Multiple sequence alignment - TraesCS7B01G145200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G145200 chr7B 100.000 6566 0 0 1 6566 188400258 188393693 0.000000e+00 12126.0
1 TraesCS7B01G145200 chr7B 91.018 334 25 5 2822 3150 331270914 331270581 5.060000e-121 446.0
2 TraesCS7B01G145200 chr7B 100.000 233 0 0 6875 7107 188393384 188393152 1.420000e-116 431.0
3 TraesCS7B01G145200 chr7D 96.086 2785 82 14 3783 6546 213512553 213515331 0.000000e+00 4514.0
4 TraesCS7B01G145200 chr7D 86.276 2237 131 55 716 2815 213509658 213511855 0.000000e+00 2268.0
5 TraesCS7B01G145200 chr7D 82.905 778 94 14 5345 6119 28684035 28684776 0.000000e+00 664.0
6 TraesCS7B01G145200 chr7D 91.124 338 20 6 3379 3708 213511851 213512186 3.910000e-122 449.0
7 TraesCS7B01G145200 chr7A 93.779 2845 113 21 3783 6565 225057679 225060521 0.000000e+00 4215.0
8 TraesCS7B01G145200 chr7A 85.143 1501 123 48 716 2156 225055054 225056514 0.000000e+00 1445.0
9 TraesCS7B01G145200 chr7A 89.517 601 28 7 2224 2815 225056637 225057211 0.000000e+00 728.0
10 TraesCS7B01G145200 chr7A 89.589 365 25 7 3379 3731 225057207 225057570 1.090000e-122 451.0
11 TraesCS7B01G145200 chr7A 89.053 338 37 0 5782 6119 29034762 29035099 3.070000e-113 420.0
12 TraesCS7B01G145200 chr7A 85.213 399 58 1 5349 5747 29034363 29034760 6.640000e-110 409.0
13 TraesCS7B01G145200 chr5A 86.765 2433 248 42 3785 6170 683131373 683133778 0.000000e+00 2641.0
14 TraesCS7B01G145200 chr5A 78.837 430 55 23 1016 1422 683129073 683129489 2.540000e-64 257.0
15 TraesCS7B01G145200 chr4D 92.483 1623 110 7 4555 6171 501169174 501167558 0.000000e+00 2311.0
16 TraesCS7B01G145200 chr4D 86.732 716 72 18 3785 4481 501170017 501169306 0.000000e+00 774.0
17 TraesCS7B01G145200 chr4D 92.149 242 19 0 3133 3374 351590506 351590265 6.830000e-90 342.0
18 TraesCS7B01G145200 chr4D 93.750 112 5 2 1322 1432 501178992 501178882 4.410000e-37 167.0
19 TraesCS7B01G145200 chr2A 98.584 706 10 0 1 706 744424853 744425558 0.000000e+00 1249.0
20 TraesCS7B01G145200 chr2A 90.763 249 23 0 3133 3381 184554643 184554891 4.110000e-87 333.0
21 TraesCS7B01G145200 chr6A 98.444 707 11 0 1 707 490315332 490314626 0.000000e+00 1245.0
22 TraesCS7B01G145200 chr4B 98.442 706 10 1 1 706 4581281 4581985 0.000000e+00 1242.0
23 TraesCS7B01G145200 chr4B 91.018 334 25 4 2813 3141 484676069 484675736 5.060000e-121 446.0
24 TraesCS7B01G145200 chr4A 98.025 709 14 0 1 709 697974622 697973914 0.000000e+00 1232.0
25 TraesCS7B01G145200 chr4A 85.385 780 112 2 5349 6127 702384092 702384870 0.000000e+00 808.0
26 TraesCS7B01G145200 chr4A 87.478 567 63 5 2813 3374 677310695 677311258 0.000000e+00 647.0
27 TraesCS7B01G145200 chr4A 84.571 525 63 4 5620 6127 702404218 702404741 8.230000e-139 505.0
28 TraesCS7B01G145200 chr4A 90.763 249 23 0 3133 3381 583440360 583440608 4.110000e-87 333.0
29 TraesCS7B01G145200 chr2B 98.014 705 14 0 1 705 7851359 7850655 0.000000e+00 1225.0
30 TraesCS7B01G145200 chr2B 96.605 707 24 0 1 707 798814500 798813794 0.000000e+00 1173.0
31 TraesCS7B01G145200 chr2B 91.867 332 22 5 2811 3138 666311258 666311588 6.500000e-125 459.0
32 TraesCS7B01G145200 chr2B 90.079 252 25 0 3135 3386 659019233 659018982 1.910000e-85 327.0
33 TraesCS7B01G145200 chr3A 98.009 703 14 0 1 703 714078307 714079009 0.000000e+00 1221.0
34 TraesCS7B01G145200 chrUn 96.747 707 23 0 1 707 47463347 47462641 0.000000e+00 1179.0
35 TraesCS7B01G145200 chrUn 95.286 297 12 2 2840 3134 78173662 78173366 3.000000e-128 470.0
36 TraesCS7B01G145200 chr3B 92.776 706 46 5 1 705 171094268 171094969 0.000000e+00 1016.0
37 TraesCS7B01G145200 chr6B 85.192 547 69 8 2845 3381 155554578 155555122 1.040000e-152 551.0
38 TraesCS7B01G145200 chr6B 91.843 331 25 2 2813 3141 202933994 202933664 1.810000e-125 460.0
39 TraesCS7B01G145200 chr6B 96.774 31 1 0 3924 3954 8790396 8790366 1.300000e-02 52.8
40 TraesCS7B01G145200 chr5B 91.667 324 24 3 2822 3142 571657076 571656753 5.060000e-121 446.0
41 TraesCS7B01G145200 chr5B 91.600 250 20 1 3133 3381 383025579 383025330 1.900000e-90 344.0
42 TraesCS7B01G145200 chr1B 91.358 324 25 3 2822 3142 622759142 622759465 2.350000e-119 440.0
43 TraesCS7B01G145200 chr2D 90.625 256 20 4 3133 3386 339196272 339196525 3.180000e-88 337.0
