Multiple sequence alignment - TraesCS7B01G145300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G145300 chr7B 100.000 2749 0 0 1 2749 188411541 188414289 0.000000e+00 5077.0
1 TraesCS7B01G145300 chr7B 93.264 386 17 4 1182 1564 188412540 188412919 6.650000e-156 560.0
2 TraesCS7B01G145300 chr7B 93.264 386 17 4 1000 1379 188412722 188413104 6.650000e-156 560.0
3 TraesCS7B01G145300 chr7B 93.035 201 11 2 1364 1564 188412540 188412737 9.630000e-75 291.0
4 TraesCS7B01G145300 chr7B 93.035 201 11 2 1000 1197 188412904 188413104 9.630000e-75 291.0
5 TraesCS7B01G145300 chr5B 98.745 2311 28 1 439 2749 277800248 277802557 0.000000e+00 4106.0
6 TraesCS7B01G145300 chr5B 92.689 383 19 4 1000 1376 277800991 277801370 6.700000e-151 544.0
7 TraesCS7B01G145300 chr5B 92.228 386 21 6 1182 1564 277800809 277801188 3.120000e-149 538.0
8 TraesCS7B01G145300 chr5B 98.394 249 4 0 196 444 277799804 277800052 3.250000e-119 438.0
9 TraesCS7B01G145300 chr5B 92.040 201 13 2 1364 1564 277800809 277801006 2.080000e-71 279.0
10 TraesCS7B01G145300 chr5B 92.424 198 12 2 1000 1194 277801173 277801370 2.080000e-71 279.0
11 TraesCS7B01G145300 chr5A 98.154 1571 23 3 1182 2749 566589288 566587721 0.000000e+00 2736.0
12 TraesCS7B01G145300 chr5A 98.401 1188 16 1 195 1379 566590093 566588906 0.000000e+00 2085.0
13 TraesCS7B01G145300 chr5A 92.537 201 12 2 1000 1197 566589106 566588906 4.480000e-73 285.0
14 TraesCS7B01G145300 chr5A 92.040 201 13 2 1364 1564 566589288 566589091 2.080000e-71 279.0
15 TraesCS7B01G145300 chr7A 92.143 1120 60 11 1390 2506 724186801 724185707 0.000000e+00 1555.0
16 TraesCS7B01G145300 chr7A 87.694 1032 79 15 190 1196 724187640 724186632 0.000000e+00 1158.0
17 TraesCS7B01G145300 chr7A 90.341 176 6 7 1208 1378 724186801 724186632 1.280000e-53 220.0
18 TraesCS7B01G145300 chr7A 91.791 134 10 1 2560 2693 724185707 724185575 4.670000e-43 185.0
19 TraesCS7B01G145300 chr3B 90.132 1216 87 10 1538 2749 595619260 595620446 0.000000e+00 1550.0
20 TraesCS7B01G145300 chr3B 89.707 923 60 7 1538 2459 595622126 595623014 0.000000e+00 1146.0
21 TraesCS7B01G145300 chr3B 85.962 691 77 6 217 898 595621357 595622036 0.000000e+00 721.0
22 TraesCS7B01G145300 chr3B 83.795 722 86 16 196 898 595618461 595619170 0.000000e+00 656.0
23 TraesCS7B01G145300 chr1B 93.836 146 9 0 750 895 560015918 560016063 1.280000e-53 220.0
24 TraesCS7B01G145300 chr1B 85.714 168 22 2 1762 1929 553832669 553832504 2.810000e-40 176.0
25 TraesCS7B01G145300 chr1A 91.608 143 12 0 750 892 511446660 511446802 6.000000e-47 198.0
26 TraesCS7B01G145300 chr7D 79.801 302 35 11 1630 1919 629781878 629781591 2.160000e-46 196.0
27 TraesCS7B01G145300 chr7D 95.833 48 2 0 1809 1856 629868610 629868657 8.160000e-11 78.7
28 TraesCS7B01G145300 chr3A 78.947 228 29 13 2291 2501 732475426 732475651 1.330000e-28 137.0
29 TraesCS7B01G145300 chr3D 76.863 255 37 16 2291 2528 603598316 603598067 1.030000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G145300 chr7B 188411541 188414289 2748 False 1355.800000 5077 94.51960 1 2749 5 chr7B.!!$F1 2748
1 TraesCS7B01G145300 chr5B 277799804 277802557 2753 False 1030.666667 4106 94.42000 196 2749 6 chr5B.!!$F1 2553
2 TraesCS7B01G145300 chr5A 566587721 566590093 2372 True 1346.250000 2736 95.28300 195 2749 4 chr5A.!!$R1 2554
3 TraesCS7B01G145300 chr7A 724185575 724187640 2065 True 779.500000 1555 90.49225 190 2693 4 chr7A.!!$R1 2503
4 TraesCS7B01G145300 chr3B 595618461 595623014 4553 False 1018.250000 1550 87.39900 196 2749 4 chr3B.!!$F1 2553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.031857 CGCACAAGAAAATGCACCCA 59.968 50.0 0.0 0.0 42.17 4.51 F
607 826 0.036010 ATCACGTCTTCCAAGCCCAG 60.036 55.0 0.0 0.0 0.00 4.45 F
1410 2012 0.033228 CTGGCGGAGAAGGAGCATAG 59.967 60.0 0.0 0.0 0.00 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1391 1993 0.033228 CTATGCTCCTTCTCCGCCAG 59.967 60.000 0.00 0.0 0.0 4.85 R
1421 2023 1.555741 GCATGCTCGGCGATCTTCTC 61.556 60.000 11.27 0.0 0.0 2.87 R
2677 3284 7.800380 CCATAAGTTCTTGAATATTCGCATGTC 59.200 37.037 10.80 0.7 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.777865 TTGAAATAGATAACTGTGAGGTTGAG 57.222 34.615 0.00 0.00 0.00 3.02
26 27 8.134202 TGAAATAGATAACTGTGAGGTTGAGA 57.866 34.615 0.00 0.00 0.00 3.27
27 28 8.762645 TGAAATAGATAACTGTGAGGTTGAGAT 58.237 33.333 0.00 0.00 0.00 2.75
28 29 9.606631 GAAATAGATAACTGTGAGGTTGAGATT 57.393 33.333 0.00 0.00 0.00 2.40
29 30 8.954950 AATAGATAACTGTGAGGTTGAGATTG 57.045 34.615 0.00 0.00 0.00 2.67
30 31 6.611613 AGATAACTGTGAGGTTGAGATTGA 57.388 37.500 0.00 0.00 0.00 2.57
31 32 7.192852 AGATAACTGTGAGGTTGAGATTGAT 57.807 36.000 0.00 0.00 0.00 2.57
32 33 7.628234 AGATAACTGTGAGGTTGAGATTGATT 58.372 34.615 0.00 0.00 0.00 2.57
33 34 5.954296 AACTGTGAGGTTGAGATTGATTG 57.046 39.130 0.00 0.00 0.00 2.67
34 35 5.233083 ACTGTGAGGTTGAGATTGATTGA 57.767 39.130 0.00 0.00 0.00 2.57
35 36 5.243981 ACTGTGAGGTTGAGATTGATTGAG 58.756 41.667 0.00 0.00 0.00 3.02
36 37 5.012458 ACTGTGAGGTTGAGATTGATTGAGA 59.988 40.000 0.00 0.00 0.00 3.27
37 38 5.240891 TGTGAGGTTGAGATTGATTGAGAC 58.759 41.667 0.00 0.00 0.00 3.36
38 39 5.012458 TGTGAGGTTGAGATTGATTGAGACT 59.988 40.000 0.00 0.00 0.00 3.24
39 40 5.936956 GTGAGGTTGAGATTGATTGAGACTT 59.063 40.000 0.00 0.00 0.00 3.01
40 41 6.429385 GTGAGGTTGAGATTGATTGAGACTTT 59.571 38.462 0.00 0.00 0.00 2.66
41 42 7.000472 TGAGGTTGAGATTGATTGAGACTTTT 59.000 34.615 0.00 0.00 0.00 2.27
42 43 7.040892 TGAGGTTGAGATTGATTGAGACTTTTG 60.041 37.037 0.00 0.00 0.00 2.44
43 44 6.774656 AGGTTGAGATTGATTGAGACTTTTGT 59.225 34.615 0.00 0.00 0.00 2.83
44 45 7.286316 AGGTTGAGATTGATTGAGACTTTTGTT 59.714 33.333 0.00 0.00 0.00 2.83
45 46 8.567948 GGTTGAGATTGATTGAGACTTTTGTTA 58.432 33.333 0.00 0.00 0.00 2.41
46 47 9.950680 GTTGAGATTGATTGAGACTTTTGTTAA 57.049 29.630 0.00 0.00 0.00 2.01
59 60 9.565213 GAGACTTTTGTTAAATCTCAATGATGG 57.435 33.333 0.00 0.00 36.60 3.51
60 61 9.082313 AGACTTTTGTTAAATCTCAATGATGGT 57.918 29.630 0.00 0.00 35.21 3.55
66 67 8.662781 TGTTAAATCTCAATGATGGTAGTAGC 57.337 34.615 0.00 0.00 35.21 3.58
67 68 7.715249 TGTTAAATCTCAATGATGGTAGTAGCC 59.285 37.037 0.00 0.00 35.21 3.93
68 69 4.527509 ATCTCAATGATGGTAGTAGCCG 57.472 45.455 0.00 0.00 33.43 5.52
69 70 3.296854 TCTCAATGATGGTAGTAGCCGT 58.703 45.455 0.00 0.00 0.00 5.68
70 71 3.318275 TCTCAATGATGGTAGTAGCCGTC 59.682 47.826 0.00 1.17 43.17 4.79
71 72 3.296854 TCAATGATGGTAGTAGCCGTCT 58.703 45.455 5.99 0.00 43.25 4.18
72 73 4.466827 TCAATGATGGTAGTAGCCGTCTA 58.533 43.478 5.99 0.00 43.25 2.59
73 74 4.891168 TCAATGATGGTAGTAGCCGTCTAA 59.109 41.667 5.99 0.00 43.25 2.10
74 75 5.538813 TCAATGATGGTAGTAGCCGTCTAAT 59.461 40.000 5.99 0.00 43.25 1.73
75 76 6.041637 TCAATGATGGTAGTAGCCGTCTAATT 59.958 38.462 5.99 0.00 43.25 1.40
