000e-51 215
72 TraesCS7B01G145600 chr3B 95.968 124 4 1 737 859 489685016 489684893 3.000000e-47 200
73 TraesCS7B01G145600 chr6A 96.850 127 4 0 1923 2049 296983683 296983557 3.850000e-51 213
74 TraesCS7B01G145600 chr6A 95.420 131 6 0 1924 2054 464513315 464513185 4.990000e-50 209
75 TraesCS7B01G145600 chr6A 94.783 115 4 2 741 854 395249164 395249277 1.410000e-40 178
76 TraesCS7B01G145600 chr2B 96.154 130 4 1 1922 2051 765761809 765761681 1.390000e-50 211
77 TraesCS7B01G145600 chr2B 96.491 114 4 0 741 854 670297933 670298046 6.490000e-44 189
78 TraesCS7B01G145600 chr2B 95.041 121 4 2 738 857 721718582 721718463 6.490000e-44 189
79 TraesCS7B01G145600 chr2B 92.800 125 9 0 741 865 209075811 209075687 1.090000e-41 182
80 TraesCS7B01G145600 chr2D 96.063 127 4 1 1927 2053 630017925 630017800 6.450000e-49 206
81 TraesCS7B01G145600 chr2D 92.683 123 9 0 737 859 95519538 95519660 1.410000e-40 178
82 TraesCS7B01G145600 chr1A 95.349 129 6 0 1920 2048 41745081 41745209 6.450000e-49 206
83 TraesCS7B01G145600 chr1A 98.291 117 2 0 1928 2044 569891816 569891932 6.450000e-49 206
84 TraesCS7B01G145600 chrUn 95.276 127 6 0 1921 2047 287061596 287061722 8.340000e-48 202
85 TraesCS7B01G145600 chrUn 97.436 117 3 0 1928 2044 80550721 80550605 3.000000e-47 200
86 TraesCS7B01G145600 chrUn 96.581 117 4 0 1928 2044 9343715 9343599 1.400000e-45 195
87 TraesCS7B01G145600 chrUn 95.041 121 6 0 1927 2047 82049478 82049598 1.810000e-44 191
88 TraesCS7B01G145600 chrUn 95.726 117 5 0 1928 2044 9472230 9472346 6.490000e-44 189
89 TraesCS7B01G145600 chrUn 95.726 117 4 1 1928 2044 86629382 86629267 2.340000e-43 187
90 TraesCS7B01G145600 chrUn 94.118 119 7 0 1928 2046 51033256 51033374 1.090000e-41 182
91 TraesCS7B01G145600 chrUn 93.220 118 8 0 1928 2045 86908318 86908435 1.820000e-39 174
92 TraesCS7B01G145600 chrUn 93.162 117 8 0 1928 2044 87420288 87420404 6.540000e-39 172
93 TraesCS7B01G145600 chrUn 91.870 123 9 1 737 858 87827388 87827510 2.350000e-38 171
94 TraesCS7B01G145600 chrUn 91.870 123 9 1 737 858 309972433 309972555 2.350000e-38 171
95 TraesCS7B01G145600 chrUn 91.597 119 10 0 741 859 455532508 455532626 1.090000e-36 165
96 TraesCS7B01G145600 chrUn 90.833 120 11 0 741 860 70385116 70385235 1.420000e-35 161
97 TraesCS7B01G145600 chrUn 90.164 122 11 1 734 854 76605059 76605180 1.830000e-34 158
98 TraesCS7B01G145600 chrUn 88.710 124 14 0 738 861 12084258 12084381 8.520000e-33 152
99 TraesCS7B01G145600 chrUn 88.710 124 14 0 738 861 144863836 144863959 8.520000e-33 152
100 TraesCS7B01G145600 chrUn 88.710 124 14 0 738 861 144905309 144905432 8.520000e-33 152
101 TraesCS7B01G145600 chrUn 89.256 121 13 0 741 861 430774410 430774290 8.520000e-33 152
102 TraesCS7B01G145600 chr1D 97.458 118 3 0 1928 2045 415493077 415493194 8.340000e-48 202
103 TraesCS7B01G145600 chr1D 95.868 121 5 0 1927 2047 387551164 387551044 3.880000e-46 196
104 TraesCS7B01G145600 chr1D 92.500 120 9 0 739 858 69193897 69194016 6.540000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G145600 chr7B 188972377 188977291 4914 False 9077.00 9077 100.00000 1 4915 1 chr7B.!!$F2 4914
1 TraesCS7B01G145600 chr7D 212806885 212812256 5371 True 1396.20 3762 93.34520 103 4915 5 chr7D.!!$R4 4812
2 TraesCS7B01G145600 chr7D 4908233 4908772 539 True 726.00 726 90.95900 4376 4915 1 chr7D.!!$R1 539
3 TraesCS7B01G145600 chr7A 224088772 224092768 3996 True 1349.25 3160 90.90575 1 4156 4 chr7A.!!$R1 4155
4 TraesCS7B01G145600 chr5D 547596120 547596665 545 False 782.00 782 92.49100 4370 4915 1 chr5D.!!$F4 545
5 TraesCS7B01G145600 chr5B 94668492 94669029 537 True 756.00 756 92.00700 4376 4913 1 chr5B.!!$R1 537
6 TraesCS7B01G145600 chr6B 696507014 696507551 537 True 739.00 739 91.45000 4376 4913 1 chr6B.!!$R5 537
7 TraesCS7B01G145600 chr3D 154013260 154013805 545 False 737.00 737 91.02600 4370 4915 1 chr3D.!!$F1 545
8 TraesCS7B01G145600 chr3D 462267246 462267791 545 False 726.00 726 90.65900 4370 4915 1 chr3D.!!$F2 545
9 TraesCS7B01G145600 chr4D 45786349 45786894 545 False 721.00 721 90.51100 4370 4915 1 chr4D.!!$F1 545
10 TraesCS7B01G145600 chr3A 661488074 661488619 545 True 721.00 721 90.51100 4370 4915 1 chr3A.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
853 917 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
858 922 0.032813 TTCCGGACGGAGGGATTACT 60.033 55.0 13.64 0.00 46.06 2.24 F
1947 2064 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.00 44.66 1.40 F
3145 3268 0.044246 GCAACAAGCACGAAAAACGC 60.044 50.0 0.00 0.00 46.94 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2138 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.0 44.66 2.24 R
3488 3611 0.178891 TCTCCTGGAGGTCCTGCTTT 60.179 55.000 23.00 0.0 36.82 3.51 R
3829 3952 1.482182 CCATGATCTTCACCCGAGACA 59.518 52.381 0.00 0.0 0.00 3.41 R
4366 4522 0.102481 CGGTTAGGACATCTCGGTGG 59.898 60.000 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 5.335191 GGAATTCGCTCACTTTTTCTGTGAT 60.335 40.000 0.00 0.00 42.57 3.06
65 66 5.447573 GCTCACTTTTTCTGTGATGACTTC 58.552 41.667 0.00 0.00 42.57 3.01