44 TraesCS7B01G145200 chr5D 90.157 254 24 1 3133 3386 70520175 70519923 5.310000e-86 329.0
45 TraesCS7B01G145200 chr5D 80.800 125 13 7 6984 7105 62516302 62516418 3.530000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G145200 chr7B 188393152 188400258 7106 True 6278.500000 12126 100.0000 1 7107 2 chr7B.!!$R2 7106
1 TraesCS7B01G145200 chr7D 213509658 213515331 5673 False 2410.333333 4514 91.1620 716 6546 3 chr7D.!!$F2 5830
2 TraesCS7B01G145200 chr7D 28684035 28684776 741 False 664.000000 664 82.9050 5345 6119 1 chr7D.!!$F1 774
3 TraesCS7B01G145200 chr7A 225055054 225060521 5467 False 1709.750000 4215 89.5070 716 6565 4 chr7A.!!$F2 5849
4 TraesCS7B01G145200 chr7A 29034363 29035099 736 False 414.500000 420 87.1330 5349 6119 2 chr7A.!!$F1 770
5 TraesCS7B01G145200 chr5A 683129073 683133778 4705 False 1449.000000 2641 82.8010 1016 6170 2 chr5A.!!$F1 5154
6 TraesCS7B01G145200 chr4D 501167558 501170017 2459 True 1542.500000 2311 89.6075 3785 6171 2 chr4D.!!$R3 2386
7 TraesCS7B01G145200 chr2A 744424853 744425558 705 False 1249.000000 1249 98.5840 1 706 1 chr2A.!!$F2 705
8 TraesCS7B01G145200 chr6A 490314626 490315332 706 True 1245.000000 1245 98.4440 1 707 1 chr6A.!!$R1 706
9 TraesCS7B01G145200 chr4B 4581281 4581985 704 False 1242.000000 1242 98.4420 1 706 1 chr4B.!!$F1 705
10 TraesCS7B01G145200 chr4A 697973914 697974622 708 True 1232.000000 1232 98.0250 1 709 1 chr4A.!!$R1 708
11 TraesCS7B01G145200 chr4A 702384092 702384870 778 False 808.000000 808 85.3850 5349 6127 1 chr4A.!!$F3 778
12 TraesCS7B01G145200 chr4A 677310695 677311258 563 False 647.000000 647 87.4780 2813 3374 1 chr4A.!!$F2 561
13 TraesCS7B01G145200 chr4A 702404218 702404741 523 False 505.000000 505 84.5710 5620 6127 1 chr4A.!!$F4 507
14 TraesCS7B01G145200 chr2B 7850655 7851359 704 True 1225.000000 1225 98.0140 1 705 1 chr2B.!!$R1 704
15 TraesCS7B01G145200 chr2B 798813794 798814500 706 True 1173.000000 1173 96.6050 1 707 1 chr2B.!!$R3 706
16 TraesCS7B01G145200 chr3A 714078307 714079009 702 False 1221.000000 1221 98.0090 1 703 1 chr3A.!!$F1 702
17 TraesCS7B01G145200 chrUn 47462641 47463347 706 True 1179.000000 1179 96.7470 1 707 1 chrUn.!!$R1 706
18 TraesCS7B01G145200 chr3B 171094268 171094969 701 False 1016.000000 1016 92.7760 1 705 1 chr3B.!!$F1 704
19 TraesCS7B01G145200 chr6B 155554578 155555122 544 False 551.000000 551 85.1920 2845 3381 1 chr6B.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 442 0.036388 GTTGGGAGATGGTTGCTCGA 60.036 55.0 0.00 0.00 33.19 4.04 F
943 979 0.110147 CCGGTAGATCGCACGAGATC 60.110 60.0 2.87 2.87 45.45 2.75 F
972 1008 0.544357 CCCCATCCGTAGCCATAGGA 60.544 60.0 0.00 0.00 38.56 2.94 F
973 1009 0.898320 CCCATCCGTAGCCATAGGAG 59.102 60.0 0.00 0.00 37.49 3.69 F
2796 3758 0.610687 GATCGGAGATTAGGCCCAGG 59.389 60.0 0.00 0.00 45.12 4.45 F
3674 4656 0.108186 GTGCACGTCCATGATCTCCA 60.108 55.0 0.00 0.00 0.00 3.86 F
4753 6209 0.549902 TCCTGGAGGCTCAAATGGGA 60.550 55.0 17.69 12.07 34.44 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1278 1363 0.390209 TAACCGTTGCTACCGCCTTC 60.390 55.0 0.00 0.0 34.43 3.46 R
2402 3353 0.541998 TCGTCTGCTTCTCCTTCCCA 60.542 55.0 0.00 0.0 0.00 4.37 R
2653 3610 1.217882 CTTGTTGGCGAAGAAGACGT 58.782 50.0 12.24 0.0 34.99 4.34 R
2955 3922 1.252904 GCATGCACACCCCACATCTT 61.253 55.0 14.21 0.0 0.00 2.40 R
4747 6203 0.322456 CCGTCATGGTGTGTCCCATT 60.322 55.0 0.00 0.0 42.70 3.16 R
5665 7126 0.250124 CACCAAAGTCGTACTGCCCA 60.250 55.0 0.00 0.0 0.00 5.36 R
6441 7964 0.248907 CGTCGCGAATCCATACACCT 60.249 55.0 12.06 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
441 442 0.036388 GTTGGGAGATGGTTGCTCGA 60.036 55.000 0.00 0.00 33.19 4.04
783 789 3.660669 ACCAGAAAAGGGGTAGGAAATCA 59.339 43.478 0.00 0.00 35.09 2.57
796 811 4.453480 AGGAAATCAGACAAAGGAACCA 57.547 40.909 0.00 0.00 0.00 3.67
809 824 0.664761 GGAACCATCGACCATGCATG 59.335 55.000 20.19 20.19 0.00 4.06
860 882 2.440796 CCCATGCCCAATCGCAGT 60.441 61.111 0.00 0.00 43.26 4.40
866 888 1.236616 TGCCCAATCGCAGTTCACAG 61.237 55.000 0.00 0.00 33.92 3.66
943 979 0.110147 CCGGTAGATCGCACGAGATC 60.110 60.000 2.87 2.87 45.45 2.75
956 992 3.148031 GAGATCGTACGCCCACCCC 62.148 68.421 11.24 0.00 0.00 4.95
957 993 3.463585 GATCGTACGCCCACCCCA 61.464 66.667 11.24 0.00 0.00 4.96