76 77 5.864418 TGATGGTAGTAGCCGTCTAATTT 57.136 39.130 5.99 0.00 43.25 1.82
77 78 6.964807 TGATGGTAGTAGCCGTCTAATTTA 57.035 37.500 5.99 0.00 43.25 1.40
78 79 7.350744 TGATGGTAGTAGCCGTCTAATTTAA 57.649 36.000 5.99 0.00 43.25 1.52
79 80 7.959175 TGATGGTAGTAGCCGTCTAATTTAAT 58.041 34.615 5.99 0.00 43.25 1.40
80 81 8.086522 TGATGGTAGTAGCCGTCTAATTTAATC 58.913 37.037 5.99 0.00 43.25 1.75
81 82 6.752168 TGGTAGTAGCCGTCTAATTTAATCC 58.248 40.000 0.00 0.00 0.00 3.01
82 83 6.552350 TGGTAGTAGCCGTCTAATTTAATCCT 59.448 38.462 0.00 0.00 0.00 3.24
83 84 7.725397 TGGTAGTAGCCGTCTAATTTAATCCTA 59.275 37.037 0.00 0.00 0.00 2.94
84 85 8.026026 GGTAGTAGCCGTCTAATTTAATCCTAC 58.974 40.741 0.00 0.00 0.00 3.18
85 86 7.592885 AGTAGCCGTCTAATTTAATCCTACA 57.407 36.000 0.00 0.00 0.00 2.74
86 87 7.432059 AGTAGCCGTCTAATTTAATCCTACAC 58.568 38.462 0.00 0.00 0.00 2.90
87 88 5.287226 AGCCGTCTAATTTAATCCTACACG 58.713 41.667 0.00 0.00 0.00 4.49
88 89 4.084693 GCCGTCTAATTTAATCCTACACGC 60.085 45.833 0.00 0.00 0.00 5.34
89 90 5.045215 CCGTCTAATTTAATCCTACACGCA 58.955 41.667 0.00 0.00 0.00 5.24
90 91 5.051240 CCGTCTAATTTAATCCTACACGCAC 60.051 44.000 0.00 0.00 0.00 5.34
91 92 5.517411 CGTCTAATTTAATCCTACACGCACA 59.483 40.000 0.00 0.00 0.00 4.57
92 93 6.035220 CGTCTAATTTAATCCTACACGCACAA 59.965 38.462 0.00 0.00 0.00 3.33
93 94 7.399523 GTCTAATTTAATCCTACACGCACAAG 58.600 38.462 0.00 0.00 0.00 3.16
94 95 7.277098 GTCTAATTTAATCCTACACGCACAAGA 59.723 37.037 0.00 0.00 0.00 3.02
95 96 6.811253 AATTTAATCCTACACGCACAAGAA 57.189 33.333 0.00 0.00 0.00 2.52
96 97 6.811253 ATTTAATCCTACACGCACAAGAAA 57.189 33.333 0.00 0.00 0.00 2.52
97 98 6.621316 TTTAATCCTACACGCACAAGAAAA 57.379 33.333 0.00 0.00 0.00 2.29
98 99 6.811253 TTAATCCTACACGCACAAGAAAAT 57.189 33.333 0.00 0.00 0.00 1.82
99 100 4.685169 ATCCTACACGCACAAGAAAATG 57.315 40.909 0.00 0.00 0.00 2.32
100 101 2.225491 TCCTACACGCACAAGAAAATGC 59.775 45.455 0.00 0.00 38.52 3.56
101 102 2.031245 CCTACACGCACAAGAAAATGCA 60.031 45.455 0.00 0.00 42.17 3.96
102 103 1.838913 ACACGCACAAGAAAATGCAC 58.161 45.000 0.00 0.00 42.17 4.57
103 104 1.130955 CACGCACAAGAAAATGCACC 58.869 50.000 0.00 0.00 42.17 5.01
104 105 0.031994 ACGCACAAGAAAATGCACCC 59.968 50.000 0.00 0.00 42.17 4.61
105 106 0.031857 CGCACAAGAAAATGCACCCA 59.968 50.000 0.00 0.00 42.17 4.51
106 107 1.337074 CGCACAAGAAAATGCACCCAT 60.337 47.619 0.00 0.00 42.17 4.00
107 108 2.340337 GCACAAGAAAATGCACCCATC 58.660 47.619 0.00 0.00 41.65 3.51
108 109 2.932187 GCACAAGAAAATGCACCCATCC 60.932 50.000 0.00 0.00 41.65 3.51
109 110 2.299582 CACAAGAAAATGCACCCATCCA 59.700 45.455 0.00 0.00 0.00 3.41
110 111 2.971330 ACAAGAAAATGCACCCATCCAA 59.029 40.909 0.00 0.00 0.00 3.53
111 112 3.244181 ACAAGAAAATGCACCCATCCAAC 60.244 43.478 0.00 0.00 0.00 3.77
112 113 2.607499 AGAAAATGCACCCATCCAACA 58.393 42.857 0.00 0.00 0.00 3.33
113 114 2.299867 AGAAAATGCACCCATCCAACAC 59.700 45.455 0.00 0.00 0.00 3.32
114 115 1.714541 AAATGCACCCATCCAACACA 58.285 45.000 0.00 0.00 0.00 3.72
115 116 1.941377 AATGCACCCATCCAACACAT 58.059 45.000 0.00 0.00 0.00 3.21
116 117 1.477553 ATGCACCCATCCAACACATC 58.522 50.000 0.00 0.00 0.00 3.06
117 118 0.112025 TGCACCCATCCAACACATCA 59.888 50.000 0.00 0.00 0.00 3.07
118 119 0.527565 GCACCCATCCAACACATCAC 59.472 55.000 0.00 0.00 0.00 3.06
119 120 1.908344 CACCCATCCAACACATCACA 58.092 50.000 0.00 0.00 0.00 3.58
120 121 1.541147 CACCCATCCAACACATCACAC 59.459 52.381 0.00 0.00 0.00 3.82
121 122 1.176527 CCCATCCAACACATCACACC 58.823 55.000 0.00 0.00 0.00 4.16
122 123 1.272092 CCCATCCAACACATCACACCT 60.272 52.381 0.00 0.00 0.00 4.00
123 124 2.517959 CCATCCAACACATCACACCTT 58.482 47.619 0.00 0.00 0.00 3.50
124 125 2.892852 CCATCCAACACATCACACCTTT 59.107 45.455 0.00 0.00 0.00 3.11
125 126 3.321682 CCATCCAACACATCACACCTTTT 59.678 43.478 0.00 0.00 0.00 2.27
126 127 4.202243 CCATCCAACACATCACACCTTTTT 60.202 41.667 0.00 0.00 0.00 1.94
181 182 9.909644 CGGTTTTGCTAGAATATATAGTACTGT 57.090 33.333 5.39 0.39 0.00 3.55
607 826 0.036010 ATCACGTCTTCCAAGCCCAG 60.036 55.000 0.00 0.00 0.00 4.45
1062 1662 5.633182 GCATAGGAAGATGTTCGAGAAGATC 59.367 44.000 13.16 13.16 40.27 2.75
1063 1663 6.737070 GCATAGGAAGATGTTCGAGAAGATCA 60.737 42.308 20.27 4.67 41.81 2.92
1068 1668 2.921634 TGTTCGAGAAGATCACCGAG 57.078 50.000 0.00 0.00 32.41 4.63
1069 1669 1.135373 TGTTCGAGAAGATCACCGAGC 60.135 52.381 0.00 1.12 33.85 5.03
1070 1670 0.098905 TTCGAGAAGATCACCGAGCG 59.901 55.000 0.00 0.00 32.41 5.03
1071 1671 1.025113 TCGAGAAGATCACCGAGCGT 61.025 55.000 0.00 0.00 0.00 5.07
1072 1672 0.590230 CGAGAAGATCACCGAGCGTC 60.590 60.000 0.00 0.00 0.00 5.19
1073 1673 0.248702 GAGAAGATCACCGAGCGTCC 60.249 60.000 0.00 0.00 27.54 4.79
1074 1674 0.681564 AGAAGATCACCGAGCGTCCT 60.682 55.000 0.00 0.00 27.54 3.85
1075 1675 0.526524 GAAGATCACCGAGCGTCCTG 60.527 60.000 0.00 0.00 0.00 3.86
1076 1676 0.965866 AAGATCACCGAGCGTCCTGA 60.966 55.000 0.00 0.00 0.00 3.86
1077 1677 1.064946 GATCACCGAGCGTCCTGAG 59.935 63.158 0.00 0.00 0.00 3.35
1078 1678 2.343163 GATCACCGAGCGTCCTGAGG 62.343 65.000 0.00 0.00 0.00 3.86
1079 1679 2.838748 ATCACCGAGCGTCCTGAGGA 62.839 60.000 0.00 0.00 0.00 3.71
1080 1680 2.752238 ACCGAGCGTCCTGAGGAG 60.752 66.667 0.00 0.00 29.39 3.69
1081 1681 2.438614 CCGAGCGTCCTGAGGAGA 60.439 66.667 0.00 0.00 29.39 3.71
1082 1682 1.826054 CCGAGCGTCCTGAGGAGAT 60.826 63.158 0.00 0.00 29.39 2.75
1083 1683 1.358402 CGAGCGTCCTGAGGAGATG 59.642 63.158 0.00 0.00 29.39 2.90
1084 1684 1.098129 CGAGCGTCCTGAGGAGATGA 61.098 60.000 0.00 0.00 29.39 2.92
1085 1685 1.107114 GAGCGTCCTGAGGAGATGAA 58.893 55.000 0.00 0.00 29.39 2.57
1086 1686 1.478510 GAGCGTCCTGAGGAGATGAAA 59.521 52.381 0.00 0.00 29.39 2.69
1087 1687 1.480137 AGCGTCCTGAGGAGATGAAAG 59.520 52.381 0.00 0.00 29.39 2.62
1088 1688 1.205893 GCGTCCTGAGGAGATGAAAGT 59.794 52.381 0.00 0.00 29.39 2.66
1089 1689 2.427453 GCGTCCTGAGGAGATGAAAGTA 59.573 50.000 0.00 0.00 29.39 2.24
1090 1690 3.735514 GCGTCCTGAGGAGATGAAAGTAC 60.736 52.174 0.00 0.00 29.39 2.73
1091 1691 3.444034 CGTCCTGAGGAGATGAAAGTACA 59.556 47.826 0.00 0.00 29.39 2.90
1092 1692 4.675671 CGTCCTGAGGAGATGAAAGTACAC 60.676 50.000 0.00 0.00 29.39 2.90
1093 1693 4.464597 GTCCTGAGGAGATGAAAGTACACT 59.535 45.833 0.00 0.00 29.39 3.55
1094 1694 5.046950 GTCCTGAGGAGATGAAAGTACACTT 60.047 44.000 0.00 0.00 32.29 3.16
1095 1695 6.153000 GTCCTGAGGAGATGAAAGTACACTTA 59.847 42.308 0.00 0.00 31.23 2.24
1096 1696 6.897966 TCCTGAGGAGATGAAAGTACACTTAT 59.102 38.462 0.00 0.00 34.61 1.73
1097 1697 7.400339 TCCTGAGGAGATGAAAGTACACTTATT 59.600 37.037 0.00 0.00 34.61 1.40
1098 1698 7.708752 CCTGAGGAGATGAAAGTACACTTATTC 59.291 40.741 0.00 0.00 34.61 1.75
1099 1699 7.258441 TGAGGAGATGAAAGTACACTTATTCG 58.742 38.462 0.00 0.00 34.61 3.34