82 83 2.412089 ACTTCGCTCGAATTTTTCTCCG 59.588 45.455 5.11 0.00 33.28 4.63
87 88 2.474032 GCTCGAATTTTTCTCCGAACCG 60.474 50.000 0.00 0.00 0.00 4.44
95 96 6.753107 ATTTTTCTCCGAACCGTTTCATAT 57.247 33.333 0.00 0.00 0.00 1.78
101 102 2.129607 CGAACCGTTTCATATACCGGG 58.870 52.381 6.32 0.00 44.57 5.73
249 256 0.831711 TGCTCTTTGCCTTTTCCCCC 60.832 55.000 0.00 0.00 42.00 5.40
260 267 3.864983 TTTCCCCCTGCTCCTCGGT 62.865 63.158 0.00 0.00 0.00 4.69
264 271 1.686110 CCCCTGCTCCTCGGTACTT 60.686 63.158 0.00 0.00 0.00 2.24
279 286 0.389426 TACTTTGCTTCCTCGCCGAC 60.389 55.000 0.00 0.00 0.00 4.79
292 305 3.353836 CCGACCCACAACCGCAAG 61.354 66.667 0.00 0.00 0.00 4.01
319 332 6.637657 CAAGTAGTCCGTATAAAAACCTCCT 58.362 40.000 0.00 0.00 0.00 3.69
322 335 3.131755 AGTCCGTATAAAAACCTCCTCCG 59.868 47.826 0.00 0.00 0.00 4.63
323 336 3.099141 TCCGTATAAAAACCTCCTCCGT 58.901 45.455 0.00 0.00 0.00 4.69
383 424 1.065709 ACACTGTCAAACGTCCCAACT 60.066 47.619 0.00 0.00 0.00 3.16
408 449 4.127171 CAACTGCTAAACTATGCCGGTAT 58.873 43.478 10.75 10.75 0.00 2.73
546 594 1.755008 CCACCGTCTCTCTCCCTCC 60.755 68.421 0.00 0.00 0.00 4.30
547 595 1.755008 CACCGTCTCTCTCCCTCCC 60.755 68.421 0.00 0.00 0.00 4.30
548 596 1.931705 ACCGTCTCTCTCCCTCCCT 60.932 63.158 0.00 0.00 0.00 4.20
549 597 1.152839 CCGTCTCTCTCCCTCCCTC 60.153 68.421 0.00 0.00 0.00 4.30
744 808 4.630069 ACCGCACAGTGATACAAAATACTC 59.370 41.667 4.15 0.00 0.00 2.59
746 810 4.034048 CGCACAGTGATACAAAATACTCCC 59.966 45.833 4.15 0.00 0.00 4.30
747 811 5.186198 GCACAGTGATACAAAATACTCCCT 58.814 41.667 4.15 0.00 0.00 4.20
748 812 5.294552 GCACAGTGATACAAAATACTCCCTC 59.705 44.000 4.15 0.00 0.00 4.30
749 813 5.817816 CACAGTGATACAAAATACTCCCTCC 59.182 44.000 0.00 0.00 0.00 4.30
750 814 5.050490 CAGTGATACAAAATACTCCCTCCG 58.950 45.833 0.00 0.00 0.00 4.63
751 815 4.715297 AGTGATACAAAATACTCCCTCCGT 59.285 41.667 0.00 0.00 0.00 4.69
752 816 5.189145 AGTGATACAAAATACTCCCTCCGTT 59.811 40.000 0.00 0.00 0.00 4.44
753 817 5.522824 GTGATACAAAATACTCCCTCCGTTC 59.477 44.000 0.00 0.00 0.00 3.95
754 818 5.424252 TGATACAAAATACTCCCTCCGTTCT 59.576 40.000 0.00 0.00 0.00 3.01
755 819 3.939066 ACAAAATACTCCCTCCGTTCTG 58.061 45.455 0.00 0.00 0.00 3.02
756 820 3.581332 ACAAAATACTCCCTCCGTTCTGA 59.419 43.478 0.00 0.00 0.00 3.27
757 821 4.041198 ACAAAATACTCCCTCCGTTCTGAA 59.959 41.667 0.00 0.00 0.00 3.02
758 822 5.186198 CAAAATACTCCCTCCGTTCTGAAT 58.814 41.667 0.00 0.00 0.00 2.57
759 823 5.437191 AAATACTCCCTCCGTTCTGAATT 57.563 39.130 0.00 0.00 0.00 2.17
760 824 6.555463 AAATACTCCCTCCGTTCTGAATTA 57.445 37.500 0.00 0.00 0.00 1.40
761 825 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
762 826 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
763 827 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
764 828 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
765 829 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
766 830 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
767 831 3.612860 CCTCCGTTCTGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
768 832 4.482386 CTCCGTTCTGAATTACTTGTCGA 58.518 43.478 0.00 0.00 0.00 4.20
769 833 4.873817 TCCGTTCTGAATTACTTGTCGAA 58.126 39.130 0.00 0.00 0.00 3.71
770 834 4.921515 TCCGTTCTGAATTACTTGTCGAAG 59.078 41.667 0.00 0.00 35.07 3.79
771 835 4.921515 CCGTTCTGAATTACTTGTCGAAGA 59.078 41.667 0.00 0.00 32.98 2.87
772 836 5.404366 CCGTTCTGAATTACTTGTCGAAGAA 59.596 40.000 0.00 0.00 39.69 2.52
773 837 6.073980 CCGTTCTGAATTACTTGTCGAAGAAA 60.074 38.462 0.00 0.00 39.69 2.52
774 838 7.360101 CCGTTCTGAATTACTTGTCGAAGAAAT 60.360 37.037 0.00 0.00 39.69 2.17
775 839 7.684489 CGTTCTGAATTACTTGTCGAAGAAATC 59.316 37.037 0.00 0.00 39.69 2.17
829 893 9.814899 CATATGTCTAGATACATCCATTTCTCC 57.185 37.037 0.00 0.00 40.52 3.71
830 894 6.332735 TGTCTAGATACATCCATTTCTCCG 57.667 41.667 0.00 0.00 0.00 4.63
831 895 6.068670 TGTCTAGATACATCCATTTCTCCGA 58.931 40.000 0.00 0.00 0.00 4.55
832 896 6.016192 TGTCTAGATACATCCATTTCTCCGAC 60.016 42.308 0.00 0.00 0.00 4.79
833 897 6.016192 GTCTAGATACATCCATTTCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
834 898 5.614324 AGATACATCCATTTCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
835 899 5.605534 AGATACATCCATTTCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
836 900 3.703001 ACATCCATTTCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
837 901 4.819105 ACATCCATTTCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
838 902 5.359194 ACATCCATTTCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
839 903 5.745227 ACATCCATTTCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
840 904 6.180472 ACATCCATTTCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
841 905 6.316390 ACATCCATTTCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
842 906 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
843 907 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
844 908 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
845 909 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