958 994 2.766651 ATCGTACGCCCACCCCAT 60.767 61.111 11.24 0.00 0.00 4.00
959 995 2.710724 GATCGTACGCCCACCCCATC 62.711 65.000 11.24 1.85 0.00 3.51
960 996 4.540735 CGTACGCCCACCCCATCC 62.541 72.222 0.52 0.00 0.00 3.51
972 1008 0.544357 CCCCATCCGTAGCCATAGGA 60.544 60.000 0.00 0.00 38.56 2.94
973 1009 0.898320 CCCATCCGTAGCCATAGGAG 59.102 60.000 0.00 0.00 37.49 3.69
974 1010 0.898320 CCATCCGTAGCCATAGGAGG 59.102 60.000 0.00 0.00 37.49 4.30
985 1028 1.613836 CATAGGAGGCCCATTGCTTC 58.386 55.000 0.00 0.00 44.92 3.86
1078 1132 3.551407 GTCGCATCCTCCCCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
1089 1149 3.700350 CCCTCCCCCTCCTCCACT 61.700 72.222 0.00 0.00 0.00 4.00
1435 1520 7.543868 ACGCCAGTAAGTATACTAGTACTATCG 59.456 40.741 21.33 21.33 40.44 2.92
1448 1538 8.522178 ACTAGTACTATCGTACCGTATAACAC 57.478 38.462 2.33 0.00 45.68 3.32
1462 1552 4.024641 CGTATAACACTGACATGCATGCAT 60.025 41.667 27.46 27.46 37.08 3.96
1545 1643 7.047271 AGTTTATTGTGGTGAAAAATGCAACT 58.953 30.769 0.00 0.00 0.00 3.16
1575 1673 6.986231 CCATTTTGTAGCCCAAATTAAGATCC 59.014 38.462 0.49 0.00 42.45 3.36
1576 1674 5.828299 TTTGTAGCCCAAATTAAGATCCG 57.172 39.130 0.00 0.00 38.12 4.18
1578 1676 4.448210 TGTAGCCCAAATTAAGATCCGAC 58.552 43.478 0.00 0.00 0.00 4.79
1579 1677 3.933861 AGCCCAAATTAAGATCCGACT 57.066 42.857 0.00 0.00 0.00 4.18
1615 1718 4.876107 CGAAGGCATTAAGAGTAACACCAT 59.124 41.667 0.00 0.00 0.00 3.55
1618 1721 7.254455 CGAAGGCATTAAGAGTAACACCATAAG 60.254 40.741 0.00 0.00 0.00 1.73
1631 1734 8.919145 AGTAACACCATAAGGAAAAATCAAACA 58.081 29.630 0.00 0.00 38.69 2.83
1690 1793 8.192774 ACGGTAGTAGAATTAATTGATCAACGA 58.807 33.333 11.07 0.00 0.00 3.85
1696 1799 9.749490 GTAGAATTAATTGATCAACGAACGAAA 57.251 29.630 11.07 0.00 0.00 3.46
1793 2008 7.444629 ACAAAAATCATCCATCGATCATAGG 57.555 36.000 0.00 0.00 0.00 2.57
1874 2099 6.183360 TGGTTCGACTAGTTTTCACACTTTTC 60.183 38.462 0.00 0.00 0.00 2.29
1952 2229 0.950555 TACAGCAACTTGAGCGGCAG 60.951 55.000 1.45 0.00 37.01 4.85
1993 2320 6.287589 AGTGACCAGTCCTAATTGAGTTAG 57.712 41.667 0.00 0.00 39.63 2.34
2005 2332 8.780249 TCCTAATTGAGTTAGCAAAACAAGTAC 58.220 33.333 4.96 0.00 38.78 2.73
2007 2334 9.813080 CTAATTGAGTTAGCAAAACAAGTACTC 57.187 33.333 0.00 0.00 33.88 2.59
2010 2337 7.941795 TGAGTTAGCAAAACAAGTACTCTAC 57.058 36.000 0.00 0.00 33.50 2.59
2068 2395 1.398390 GTGTTAGCTGCCCTCAATTCG 59.602 52.381 0.00 0.00 0.00 3.34
2095 2428 3.733684 GCAAAACGTCAGAAGCTGGAAAA 60.734 43.478 0.00 0.00 31.51 2.29
2141 2868 3.292460 ACTTGTCCCTCCTCTTATCTCG 58.708 50.000 0.00 0.00 0.00 4.04
2156 2883 8.202137 CCTCTTATCTCGGTAGGAATTTTTGTA 58.798 37.037 0.00 0.00 0.00 2.41
2164 2907 5.708697 CGGTAGGAATTTTTGTAAAGGACCT 59.291 40.000 0.00 0.00 32.66 3.85
2170 2913 7.290014 AGGAATTTTTGTAAAGGACCTTCATGT 59.710 33.333 7.34 0.00 0.00 3.21
2204 3145 7.163001 TCCTGACTAATATCGATCCATTCTG 57.837 40.000 0.00 0.00 0.00 3.02
2205 3146 6.948309 TCCTGACTAATATCGATCCATTCTGA 59.052 38.462 0.00 0.00 0.00 3.27
2206 3147 7.451566 TCCTGACTAATATCGATCCATTCTGAA 59.548 37.037 0.00 0.00 0.00 3.02
2208 3149 7.378966 TGACTAATATCGATCCATTCTGAACC 58.621 38.462 0.00 0.00 0.00 3.62
2209 3150 7.015195 TGACTAATATCGATCCATTCTGAACCA 59.985 37.037 0.00 0.00 0.00 3.67
2212 3153 7.678947 AATATCGATCCATTCTGAACCATTC 57.321 36.000 0.00 0.00 0.00 2.67
2213 3154 4.486125 TCGATCCATTCTGAACCATTCA 57.514 40.909 0.00 0.00 38.17 2.57
2216 3157 5.709631 TCGATCCATTCTGAACCATTCAAAA 59.290 36.000 0.00 0.00 39.58 2.44
2217 3158 6.208402 TCGATCCATTCTGAACCATTCAAAAA 59.792 34.615 0.00 0.00 39.58 1.94
2239 3190 7.614124 AAAAGAAAACTTGTTTGATGCATGT 57.386 28.000 2.46 0.00 0.00 3.21
2252 3203 4.193865 TGATGCATGTTCATCACCTAGTG 58.806 43.478 2.46 0.00 45.50 2.74
2253 3204 2.989909 TGCATGTTCATCACCTAGTGG 58.010 47.619 0.00 0.00 39.83 4.00
2254 3205 2.571202 TGCATGTTCATCACCTAGTGGA 59.429 45.455 0.00 0.00 37.04 4.02
2255 3206 3.201290 GCATGTTCATCACCTAGTGGAG 58.799 50.000 0.00 0.00 37.04 3.86
2265 3216 4.270834 TCACCTAGTGGAGTACATCTGAC 58.729 47.826 0.00 0.00 37.04 3.51
2268 3219 4.018324 ACCTAGTGGAGTACATCTGACTGA 60.018 45.833 0.00 0.00 37.04 3.41
2276 3227 7.389053 GTGGAGTACATCTGACTGAGAAAATTT 59.611 37.037 0.00 0.00 33.12 1.82
2285 3236 7.865707 TCTGACTGAGAAAATTTAAACTCTGC 58.134 34.615 17.71 13.71 33.71 4.26