1100 1700 7.122204 TGAGGAGATGAAAGTACACTTATTCGA 59.878 37.037 0.00 0.00 34.61 3.71
1101 1701 8.012957 AGGAGATGAAAGTACACTTATTCGAT 57.987 34.615 0.00 0.00 34.61 3.59
1102 1702 8.478877 AGGAGATGAAAGTACACTTATTCGATT 58.521 33.333 0.00 0.00 34.61 3.34
1103 1703 8.756864 GGAGATGAAAGTACACTTATTCGATTC 58.243 37.037 0.00 0.00 34.61 2.52
1104 1704 8.649973 AGATGAAAGTACACTTATTCGATTCC 57.350 34.615 0.00 0.00 34.61 3.01
1105 1705 8.258007 AGATGAAAGTACACTTATTCGATTCCA 58.742 33.333 0.00 0.00 34.61 3.53
1106 1706 8.964476 ATGAAAGTACACTTATTCGATTCCAT 57.036 30.769 0.00 0.00 34.61 3.41
1107 1707 8.196802 TGAAAGTACACTTATTCGATTCCATG 57.803 34.615 0.00 0.00 34.61 3.66
1108 1708 7.822334 TGAAAGTACACTTATTCGATTCCATGT 59.178 33.333 0.00 0.00 34.61 3.21
1109 1709 8.561738 AAAGTACACTTATTCGATTCCATGTT 57.438 30.769 0.00 0.00 34.61 2.71
1110 1710 8.561738 AAGTACACTTATTCGATTCCATGTTT 57.438 30.769 0.00 0.00 33.79 2.83
1111 1711 7.974675 AGTACACTTATTCGATTCCATGTTTG 58.025 34.615 0.00 0.00 0.00 2.93
1112 1712 7.822334 AGTACACTTATTCGATTCCATGTTTGA 59.178 33.333 0.00 0.00 0.00 2.69
1113 1713 7.630242 ACACTTATTCGATTCCATGTTTGAT 57.370 32.000 0.00 0.00 0.00 2.57
1114 1714 7.697691 ACACTTATTCGATTCCATGTTTGATC 58.302 34.615 0.00 0.00 0.00 2.92
1115 1715 7.134815 CACTTATTCGATTCCATGTTTGATCC 58.865 38.462 0.00 0.00 0.00 3.36
1116 1716 6.828273 ACTTATTCGATTCCATGTTTGATCCA 59.172 34.615 0.00 0.00 0.00 3.41
1117 1717 5.762825 ATTCGATTCCATGTTTGATCCAG 57.237 39.130 0.00 0.00 0.00 3.86
1118 1718 4.220693 TCGATTCCATGTTTGATCCAGT 57.779 40.909 0.00 0.00 0.00 4.00
1119 1719 3.940852 TCGATTCCATGTTTGATCCAGTG 59.059 43.478 0.00 0.00 0.00 3.66
1120 1720 3.691118 CGATTCCATGTTTGATCCAGTGT 59.309 43.478 0.00 0.00 0.00 3.55
1121 1721 4.156556 CGATTCCATGTTTGATCCAGTGTT 59.843 41.667 0.00 0.00 0.00 3.32
1122 1722 4.852134 TTCCATGTTTGATCCAGTGTTG 57.148 40.909 0.00 0.00 0.00 3.33
1123 1723 3.156293 TCCATGTTTGATCCAGTGTTGG 58.844 45.455 0.00 0.00 46.49 3.77
1124 1724 2.892852 CCATGTTTGATCCAGTGTTGGT 59.107 45.455 0.00 0.00 45.26 3.67
1125 1725 3.057315 CCATGTTTGATCCAGTGTTGGTC 60.057 47.826 0.00 0.00 45.26 4.02
1126 1726 2.217750 TGTTTGATCCAGTGTTGGTCG 58.782 47.619 0.00 0.00 45.26 4.79
1127 1727 2.218603 GTTTGATCCAGTGTTGGTCGT 58.781 47.619 0.00 0.00 45.26 4.34
1128 1728 1.877637 TTGATCCAGTGTTGGTCGTG 58.122 50.000 0.00 0.00 45.26 4.35
1129 1729 1.044611 TGATCCAGTGTTGGTCGTGA 58.955 50.000 0.00 0.00 45.26 4.35
1130 1730 1.000843 TGATCCAGTGTTGGTCGTGAG 59.999 52.381 0.00 0.00 45.26 3.51
1131 1731 1.000955 GATCCAGTGTTGGTCGTGAGT 59.999 52.381 0.00 0.00 45.26 3.41
1132 1732 0.104120 TCCAGTGTTGGTCGTGAGTG 59.896 55.000 0.00 0.00 45.26 3.51
1133 1733 1.498865 CCAGTGTTGGTCGTGAGTGC 61.499 60.000 0.00 0.00 39.79 4.40
1134 1734 0.530650 CAGTGTTGGTCGTGAGTGCT 60.531 55.000 0.00 0.00 0.00 4.40
1135 1735 1.037493 AGTGTTGGTCGTGAGTGCTA 58.963 50.000 0.00 0.00 0.00 3.49
1136 1736 1.137513 GTGTTGGTCGTGAGTGCTAC 58.862 55.000 0.00 0.00 0.00 3.58
1137 1737 0.747852 TGTTGGTCGTGAGTGCTACA 59.252 50.000 0.00 0.00 0.00 2.74
1138 1738 1.269569 TGTTGGTCGTGAGTGCTACAG 60.270 52.381 0.00 0.00 0.00 2.74
1139 1739 1.037493 TTGGTCGTGAGTGCTACAGT 58.963 50.000 0.00 0.00 0.00 3.55
1140 1740 1.037493 TGGTCGTGAGTGCTACAGTT 58.963 50.000 0.00 0.00 0.00 3.16
1141 1741 1.411246 TGGTCGTGAGTGCTACAGTTT 59.589 47.619 0.00 0.00 0.00 2.66
1142 1742 2.624364 TGGTCGTGAGTGCTACAGTTTA 59.376 45.455 0.00 0.00 0.00 2.01
1143 1743 3.257375 TGGTCGTGAGTGCTACAGTTTAT 59.743 43.478 0.00 0.00 0.00 1.40
1144 1744 3.858238 GGTCGTGAGTGCTACAGTTTATC 59.142 47.826 0.00 0.00 0.00 1.75
1145 1745 4.380655 GGTCGTGAGTGCTACAGTTTATCT 60.381 45.833 0.00 0.00 0.00 1.98
1147 1747 4.457949 TCGTGAGTGCTACAGTTTATCTGA 59.542 41.667 1.79 0.00 46.27 3.27
1148 1748 5.048294 TCGTGAGTGCTACAGTTTATCTGAA 60.048 40.000 1.79 0.00 46.27 3.02
1149 1749 5.633601 CGTGAGTGCTACAGTTTATCTGAAA 59.366 40.000 1.79 0.00 46.27 2.69
1150 1750 6.145534 CGTGAGTGCTACAGTTTATCTGAAAA 59.854 38.462 1.79 0.00 46.27 2.29
1151 1751 7.291567 GTGAGTGCTACAGTTTATCTGAAAAC 58.708 38.462 1.79 7.11 46.27 2.43
1152 1752 6.989759 TGAGTGCTACAGTTTATCTGAAAACA 59.010 34.615 13.79 0.00 46.27 2.83
1153 1753 7.497579 TGAGTGCTACAGTTTATCTGAAAACAA 59.502 33.333 13.79 3.61 46.27 2.83
1154 1754 8.396272 AGTGCTACAGTTTATCTGAAAACAAT 57.604 30.769 13.79 7.12 46.27 2.71
1155 1755 8.850156 AGTGCTACAGTTTATCTGAAAACAATT 58.150 29.630 13.79 4.74 46.27 2.32
1156 1756 9.118236 GTGCTACAGTTTATCTGAAAACAATTC 57.882 33.333 13.79 0.00 46.27 2.17
1157 1757 8.296713 TGCTACAGTTTATCTGAAAACAATTCC 58.703 33.333 13.79 4.72 46.27 3.01
1158 1758 8.515414 GCTACAGTTTATCTGAAAACAATTCCT 58.485 33.333 13.79 0.00 46.27 3.36
1159 1759 9.831737 CTACAGTTTATCTGAAAACAATTCCTG 57.168 33.333 13.79 0.00 46.27 3.86
1160 1760 8.237811 ACAGTTTATCTGAAAACAATTCCTGT 57.762 30.769 13.79 0.00 46.27 4.00
1161 1761 8.352942 ACAGTTTATCTGAAAACAATTCCTGTC 58.647 33.333 13.79 0.00 46.27 3.51
1162 1762 8.571336 CAGTTTATCTGAAAACAATTCCTGTCT 58.429 33.333 13.79 0.00 46.27 3.41
1163 1763 8.571336 AGTTTATCTGAAAACAATTCCTGTCTG 58.429 33.333 13.79 0.00 40.97 3.51
1164 1764 8.352942 GTTTATCTGAAAACAATTCCTGTCTGT 58.647 33.333 9.20 0.00 37.23 3.41
1165 1765 5.756195 TCTGAAAACAATTCCTGTCTGTG 57.244 39.130 0.00 0.00 37.23 3.66
1166 1766 5.436175 TCTGAAAACAATTCCTGTCTGTGA 58.564 37.500 0.00 0.00 37.23 3.58
1167 1767 5.885352 TCTGAAAACAATTCCTGTCTGTGAA 59.115 36.000 0.00 0.00 37.23 3.18
1168 1768 6.376864 TCTGAAAACAATTCCTGTCTGTGAAA 59.623 34.615 0.00 0.00 37.23 2.69
1169 1769 7.068593 TCTGAAAACAATTCCTGTCTGTGAAAT 59.931 33.333 0.00 0.00 37.23 2.17
1170 1770 7.555087 TGAAAACAATTCCTGTCTGTGAAATT 58.445 30.769 0.00 0.00 37.23 1.82
1171 1771 8.690884 TGAAAACAATTCCTGTCTGTGAAATTA 58.309 29.630 0.00 0.00 37.23 1.40
1172 1772 8.871686 AAAACAATTCCTGTCTGTGAAATTAC 57.128 30.769 0.00 0.00 37.23 1.89
1173 1773 7.581213 AACAATTCCTGTCTGTGAAATTACA 57.419 32.000 0.00 0.00 37.23 2.41
1174 1774 7.581213 ACAATTCCTGTCTGTGAAATTACAA 57.419 32.000 0.00 0.00 29.87 2.41
1175 1775 7.651808 ACAATTCCTGTCTGTGAAATTACAAG 58.348 34.615 0.00 0.00 29.87 3.16
1176 1776 7.502226 ACAATTCCTGTCTGTGAAATTACAAGA 59.498 33.333 0.00 0.00 29.87 3.02
1177 1777 8.352201 CAATTCCTGTCTGTGAAATTACAAGAA 58.648 33.333 0.00 0.00 29.60 2.52
1178 1778 7.496529 TTCCTGTCTGTGAAATTACAAGAAG 57.503 36.000 0.00 0.00 0.00 2.85
1179 1779 6.591935 TCCTGTCTGTGAAATTACAAGAAGT 58.408 36.000 0.00 0.00 0.00 3.01
1180 1780 7.054124 TCCTGTCTGTGAAATTACAAGAAGTT 58.946 34.615 0.00 0.00 0.00 2.66
1181 1781 7.012327 TCCTGTCTGTGAAATTACAAGAAGTTG 59.988 37.037 0.00 0.00 39.82 3.16
1182 1782 7.012327 CCTGTCTGTGAAATTACAAGAAGTTGA 59.988 37.037 0.00 0.00 37.10 3.18
1183 1783 8.450578 TGTCTGTGAAATTACAAGAAGTTGAT 57.549 30.769 0.00 0.00 37.10 2.57