846 910 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
847 911 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
848 912 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
849 913 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
850 914 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
851 915 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
852 916 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
853 917 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
854 918 1.046204 GTATTTCCGGACGGAGGGAT 58.954 55.000 13.64 11.41 46.06 3.85
855 919 1.415289 GTATTTCCGGACGGAGGGATT 59.585 52.381 13.64 0.00 46.06 3.01
856 920 1.797320 ATTTCCGGACGGAGGGATTA 58.203 50.000 13.64 0.00 46.06 1.75
857 921 0.826062 TTTCCGGACGGAGGGATTAC 59.174 55.000 13.64 0.00 46.06 1.89
858 922 0.032813 TTCCGGACGGAGGGATTACT 60.033 55.000 13.64 0.00 46.06 2.24
1040 1105 4.753662 CCCGTCGTCCTCCTCCCA 62.754 72.222 0.00 0.00 0.00 4.37
1175 1240 4.735132 GTGTGCCGCCTACGCTGA 62.735 66.667 0.00 0.00 38.22 4.26
1317 1382 0.248990 TCTTGCCTGTTTTGCGCTTG 60.249 50.000 9.73 0.00 0.00 4.01
1428 1493 0.109153 TGCACACTTCTGCATCTGGT 59.891 50.000 0.00 0.00 42.36 4.00
1437 1502 0.603707 CTGCATCTGGTTGTCGTGGT 60.604 55.000 0.00 0.00 0.00 4.16
1541 1607 4.870991 ACTTTCTTTAGCGATAGTCCTTGC 59.129 41.667 0.00 0.00 39.35 4.01
1542 1608 3.454371 TCTTTAGCGATAGTCCTTGCC 57.546 47.619 0.00 0.00 39.35 4.52
1543 1609 3.031736 TCTTTAGCGATAGTCCTTGCCT 58.968 45.455 0.00 0.00 39.35 4.75
1544 1610 3.068307 TCTTTAGCGATAGTCCTTGCCTC 59.932 47.826 0.00 0.00 39.35 4.70
1545 1611 1.329256 TAGCGATAGTCCTTGCCTCC 58.671 55.000 0.00 0.00 39.35 4.30
1546 1612 0.397816 AGCGATAGTCCTTGCCTCCT 60.398 55.000 0.00 0.00 39.35 3.69
1547 1613 0.466124 GCGATAGTCCTTGCCTCCTT 59.534 55.000 0.00 0.00 39.35 3.36
1548 1614 1.808133 GCGATAGTCCTTGCCTCCTTG 60.808 57.143 0.00 0.00 39.35 3.61
1569 1635 2.599659 GCCGAAATGGAAGCTGAAAAG 58.400 47.619 0.00 0.00 42.00 2.27
1606 1672 3.441572 GTGCTATGCTGATTGGAGTTTGT 59.558 43.478 0.00 0.00 0.00 2.83
1644 1761 6.614694 TCAGTTACCATGGCTAAGTTAGAA 57.385 37.500 13.04 1.27 0.00 2.10
1674 1791 7.232127 AGCAAGGCTATTTTCTTGTATGCATAT 59.768 33.333 10.16 0.00 41.56 1.78
1697 1814 5.221880 TGAAAGGCAATGATCTTTTTCACG 58.778 37.500 0.00 0.00 33.85 4.35
1731 1848 2.753029 GCCCTGGCTGTCTTCTGT 59.247 61.111 0.00 0.00 38.26 3.41
1782 1899 3.626217 GCCTACTTATACAGGTTGTTGGC 59.374 47.826 0.00 0.00 40.76 4.52
1827 1944 6.688385 CAGTGGAATGCATTTACTAAATCGTG 59.312 38.462 22.21 10.94 0.00 4.35
1933 2050 7.625828 ACAAACTATTTTAGCATGTACTCCC 57.374 36.000 0.00 0.00 0.00 4.30
1934 2051 7.402862 ACAAACTATTTTAGCATGTACTCCCT 58.597 34.615 0.00 0.00 0.00 4.20
1935 2052 7.553044 ACAAACTATTTTAGCATGTACTCCCTC 59.447 37.037 0.00 0.00 0.00 4.30
1936 2053 6.176014 ACTATTTTAGCATGTACTCCCTCC 57.824 41.667 0.00 0.00 0.00 4.30
1937 2054 3.536956 TTTTAGCATGTACTCCCTCCG 57.463 47.619 0.00 0.00 0.00 4.63
1938 2055 2.154567 TTAGCATGTACTCCCTCCGT 57.845 50.000 0.00 0.00 0.00 4.69
1939 2056 1.688772 TAGCATGTACTCCCTCCGTC 58.311 55.000 0.00 0.00 0.00 4.79
1940 2057 1.043673 AGCATGTACTCCCTCCGTCC 61.044 60.000 0.00 0.00 0.00 4.79
1941 2058 1.734137 CATGTACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
1942 2059 1.455217 ATGTACTCCCTCCGTCCGG 60.455 63.158 0.00 0.00 0.00 5.14
1943 2060 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
1944 2061 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1945 2062 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1946 2063 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1947 2064 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1948 2065 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1949 2066 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1950 2067 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1951 2068 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1952 2069 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1953 2070 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1954 2071 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1955 2072 1.997606 CCGTCCGGAAATACTTGTCAC 59.002 52.381 5.23 0.00 37.50 3.67
1956 2073 2.353406 CCGTCCGGAAATACTTGTCACT 60.353 50.000 5.23 0.00 37.50 3.41
1957 2074 2.666508 CGTCCGGAAATACTTGTCACTG 59.333 50.000 5.23 0.00 0.00 3.66
1958 2075 3.613193 CGTCCGGAAATACTTGTCACTGA 60.613 47.826 5.23 0.00 0.00 3.41
1959 2076 4.312443 GTCCGGAAATACTTGTCACTGAA 58.688 43.478 5.23 0.00 0.00 3.02
1960 2077 4.753107 GTCCGGAAATACTTGTCACTGAAA 59.247 41.667 5.23 0.00 0.00 2.69
1961 2078 5.411669 GTCCGGAAATACTTGTCACTGAAAT 59.588 40.000 5.23 0.00 0.00 2.17
1962 2079 5.411361 TCCGGAAATACTTGTCACTGAAATG 59.589 40.000 0.00 0.00 0.00 2.32
1963 2080 5.391950 CCGGAAATACTTGTCACTGAAATGG 60.392 44.000 0.00 0.00 0.00 3.16
1964 2081 5.411361 CGGAAATACTTGTCACTGAAATGGA 59.589 40.000 0.00 0.00 0.00 3.41
1965 2082 6.094048 CGGAAATACTTGTCACTGAAATGGAT 59.906 38.462 0.00 0.00 0.00 3.41
1966 2083 7.253422 GGAAATACTTGTCACTGAAATGGATG 58.747 38.462 0.00 0.00 0.00 3.51