2300 3251 3.261580 ACTCTGCAAAAACAAAACTGGC 58.738 40.909 0.00 0.00 0.00 4.85
2307 3258 1.341913 AAACAAAACTGGCCACCCCC 61.342 55.000 0.00 0.00 0.00 5.40
2347 3298 2.880268 CAAGTTCAGCTGTGTCATGGAA 59.120 45.455 14.67 0.00 0.00 3.53
2359 3310 4.877823 TGTGTCATGGAATACTGCTTGATC 59.122 41.667 0.00 0.00 31.24 2.92
2395 3346 3.076621 CTGTATGTGCACACCTGAATGT 58.923 45.455 24.37 6.07 0.00 2.71
2402 3353 2.899900 TGCACACCTGAATGTAGAGACT 59.100 45.455 0.00 0.00 0.00 3.24
2621 3578 2.492090 GTCATCCGCTGCGACTCT 59.508 61.111 25.45 1.50 0.00 3.24
2718 3680 1.555075 CCTTTCATCGGGAAGGTCTCA 59.445 52.381 0.00 0.00 36.72 3.27
2722 3684 2.466846 TCATCGGGAAGGTCTCATCAA 58.533 47.619 0.00 0.00 0.00 2.57
2748 3710 1.514228 GCGAACGCGATCTCTGTGA 60.514 57.895 15.93 0.00 40.82 3.58
2796 3758 0.610687 GATCGGAGATTAGGCCCAGG 59.389 60.000 0.00 0.00 45.12 4.45
2824 3786 7.171678 GCTGTAGTTTAATTAGGCTGGTCATAG 59.828 40.741 0.00 0.00 0.00 2.23
2835 3797 2.766828 GCTGGTCATAGTGGGAGTAACT 59.233 50.000 0.00 0.00 0.00 2.24
2838 3800 5.452077 GCTGGTCATAGTGGGAGTAACTTAG 60.452 48.000 0.00 0.00 0.00 2.18
2842 3804 6.781507 GGTCATAGTGGGAGTAACTTAGGTAT 59.218 42.308 0.00 0.00 0.00 2.73
2844 3806 8.358895 GTCATAGTGGGAGTAACTTAGGTATTC 58.641 40.741 0.00 0.00 0.00 1.75
2847 3809 6.269974 AGTGGGAGTAACTTAGGTATTCCTT 58.730 40.000 16.63 2.94 42.12 3.36
2850 3812 5.664457 GGGAGTAACTTAGGTATTCCTTCCA 59.336 44.000 16.63 0.00 42.12 3.53
2892 3858 9.289303 CATCTTACGAAAACCAAATAATCCAAG 57.711 33.333 0.00 0.00 0.00 3.61
2903 3869 6.719370 ACCAAATAATCCAAGACACTTAAGCA 59.281 34.615 1.29 0.00 0.00 3.91
2904 3870 7.397192 ACCAAATAATCCAAGACACTTAAGCAT 59.603 33.333 1.29 0.00 0.00 3.79
2924 3890 5.523369 GCATGGTGCATTAAATTCTACCTC 58.477 41.667 0.00 0.00 44.26 3.85
3130 4097 3.458857 ACTTACTCATCTAGACGGAGGGA 59.541 47.826 21.20 10.41 32.98 4.20
3131 4098 4.079901 ACTTACTCATCTAGACGGAGGGAA 60.080 45.833 21.20 15.25 32.98 3.97
3167 4142 8.950210 AGATGTCACATAAGTAAAAATGGTGAG 58.050 33.333 0.00 0.00 0.00 3.51
3185 4160 3.127030 GTGAGGTGGCAAGTAGTTAATGC 59.873 47.826 0.00 0.00 39.33 3.56
3207 4182 4.262249 GCGGAGAGAGGCAAATAGAGTAAT 60.262 45.833 0.00 0.00 0.00 1.89
3231 4206 9.791801 AATATAATATGTTACCATCACACAGCA 57.208 29.630 0.00 0.00 32.29 4.41
3305 4280 7.733047 TGTTACTCCATATATGACACTACCCAT 59.267 37.037 14.54 0.00 0.00 4.00
3309 4284 8.762645 ACTCCATATATGACACTACCCATTATG 58.237 37.037 14.54 0.00 0.00 1.90
3311 4286 9.332713 TCCATATATGACACTACCCATTATGAA 57.667 33.333 14.54 0.00 0.00 2.57
3326 4301 8.648693 ACCCATTATGAAGGTAGTAACATAGAC 58.351 37.037 0.00 0.00 30.13 2.59
3337 4312 9.352191 AGGTAGTAACATAGACTAGTAACATGG 57.648 37.037 0.00 0.00 30.08 3.66
3374 4349 6.016108 GTCTATGTTACTCTCCACTATGACCC 60.016 46.154 0.00 0.00 0.00 4.46
3375 4350 4.055710 TGTTACTCTCCACTATGACCCA 57.944 45.455 0.00 0.00 0.00 4.51
3381 4356 4.030913 CTCTCCACTATGACCCACCTTAA 58.969 47.826 0.00 0.00 0.00 1.85
3382 4357 4.030913 TCTCCACTATGACCCACCTTAAG 58.969 47.826 0.00 0.00 0.00 1.85
3404 4379 4.518249 GGCTTTAGGCTATATGACCATCC 58.482 47.826 0.00 0.00 41.46 3.51
3433 4408 5.163343 ACTGTGCGTGGAACCATAAGTATAT 60.163 40.000 0.00 0.00 0.00 0.86
3434 4409 5.053811 TGTGCGTGGAACCATAAGTATATG 58.946 41.667 0.00 0.00 38.93 1.78
3436 4411 5.176958 GTGCGTGGAACCATAAGTATATGAC 59.823 44.000 0.00 0.00 41.25 3.06
3437 4412 4.689345 GCGTGGAACCATAAGTATATGACC 59.311 45.833 0.00 0.00 41.25 4.02
3438 4413 5.740803 GCGTGGAACCATAAGTATATGACCA 60.741 44.000 0.00 0.00 41.25 4.02
3440 4415 6.590292 CGTGGAACCATAAGTATATGACCATC 59.410 42.308 0.00 0.00 41.25 3.51
3442 4417 6.106673 GGAACCATAAGTATATGACCATCGG 58.893 44.000 0.00 0.00 41.25 4.18
3443 4418 5.677319 ACCATAAGTATATGACCATCGGG 57.323 43.478 0.00 0.00 41.25 5.14
3444 4419 5.338632 ACCATAAGTATATGACCATCGGGA 58.661 41.667 0.00 0.00 41.25 5.14
3445 4420 5.783360 ACCATAAGTATATGACCATCGGGAA 59.217 40.000 0.00 0.00 41.25 3.97
3447 4422 4.891992 AAGTATATGACCATCGGGAAGG 57.108 45.455 0.00 0.00 38.05 3.46
3448 4423 3.858135 AGTATATGACCATCGGGAAGGT 58.142 45.455 0.00 0.00 41.83 3.50
3451 4426 3.721868 GACCATCGGGAAGGTCCA 58.278 61.111 11.12 0.00 46.79 4.02
3546 4525 0.811915 GACAGGCAGTCGAGAGCTAA 59.188 55.000 8.70 0.00 37.53 3.09
3554 4533 2.425312 CAGTCGAGAGCTAATGGTGTCT 59.575 50.000 0.00 0.00 32.66 3.41
3674 4656 0.108186 GTGCACGTCCATGATCTCCA 60.108 55.000 0.00 0.00 0.00 3.86