1184 1784 8.344831 TGTCTGTGAAATTACAAGAAGTTGATG 58.655 33.333 0.00 0.00 37.10 3.07
1185 1785 8.559536 GTCTGTGAAATTACAAGAAGTTGATGA 58.440 33.333 0.00 0.00 37.10 2.92
1186 1786 8.559536 TCTGTGAAATTACAAGAAGTTGATGAC 58.440 33.333 0.00 0.00 37.10 3.06
1187 1787 8.219546 TGTGAAATTACAAGAAGTTGATGACA 57.780 30.769 0.00 0.00 37.10 3.58
1188 1788 8.344831 TGTGAAATTACAAGAAGTTGATGACAG 58.655 33.333 0.00 0.00 37.10 3.51
1189 1789 8.559536 GTGAAATTACAAGAAGTTGATGACAGA 58.440 33.333 0.00 0.00 37.10 3.41
1190 1790 8.777413 TGAAATTACAAGAAGTTGATGACAGAG 58.223 33.333 0.00 0.00 37.10 3.35
1191 1791 7.678947 AATTACAAGAAGTTGATGACAGAGG 57.321 36.000 0.00 0.00 37.10 3.69
1192 1792 4.696479 ACAAGAAGTTGATGACAGAGGT 57.304 40.909 0.00 0.00 37.10 3.85
1193 1793 4.384056 ACAAGAAGTTGATGACAGAGGTG 58.616 43.478 0.00 0.00 37.10 4.00
1194 1794 3.051081 AGAAGTTGATGACAGAGGTGC 57.949 47.619 0.00 0.00 0.00 5.01
1195 1795 2.369860 AGAAGTTGATGACAGAGGTGCA 59.630 45.455 0.00 0.00 0.00 4.57
1196 1796 2.469274 AGTTGATGACAGAGGTGCAG 57.531 50.000 0.00 0.00 0.00 4.41
1197 1797 1.973515 AGTTGATGACAGAGGTGCAGA 59.026 47.619 0.00 0.00 0.00 4.26
1198 1798 2.028294 AGTTGATGACAGAGGTGCAGAG 60.028 50.000 0.00 0.00 0.00 3.35
1199 1799 0.248565 TGATGACAGAGGTGCAGAGC 59.751 55.000 0.00 0.00 0.00 4.09
1200 1800 0.536260 GATGACAGAGGTGCAGAGCT 59.464 55.000 0.00 0.00 0.00 4.09
1201 1801 0.536260 ATGACAGAGGTGCAGAGCTC 59.464 55.000 5.27 5.27 45.57 4.09
1202 1802 1.217779 GACAGAGGTGCAGAGCTCC 59.782 63.158 10.93 2.05 46.27 4.70
1203 1803 2.237534 GACAGAGGTGCAGAGCTCCC 62.238 65.000 10.93 4.15 46.27 4.30
1204 1804 2.686835 AGAGGTGCAGAGCTCCCC 60.687 66.667 10.93 5.66 46.27 4.81
1205 1805 4.154347 GAGGTGCAGAGCTCCCCG 62.154 72.222 10.93 0.00 42.42 5.73
1223 1823 4.172512 CAGCTGGCGGAGGAGCAT 62.173 66.667 5.57 0.00 37.70 3.79
1224 1824 2.444706 AGCTGGCGGAGGAGCATA 60.445 61.111 0.00 0.00 37.70 3.14
1225 1825 2.030262 GCTGGCGGAGGAGCATAG 59.970 66.667 0.00 0.00 39.27 2.23
1226 1826 2.739784 CTGGCGGAGGAGCATAGG 59.260 66.667 0.00 0.00 39.27 2.57
1227 1827 1.834378 CTGGCGGAGGAGCATAGGA 60.834 63.158 0.00 0.00 39.27 2.94
1228 1828 1.382557 TGGCGGAGGAGCATAGGAA 60.383 57.895 0.00 0.00 39.27 3.36
1229 1829 1.369321 GGCGGAGGAGCATAGGAAG 59.631 63.158 0.00 0.00 39.27 3.46
1230 1830 1.115930 GGCGGAGGAGCATAGGAAGA 61.116 60.000 0.00 0.00 39.27 2.87
1231 1831 0.972883 GCGGAGGAGCATAGGAAGAT 59.027 55.000 0.00 0.00 37.05 2.40
1232 1832 1.337635 GCGGAGGAGCATAGGAAGATG 60.338 57.143 0.00 0.00 37.05 2.90
1233 1833 1.967066 CGGAGGAGCATAGGAAGATGT 59.033 52.381 0.00 0.00 0.00 3.06
1234 1834 2.366916 CGGAGGAGCATAGGAAGATGTT 59.633 50.000 0.00 0.00 0.00 2.71
1235 1835 3.553922 CGGAGGAGCATAGGAAGATGTTC 60.554 52.174 0.00 0.00 36.59 3.18
1236 1836 3.553922 GGAGGAGCATAGGAAGATGTTCG 60.554 52.174 0.00 0.00 37.79 3.95
1237 1837 3.300388 AGGAGCATAGGAAGATGTTCGA 58.700 45.455 0.00 0.00 37.79 3.71
1238 1838 3.320541 AGGAGCATAGGAAGATGTTCGAG 59.679 47.826 0.00 0.00 37.79 4.04
1239 1839 3.319405 GGAGCATAGGAAGATGTTCGAGA 59.681 47.826 0.00 0.00 37.79 4.04
1240 1840 4.202161 GGAGCATAGGAAGATGTTCGAGAA 60.202 45.833 0.00 0.00 37.79 2.87
1241 1841 4.942852 AGCATAGGAAGATGTTCGAGAAG 58.057 43.478 0.00 0.00 32.92 2.85
1242 1842 4.646945 AGCATAGGAAGATGTTCGAGAAGA 59.353 41.667 0.00 0.00 32.92 2.87
1243 1843 5.304101 AGCATAGGAAGATGTTCGAGAAGAT 59.696 40.000 0.00 0.00 32.92 2.40
1244 1844 5.633182 GCATAGGAAGATGTTCGAGAAGATC 59.367 44.000 13.16 13.16 40.27 2.75
1252 1852 2.409243 CGAGAAGATCGCCGAGCA 59.591 61.111 4.74 0.00 45.98 4.26
1253 1853 1.007964 CGAGAAGATCGCCGAGCAT 60.008 57.895 4.74 0.00 45.98 3.79
1254 1854 1.274126 CGAGAAGATCGCCGAGCATG 61.274 60.000 4.74 0.00 45.98 4.06
1255 1855 1.555741 GAGAAGATCGCCGAGCATGC 61.556 60.000 10.51 10.51 0.00 4.06
1285 1887 6.276847 AGATGAAGGTACACTCATTCGATTC 58.723 40.000 9.55 0.00 0.00 2.52
1322 1924 1.037493 TGGTCGTGAGTGCTACAGTT 58.963 50.000 0.00 0.00 0.00 3.16
1331 1933 5.633601 CGTGAGTGCTACAGTTTATCTGAAA 59.366 40.000 1.79 0.00 46.27 2.69
1333 1935 7.291567 GTGAGTGCTACAGTTTATCTGAAAAC 58.708 38.462 1.79 7.11 46.27 2.43
1344 1946 9.903682 CAGTTTATCTGAAAACAATTCATGTCT 57.096 29.630 13.79 0.00 46.27 3.41
1345 1947 9.903682 AGTTTATCTGAAAACAATTCATGTCTG 57.096 29.630 13.79 0.00 42.99 3.51
1346 1948 9.683069 GTTTATCTGAAAACAATTCATGTCTGT 57.317 29.630 0.00 0.00 42.99 3.41
1347 1949 9.681692 TTTATCTGAAAACAATTCATGTCTGTG 57.318 29.630 0.00 0.00 42.99 3.66
1348 1950 6.940831 TCTGAAAACAATTCATGTCTGTGA 57.059 33.333 0.00 0.00 42.99 3.58
1349 1951 7.332213 TCTGAAAACAATTCATGTCTGTGAA 57.668 32.000 0.00 0.00 42.99 3.18
1350 1952 7.770201 TCTGAAAACAATTCATGTCTGTGAAA 58.230 30.769 0.00 0.00 42.99 2.69
1351 1953 8.415553 TCTGAAAACAATTCATGTCTGTGAAAT 58.584 29.630 0.00 0.00 42.99 2.17
1352 1954 8.945481 TGAAAACAATTCATGTCTGTGAAATT 57.055 26.923 0.00 0.00 42.99 1.82
1355 1957 9.814899 AAAACAATTCATGTCTGTGAAATTACA 57.185 25.926 0.00 0.00 42.99 2.41
1356 1958 9.814899 AAACAATTCATGTCTGTGAAATTACAA 57.185 25.926 0.00 0.00 42.99 2.41
1357 1959 9.467258 AACAATTCATGTCTGTGAAATTACAAG 57.533 29.630 0.00 0.00 42.99 3.16
1358 1960 8.849168 ACAATTCATGTCTGTGAAATTACAAGA 58.151 29.630 0.00 0.00 41.09 3.02
1359 1961 9.681692 CAATTCATGTCTGTGAAATTACAAGAA 57.318 29.630 0.00 0.00 41.09 2.52
1360 1962 9.903682 AATTCATGTCTGTGAAATTACAAGAAG 57.096 29.630 0.00 0.00 41.09 2.85
1361 1963 8.450578 TTCATGTCTGTGAAATTACAAGAAGT 57.549 30.769 0.00 0.00 35.31 3.01
1362 1964 8.450578 TCATGTCTGTGAAATTACAAGAAGTT 57.549 30.769 0.00 0.00 0.00 2.66
1363 1965 8.344831 TCATGTCTGTGAAATTACAAGAAGTTG 58.655 33.333 0.00 0.00 39.82 3.16
1364 1966 7.857734 TGTCTGTGAAATTACAAGAAGTTGA 57.142 32.000 0.00 0.00 37.10 3.18
1365 1967 8.450578 TGTCTGTGAAATTACAAGAAGTTGAT 57.549 30.769 0.00 0.00 37.10 2.57
1366 1968 8.344831 TGTCTGTGAAATTACAAGAAGTTGATG 58.655 33.333 0.00 0.00 37.10 3.07
1367 1969 8.559536 GTCTGTGAAATTACAAGAAGTTGATGA 58.440 33.333 0.00 0.00 37.10 2.92
1368 1970 8.559536 TCTGTGAAATTACAAGAAGTTGATGAC 58.440 33.333 0.00 0.00 37.10 3.06
1369 1971 8.219546 TGTGAAATTACAAGAAGTTGATGACA 57.780 30.769 0.00 0.00 37.10 3.58
1370 1972 8.344831 TGTGAAATTACAAGAAGTTGATGACAG 58.655 33.333 0.00 0.00 37.10 3.51
1371 1973 8.559536 GTGAAATTACAAGAAGTTGATGACAGA 58.440 33.333 0.00 0.00 37.10 3.41
1372 1974 8.777413 TGAAATTACAAGAAGTTGATGACAGAG 58.223 33.333 0.00 0.00 37.10 3.35
1373 1975 7.678947 AATTACAAGAAGTTGATGACAGAGG 57.321 36.000 0.00 0.00 37.10 3.69
1374 1976 4.696479 ACAAGAAGTTGATGACAGAGGT 57.304 40.909 0.00 0.00 37.10 3.85
1375 1977 4.384056 ACAAGAAGTTGATGACAGAGGTG 58.616 43.478 0.00 0.00 37.10 4.00
1376 1978 3.051081 AGAAGTTGATGACAGAGGTGC 57.949 47.619 0.00 0.00 0.00 5.01
1377 1979 2.369860 AGAAGTTGATGACAGAGGTGCA 59.630 45.455 0.00 0.00 0.00 4.57