1967 2084 7.094205 GGAAATACTTGTCACTGAAATGGATGT 60.094 37.037 0.00 0.00 0.00 3.06
1968 2085 8.862325 AAATACTTGTCACTGAAATGGATGTA 57.138 30.769 0.00 0.00 0.00 2.29
1969 2086 9.466497 AAATACTTGTCACTGAAATGGATGTAT 57.534 29.630 0.00 0.00 0.00 2.29
1970 2087 6.992063 ACTTGTCACTGAAATGGATGTATC 57.008 37.500 0.00 0.00 0.00 2.24
1971 2088 6.715280 ACTTGTCACTGAAATGGATGTATCT 58.285 36.000 0.00 0.00 0.00 1.98
1972 2089 7.851228 ACTTGTCACTGAAATGGATGTATCTA 58.149 34.615 0.00 0.00 0.00 1.98
1973 2090 7.984050 ACTTGTCACTGAAATGGATGTATCTAG 59.016 37.037 0.00 0.00 0.00 2.43
1974 2091 7.660030 TGTCACTGAAATGGATGTATCTAGA 57.340 36.000 0.00 0.00 0.00 2.43
1975 2092 8.255111 TGTCACTGAAATGGATGTATCTAGAT 57.745 34.615 10.73 10.73 0.00 1.98
1976 2093 8.146412 TGTCACTGAAATGGATGTATCTAGATG 58.854 37.037 15.79 0.00 0.00 2.90
1977 2094 8.147058 GTCACTGAAATGGATGTATCTAGATGT 58.853 37.037 15.79 1.25 0.00 3.06
1978 2095 9.367160 TCACTGAAATGGATGTATCTAGATGTA 57.633 33.333 15.79 4.44 0.00 2.29
2009 2126 8.717717 AGTTCTAGATACATCCATTTTCATCCA 58.282 33.333 0.00 0.00 0.00 3.41
2010 2127 9.512588 GTTCTAGATACATCCATTTTCATCCAT 57.487 33.333 0.00 0.00 0.00 3.41
2015 2132 9.204337 AGATACATCCATTTTCATCCATTTTGA 57.796 29.630 0.00 0.00 0.00 2.69
2016 2133 9.991906 GATACATCCATTTTCATCCATTTTGAT 57.008 29.630 0.00 0.00 0.00 2.57
2017 2134 9.772973 ATACATCCATTTTCATCCATTTTGATG 57.227 29.630 0.00 0.00 42.84 3.07
2029 2146 8.469200 TCATCCATTTTGATGACAAGTAATTCC 58.531 33.333 0.00 0.00 44.65 3.01
2030 2147 6.851609 TCCATTTTGATGACAAGTAATTCCG 58.148 36.000 0.00 0.00 37.32 4.30
2031 2148 6.035843 CCATTTTGATGACAAGTAATTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
2032 2149 6.127758 CCATTTTGATGACAAGTAATTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
2033 2150 5.873179 TTTGATGACAAGTAATTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2034 2151 3.517602 TGATGACAAGTAATTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2035 2152 2.373540 TGACAAGTAATTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2036 2153 1.894466 TGACAAGTAATTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2037 2154 2.094390 TGACAAGTAATTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2038 2155 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2039 2156 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2040 2157 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
2041 2158 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2081 2198 4.033358 GTCACTATGTCTGCATTCTTTCCG 59.967 45.833 0.00 0.00 36.58 4.30
2086 2203 4.685169 TGTCTGCATTCTTTCCGAAATC 57.315 40.909 0.00 0.00 34.79 2.17
2116 2233 7.172342 TGCCCTTTGTTGGTATATATATCACC 58.828 38.462 5.14 0.00 0.00 4.02
2119 2236 9.449719 CCCTTTGTTGGTATATATATCACCTTC 57.550 37.037 5.14 9.50 33.28 3.46
2222 2339 3.436700 AACAGCCACAAAGCTAACAAC 57.563 42.857 0.00 0.00 42.61 3.32
2330 2450 7.663827 TCATTTTGTTTGCTGAATCATCTTCT 58.336 30.769 0.00 0.00 0.00 2.85
2331 2451 8.795513 TCATTTTGTTTGCTGAATCATCTTCTA 58.204 29.630 0.00 0.00 0.00 2.10
2332 2452 9.582431 CATTTTGTTTGCTGAATCATCTTCTAT 57.418 29.630 0.00 0.00 0.00 1.98
2390 2510 0.746659 ACACTTGTTGCTTCCTTGGC 59.253 50.000 0.00 0.00 0.00 4.52
2546 2666 2.673368 GGATCTCGACAATCACAACACC 59.327 50.000 5.63 0.00 0.00 4.16
2555 2675 4.780815 ACAATCACAACACCTTCTCTTCA 58.219 39.130 0.00 0.00 0.00 3.02
2558 2678 4.687901 TCACAACACCTTCTCTTCATCA 57.312 40.909 0.00 0.00 0.00 3.07
2596 2716 8.577296 CCATTTCTCTTCATCAAATGAGCATAT 58.423 33.333 5.40 0.00 40.94 1.78
2651 2771 1.786937 TCCTTCATCCTGCTCTCTCC 58.213 55.000 0.00 0.00 0.00 3.71
2660 2780 1.594194 CTGCTCTCTCCGCTGACAGT 61.594 60.000 3.99 0.00 0.00 3.55
2682 2802 3.965539 CTCAAGTCGGCCAGCAGGG 62.966 68.421 2.24 0.00 40.85 4.45
2708 2828 1.673168 ATTCAGCAGAATCGAAGGCC 58.327 50.000 0.00 0.00 40.39 5.19
2752 2872 3.067985 TGCGACAATCAGCAGGGA 58.932 55.556 0.00 0.00 38.59 4.20
2794 2914 1.294659 CCGAAGAACCTCAGCAGTGC 61.295 60.000 7.13 7.13 0.00 4.40
2822 2942 2.203182 TCGAACCACCACCCCTCT 59.797 61.111 0.00 0.00 0.00 3.69
2849 2969 0.589223 CGCGTACAAGGCAAAAAGGA 59.411 50.000 0.00 0.00 0.00 3.36
2918 3038 1.293498 GGACATGTCACCGAGCACT 59.707 57.895 26.47 0.00 0.00 4.40
2996 3116 1.067283 TCTCTGAAGAAGGAGCTTGCG 60.067 52.381 0.00 0.00 0.00 4.85
3131 3251 4.718961 AGAAGGCTCTAAAGAAAGCAACA 58.281 39.130 0.00 0.00 40.36 3.33
3145 3268 0.044246 GCAACAAGCACGAAAAACGC 60.044 50.000 0.00 0.00 46.94 4.84
3212 3335 1.353103 CGATTCATTGCCCGTCAGC 59.647 57.895 0.00 0.00 0.00 4.26
3359 3482 3.409201 GCTCCTGCAGCCATATCAA 57.591 52.632 8.66 0.00 43.17 2.57
3413 3536 4.935352 ACTGTATCATCTGGAAGCTCTC 57.065 45.455 0.00 0.00 0.00 3.20
3488 3611 3.636231 CCCAGGTGCTTCGACCCA 61.636 66.667 0.00 0.00 36.56 4.51
3596 3719 4.742201 TGCGAGGACTTCAGCCGC 62.742 66.667 0.00 0.00 45.28 6.53
3719 3842 2.045536 CTGCTCCACCTTCTGGCC 60.046 66.667 0.00 0.00 40.39 5.36
3725 3848 0.178891 TCCACCTTCTGGCCTTCTCT 60.179 55.000 3.32 0.00 40.39 3.10
3755 3878 2.360350 CTGATGGTGCTGCGGGTT 60.360 61.111 0.00 0.00 0.00 4.11
3813 3936 0.179097 GATCCAGGTCGAGAGGCAAC 60.179 60.000 0.00 0.00 37.54 4.17