3715 4702 2.877582 CCGCCCGTACGAGTTTCG 60.878 66.667 18.76 11.55 46.93 3.46
3722 4709 1.668253 CGTACGAGTTTCGAACCCGC 61.668 60.000 10.44 0.00 43.74 6.13
3726 4713 4.955774 AGTTTCGAACCCGCGCGT 62.956 61.111 29.95 10.71 35.37 6.01
3748 4746 3.681835 GCCTGCAGCTTGCTTGCT 61.682 61.111 8.66 0.00 45.31 3.91
3749 4747 2.338015 GCCTGCAGCTTGCTTGCTA 61.338 57.895 8.66 0.00 45.31 3.49
3751 4749 0.959372 CCTGCAGCTTGCTTGCTAGT 60.959 55.000 8.66 0.00 45.31 2.57
3753 4751 1.664659 CTGCAGCTTGCTTGCTAGTAG 59.335 52.381 0.00 0.00 45.31 2.57
3754 4752 1.002430 TGCAGCTTGCTTGCTAGTAGT 59.998 47.619 14.43 0.00 45.31 2.73
3755 4753 2.233676 TGCAGCTTGCTTGCTAGTAGTA 59.766 45.455 14.43 0.00 45.31 1.82
3756 4754 2.863137 GCAGCTTGCTTGCTAGTAGTAG 59.137 50.000 0.00 0.00 41.98 2.57
3757 4755 3.677424 GCAGCTTGCTTGCTAGTAGTAGT 60.677 47.826 6.47 0.00 41.98 2.73
3760 4758 6.276847 CAGCTTGCTTGCTAGTAGTAGTAAT 58.723 40.000 8.36 0.00 41.98 1.89
3763 4761 6.757010 GCTTGCTTGCTAGTAGTAGTAATGAA 59.243 38.462 8.36 4.53 31.29 2.57
3767 4765 8.474831 TGCTTGCTAGTAGTAGTAATGAAATGA 58.525 33.333 8.36 0.00 31.29 2.57
3768 4766 8.756864 GCTTGCTAGTAGTAGTAATGAAATGAC 58.243 37.037 8.36 0.00 31.29 3.06
3771 4769 9.750125 TGCTAGTAGTAGTAATGAAATGACATG 57.250 33.333 6.47 0.00 0.00 3.21
3772 4770 9.197694 GCTAGTAGTAGTAATGAAATGACATGG 57.802 37.037 6.47 0.00 0.00 3.66
3775 4773 9.959721 AGTAGTAGTAATGAAATGACATGGTTT 57.040 29.630 0.00 0.00 0.00 3.27
3778 4776 9.959721 AGTAGTAATGAAATGACATGGTTTACT 57.040 29.630 0.00 13.43 30.45 2.24
3781 4779 8.950210 AGTAATGAAATGACATGGTTTACTCTG 58.050 33.333 0.00 0.00 0.00 3.35
4094 5430 5.800941 CCACAAAGTCAAGAGATACTACGTC 59.199 44.000 0.00 0.00 0.00 4.34
4098 5441 3.622163 AGTCAAGAGATACTACGTCCACG 59.378 47.826 0.00 0.00 46.33 4.94
4349 5723 2.567049 CTCTTCGAGGACGGCGTT 59.433 61.111 16.19 0.00 40.21 4.84
4483 5860 5.479124 AATGTCCAAAGTACGTTCCTACT 57.521 39.130 0.00 0.00 0.00 2.57
4484 5861 4.510038 TGTCCAAAGTACGTTCCTACTC 57.490 45.455 0.00 0.00 0.00 2.59
4486 5863 3.256631 GTCCAAAGTACGTTCCTACTCCA 59.743 47.826 0.00 0.00 0.00 3.86
4488 5865 4.081862 TCCAAAGTACGTTCCTACTCCATG 60.082 45.833 0.00 0.00 0.00 3.66
4494 5873 4.618920 ACGTTCCTACTCCATGTTTCTT 57.381 40.909 0.00 0.00 0.00 2.52
4495 5874 4.566987 ACGTTCCTACTCCATGTTTCTTC 58.433 43.478 0.00 0.00 0.00 2.87
4511 5890 2.176045 TCTTCCTTCCAGATGCACGTA 58.824 47.619 0.00 0.00 0.00 3.57
4523 5908 3.700577 GCACGTACATGCAGCAAAT 57.299 47.368 9.42 0.00 45.39 2.32
4541 5926 5.870978 AGCAAATATGGAGTTTTTCATGCAC 59.129 36.000 0.00 0.00 0.00 4.57
4542 5927 5.063817 GCAAATATGGAGTTTTTCATGCACC 59.936 40.000 0.00 0.00 0.00 5.01
4543 5928 5.999205 AATATGGAGTTTTTCATGCACCA 57.001 34.783 0.00 0.00 0.00 4.17
4544 5929 5.999205 ATATGGAGTTTTTCATGCACCAA 57.001 34.783 0.00 0.00 0.00 3.67
4545 5930 3.451141 TGGAGTTTTTCATGCACCAAC 57.549 42.857 0.00 0.00 0.00 3.77
4547 5932 2.365293 GGAGTTTTTCATGCACCAACCT 59.635 45.455 0.00 0.00 0.00 3.50
4550 5935 5.452636 GGAGTTTTTCATGCACCAACCTAAA 60.453 40.000 0.00 0.00 0.00 1.85
4639 6095 3.792053 GACGCTCGCCGGGATCAAT 62.792 63.158 2.18 0.00 42.52 2.57
4753 6209 0.549902 TCCTGGAGGCTCAAATGGGA 60.550 55.000 17.69 12.07 34.44 4.37
4873 6329 2.817834 CGCACCACCATGTACGGG 60.818 66.667 2.04 2.04 0.00 5.28
4981 6437 1.961277 GTGGAGGCAGGTGTTCACG 60.961 63.158 0.00 0.00 0.00 4.35
5005 6461 1.954146 CACGGACACCACCAAGTCG 60.954 63.158 0.00 0.00 35.63 4.18
5119 6575 3.536917 CCCTACATCCTCGCGGCA 61.537 66.667 6.13 0.00 0.00 5.69
5464 6920 2.676265 GGGGTGGGTTCAGGCGTAT 61.676 63.158 0.00 0.00 0.00 3.06
5665 7126 2.609759 CCACGCGGCGGTAAACTTT 61.610 57.895 27.37 0.00 0.00 2.66
5683 7144 0.470766 TTGGGCAGTACGACTTTGGT 59.529 50.000 0.00 0.00 0.00 3.67
5704 7165 2.284112 TACTTCCCGAACCGCCCT 60.284 61.111 0.00 0.00 0.00 5.19
6165 7676 5.724328 TCTAGCAGACTTGTTGTCCATTAG 58.276 41.667 0.00 0.00 46.46 1.73
6302 7825 7.074653 ACAACTTTGGTACTCTCTCCATTTA 57.925 36.000 0.00 0.00 33.50 1.40
6368 7891 1.901833 GCCACAAATGATTGTCCCCTT 59.098 47.619 0.00 0.00 46.78 3.95
6371 7894 3.194116 CCACAAATGATTGTCCCCTTCAG 59.806 47.826 0.00 0.00 46.78 3.02
6441 7964 2.507452 CCTGCGGCAGATCATGGA 59.493 61.111 30.52 0.00 32.44 3.41
6458 7981 0.387929 GGAGGTGTATGGATTCGCGA 59.612 55.000 3.71 3.71 0.00 5.87