1378 1980 2.469274 AGTTGATGACAGAGGTGCAG 57.531 50.000 0.00 0.00 0.00 4.41
1379 1981 1.973515 AGTTGATGACAGAGGTGCAGA 59.026 47.619 0.00 0.00 0.00 4.26
1380 1982 2.028294 AGTTGATGACAGAGGTGCAGAG 60.028 50.000 0.00 0.00 0.00 3.35
1381 1983 0.248565 TGATGACAGAGGTGCAGAGC 59.751 55.000 0.00 0.00 0.00 4.09
1382 1984 0.536260 GATGACAGAGGTGCAGAGCT 59.464 55.000 0.00 0.00 0.00 4.09
1383 1985 0.536260 ATGACAGAGGTGCAGAGCTC 59.464 55.000 5.27 5.27 45.57 4.09
1384 1986 1.217779 GACAGAGGTGCAGAGCTCC 59.782 63.158 10.93 2.05 46.27 4.70
1385 1987 2.237534 GACAGAGGTGCAGAGCTCCC 62.238 65.000 10.93 4.15 46.27 4.30
1386 1988 1.988956 CAGAGGTGCAGAGCTCCCT 60.989 63.158 10.93 9.73 46.27 4.20
1387 1989 1.988956 AGAGGTGCAGAGCTCCCTG 60.989 63.158 13.33 6.31 46.27 4.45
1404 2006 4.087892 GCAGCTGGCGGAGAAGGA 62.088 66.667 17.12 0.00 0.00 3.36
1405 2007 2.186384 CAGCTGGCGGAGAAGGAG 59.814 66.667 5.57 0.00 0.00 3.69
1406 2008 3.780173 AGCTGGCGGAGAAGGAGC 61.780 66.667 0.00 0.00 0.00 4.70
1407 2009 4.087892 GCTGGCGGAGAAGGAGCA 62.088 66.667 0.00 0.00 0.00 4.26
1408 2010 2.906458 CTGGCGGAGAAGGAGCAT 59.094 61.111 0.00 0.00 0.00 3.79
1409 2011 2.032860 GCTGGCGGAGAAGGAGCATA 62.033 60.000 0.00 0.00 0.00 3.14
1410 2012 0.033228 CTGGCGGAGAAGGAGCATAG 59.967 60.000 0.00 0.00 0.00 2.23
1411 2013 1.369321 GGCGGAGAAGGAGCATAGG 59.631 63.158 0.00 0.00 0.00 2.57
1412 2014 1.115930 GGCGGAGAAGGAGCATAGGA 61.116 60.000 0.00 0.00 0.00 2.94
1413 2015 0.753262 GCGGAGAAGGAGCATAGGAA 59.247 55.000 0.00 0.00 0.00 3.36
1414 2016 1.270041 GCGGAGAAGGAGCATAGGAAG 60.270 57.143 0.00 0.00 0.00 3.46
1415 2017 2.311463 CGGAGAAGGAGCATAGGAAGA 58.689 52.381 0.00 0.00 0.00 2.87
1416 2018 2.896685 CGGAGAAGGAGCATAGGAAGAT 59.103 50.000 0.00 0.00 0.00 2.40
1417 2019 3.305950 CGGAGAAGGAGCATAGGAAGATG 60.306 52.174 0.00 0.00 0.00 2.90
1418 2020 3.645687 GGAGAAGGAGCATAGGAAGATGT 59.354 47.826 0.00 0.00 0.00 3.06
1419 2021 4.102367 GGAGAAGGAGCATAGGAAGATGTT 59.898 45.833 0.00 0.00 0.00 2.71
1420 2022 5.289083 AGAAGGAGCATAGGAAGATGTTC 57.711 43.478 0.00 0.00 36.59 3.18
1421 2023 3.742433 AGGAGCATAGGAAGATGTTCG 57.258 47.619 0.00 0.00 37.79 3.95
1422 2024 3.300388 AGGAGCATAGGAAGATGTTCGA 58.700 45.455 0.00 0.00 37.79 3.71
1423 2025 3.320541 AGGAGCATAGGAAGATGTTCGAG 59.679 47.826 0.00 0.00 37.79 4.04
1424 2026 3.319405 GGAGCATAGGAAGATGTTCGAGA 59.681 47.826 0.00 0.00 37.79 4.04
1425 2027 4.202161 GGAGCATAGGAAGATGTTCGAGAA 60.202 45.833 0.00 0.00 37.79 2.87
1426 2028 4.942852 AGCATAGGAAGATGTTCGAGAAG 58.057 43.478 0.00 0.00 32.92 2.85
1427 2029 4.646945 AGCATAGGAAGATGTTCGAGAAGA 59.353 41.667 0.00 0.00 32.92 2.87
1428 2030 5.304101 AGCATAGGAAGATGTTCGAGAAGAT 59.696 40.000 0.00 0.00 32.92 2.40
2677 3284 8.960591 ACAGTTCCATCCATAAGAAAATAACAG 58.039 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.593679 TCTCAACCTCACAGTTATCTATTTCAA 58.406 33.333 0.00 0.00 0.00 2.69
1 2 8.134202 TCTCAACCTCACAGTTATCTATTTCA 57.866 34.615 0.00 0.00 0.00 2.69
2 3 9.606631 AATCTCAACCTCACAGTTATCTATTTC 57.393 33.333 0.00 0.00 0.00 2.17
3 4 9.388506 CAATCTCAACCTCACAGTTATCTATTT 57.611 33.333 0.00 0.00 0.00 1.40
4 5 8.762645 TCAATCTCAACCTCACAGTTATCTATT 58.237 33.333 0.00 0.00 0.00 1.73
5 6 8.311395 TCAATCTCAACCTCACAGTTATCTAT 57.689 34.615 0.00 0.00 0.00 1.98
6 7 7.718334 TCAATCTCAACCTCACAGTTATCTA 57.282 36.000 0.00 0.00 0.00 1.98
7 8 6.611613 TCAATCTCAACCTCACAGTTATCT 57.388 37.500 0.00 0.00 0.00 1.98
8 9 7.550551 TCAATCAATCTCAACCTCACAGTTATC 59.449 37.037 0.00 0.00 0.00 1.75
9 10 7.397221 TCAATCAATCTCAACCTCACAGTTAT 58.603 34.615 0.00 0.00 0.00 1.89
10 11 6.768483 TCAATCAATCTCAACCTCACAGTTA 58.232 36.000 0.00 0.00 0.00 2.24
11 12 5.624159 TCAATCAATCTCAACCTCACAGTT 58.376 37.500 0.00 0.00 0.00 3.16
12 13 5.012458 TCTCAATCAATCTCAACCTCACAGT 59.988 40.000 0.00 0.00 0.00 3.55
13 14 5.350914 GTCTCAATCAATCTCAACCTCACAG 59.649 44.000 0.00 0.00 0.00 3.66
14 15 5.012458 AGTCTCAATCAATCTCAACCTCACA 59.988 40.000 0.00 0.00 0.00 3.58
15 16 5.486526 AGTCTCAATCAATCTCAACCTCAC 58.513 41.667 0.00 0.00 0.00 3.51
16 17 5.752036 AGTCTCAATCAATCTCAACCTCA 57.248 39.130 0.00 0.00 0.00 3.86
17 18 7.040823 ACAAAAGTCTCAATCAATCTCAACCTC 60.041 37.037 0.00 0.00 0.00 3.85
18 19 6.774656 ACAAAAGTCTCAATCAATCTCAACCT 59.225 34.615 0.00 0.00 0.00 3.50
19 20 6.974965 ACAAAAGTCTCAATCAATCTCAACC 58.025 36.000 0.00 0.00 0.00 3.77
20 21 9.950680 TTAACAAAAGTCTCAATCAATCTCAAC 57.049 29.630 0.00 0.00 0.00 3.18
33 34 9.565213 CCATCATTGAGATTTAACAAAAGTCTC 57.435 33.333 3.97 3.97 33.72 3.36
34 35 9.082313 ACCATCATTGAGATTTAACAAAAGTCT 57.918 29.630 0.00 0.00 33.72 3.24
40 41 9.109393 GCTACTACCATCATTGAGATTTAACAA 57.891 33.333 0.00 0.00 33.72 2.83
41 42 7.715249 GGCTACTACCATCATTGAGATTTAACA 59.285 37.037 0.00 0.00 33.72 2.41
42 43 7.095607 CGGCTACTACCATCATTGAGATTTAAC 60.096 40.741 0.00 0.00 33.72 2.01
43 44 6.929049 CGGCTACTACCATCATTGAGATTTAA 59.071 38.462 0.00 0.00 33.72 1.52
44 45 6.041637 ACGGCTACTACCATCATTGAGATTTA 59.958 38.462 0.00 0.00 33.72 1.40
45 46 5.163301 ACGGCTACTACCATCATTGAGATTT 60.163 40.000 0.00 0.00 33.72 2.17
46 47 4.345257 ACGGCTACTACCATCATTGAGATT 59.655 41.667 0.00 0.00 33.72 2.40
47 48 3.898123 ACGGCTACTACCATCATTGAGAT 59.102 43.478 0.00 0.00 37.48 2.75
48 49 3.296854 ACGGCTACTACCATCATTGAGA 58.703 45.455 0.00 0.00 0.00 3.27
49 50 3.319405 AGACGGCTACTACCATCATTGAG 59.681 47.826 0.00 0.00 0.00 3.02
50 51 3.296854 AGACGGCTACTACCATCATTGA 58.703 45.455 0.00 0.00 0.00 2.57
51 52 3.735237 AGACGGCTACTACCATCATTG 57.265 47.619 0.00 0.00 0.00 2.82
52 53 6.420913 AATTAGACGGCTACTACCATCATT 57.579 37.500 0.00 0.00 0.00 2.57
53 54 6.420913 AAATTAGACGGCTACTACCATCAT 57.579 37.500 0.00 0.00 0.00 2.45
54 55 5.864418 AAATTAGACGGCTACTACCATCA 57.136 39.130 0.00 0.00 0.00 3.07
55 56 7.544915 GGATTAAATTAGACGGCTACTACCATC 59.455 40.741 0.00 0.00 0.00 3.51
56 57 7.234988 AGGATTAAATTAGACGGCTACTACCAT 59.765 37.037 0.00 0.00 0.00 3.55
57 58 6.552350 AGGATTAAATTAGACGGCTACTACCA 59.448 38.462 0.00 0.00 0.00 3.25
58 59 6.990798 AGGATTAAATTAGACGGCTACTACC 58.009 40.000 0.00 0.00 0.00 3.18
59 60 8.571336 TGTAGGATTAAATTAGACGGCTACTAC 58.429 37.037 0.00 4.49 0.00 2.73
60 61 8.571336 GTGTAGGATTAAATTAGACGGCTACTA 58.429 37.037 0.00 0.00 0.00 1.82
61 62 7.432059 GTGTAGGATTAAATTAGACGGCTACT 58.568 38.462 0.00 0.00 0.00 2.57
62 63 6.361748 CGTGTAGGATTAAATTAGACGGCTAC 59.638 42.308 0.00 0.00 32.48 3.58
63 64 6.441274 CGTGTAGGATTAAATTAGACGGCTA 58.559 40.000 0.00 0.00 32.48 3.93
64 65 5.287226 CGTGTAGGATTAAATTAGACGGCT 58.713 41.667 0.00 0.00 32.48 5.52
65 66 4.084693 GCGTGTAGGATTAAATTAGACGGC 60.085 45.833 12.47 0.00 35.43 5.68
66 67 5.045215 TGCGTGTAGGATTAAATTAGACGG 58.955 41.667 12.47 0.00 35.43 4.79
67 68 5.517411 TGTGCGTGTAGGATTAAATTAGACG 59.483 40.000 8.56 8.56 37.20 4.18