3829 3952 3.165160 AACGGTCGCAGCAGAACCT 62.165 57.895 6.95 0.00 0.00 3.50
4211 4367 7.163001 AGCCCAACTAAAATCTGAAATTCTC 57.837 36.000 0.00 0.00 0.00 2.87
4212 4368 6.721208 AGCCCAACTAAAATCTGAAATTCTCA 59.279 34.615 0.00 0.00 0.00 3.27
4225 4381 4.717778 TGAAATTCTCATGGCCCATTCATT 59.282 37.500 0.00 0.00 0.00 2.57
4226 4382 4.950205 AATTCTCATGGCCCATTCATTC 57.050 40.909 0.00 0.00 0.00 2.67
4240 4396 2.118313 TCATTCATGGCTGTGAGTGG 57.882 50.000 13.02 1.29 36.73 4.00
4248 4404 0.601311 GGCTGTGAGTGGTGTGAGTC 60.601 60.000 0.00 0.00 0.00 3.36
4281 4437 0.395312 GTCCCACCTCGGAAGTTGAA 59.605 55.000 0.00 0.00 36.56 2.69
4284 4440 1.453155 CCACCTCGGAAGTTGAATGG 58.547 55.000 0.00 0.00 36.56 3.16
4305 4461 3.628032 GGGAGTTGCACCTCTTTATAAGC 59.372 47.826 11.37 0.00 0.00 3.09
4321 4477 6.985653 TTATAAGCTGAGCTCTTCTACCAT 57.014 37.500 16.19 8.42 38.25 3.55
4339 4495 6.988580 TCTACCATTTGTATGAGCATGAGAAG 59.011 38.462 0.00 0.00 33.37 2.85
4347 4503 2.812658 TGAGCATGAGAAGAGGAGACA 58.187 47.619 0.00 0.00 0.00 3.41
4356 4512 1.132643 GAAGAGGAGACATACACGCGT 59.867 52.381 5.58 5.58 0.00 6.01
4366 4522 2.005960 ATACACGCGTGCTCCTCCTC 62.006 60.000 37.35 0.00 0.00 3.71
4397 5280 0.036388 CCTAACCGCTTTGAGGAGCA 60.036 55.000 0.00 0.00 42.83 4.26
4438 5321 2.236146 AGGACCGCTAATGTTGTCATCA 59.764 45.455 0.00 0.00 32.56 3.07
4516 5399 0.532115 GGGTCACATGCCATTGTTCC 59.468 55.000 0.00 0.00 0.00 3.62
4531 5414 3.849840 TGTTCCAGGTGTTGGTACGGC 62.850 57.143 0.00 0.00 46.96 5.68
4563 5446 1.843368 TACTTCGGGGAAGATCGTGT 58.157 50.000 12.00 0.00 41.71 4.49
4571 5454 1.610624 GGGAAGATCGTGTGCCTGAAA 60.611 52.381 0.00 0.00 0.00 2.69
4575 5458 2.571212 AGATCGTGTGCCTGAAAAACA 58.429 42.857 0.00 0.00 0.00 2.83
4589 5472 5.211174 TGAAAAACATTCATCATGTGCCA 57.789 34.783 0.00 0.00 46.23 4.92
4600 5483 5.007682 TCATCATGTGCCATCCATCAATAG 58.992 41.667 0.00 0.00 0.00 1.73
4640 5523 4.160065 TCCCGTTTATGTCGAGATGGTTTA 59.840 41.667 5.12 0.00 0.00 2.01
4738 5621 2.227194 CTTGTTCCGCCTACCTTTGTT 58.773 47.619 0.00 0.00 0.00 2.83
4750 5633 6.017109 CGCCTACCTTTGTTAGATATTTGCAT 60.017 38.462 0.00 0.00 0.00 3.96
4858 5741 4.274950 GCGGCTAGCCAATATGAGTTTAAA 59.725 41.667 32.47 0.00 40.81 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.332632 TCCCTCCCTGCTGGAAATTG 59.667 55.000 11.88 0.00 44.57 2.32
48 49 3.184379 CGAGCGAAGTCATCACAGAAAAA 59.816 43.478 0.00 0.00 0.00 1.94
59 60 3.432252 GGAGAAAAATTCGAGCGAAGTCA 59.568 43.478 11.17 0.00 37.56 3.41
65 66 2.474032 GGTTCGGAGAAAAATTCGAGCG 60.474 50.000 0.00 0.00 45.90 5.03
82 83 3.387397 CTCCCGGTATATGAAACGGTTC 58.613 50.000 6.16 6.16 44.57 3.62
87 88 2.922740 TGGCTCCCGGTATATGAAAC 57.077 50.000 0.00 0.00 0.00 2.78
95 96 1.754380 CGGAATCATGGCTCCCGGTA 61.754 60.000 0.00 0.00 36.81 4.02
101 102 1.169034 GGCTTCCGGAATCATGGCTC 61.169 60.000 19.21 7.60 0.00 4.70
174 175 4.454847 GCGATGGAACTGATTGATGATGAT 59.545 41.667 0.00 0.00 0.00 2.45
249 256 0.247736 AGCAAAGTACCGAGGAGCAG 59.752 55.000 0.00 0.00 0.00 4.24
260 267 0.389426 GTCGGCGAGGAAGCAAAGTA 60.389 55.000 11.20 0.00 39.27 2.24
264 271 4.388499 GGGTCGGCGAGGAAGCAA 62.388 66.667 11.20 0.00 39.27 3.91
279 286 2.682256 CTTGCACTTGCGGTTGTGGG 62.682 60.000 0.00 0.00 45.83 4.61
292 305 5.640783 AGGTTTTTATACGGACTACTTGCAC 59.359 40.000 0.00 0.00 0.00 4.57
319 332 0.671472 CTGCATGCTTGACTGACGGA 60.671 55.000 20.33 0.00 0.00 4.69
383 424 2.679639 CGGCATAGTTTAGCAGTTGGGA 60.680 50.000 0.00 0.00 0.00 4.37
408 449 1.451504 CCAGTCCCTGTGCTGTTGA 59.548 57.895 0.00 0.00 0.00 3.18
546 594 2.104963 GGGTAGCTTTACAGATGGGAGG 59.895 54.545 0.00 0.00 0.00 4.30
547 595 3.041946 AGGGTAGCTTTACAGATGGGAG 58.958 50.000 0.00 0.00 0.00 4.30
548 596 3.039011 GAGGGTAGCTTTACAGATGGGA 58.961 50.000 0.00 0.00 0.00 4.37
549 597 3.041946 AGAGGGTAGCTTTACAGATGGG 58.958 50.000 0.00 0.00 0.00 4.00
744 808 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
746 810 4.482386 TCGACAAGTAATTCAGAACGGAG 58.518 43.478 0.00 0.00 0.00 4.63
747 811 4.508461 TCGACAAGTAATTCAGAACGGA 57.492 40.909 0.00 0.00 0.00 4.69
748 812 4.921515 TCTTCGACAAGTAATTCAGAACGG 59.078 41.667 0.00 0.00 0.00 4.44
749 813 6.448053 TTCTTCGACAAGTAATTCAGAACG 57.552 37.500 0.00 0.00 0.00 3.95
750 814 8.867248 GATTTCTTCGACAAGTAATTCAGAAC 57.133 34.615 0.00 0.00 31.62 3.01
803 867 9.814899 GGAGAAATGGATGTATCTAGACATATG 57.185 37.037 0.00 0.00 40.18 1.78
804 868 8.690884 CGGAGAAATGGATGTATCTAGACATAT 58.309 37.037 0.00 0.00 40.18 1.78
805 869 7.888546 TCGGAGAAATGGATGTATCTAGACATA 59.111 37.037 0.00 0.00 40.18 2.29
806 870 6.721668 TCGGAGAAATGGATGTATCTAGACAT 59.278 38.462 0.00 0.00 42.82 3.06
807 871 6.016192 GTCGGAGAAATGGATGTATCTAGACA 60.016 42.308 0.00 0.00 39.69 3.41
808 872 6.016192 TGTCGGAGAAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 39.69 2.59
809 873 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
810 874 6.332735 TGTCGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 39.69 2.43
811 875 6.323996 ACTTGTCGGAGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 39.69 1.98