6502 8025 5.105756 GGGTCTCATTTCCACTATGTTTTGG 60.106 44.000 0.00 0.00 0.00 3.28
6565 8091 6.303054 CCCCCACAAAAAGGAATTATTTGTT 58.697 36.000 0.72 0.00 42.82 2.83
6933 8459 7.781548 AGACAAAATAAAACAGTGTACGAGT 57.218 32.000 0.00 0.00 0.00 4.18
6934 8460 8.876275 AGACAAAATAAAACAGTGTACGAGTA 57.124 30.769 0.00 0.00 0.00 2.59
6935 8461 8.758715 AGACAAAATAAAACAGTGTACGAGTAC 58.241 33.333 0.00 6.46 36.63 2.73
6936 8462 8.652810 ACAAAATAAAACAGTGTACGAGTACT 57.347 30.769 13.67 0.00 37.00 2.73
6938 8464 8.757789 CAAAATAAAACAGTGTACGAGTACTGA 58.242 33.333 15.74 0.00 45.46 3.41
6939 8465 8.876275 AAATAAAACAGTGTACGAGTACTGAA 57.124 30.769 15.74 2.01 45.46 3.02
6940 8466 7.864307 ATAAAACAGTGTACGAGTACTGAAC 57.136 36.000 15.74 4.95 45.46 3.18
6941 8467 4.906065 AACAGTGTACGAGTACTGAACA 57.094 40.909 15.74 0.00 45.46 3.18
6942 8468 5.449107 AACAGTGTACGAGTACTGAACAT 57.551 39.130 15.74 0.04 45.46 2.71
6943 8469 6.564709 AACAGTGTACGAGTACTGAACATA 57.435 37.500 15.74 0.00 45.46 2.29
6944 8470 6.564709 ACAGTGTACGAGTACTGAACATAA 57.435 37.500 15.74 0.00 45.46 1.90
6945 8471 6.973843 ACAGTGTACGAGTACTGAACATAAA 58.026 36.000 15.74 0.00 45.46 1.40
6946 8472 7.428020 ACAGTGTACGAGTACTGAACATAAAA 58.572 34.615 15.74 0.00 45.46 1.52
6947 8473 7.594015 ACAGTGTACGAGTACTGAACATAAAAG 59.406 37.037 15.74 0.00 45.46 2.27
6948 8474 7.594015 CAGTGTACGAGTACTGAACATAAAAGT 59.406 37.037 0.00 0.00 45.46 2.66
6949 8475 8.786898 AGTGTACGAGTACTGAACATAAAAGTA 58.213 33.333 0.00 0.00 37.00 2.24
6950 8476 9.398170 GTGTACGAGTACTGAACATAAAAGTAA 57.602 33.333 0.00 0.00 37.00 2.24
6951 8477 9.398170 TGTACGAGTACTGAACATAAAAGTAAC 57.602 33.333 0.00 0.00 37.00 2.50
6952 8478 9.398170 GTACGAGTACTGAACATAAAAGTAACA 57.602 33.333 0.00 0.00 33.45 2.41
6954 8480 9.485206 ACGAGTACTGAACATAAAAGTAACATT 57.515 29.630 0.00 0.00 0.00 2.71
6960 8486 9.463443 ACTGAACATAAAAGTAACATTTTGCTC 57.537 29.630 0.00 0.00 34.35 4.26
6961 8487 9.683069 CTGAACATAAAAGTAACATTTTGCTCT 57.317 29.630 0.00 0.00 34.35 4.09
6962 8488 9.677567 TGAACATAAAAGTAACATTTTGCTCTC 57.322 29.630 0.00 0.00 34.35 3.20
6963 8489 9.899226 GAACATAAAAGTAACATTTTGCTCTCT 57.101 29.630 0.00 0.00 34.35 3.10
6965 8491 9.683069 ACATAAAAGTAACATTTTGCTCTCTTG 57.317 29.630 0.00 0.00 34.35 3.02
6966 8492 9.897744 CATAAAAGTAACATTTTGCTCTCTTGA 57.102 29.630 0.00 0.00 34.35 3.02
6968 8494 7.807977 AAAGTAACATTTTGCTCTCTTGAGA 57.192 32.000 0.13 0.13 42.73 3.27
6969 8495 7.432350 AAGTAACATTTTGCTCTCTTGAGAG 57.568 36.000 19.99 19.99 42.73 3.20
6977 8503 2.442236 CTCTCTTGAGAGCTCCTCCT 57.558 55.000 10.93 0.00 42.73 3.69
6978 8504 2.026641 CTCTCTTGAGAGCTCCTCCTG 58.973 57.143 10.93 3.67 42.73 3.86
6979 8505 1.638070 TCTCTTGAGAGCTCCTCCTGA 59.362 52.381 10.93 7.38 41.25 3.86
6980 8506 2.042297 TCTCTTGAGAGCTCCTCCTGAA 59.958 50.000 10.93 0.00 41.25 3.02
6981 8507 2.830923 CTCTTGAGAGCTCCTCCTGAAA 59.169 50.000 10.93 0.00 41.25 2.69
6982 8508 3.242867 TCTTGAGAGCTCCTCCTGAAAA 58.757 45.455 10.93 0.00 41.25 2.29
6983 8509 3.648067 TCTTGAGAGCTCCTCCTGAAAAA 59.352 43.478 10.93 0.00 41.25 1.94
6997 8523 3.681473 AAAAACCTAGCCGCTGCC 58.319 55.556 2.16 0.00 38.69 4.85
6998 8524 1.228429 AAAAACCTAGCCGCTGCCA 60.228 52.632 2.16 0.00 38.69 4.92
6999 8525 0.611896 AAAAACCTAGCCGCTGCCAT 60.612 50.000 2.16 0.00 38.69 4.40
7000 8526 1.032114 AAAACCTAGCCGCTGCCATC 61.032 55.000 2.16 0.00 38.69 3.51
7001 8527 2.196997 AAACCTAGCCGCTGCCATCA 62.197 55.000 2.16 0.00 38.69 3.07
7002 8528 1.987807 AACCTAGCCGCTGCCATCAT 61.988 55.000 2.16 0.00 38.69 2.45
7003 8529 1.121407 ACCTAGCCGCTGCCATCATA 61.121 55.000 2.16 0.00 38.69 2.15
7004 8530 0.390866 CCTAGCCGCTGCCATCATAG 60.391 60.000 2.16 0.00 38.69 2.23
7005 8531 0.605083 CTAGCCGCTGCCATCATAGA 59.395 55.000 2.16 0.00 38.69 1.98
7006 8532 1.206610 CTAGCCGCTGCCATCATAGAT 59.793 52.381 2.16 0.00 38.69 1.98
7007 8533 0.036577 AGCCGCTGCCATCATAGATC 60.037 55.000 0.00 0.00 38.69 2.75
7008 8534 1.357258 GCCGCTGCCATCATAGATCG 61.357 60.000 0.00 0.00 0.00 3.69
7009 8535 0.738762 CCGCTGCCATCATAGATCGG 60.739 60.000 0.00 0.00 0.00 4.18
7010 8536 0.037882 CGCTGCCATCATAGATCGGT 60.038 55.000 0.00 0.00 0.00 4.69
7011 8537 1.606480 CGCTGCCATCATAGATCGGTT 60.606 52.381 0.00 0.00 0.00 4.44
7012 8538 2.072298 GCTGCCATCATAGATCGGTTC 58.928 52.381 0.00 0.00 0.00 3.62