68 69 6.897259 TGTGCGTGTAGGATTAAATTAGAC 57.103 37.500 0.00 0.00 0.00 2.59
69 70 7.324935 TCTTGTGCGTGTAGGATTAAATTAGA 58.675 34.615 0.00 0.00 0.00 2.10
70 71 7.534085 TCTTGTGCGTGTAGGATTAAATTAG 57.466 36.000 0.00 0.00 0.00 1.73
71 72 7.908827 TTCTTGTGCGTGTAGGATTAAATTA 57.091 32.000 0.00 0.00 0.00 1.40
72 73 6.811253 TTCTTGTGCGTGTAGGATTAAATT 57.189 33.333 0.00 0.00 0.00 1.82
73 74 6.811253 TTTCTTGTGCGTGTAGGATTAAAT 57.189 33.333 0.00 0.00 0.00 1.40
74 75 6.621316 TTTTCTTGTGCGTGTAGGATTAAA 57.379 33.333 0.00 0.00 0.00 1.52
75 76 6.607689 CATTTTCTTGTGCGTGTAGGATTAA 58.392 36.000 0.00 0.00 0.00 1.40
76 77 5.391523 GCATTTTCTTGTGCGTGTAGGATTA 60.392 40.000 0.00 0.00 0.00 1.75
77 78 4.615912 GCATTTTCTTGTGCGTGTAGGATT 60.616 41.667 0.00 0.00 0.00 3.01
78 79 3.119849 GCATTTTCTTGTGCGTGTAGGAT 60.120 43.478 0.00 0.00 0.00 3.24
79 80 2.225491 GCATTTTCTTGTGCGTGTAGGA 59.775 45.455 0.00 0.00 0.00 2.94
80 81 2.031245 TGCATTTTCTTGTGCGTGTAGG 60.031 45.455 0.00 0.00 44.11 3.18
81 82 2.973224 GTGCATTTTCTTGTGCGTGTAG 59.027 45.455 0.00 0.00 44.11 2.74
82 83 2.287308 GGTGCATTTTCTTGTGCGTGTA 60.287 45.455 0.00 0.00 44.11 2.90
83 84 1.535860 GGTGCATTTTCTTGTGCGTGT 60.536 47.619 0.00 0.00 44.11 4.49
84 85 1.130955 GGTGCATTTTCTTGTGCGTG 58.869 50.000 0.00 0.00 44.11 5.34
85 86 0.031994 GGGTGCATTTTCTTGTGCGT 59.968 50.000 0.00 0.00 44.11 5.24
86 87 0.031857 TGGGTGCATTTTCTTGTGCG 59.968 50.000 0.00 0.00 44.11 5.34
87 88 2.340337 GATGGGTGCATTTTCTTGTGC 58.660 47.619 0.00 0.00 41.61 4.57
88 89 2.299582 TGGATGGGTGCATTTTCTTGTG 59.700 45.455 0.00 0.00 0.00 3.33
89 90 2.607499 TGGATGGGTGCATTTTCTTGT 58.393 42.857 0.00 0.00 0.00 3.16
90 91 3.244146 TGTTGGATGGGTGCATTTTCTTG 60.244 43.478 0.00 0.00 0.00 3.02
91 92 2.971330 TGTTGGATGGGTGCATTTTCTT 59.029 40.909 0.00 0.00 0.00 2.52
92 93 2.299867 GTGTTGGATGGGTGCATTTTCT 59.700 45.455 0.00 0.00 0.00 2.52
93 94 2.036992 TGTGTTGGATGGGTGCATTTTC 59.963 45.455 0.00 0.00 0.00 2.29
94 95 2.045524 TGTGTTGGATGGGTGCATTTT 58.954 42.857 0.00 0.00 0.00 1.82
95 96 1.714541 TGTGTTGGATGGGTGCATTT 58.285 45.000 0.00 0.00 0.00 2.32
96 97 1.826720 GATGTGTTGGATGGGTGCATT 59.173 47.619 0.00 0.00 0.00 3.56
97 98 1.272592 TGATGTGTTGGATGGGTGCAT 60.273 47.619 0.00 0.00 0.00 3.96
98 99 0.112025 TGATGTGTTGGATGGGTGCA 59.888 50.000 0.00 0.00 0.00 4.57
99 100 0.527565 GTGATGTGTTGGATGGGTGC 59.472 55.000 0.00 0.00 0.00 5.01
100 101 1.541147 GTGTGATGTGTTGGATGGGTG 59.459 52.381 0.00 0.00 0.00 4.61
101 102 1.547675 GGTGTGATGTGTTGGATGGGT 60.548 52.381 0.00 0.00 0.00 4.51
102 103 1.176527 GGTGTGATGTGTTGGATGGG 58.823 55.000 0.00 0.00 0.00 4.00
103 104 2.205022 AGGTGTGATGTGTTGGATGG 57.795 50.000 0.00 0.00 0.00 3.51
104 105 4.589216 AAAAGGTGTGATGTGTTGGATG 57.411 40.909 0.00 0.00 0.00 3.51
155 156 9.909644 ACAGTACTATATATTCTAGCAAAACCG 57.090 33.333 0.00 0.00 0.00 4.44
210 211 2.742053 CCATCACGACGTTTGATCCTTT 59.258 45.455 9.93 0.00 30.98 3.11
607 826 1.910580 TTCGGGACTGGCCTTCATCC 61.911 60.000 3.32 5.42 36.66 3.51
850 1075 0.618968 AGATTCGGAAGTGGGAGGCT 60.619 55.000 0.00 0.00 0.00 4.58
1062 1662 3.057547 CTCCTCAGGACGCTCGGTG 62.058 68.421 0.00 0.00 0.00 4.94
1063 1663 2.559922 ATCTCCTCAGGACGCTCGGT 62.560 60.000 0.00 0.00 0.00 4.69
1068 1668 1.205893 ACTTTCATCTCCTCAGGACGC 59.794 52.381 0.00 0.00 0.00 5.19
1069 1669 3.444034 TGTACTTTCATCTCCTCAGGACG 59.556 47.826 0.00 0.00 0.00 4.79
1070 1670 4.464597 AGTGTACTTTCATCTCCTCAGGAC 59.535 45.833 0.00 0.00 0.00 3.85
1071 1671 4.678256 AGTGTACTTTCATCTCCTCAGGA 58.322 43.478 0.00 0.00 0.00 3.86
1072 1672 5.413309 AAGTGTACTTTCATCTCCTCAGG 57.587 43.478 0.00 0.00 30.82 3.86
1073 1673 7.433719 CGAATAAGTGTACTTTCATCTCCTCAG 59.566 40.741 2.20 0.00 37.40 3.35
1074 1674 7.122204 TCGAATAAGTGTACTTTCATCTCCTCA 59.878 37.037 2.20 0.00 37.40 3.86
1075 1675 7.481642 TCGAATAAGTGTACTTTCATCTCCTC 58.518 38.462 2.20 0.00 37.40 3.71
1076 1676 7.406031 TCGAATAAGTGTACTTTCATCTCCT 57.594 36.000 2.20 0.00 37.40 3.69
1077 1677 8.649973 AATCGAATAAGTGTACTTTCATCTCC 57.350 34.615 2.20 0.00 37.40 3.71
1078 1678 8.756864 GGAATCGAATAAGTGTACTTTCATCTC 58.243 37.037 2.20 0.00 37.40 2.75
1079 1679 8.258007 TGGAATCGAATAAGTGTACTTTCATCT 58.742 33.333 2.20 0.00 37.40 2.90
1080 1680 8.420374 TGGAATCGAATAAGTGTACTTTCATC 57.580 34.615 2.20 0.00 37.40 2.92
1081 1681 8.830580 CATGGAATCGAATAAGTGTACTTTCAT 58.169 33.333 2.20 0.00 37.40 2.57
1082 1682 7.822334 ACATGGAATCGAATAAGTGTACTTTCA 59.178 33.333 2.20 0.00 37.40 2.69
1083 1683 8.197988 ACATGGAATCGAATAAGTGTACTTTC 57.802 34.615 2.20 0.00 37.40 2.62
1084 1684 8.561738 AACATGGAATCGAATAAGTGTACTTT 57.438 30.769 2.20 0.00 37.40 2.66
1085 1685 8.450964 CAAACATGGAATCGAATAAGTGTACTT 58.549 33.333 0.00 2.51 39.85 2.24
1086 1686 7.822334 TCAAACATGGAATCGAATAAGTGTACT 59.178 33.333 0.00 0.00 0.00 2.73
1087 1687 7.970384 TCAAACATGGAATCGAATAAGTGTAC 58.030 34.615 0.00 0.00 0.00 2.90
1088 1688 8.731275 ATCAAACATGGAATCGAATAAGTGTA 57.269 30.769 0.00 0.00 0.00 2.90
1089 1689 7.201732 GGATCAAACATGGAATCGAATAAGTGT 60.202 37.037 0.00 0.00 0.00 3.55
1090 1690 7.134815 GGATCAAACATGGAATCGAATAAGTG 58.865 38.462 0.00 0.00 0.00 3.16
1091 1691 6.828273 TGGATCAAACATGGAATCGAATAAGT 59.172 34.615 0.00 0.00 0.00 2.24
1092 1692 7.012704 ACTGGATCAAACATGGAATCGAATAAG 59.987 37.037 0.00 0.00 0.00 1.73
1093 1693 6.828273 ACTGGATCAAACATGGAATCGAATAA 59.172 34.615 0.00 0.00 0.00 1.40
1094 1694 6.260714 CACTGGATCAAACATGGAATCGAATA 59.739 38.462 0.00 0.00 0.00 1.75
1095 1695 5.066893 CACTGGATCAAACATGGAATCGAAT 59.933 40.000 0.00 0.00 0.00 3.34
1096 1696 4.395854 CACTGGATCAAACATGGAATCGAA 59.604 41.667 0.00 0.00 0.00 3.71
1097 1697 3.940852 CACTGGATCAAACATGGAATCGA 59.059 43.478 0.00 0.00 0.00 3.59
1098 1698 3.691118 ACACTGGATCAAACATGGAATCG 59.309 43.478 0.00 0.00 0.00 3.34
1099 1699 5.404946 CAACACTGGATCAAACATGGAATC 58.595 41.667 0.00 0.00 0.00 2.52
1100 1700 4.221262 CCAACACTGGATCAAACATGGAAT 59.779 41.667 0.00 0.00 46.92 3.01
1101 1701 3.573538 CCAACACTGGATCAAACATGGAA 59.426 43.478 0.00 0.00 46.92 3.53
1102 1702 3.156293 CCAACACTGGATCAAACATGGA 58.844 45.455 0.00 0.00 46.92 3.41
1103 1703 2.892852 ACCAACACTGGATCAAACATGG 59.107 45.455 0.00 0.00 46.92 3.66
1104 1704 3.365264 CGACCAACACTGGATCAAACATG 60.365 47.826 0.00 0.00 46.92 3.21
1105 1705 2.813754 CGACCAACACTGGATCAAACAT 59.186 45.455 0.00 0.00 46.92 2.71
1106 1706 2.217750 CGACCAACACTGGATCAAACA 58.782 47.619 0.00 0.00 46.92 2.83
1107 1707 2.032030 CACGACCAACACTGGATCAAAC 60.032 50.000 0.00 0.00 46.92 2.93
1108 1708 2.158885 TCACGACCAACACTGGATCAAA 60.159 45.455 0.00 0.00 46.92 2.69
1109 1709 1.414550 TCACGACCAACACTGGATCAA 59.585 47.619 0.00 0.00 46.92 2.57
1110 1710 1.000843 CTCACGACCAACACTGGATCA 59.999 52.381 0.00 0.00 46.92 2.92