812 876 5.129485 ACTTGTCGGAGAAATGGATGTATCT 59.871 40.000 0.00 0.00 39.69 1.98
813 877 5.360591 ACTTGTCGGAGAAATGGATGTATC 58.639 41.667 0.00 0.00 39.69 2.24
814 878 5.359194 ACTTGTCGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 39.69 2.29
815 879 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
816 880 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
817 881 6.238484 GGAAATACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
818 882 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
819 883 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
820 884 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
821 885 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
822 886 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
823 887 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
824 888 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
825 889 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
826 890 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
827 891 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
828 892 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
829 893 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
830 894 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
831 895 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
832 896 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
833 897 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
834 898 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
835 899 1.046204 ATCCCTCCGTCCGGAAATAC 58.954 55.000 5.23 0.00 44.66 1.89
836 900 1.797320 AATCCCTCCGTCCGGAAATA 58.203 50.000 5.23 0.00 44.66 1.40
837 901 1.415289 GTAATCCCTCCGTCCGGAAAT 59.585 52.381 5.23 1.49 44.66 2.17
838 902 0.826062 GTAATCCCTCCGTCCGGAAA 59.174 55.000 5.23 0.00 44.66 3.13
839 903 0.032813 AGTAATCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
840 904 0.032813 AAGTAATCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
841 905 0.104304 CAAGTAATCCCTCCGTCCGG 59.896 60.000 0.00 0.00 0.00 5.14
842 906 1.108776 TCAAGTAATCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
843 907 1.829222 TGTCAAGTAATCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
844 908 3.821421 ATGTCAAGTAATCCCTCCGTC 57.179 47.619 0.00 0.00 0.00 4.79
845 909 4.028131 TGTATGTCAAGTAATCCCTCCGT 58.972 43.478 0.00 0.00 0.00 4.69
846 910 4.369182 GTGTATGTCAAGTAATCCCTCCG 58.631 47.826 0.00 0.00 0.00 4.63
847 911 4.369182 CGTGTATGTCAAGTAATCCCTCC 58.631 47.826 0.00 0.00 0.00 4.30
848 912 4.098960 TCCGTGTATGTCAAGTAATCCCTC 59.901 45.833 0.00 0.00 0.00 4.30
849 913 4.028131 TCCGTGTATGTCAAGTAATCCCT 58.972 43.478 0.00 0.00 0.00 4.20
850 914 4.117685 GTCCGTGTATGTCAAGTAATCCC 58.882 47.826 0.00 0.00 0.00 3.85
851 915 4.751060 TGTCCGTGTATGTCAAGTAATCC 58.249 43.478 0.00 0.00 0.00 3.01
852 916 6.715344 TTTGTCCGTGTATGTCAAGTAATC 57.285 37.500 0.00 0.00 0.00 1.75
853 917 6.483974 TGTTTTGTCCGTGTATGTCAAGTAAT 59.516 34.615 0.00 0.00 0.00 1.89
854 918 5.816258 TGTTTTGTCCGTGTATGTCAAGTAA 59.184 36.000 0.00 0.00 0.00 2.24
855 919 5.358090 TGTTTTGTCCGTGTATGTCAAGTA 58.642 37.500 0.00 0.00 0.00 2.24
856 920 4.193090 TGTTTTGTCCGTGTATGTCAAGT 58.807 39.130 0.00 0.00 0.00 3.16
857 921 4.804608 TGTTTTGTCCGTGTATGTCAAG 57.195 40.909 0.00 0.00 0.00 3.02
858 922 5.758784 TGTATGTTTTGTCCGTGTATGTCAA 59.241 36.000 0.00 0.00 0.00 3.18
1062 1127 1.153449 CTGGATTTCCTGGCGCGTA 60.153 57.895 8.43 0.00 36.82 4.42
1317 1382 5.382618 TCCTTAGACCGAGAAACAGTAAC 57.617 43.478 0.00 0.00 0.00 2.50
1376 1441 2.480555 GCGGACAGTGGCAAATCG 59.519 61.111 0.00 0.00 0.00 3.34
1428 1493 0.533308 GCAACCTACCACCACGACAA 60.533 55.000 0.00 0.00 0.00 3.18
1437 1502 0.698238 AATCCTGCAGCAACCTACCA 59.302 50.000 8.66 0.00 0.00 3.25
1528 1594 0.466124 AAGGAGGCAAGGACTATCGC 59.534 55.000 0.00 0.00 0.00 4.58
1541 1607 0.323360 TTCCATTTCGGCCAAGGAGG 60.323 55.000 2.24 0.00 41.84 4.30
1542 1608 1.098050 CTTCCATTTCGGCCAAGGAG 58.902 55.000 2.24 0.00 33.14 3.69
1543 1609 0.965363 GCTTCCATTTCGGCCAAGGA 60.965 55.000 2.24 0.00 33.14 3.36
1544 1610 0.967380 AGCTTCCATTTCGGCCAAGG 60.967 55.000 2.24 0.00 33.14 3.61
1545 1611 0.171903 CAGCTTCCATTTCGGCCAAG 59.828 55.000 2.24 0.00 33.14 3.61
1546 1612 0.251121 TCAGCTTCCATTTCGGCCAA 60.251 50.000 2.24 0.00 33.14 4.52
1547 1613 0.251121 TTCAGCTTCCATTTCGGCCA 60.251 50.000 2.24 0.00 33.14 5.36
1548 1614 0.887933 TTTCAGCTTCCATTTCGGCC 59.112 50.000 0.00 0.00 33.14 6.13
1569 1635 0.313043 AGCACATTTGAGCACACTGC 59.687 50.000 2.91 0.00 45.46 4.40
1584 1650 3.441572 ACAAACTCCAATCAGCATAGCAC 59.558 43.478 0.00 0.00 0.00 4.40
1606 1672 8.514594 CATGGTAACTGAAAAATGCTTAGAGAA 58.485 33.333 0.00 0.00 37.61 2.87
1644 1761 5.535753 ACAAGAAAATAGCCTTGCTTGTT 57.464 34.783 10.12 0.00 42.07 2.83
1674 1791 5.221224 ACGTGAAAAAGATCATTGCCTTTCA 60.221 36.000 0.00 0.00 32.01 2.69
1697 1814 4.039366 CCAGGGCTCTAGACACCTATTTAC 59.961 50.000 9.56 0.00 0.00 2.01
1731 1848 7.685481 TCTGGAATGTTGTAAATTAGACCAGA 58.315 34.615 0.00 0.00 44.75 3.86
1782 1899 3.444916 TGCGGAGAAGTTAGCTAATTCG 58.555 45.455 9.88 5.30 0.00 3.34