7013 8539 2.693069 CTGCCATCATAGATCGGTTCC 58.307 52.381 0.00 0.00 0.00 3.62
7014 8540 1.347707 TGCCATCATAGATCGGTTCCC 59.652 52.381 0.00 0.00 0.00 3.97
7015 8541 1.339151 GCCATCATAGATCGGTTCCCC 60.339 57.143 0.00 0.00 0.00 4.81
7016 8542 2.260822 CCATCATAGATCGGTTCCCCT 58.739 52.381 0.00 0.00 0.00 4.79
7017 8543 2.234908 CCATCATAGATCGGTTCCCCTC 59.765 54.545 0.00 0.00 0.00 4.30
7018 8544 2.011122 TCATAGATCGGTTCCCCTCC 57.989 55.000 0.00 0.00 0.00 4.30
7019 8545 1.503784 TCATAGATCGGTTCCCCTCCT 59.496 52.381 0.00 0.00 0.00 3.69
7020 8546 1.896465 CATAGATCGGTTCCCCTCCTC 59.104 57.143 0.00 0.00 0.00 3.71
7021 8547 1.232909 TAGATCGGTTCCCCTCCTCT 58.767 55.000 0.00 0.00 0.00 3.69
7022 8548 0.397816 AGATCGGTTCCCCTCCTCTG 60.398 60.000 0.00 0.00 0.00 3.35
7023 8549 1.383248 ATCGGTTCCCCTCCTCTGG 60.383 63.158 0.00 0.00 0.00 3.86
7024 8550 3.787001 CGGTTCCCCTCCTCTGGC 61.787 72.222 0.00 0.00 0.00 4.85
7025 8551 2.285743 GGTTCCCCTCCTCTGGCT 60.286 66.667 0.00 0.00 0.00 4.75
7026 8552 2.674220 GGTTCCCCTCCTCTGGCTG 61.674 68.421 0.00 0.00 0.00 4.85
7027 8553 2.285668 TTCCCCTCCTCTGGCTGG 60.286 66.667 0.00 0.00 0.00 4.85
7051 8577 3.760035 CGGTGTCGGGAGGAGTGG 61.760 72.222 0.00 0.00 0.00 4.00
7052 8578 3.391382 GGTGTCGGGAGGAGTGGG 61.391 72.222 0.00 0.00 0.00 4.61
7053 8579 3.391382 GTGTCGGGAGGAGTGGGG 61.391 72.222 0.00 0.00 0.00 4.96
7054 8580 3.596799 TGTCGGGAGGAGTGGGGA 61.597 66.667 0.00 0.00 0.00 4.81
7055 8581 2.284405 GTCGGGAGGAGTGGGGAA 60.284 66.667 0.00 0.00 0.00 3.97
7056 8582 2.284405 TCGGGAGGAGTGGGGAAC 60.284 66.667 0.00 0.00 0.00 3.62
7074 8600 5.104259 GGAACCCAATCTATGAGTGAAGT 57.896 43.478 0.00 0.00 28.30 3.01
7075 8601 5.501156 GGAACCCAATCTATGAGTGAAGTT 58.499 41.667 0.00 0.95 30.97 2.66
7076 8602 5.586643 GGAACCCAATCTATGAGTGAAGTTC 59.413 44.000 15.53 15.53 38.57 3.01
7077 8603 6.380079 AACCCAATCTATGAGTGAAGTTCT 57.620 37.500 4.17 0.00 28.30 3.01
7078 8604 6.380079 ACCCAATCTATGAGTGAAGTTCTT 57.620 37.500 4.17 0.00 28.30 2.52
7079 8605 6.410540 ACCCAATCTATGAGTGAAGTTCTTC 58.589 40.000 4.17 5.70 28.30 2.87
7080 8606 6.013379 ACCCAATCTATGAGTGAAGTTCTTCA 60.013 38.462 10.67 10.67 28.30 3.02
7081 8607 7.052873 CCCAATCTATGAGTGAAGTTCTTCAT 58.947 38.462 20.01 20.01 33.02 2.57
7082 8608 8.206867 CCCAATCTATGAGTGAAGTTCTTCATA 58.793 37.037 16.55 20.07 33.02 2.15
7083 8609 9.605275 CCAATCTATGAGTGAAGTTCTTCATAA 57.395 33.333 20.91 15.57 33.02 1.90
7090 8616 9.950496 ATGAGTGAAGTTCTTCATAACAATAGT 57.050 29.630 16.55 0.00 33.02 2.12
7091 8617 9.208022 TGAGTGAAGTTCTTCATAACAATAGTG 57.792 33.333 16.55 0.00 33.02 2.74
7092 8618 9.209175 GAGTGAAGTTCTTCATAACAATAGTGT 57.791 33.333 16.55 0.00 34.58 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
193 194 7.123355 TCCCATTAAGCCAATTTCCAAATAG 57.877 36.000 0.00 0.00 0.00 1.73
441 442 4.837093 TCCAAACCGGTTGAAGATATCT 57.163 40.909 23.08 0.00 39.87 1.98
709 711 7.361885 GGTCGTGGATATATGTTACTACCTCTG 60.362 44.444 0.00 0.00 0.00 3.35
710 712 6.658391 GGTCGTGGATATATGTTACTACCTCT 59.342 42.308 0.00 0.00 0.00 3.69
711 713 6.658391 AGGTCGTGGATATATGTTACTACCTC 59.342 42.308 9.33 0.00 33.70 3.85
712 714 6.433404 CAGGTCGTGGATATATGTTACTACCT 59.567 42.308 9.33 9.33 37.77 3.08
713 715 6.618811 CAGGTCGTGGATATATGTTACTACC 58.381 44.000 0.00 0.00 0.00 3.18
714 716 6.091437 GCAGGTCGTGGATATATGTTACTAC 58.909 44.000 0.00 0.00 0.00 2.73
715 717 5.771165 TGCAGGTCGTGGATATATGTTACTA 59.229 40.000 0.00 0.00 0.00 1.82
716 718 4.587262 TGCAGGTCGTGGATATATGTTACT 59.413 41.667 0.00 0.00 0.00 2.24
717 719 4.684703 GTGCAGGTCGTGGATATATGTTAC 59.315 45.833 0.00 0.00 0.00 2.50
718 720 4.262292 GGTGCAGGTCGTGGATATATGTTA 60.262 45.833 0.00 0.00 0.00 2.41
719 721 3.494398 GGTGCAGGTCGTGGATATATGTT 60.494 47.826 0.00 0.00 0.00 2.71
720 722 2.037251 GGTGCAGGTCGTGGATATATGT 59.963 50.000 0.00 0.00 0.00 2.29
721 723 2.688507 GGTGCAGGTCGTGGATATATG 58.311 52.381 0.00 0.00 0.00 1.78
722 724 1.272490 CGGTGCAGGTCGTGGATATAT 59.728 52.381 0.00 0.00 0.00 0.86
723 725 0.671796 CGGTGCAGGTCGTGGATATA 59.328 55.000 0.00 0.00 0.00 0.86
724 726 1.441729 CGGTGCAGGTCGTGGATAT 59.558 57.895 0.00 0.00 0.00 1.63
725 727 2.889617 CGGTGCAGGTCGTGGATA 59.110 61.111 0.00 0.00 0.00 2.59
726 728 4.760047 GCGGTGCAGGTCGTGGAT 62.760 66.667 0.00 0.00 0.00 3.41