1111 1711 1.000955 ACTCACGACCAACACTGGATC 59.999 52.381 0.00 0.00 46.92 3.36
1112 1712 1.048601 ACTCACGACCAACACTGGAT 58.951 50.000 0.00 0.00 46.92 3.41
1113 1713 0.104120 CACTCACGACCAACACTGGA 59.896 55.000 0.00 0.00 46.92 3.86
1115 1715 0.530650 AGCACTCACGACCAACACTG 60.531 55.000 0.00 0.00 0.00 3.66
1116 1716 1.037493 TAGCACTCACGACCAACACT 58.963 50.000 0.00 0.00 0.00 3.55
1117 1717 1.137513 GTAGCACTCACGACCAACAC 58.862 55.000 0.00 0.00 0.00 3.32
1118 1718 0.747852 TGTAGCACTCACGACCAACA 59.252 50.000 0.00 0.00 0.00 3.33
1119 1719 1.269621 ACTGTAGCACTCACGACCAAC 60.270 52.381 0.00 0.00 0.00 3.77
1120 1720 1.037493 ACTGTAGCACTCACGACCAA 58.963 50.000 0.00 0.00 0.00 3.67
1121 1721 1.037493 AACTGTAGCACTCACGACCA 58.963 50.000 0.00 0.00 0.00 4.02
1122 1722 2.150397 AAACTGTAGCACTCACGACC 57.850 50.000 0.00 0.00 0.00 4.79
1123 1723 4.559251 CAGATAAACTGTAGCACTCACGAC 59.441 45.833 0.00 0.00 41.30 4.34
1124 1724 4.457949 TCAGATAAACTGTAGCACTCACGA 59.542 41.667 0.00 0.00 45.86 4.35
1125 1725 4.733850 TCAGATAAACTGTAGCACTCACG 58.266 43.478 0.00 0.00 45.86 4.35
1126 1726 7.042051 TGTTTTCAGATAAACTGTAGCACTCAC 60.042 37.037 0.00 0.00 45.86 3.51
1127 1727 6.989759 TGTTTTCAGATAAACTGTAGCACTCA 59.010 34.615 0.00 0.00 45.86 3.41
1128 1728 7.421530 TGTTTTCAGATAAACTGTAGCACTC 57.578 36.000 0.00 0.00 45.86 3.51
1129 1729 7.801716 TTGTTTTCAGATAAACTGTAGCACT 57.198 32.000 0.00 0.00 45.86 4.40
1130 1730 9.118236 GAATTGTTTTCAGATAAACTGTAGCAC 57.882 33.333 0.00 0.00 45.86 4.40
1131 1731 8.296713 GGAATTGTTTTCAGATAAACTGTAGCA 58.703 33.333 0.00 0.00 45.86 3.49
1132 1732 8.515414 AGGAATTGTTTTCAGATAAACTGTAGC 58.485 33.333 0.00 0.00 45.86 3.58
1133 1733 9.831737 CAGGAATTGTTTTCAGATAAACTGTAG 57.168 33.333 0.00 0.00 45.86 2.74
1134 1734 9.349713 ACAGGAATTGTTTTCAGATAAACTGTA 57.650 29.630 0.00 0.00 41.31 2.74
1135 1735 8.237811 ACAGGAATTGTTTTCAGATAAACTGT 57.762 30.769 0.00 0.00 41.31 3.55
1136 1736 8.571336 AGACAGGAATTGTTTTCAGATAAACTG 58.429 33.333 0.00 0.00 43.15 3.16
1137 1737 8.571336 CAGACAGGAATTGTTTTCAGATAAACT 58.429 33.333 0.00 0.00 41.05 2.66
1138 1738 8.352942 ACAGACAGGAATTGTTTTCAGATAAAC 58.647 33.333 0.00 0.00 41.05 2.01
1139 1739 8.352201 CACAGACAGGAATTGTTTTCAGATAAA 58.648 33.333 0.00 0.00 41.05 1.40
1140 1740 7.719193 TCACAGACAGGAATTGTTTTCAGATAA 59.281 33.333 0.00 0.00 41.05 1.75
1141 1741 7.223584 TCACAGACAGGAATTGTTTTCAGATA 58.776 34.615 0.00 0.00 41.05 1.98
1142 1742 6.064060 TCACAGACAGGAATTGTTTTCAGAT 58.936 36.000 0.00 0.00 41.05 2.90
1143 1743 5.436175 TCACAGACAGGAATTGTTTTCAGA 58.564 37.500 0.00 0.00 41.05 3.27
1144 1744 5.756195 TCACAGACAGGAATTGTTTTCAG 57.244 39.130 0.00 0.00 41.05 3.02
1145 1745 6.522625 TTTCACAGACAGGAATTGTTTTCA 57.477 33.333 0.00 0.00 41.05 2.69
1146 1746 8.968242 GTAATTTCACAGACAGGAATTGTTTTC 58.032 33.333 0.00 0.00 41.05 2.29
1147 1747 8.474025 TGTAATTTCACAGACAGGAATTGTTTT 58.526 29.630 0.00 0.00 41.05 2.43
1148 1748 8.006298 TGTAATTTCACAGACAGGAATTGTTT 57.994 30.769 0.00 0.00 41.05 2.83
1149 1749 7.581213 TGTAATTTCACAGACAGGAATTGTT 57.419 32.000 0.00 0.00 41.05 2.83
1150 1750 7.502226 TCTTGTAATTTCACAGACAGGAATTGT 59.498 33.333 0.00 0.00 44.55 2.71
1151 1751 7.874940 TCTTGTAATTTCACAGACAGGAATTG 58.125 34.615 0.00 0.00 0.00 2.32
1152 1752 8.463930 TTCTTGTAATTTCACAGACAGGAATT 57.536 30.769 0.00 0.00 34.25 2.17
1153 1753 7.721399 ACTTCTTGTAATTTCACAGACAGGAAT 59.279 33.333 2.86 0.00 37.30 3.01
1154 1754 7.054124 ACTTCTTGTAATTTCACAGACAGGAA 58.946 34.615 2.55 2.55 36.08 3.36
1155 1755 6.591935 ACTTCTTGTAATTTCACAGACAGGA 58.408 36.000 0.00 0.00 0.00 3.86
1156 1756 6.867662 ACTTCTTGTAATTTCACAGACAGG 57.132 37.500 0.00 0.00 0.00 4.00
1157 1757 7.919690 TCAACTTCTTGTAATTTCACAGACAG 58.080 34.615 0.00 0.00 0.00 3.51
1158 1758 7.857734 TCAACTTCTTGTAATTTCACAGACA 57.142 32.000 0.00 0.00 0.00 3.41
1159 1759 8.559536 TCATCAACTTCTTGTAATTTCACAGAC 58.440 33.333 0.00 0.00 0.00 3.51
1160 1760 8.559536 GTCATCAACTTCTTGTAATTTCACAGA 58.440 33.333 0.00 0.00 0.00 3.41
1161 1761 8.344831 TGTCATCAACTTCTTGTAATTTCACAG 58.655 33.333 0.00 0.00 0.00 3.66
1162 1762 8.219546 TGTCATCAACTTCTTGTAATTTCACA 57.780 30.769 0.00 0.00 0.00 3.58
1163 1763 8.559536 TCTGTCATCAACTTCTTGTAATTTCAC 58.440 33.333 0.00 0.00 0.00 3.18
1164 1764 8.675705 TCTGTCATCAACTTCTTGTAATTTCA 57.324 30.769 0.00 0.00 0.00 2.69
1165 1765 8.233190 CCTCTGTCATCAACTTCTTGTAATTTC 58.767 37.037 0.00 0.00 0.00 2.17
1166 1766 7.721399 ACCTCTGTCATCAACTTCTTGTAATTT 59.279 33.333 0.00 0.00 0.00 1.82
1167 1767 7.173907 CACCTCTGTCATCAACTTCTTGTAATT 59.826 37.037 0.00 0.00 0.00 1.40
1168 1768 6.652481 CACCTCTGTCATCAACTTCTTGTAAT 59.348 38.462 0.00 0.00 0.00 1.89
1169 1769 5.991606 CACCTCTGTCATCAACTTCTTGTAA 59.008 40.000 0.00 0.00 0.00 2.41
1170 1770 5.541845 CACCTCTGTCATCAACTTCTTGTA 58.458 41.667 0.00 0.00 0.00 2.41
1171 1771 4.384056 CACCTCTGTCATCAACTTCTTGT 58.616 43.478 0.00 0.00 0.00 3.16
1172 1772 3.188048 GCACCTCTGTCATCAACTTCTTG 59.812 47.826 0.00 0.00 0.00 3.02
1173 1773 3.181451 TGCACCTCTGTCATCAACTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
1174 1774 2.369860 TGCACCTCTGTCATCAACTTCT 59.630 45.455 0.00 0.00 0.00 2.85
1175 1775 2.740981 CTGCACCTCTGTCATCAACTTC 59.259 50.000 0.00 0.00 0.00 3.01
1176 1776 2.369860 TCTGCACCTCTGTCATCAACTT 59.630 45.455 0.00 0.00 0.00 2.66
1177 1777 1.973515 TCTGCACCTCTGTCATCAACT 59.026 47.619 0.00 0.00 0.00 3.16
1178 1778 2.344950 CTCTGCACCTCTGTCATCAAC 58.655 52.381 0.00 0.00 0.00 3.18
1179 1779 1.338484 GCTCTGCACCTCTGTCATCAA 60.338 52.381 0.00 0.00 0.00 2.57
1180 1780 0.248565 GCTCTGCACCTCTGTCATCA 59.751 55.000 0.00 0.00 0.00 3.07
1181 1781 0.536260 AGCTCTGCACCTCTGTCATC 59.464 55.000 0.00 0.00 0.00 2.92
1182 1782 0.536260 GAGCTCTGCACCTCTGTCAT 59.464 55.000 6.43 0.00 0.00 3.06
1183 1783 1.539560 GGAGCTCTGCACCTCTGTCA 61.540 60.000 14.64 0.00 36.40 3.58
1184 1784 1.217779 GGAGCTCTGCACCTCTGTC 59.782 63.158 14.64 0.00 36.40 3.51
1185 1785 2.289532 GGGAGCTCTGCACCTCTGT 61.290 63.158 14.64 0.00 39.22 3.41
1186 1786 2.583520 GGGAGCTCTGCACCTCTG 59.416 66.667 14.64 0.00 39.22 3.35
1187 1787 2.686835 GGGGAGCTCTGCACCTCT 60.687 66.667 14.64 0.00 36.84 3.69
1188 1788 4.154347 CGGGGAGCTCTGCACCTC 62.154 72.222 14.64 0.00 39.22 3.85
1194 1794 4.834453 CAGCTGCGGGGAGCTCTG 62.834 72.222 14.64 5.25 46.85 3.35
1206 1806 2.712325 CTATGCTCCTCCGCCAGCTG 62.712 65.000 6.78 6.78 36.53 4.24
1207 1807 2.444706 TATGCTCCTCCGCCAGCT 60.445 61.111 0.00 0.00 36.53 4.24
1208 1808 2.030262 CTATGCTCCTCCGCCAGC 59.970 66.667 0.00 0.00 36.08 4.85
1209 1809 1.402896 TTCCTATGCTCCTCCGCCAG 61.403 60.000 0.00 0.00 0.00 4.85
1210 1810 1.382557 TTCCTATGCTCCTCCGCCA 60.383 57.895 0.00 0.00 0.00 5.69
1211 1811 1.115930 TCTTCCTATGCTCCTCCGCC 61.116 60.000 0.00 0.00 0.00 6.13