1931 2048 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1932 2049 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1933 2050 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1934 2051 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1935 2052 1.997606 GTGACAAGTATTTCCGGACGG 59.002 52.381 1.83 3.96 0.00 4.79
1936 2053 2.666508 CAGTGACAAGTATTTCCGGACG 59.333 50.000 1.83 0.00 0.00 4.79
1937 2054 3.921677 TCAGTGACAAGTATTTCCGGAC 58.078 45.455 1.83 0.00 0.00 4.79
1938 2055 4.610605 TTCAGTGACAAGTATTTCCGGA 57.389 40.909 0.00 0.00 0.00 5.14
1939 2056 5.391950 CCATTTCAGTGACAAGTATTTCCGG 60.392 44.000 0.00 0.00 0.00 5.14
1940 2057 5.411361 TCCATTTCAGTGACAAGTATTTCCG 59.589 40.000 0.00 0.00 0.00 4.30
1941 2058 6.817765 TCCATTTCAGTGACAAGTATTTCC 57.182 37.500 0.00 0.00 0.00 3.13
1942 2059 7.820648 ACATCCATTTCAGTGACAAGTATTTC 58.179 34.615 0.00 0.00 0.00 2.17
1943 2060 7.765695 ACATCCATTTCAGTGACAAGTATTT 57.234 32.000 0.00 0.00 0.00 1.40
1944 2061 9.113838 GATACATCCATTTCAGTGACAAGTATT 57.886 33.333 0.00 0.00 0.00 1.89
1945 2062 8.489489 AGATACATCCATTTCAGTGACAAGTAT 58.511 33.333 0.00 0.00 0.00 2.12
1946 2063 7.851228 AGATACATCCATTTCAGTGACAAGTA 58.149 34.615 0.00 0.00 0.00 2.24
1947 2064 6.715280 AGATACATCCATTTCAGTGACAAGT 58.285 36.000 0.00 0.00 0.00 3.16
1948 2065 8.200120 TCTAGATACATCCATTTCAGTGACAAG 58.800 37.037 0.00 0.00 0.00 3.16
1949 2066 8.078060 TCTAGATACATCCATTTCAGTGACAA 57.922 34.615 0.00 0.00 0.00 3.18
1950 2067 7.660030 TCTAGATACATCCATTTCAGTGACA 57.340 36.000 0.00 0.00 0.00 3.58
1951 2068 8.147058 ACATCTAGATACATCCATTTCAGTGAC 58.853 37.037 4.54 0.00 0.00 3.67
1952 2069 8.255111 ACATCTAGATACATCCATTTCAGTGA 57.745 34.615 4.54 0.00 0.00 3.41
1983 2100 8.717717 TGGATGAAAATGGATGTATCTAGAACT 58.282 33.333 0.00 0.00 0.00 3.01
1984 2101 8.908786 TGGATGAAAATGGATGTATCTAGAAC 57.091 34.615 0.00 0.00 0.00 3.01
1989 2106 9.204337 TCAAAATGGATGAAAATGGATGTATCT 57.796 29.630 0.00 0.00 0.00 1.98
1990 2107 9.991906 ATCAAAATGGATGAAAATGGATGTATC 57.008 29.630 0.00 0.00 0.00 2.24
1991 2108 9.772973 CATCAAAATGGATGAAAATGGATGTAT 57.227 29.630 0.00 0.00 46.00 2.29
2004 2121 7.433131 CGGAATTACTTGTCATCAAAATGGATG 59.567 37.037 0.00 0.00 44.78 3.51
2005 2122 7.416664 CCGGAATTACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
2006 2123 6.127758 CCGGAATTACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2007 2124 6.035843 CCGGAATTACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2008 2125 6.747280 GTCCGGAATTACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2009 2126 6.403200 CGTCCGGAATTACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2010 2127 5.106869 CGTCCGGAATTACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2011 2128 4.390603 CGTCCGGAATTACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2012 2129 3.930229 CGTCCGGAATTACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2013 2130 3.517602 CGTCCGGAATTACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2014 2131 2.864343 CCGTCCGGAATTACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2015 2132 2.498481 TCCGTCCGGAATTACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2016 2133 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2017 2134 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2018 2135 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2019 2136 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2020 2137 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
2021 2138 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
2022 2139 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
2023 2140 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
2024 2141 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
2025 2142 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
2026 2143 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2027 2144 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2028 2145 1.379576 AAGTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
2029 2146 1.664321 CCAAGTACTCCCTCCGTCCG 61.664 65.000 0.00 0.00 0.00 4.79
2030 2147 0.614134 ACCAAGTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
2031 2148 1.264295 AACCAAGTACTCCCTCCGTC 58.736 55.000 0.00 0.00 0.00 4.79
2032 2149 1.622312 GAAACCAAGTACTCCCTCCGT 59.378 52.381 0.00 0.00 0.00 4.69
2033 2150 1.621814 TGAAACCAAGTACTCCCTCCG 59.378 52.381 0.00 0.00 0.00 4.63
2034 2151 2.638363 ACTGAAACCAAGTACTCCCTCC 59.362 50.000 0.00 0.00 0.00 4.30
2035 2152 5.046520 ACATACTGAAACCAAGTACTCCCTC 60.047 44.000 0.00 0.00 33.11 4.30
2036 2153 4.844655 ACATACTGAAACCAAGTACTCCCT 59.155 41.667 0.00 0.00 33.11 4.20
2037 2154 5.161943 ACATACTGAAACCAAGTACTCCC 57.838 43.478 0.00 0.00 33.11 4.30
2038 2155 5.638234 GTGACATACTGAAACCAAGTACTCC 59.362 44.000 0.00 0.00 33.11 3.85
2039 2156 6.456501 AGTGACATACTGAAACCAAGTACTC 58.543 40.000 0.00 0.00 38.49 2.59
2040 2157 6.420913 AGTGACATACTGAAACCAAGTACT 57.579 37.500 0.00 0.00 38.49 2.73
2041 2158 7.817962 ACATAGTGACATACTGAAACCAAGTAC 59.182 37.037 0.00 0.00 40.65 2.73