1212 1812 0.972883 ATCTTCCTATGCTCCTCCGC 59.027 55.000 0.00 0.00 0.00 5.54
1213 1813 1.967066 ACATCTTCCTATGCTCCTCCG 59.033 52.381 0.00 0.00 0.00 4.63
1214 1814 3.553922 CGAACATCTTCCTATGCTCCTCC 60.554 52.174 0.00 0.00 0.00 4.30
1215 1815 3.319405 TCGAACATCTTCCTATGCTCCTC 59.681 47.826 0.00 0.00 0.00 3.71
1216 1816 3.300388 TCGAACATCTTCCTATGCTCCT 58.700 45.455 0.00 0.00 0.00 3.69
1217 1817 3.319405 TCTCGAACATCTTCCTATGCTCC 59.681 47.826 0.00 0.00 0.00 4.70
1218 1818 4.576216 TCTCGAACATCTTCCTATGCTC 57.424 45.455 0.00 0.00 0.00 4.26
1219 1819 4.646945 TCTTCTCGAACATCTTCCTATGCT 59.353 41.667 0.00 0.00 0.00 3.79
1220 1820 4.938080 TCTTCTCGAACATCTTCCTATGC 58.062 43.478 0.00 0.00 0.00 3.14
1236 1836 1.555741 GCATGCTCGGCGATCTTCTC 61.556 60.000 11.27 0.00 0.00 2.87
1237 1837 1.593750 GCATGCTCGGCGATCTTCT 60.594 57.895 11.27 0.00 0.00 2.85
1238 1838 2.602322 GGCATGCTCGGCGATCTTC 61.602 63.158 18.92 0.57 0.00 2.87
1239 1839 2.590007 GGCATGCTCGGCGATCTT 60.590 61.111 18.92 0.70 0.00 2.40
1246 1846 2.865598 ATCTCCTCGGCATGCTCGG 61.866 63.158 18.92 15.00 0.00 4.63
1247 1847 1.664017 CATCTCCTCGGCATGCTCG 60.664 63.158 18.92 18.81 0.00 5.03
1248 1848 0.105593 TTCATCTCCTCGGCATGCTC 59.894 55.000 18.92 6.88 0.00 4.26
1249 1849 0.106335 CTTCATCTCCTCGGCATGCT 59.894 55.000 18.92 0.00 0.00 3.79
1250 1850 0.883814 CCTTCATCTCCTCGGCATGC 60.884 60.000 9.90 9.90 0.00 4.06
1251 1851 0.467384 ACCTTCATCTCCTCGGCATG 59.533 55.000 0.00 0.00 0.00 4.06
1252 1852 1.689273 GTACCTTCATCTCCTCGGCAT 59.311 52.381 0.00 0.00 0.00 4.40
1253 1853 1.112113 GTACCTTCATCTCCTCGGCA 58.888 55.000 0.00 0.00 0.00 5.69
1254 1854 1.112113 TGTACCTTCATCTCCTCGGC 58.888 55.000 0.00 0.00 0.00 5.54
1255 1855 2.359531 GAGTGTACCTTCATCTCCTCGG 59.640 54.545 0.00 0.00 0.00 4.63
1322 1924 9.065798 TCACAGACATGAATTGTTTTCAGATAA 57.934 29.630 0.00 0.00 39.18 1.75
1331 1933 9.467258 CTTGTAATTTCACAGACATGAATTGTT 57.533 29.630 0.00 0.00 39.18 2.83
1333 1935 9.681692 TTCTTGTAATTTCACAGACATGAATTG 57.318 29.630 0.00 0.00 38.37 2.32
1344 1946 8.219546 TGTCATCAACTTCTTGTAATTTCACA 57.780 30.769 0.00 0.00 0.00 3.58
1345 1947 8.559536 TCTGTCATCAACTTCTTGTAATTTCAC 58.440 33.333 0.00 0.00 0.00 3.18
1346 1948 8.675705 TCTGTCATCAACTTCTTGTAATTTCA 57.324 30.769 0.00 0.00 0.00 2.69
1347 1949 8.233190 CCTCTGTCATCAACTTCTTGTAATTTC 58.767 37.037 0.00 0.00 0.00 2.17
1348 1950 7.721399 ACCTCTGTCATCAACTTCTTGTAATTT 59.279 33.333 0.00 0.00 0.00 1.82
1349 1951 7.173907 CACCTCTGTCATCAACTTCTTGTAATT 59.826 37.037 0.00 0.00 0.00 1.40
1350 1952 6.652481 CACCTCTGTCATCAACTTCTTGTAAT 59.348 38.462 0.00 0.00 0.00 1.89
1351 1953 5.991606 CACCTCTGTCATCAACTTCTTGTAA 59.008 40.000 0.00 0.00 0.00 2.41
1352 1954 5.541845 CACCTCTGTCATCAACTTCTTGTA 58.458 41.667 0.00 0.00 0.00 2.41
1353 1955 4.384056 CACCTCTGTCATCAACTTCTTGT 58.616 43.478 0.00 0.00 0.00 3.16
1354 1956 3.188048 GCACCTCTGTCATCAACTTCTTG 59.812 47.826 0.00 0.00 0.00 3.02
1355 1957 3.181451 TGCACCTCTGTCATCAACTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
1356 1958 2.369860 TGCACCTCTGTCATCAACTTCT 59.630 45.455 0.00 0.00 0.00 2.85
1357 1959 2.740981 CTGCACCTCTGTCATCAACTTC 59.259 50.000 0.00 0.00 0.00 3.01
1358 1960 2.369860 TCTGCACCTCTGTCATCAACTT 59.630 45.455 0.00 0.00 0.00 2.66
1359 1961 1.973515 TCTGCACCTCTGTCATCAACT 59.026 47.619 0.00 0.00 0.00 3.16
1360 1962 2.344950 CTCTGCACCTCTGTCATCAAC 58.655 52.381 0.00 0.00 0.00 3.18
1361 1963 1.338484 GCTCTGCACCTCTGTCATCAA 60.338 52.381 0.00 0.00 0.00 2.57
1362 1964 0.248565 GCTCTGCACCTCTGTCATCA 59.751 55.000 0.00 0.00 0.00 3.07
1363 1965 0.536260 AGCTCTGCACCTCTGTCATC 59.464 55.000 0.00 0.00 0.00 2.92
1364 1966 0.536260 GAGCTCTGCACCTCTGTCAT 59.464 55.000 6.43 0.00 0.00 3.06
1365 1967 1.539560 GGAGCTCTGCACCTCTGTCA 61.540 60.000 14.64 0.00 36.40 3.58
1366 1968 1.217779 GGAGCTCTGCACCTCTGTC 59.782 63.158 14.64 0.00 36.40 3.51
1367 1969 2.289532 GGGAGCTCTGCACCTCTGT 61.290 63.158 14.64 0.00 39.22 3.41
1368 1970 1.988956 AGGGAGCTCTGCACCTCTG 60.989 63.158 14.64 0.00 39.22 3.35
1369 1971 1.988956 CAGGGAGCTCTGCACCTCT 60.989 63.158 14.64 0.00 39.22 3.69
1370 1972 2.583520 CAGGGAGCTCTGCACCTC 59.416 66.667 14.64 0.00 39.22 3.85
1376 1978 2.125065 CAGCTGCAGGGAGCTCTG 60.125 66.667 17.12 9.08 46.85 3.35
1377 1979 3.400928 CCAGCTGCAGGGAGCTCT 61.401 66.667 17.12 0.00 46.85 4.09
1384 1986 4.399395 TTCTCCGCCAGCTGCAGG 62.399 66.667 17.12 13.67 41.33 4.85
1385 1987 2.818714 CTTCTCCGCCAGCTGCAG 60.819 66.667 10.11 10.11 41.33 4.41
1386 1988 4.399395 CCTTCTCCGCCAGCTGCA 62.399 66.667 8.66 0.00 41.33 4.41
1387 1989 4.087892 TCCTTCTCCGCCAGCTGC 62.088 66.667 8.66 2.87 0.00 5.25
1388 1990 2.186384 CTCCTTCTCCGCCAGCTG 59.814 66.667 6.78 6.78 0.00 4.24
1389 1991 3.780173 GCTCCTTCTCCGCCAGCT 61.780 66.667 0.00 0.00 0.00 4.24
1390 1992 2.032860 TATGCTCCTTCTCCGCCAGC 62.033 60.000 0.00 0.00 0.00 4.85
1391 1993 0.033228 CTATGCTCCTTCTCCGCCAG 59.967 60.000 0.00 0.00 0.00 4.85
1392 1994 1.402896 CCTATGCTCCTTCTCCGCCA 61.403 60.000 0.00 0.00 0.00 5.69
1393 1995 1.115930 TCCTATGCTCCTTCTCCGCC 61.116 60.000 0.00 0.00 0.00 6.13
1394 1996 0.753262 TTCCTATGCTCCTTCTCCGC 59.247 55.000 0.00 0.00 0.00 5.54
1395 1997 2.311463 TCTTCCTATGCTCCTTCTCCG 58.689 52.381 0.00 0.00 0.00 4.63
1396 1998 3.645687 ACATCTTCCTATGCTCCTTCTCC 59.354 47.826 0.00 0.00 0.00 3.71
1397 1999 4.953940 ACATCTTCCTATGCTCCTTCTC 57.046 45.455 0.00 0.00 0.00 2.87
1398 2000 4.202202 CGAACATCTTCCTATGCTCCTTCT 60.202 45.833 0.00 0.00 0.00 2.85
1399 2001 4.054671 CGAACATCTTCCTATGCTCCTTC 58.945 47.826 0.00 0.00 0.00 3.46
1400 2002 3.706594 TCGAACATCTTCCTATGCTCCTT 59.293 43.478 0.00 0.00 0.00 3.36
1401 2003 3.300388 TCGAACATCTTCCTATGCTCCT 58.700 45.455 0.00 0.00 0.00 3.69
1402 2004 3.319405 TCTCGAACATCTTCCTATGCTCC 59.681 47.826 0.00 0.00 0.00 4.70
1403 2005 4.576216 TCTCGAACATCTTCCTATGCTC 57.424 45.455 0.00 0.00 0.00 4.26
1404 2006 4.646945 TCTTCTCGAACATCTTCCTATGCT 59.353 41.667 0.00 0.00 0.00 3.79
1405 2007 4.938080 TCTTCTCGAACATCTTCCTATGC 58.062 43.478 0.00 0.00 0.00 3.14
1421 2023 1.555741 GCATGCTCGGCGATCTTCTC 61.556 60.000 11.27 0.00 0.00 2.87
1422 2024 1.593750 GCATGCTCGGCGATCTTCT 60.594 57.895 11.27 0.00 0.00 2.85
1423 2025 1.593750 AGCATGCTCGGCGATCTTC 60.594 57.895 16.30 0.57 36.08 2.87
1424 2026 1.886313 CAGCATGCTCGGCGATCTT 60.886 57.895 19.68 0.70 36.08 2.40
1425 2027 2.279985 CAGCATGCTCGGCGATCT 60.280 61.111 19.68 0.00 36.08 2.75
1426 2028 2.279717 TCAGCATGCTCGGCGATC 60.280 61.111 19.68 7.00 34.76 3.69
1427 2029 2.279985 CTCAGCATGCTCGGCGAT 60.280 61.111 19.68 0.00 34.76 4.58
1428 2030 4.519437 CCTCAGCATGCTCGGCGA 62.519 66.667 19.68 10.14 34.76 5.54
2677 3284 7.800380 CCATAAGTTCTTGAATATTCGCATGTC 59.200 37.037 10.80 0.70 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.