2081 2198 3.747529 CCAACAAAGGGCAACATGATTTC 59.252 43.478 0.00 0.00 39.74 2.17
2086 2203 3.959535 ATACCAACAAAGGGCAACATG 57.040 42.857 0.00 0.00 39.74 3.21
2116 2233 2.394708 TGCGTGTCGAGAGAAAAGAAG 58.605 47.619 0.00 0.00 45.01 2.85
2119 2236 3.759418 TCTATGCGTGTCGAGAGAAAAG 58.241 45.455 0.00 0.00 45.01 2.27
2123 2240 3.695816 CATTTCTATGCGTGTCGAGAGA 58.304 45.455 0.00 0.00 38.16 3.10
2280 2400 0.460459 GTTCAGCTCTAACCCCTCGC 60.460 60.000 0.00 0.00 0.00 5.03
2362 2482 5.769662 AGGAAGCAACAAGTGTCAATATCAA 59.230 36.000 0.00 0.00 0.00 2.57
2364 2484 5.886960 AGGAAGCAACAAGTGTCAATATC 57.113 39.130 0.00 0.00 0.00 1.63
2390 2510 4.635765 TCACCATAAGCCTGAAAGATTTCG 59.364 41.667 1.18 0.00 40.01 3.46
2546 2666 3.181522 GCTCGCTGTTTGATGAAGAGAAG 60.182 47.826 0.00 0.00 30.41 2.85
2555 2675 2.119801 AATGGAGCTCGCTGTTTGAT 57.880 45.000 7.83 0.00 0.00 2.57
2558 2678 2.079925 GAGAAATGGAGCTCGCTGTTT 58.920 47.619 7.83 5.85 0.00 2.83
2596 2716 1.218047 CGAGGGATTCTGTTCCGCA 59.782 57.895 0.00 0.00 36.58 5.69
2651 2771 1.795286 GACTTGAGGAAACTGTCAGCG 59.205 52.381 0.00 0.00 44.43 5.18
2660 2780 1.302511 GCTGGCCGACTTGAGGAAA 60.303 57.895 0.00 0.00 0.00 3.13
2752 2872 0.333993 ATTGGCATCAGCTTCAGGGT 59.666 50.000 0.00 0.00 41.70 4.34
2810 2930 3.706373 CCGACAGAGGGGTGGTGG 61.706 72.222 0.00 0.00 0.00 4.61
2822 2942 2.126618 CTTGTACGCGAGCCGACA 60.127 61.111 15.93 5.76 41.02 4.35
2849 2969 0.593128 GCCATGAGAGCACGTTTGTT 59.407 50.000 0.00 0.00 0.00 2.83
2918 3038 2.076100 GACATGTTCTCACATTCGGCA 58.924 47.619 0.00 0.00 41.16 5.69
2970 3090 5.852282 AGCTCCTTCTTCAGAGATTCTAC 57.148 43.478 0.00 0.00 31.43 2.59
2996 3116 0.251077 CCCTATGCTCATTGGCCTCC 60.251 60.000 3.32 0.00 33.27 4.30
3099 3219 7.726033 TCTTTAGAGCCTTCTTCAGTTCTAT 57.274 36.000 0.00 0.00 34.79 1.98
3100 3220 7.540474 TTCTTTAGAGCCTTCTTCAGTTCTA 57.460 36.000 0.00 0.00 34.79 2.10
3137 3257 2.234187 GAGTGAGATTGCGCGTTTTTC 58.766 47.619 8.43 0.00 0.00 2.29
3145 3268 1.135257 ACCTCTTCGAGTGAGATTGCG 60.135 52.381 16.03 4.80 33.68 4.85
3164 3287 0.886490 CACCCACTGACCTTGCTGAC 60.886 60.000 0.00 0.00 0.00 3.51
3170 3293 1.344953 TGCTGACACCCACTGACCTT 61.345 55.000 0.00 0.00 0.00 3.50
3173 3296 1.302033 CCTGCTGACACCCACTGAC 60.302 63.158 0.00 0.00 0.00 3.51
3212 3335 2.357154 CCCTTCCACCATTACTTCCTGG 60.357 54.545 0.00 0.00 38.55 4.45
3359 3482 1.007271 CTTGTCGGCGAGTGTCAGT 60.007 57.895 11.20 0.00 0.00 3.41
3413 3536 2.355197 TGGTACATCGCTTGGTTCATG 58.645 47.619 0.00 0.00 0.00 3.07
3480 3603 1.072505 GGTCCTGCTTTGGGTCGAA 59.927 57.895 0.00 0.00 0.00 3.71
3488 3611 0.178891 TCTCCTGGAGGTCCTGCTTT 60.179 55.000 23.00 0.00 36.82 3.51
3719 3842 2.103042 CGGCGGGCTGAAAGAGAAG 61.103 63.158 0.00 0.00 34.07 2.85
3755 3878 2.203938 AAGGCCCGGTTCTCCTCA 60.204 61.111 0.00 0.00 0.00 3.86
3803 3926 4.717629 TGCGACCGTTGCCTCTCG 62.718 66.667 8.33 0.00 0.00 4.04
3813 3936 3.114616 CAGGTTCTGCTGCGACCG 61.115 66.667 12.10 5.88 38.48 4.79
3829 3952 1.482182 CCATGATCTTCACCCGAGACA 59.518 52.381 0.00 0.00 0.00 3.41
4191 4347 7.490402 GGCCATGAGAATTTCAGATTTTAGTTG 59.510 37.037 0.00 0.00 39.68 3.16
4211 4367 1.270625 GCCATGAATGAATGGGCCATG 60.271 52.381 22.01 6.11 46.24 3.66
4212 4368 1.053424 GCCATGAATGAATGGGCCAT 58.947 50.000 14.78 14.78 46.24 4.40
4225 4381 0.250424 CACACCACTCACAGCCATGA 60.250 55.000 0.00 0.00 0.00 3.07
4226 4382 0.250424 TCACACCACTCACAGCCATG 60.250 55.000 0.00 0.00 0.00 3.66
4240 4396 7.046862 GACTAAATTTTAGTCCGACTCACAC 57.953 40.000 27.84 8.91 38.33 3.82
4271 4427 1.200020 GCAACTCCCATTCAACTTCCG 59.800 52.381 0.00 0.00 0.00 4.30
4281 4437 5.440610 CTTATAAAGAGGTGCAACTCCCAT 58.559 41.667 28.05 19.45 38.26 4.00
4284 4440 4.333926 CAGCTTATAAAGAGGTGCAACTCC 59.666 45.833 28.05 10.11 38.26 3.85
4305 4461 6.577103 TCATACAAATGGTAGAAGAGCTCAG 58.423 40.000 17.77 0.00 34.92 3.35
4321 4477 5.423290 TCTCCTCTTCTCATGCTCATACAAA 59.577 40.000 0.00 0.00 0.00 2.83
4339 4495 1.140407 GCACGCGTGTATGTCTCCTC 61.140 60.000 36.80 15.01 0.00 3.71
4347 4503 2.005960 GAGGAGGAGCACGCGTGTAT 62.006 60.000 36.80 26.93 0.00 2.29
4356 4512 2.230189 ATCTCGGTGGAGGAGGAGCA 62.230 60.000 0.00 0.00 40.85 4.26
4366 4522 0.102481 CGGTTAGGACATCTCGGTGG 59.898 60.000 0.00 0.00 0.00 4.61
4368 4524 0.683504 AGCGGTTAGGACATCTCGGT 60.684 55.000 0.00 0.00 0.00 4.69
4397 5280 1.513158 CCGCTCTTCTCATGTCCGT 59.487 57.895 0.00 0.00 0.00 4.69
4438 5321 7.038445 CCCAGAATCCTTCATATCAGTATCACT 60.038 40.741 0.00 0.00 0.00 3.41
4516 5399 2.515996 ATCGGCCGTACCAACACCTG 62.516 60.000 27.15 0.00 39.03 4.00
4558 5441 2.685388 TGAATGTTTTTCAGGCACACGA 59.315 40.909 0.00 0.00 0.00 4.35
4589 5472 7.445121 TGCTAACGAGATTTCTATTGATGGAT 58.555 34.615 0.00 0.00 0.00 3.41
4600 5483 2.603560 CGGGAACTGCTAACGAGATTTC 59.396 50.000 0.00 0.00 0.00 2.17
4640 5523 9.143155 ACTTTATTGGACTCAAAAACCAACTAT 57.857 29.630 0.00 0.00 44.64 2.12
4750 5633 9.828852 CGTGGCAAACATTACTAATAACTTTAA 57.171 29.630 0.00 0.00 0.00 1.52
4858 5741 5.178797 CCTTGACAGTAGTGAATTTCGGAT 58.821 41.667 4.09 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.