747 749 2.270352 TCTGGTCGAAAATGGCAGTT 57.730 45.000 0.00 0.00 0.00 3.16
783 789 1.697432 TGGTCGATGGTTCCTTTGTCT 59.303 47.619 0.00 0.00 0.00 3.41
796 811 2.989909 TGAAACTCATGCATGGTCGAT 58.010 42.857 25.97 12.24 0.00 3.59
809 824 3.675467 AAACAGTGAGCGTTGAAACTC 57.325 42.857 0.00 0.00 0.00 3.01
860 882 0.880278 GGTGACTTGCGAGCTGTGAA 60.880 55.000 0.00 0.00 0.00 3.18
866 888 2.551270 CGTTGGTGACTTGCGAGC 59.449 61.111 0.00 0.00 0.00 5.03
920 942 2.654404 GTGCGATCTACCGGCGAC 60.654 66.667 9.30 0.00 0.00 5.19
921 943 4.246206 CGTGCGATCTACCGGCGA 62.246 66.667 9.30 0.00 0.00 5.54
943 979 4.540735 GGATGGGGTGGGCGTACG 62.541 72.222 11.84 11.84 0.00 3.67
972 1008 3.837355 CTTTATAGGAAGCAATGGGCCT 58.163 45.455 4.53 0.00 46.50 5.19
985 1028 2.146342 CGACATGGCTGGCTTTATAGG 58.854 52.381 0.00 0.00 0.00 2.57
1078 1132 2.045536 GCTGCAAGTGGAGGAGGG 60.046 66.667 1.81 0.00 35.30 4.30
1278 1363 0.390209 TAACCGTTGCTACCGCCTTC 60.390 55.000 0.00 0.00 34.43 3.46
1287 1372 3.317449 GGTGACCTTAACCGTTGCT 57.683 52.632 0.00 0.00 0.00 3.91
1314 1399 0.392998 GCCTCAGCCCATCGAGAAAA 60.393 55.000 0.00 0.00 0.00 2.29
1435 1520 4.426416 TGCATGTCAGTGTTATACGGTAC 58.574 43.478 0.00 0.00 0.00 3.34
1440 1525 4.880886 TGCATGCATGTCAGTGTTATAC 57.119 40.909 26.79 7.03 0.00 1.47
1442 1527 4.301637 CATGCATGCATGTCAGTGTTAT 57.698 40.909 40.30 13.68 46.20 1.89
1498 1593 5.767665 ACTAAAGTTGTGCCATGAATACACA 59.232 36.000 0.00 0.24 42.27 3.72
1501 1596 9.855021 AATAAACTAAAGTTGTGCCATGAATAC 57.145 29.630 0.00 0.00 38.44 1.89
1506 1601 6.365789 CCACAATAAACTAAAGTTGTGCCATG 59.634 38.462 10.63 0.00 46.08 3.66
1508 1603 5.361285 ACCACAATAAACTAAAGTTGTGCCA 59.639 36.000 10.63 0.00 46.08 4.92
1545 1643 1.589113 GGGCTACAAAATGGCGCAA 59.411 52.632 10.83 0.00 45.79 4.85
1615 1718 5.049954 CGGTCGACTGTTTGATTTTTCCTTA 60.050 40.000 16.54 0.00 0.00 2.69
1618 1721 3.249080 TCGGTCGACTGTTTGATTTTTCC 59.751 43.478 23.27 0.00 0.00 3.13
1624 1727 0.966920 AGGTCGGTCGACTGTTTGAT 59.033 50.000 23.27 4.64 44.04 2.57
1793 2008 0.890996 CCTCCAGGGAACTTGTGCAC 60.891 60.000 10.75 10.75 40.21 4.57
1874 2099 8.361139 ACGAGGATGTTATTATCTTAACAGGAG 58.639 37.037 0.00 0.00 43.30 3.69
1952 2229 9.659830 CTGGTCACTTTTTATAACAAACTGTAC 57.340 33.333 0.00 0.00 0.00 2.90
2010 2337 7.805163 TGCCCTGGTTTGATCCATATATATAG 58.195 38.462 0.00 0.00 36.84 1.31
2031 2358 3.357079 CAGCGTGTCAACCTGCCC 61.357 66.667 0.00 0.00 0.00 5.36
2032 2359 2.591715 ACAGCGTGTCAACCTGCC 60.592 61.111 1.89 0.00 31.46 4.85
2063 2390 3.249799 TCTGACGTTTTGCATGACGAATT 59.750 39.130 23.68 6.54 41.53 2.17
2068 2395 2.031682 AGCTTCTGACGTTTTGCATGAC 60.032 45.455 0.00 0.00 0.00 3.06
2095 2428 5.924825 CGCACCTACTTAGTACTTTTGAACT 59.075 40.000 0.00 0.00 0.00 3.01
2141 2868 7.231925 TGAAGGTCCTTTACAAAAATTCCTACC 59.768 37.037 5.36 0.00 0.00 3.18
2156 2883 8.598041 GGATATATAGTGACATGAAGGTCCTTT 58.402 37.037 5.36 0.00 36.97 3.11
2159 2902 7.397476 TCAGGATATATAGTGACATGAAGGTCC 59.603 40.741 0.00 0.00 36.97 4.46
2216 3157 7.333921 TGAACATGCATCAAACAAGTTTTCTTT 59.666 29.630 0.00 0.00 38.17 2.52
2217 3158 6.817641 TGAACATGCATCAAACAAGTTTTCTT 59.182 30.769 0.00 0.00 41.31 2.52
2219 3160 6.586868 TGAACATGCATCAAACAAGTTTTC 57.413 33.333 0.00 0.00 29.80 2.29
2220 3161 7.181143 GATGAACATGCATCAAACAAGTTTT 57.819 32.000 0.00 0.00 43.21 2.43
2221 3162 6.774354 GATGAACATGCATCAAACAAGTTT 57.226 33.333 0.00 0.00 43.21 2.66
2239 3190 5.360999 CAGATGTACTCCACTAGGTGATGAA 59.639 44.000 0.00 0.00 35.23 2.57
2252 3203 7.913674 AAATTTTCTCAGTCAGATGTACTCC 57.086 36.000 0.00 0.00 0.00 3.85
2265 3216 9.906111 GTTTTTGCAGAGTTTAAATTTTCTCAG 57.094 29.630 15.12 10.64 0.00 3.35
2276 3227 5.350091 GCCAGTTTTGTTTTTGCAGAGTTTA 59.650 36.000 0.00 0.00 0.00 2.01
2282 3233 2.095692 GTGGCCAGTTTTGTTTTTGCAG 59.904 45.455 5.11 0.00 0.00 4.41
2285 3236 2.013400 GGGTGGCCAGTTTTGTTTTTG 58.987 47.619 5.11 0.00 0.00 2.44
2312 3263 3.673902 TGAACTTGCAAGCTGCTATACA 58.326 40.909 26.27 11.33 45.31 2.29
2347 3298 3.579709 CGCGATTAGGATCAAGCAGTAT 58.420 45.455 0.00 0.00 32.33 2.12
2395 3346 2.043115 TGCTTCTCCTTCCCAGTCTCTA 59.957 50.000 0.00 0.00 0.00 2.43
2402 3353 0.541998 TCGTCTGCTTCTCCTTCCCA 60.542 55.000 0.00 0.00 0.00 4.37
2653 3610 1.217882 CTTGTTGGCGAAGAAGACGT 58.782 50.000 12.24 0.00 34.99 4.34
2796 3758 3.002348 CCAGCCTAATTAAACTACAGCGC 59.998 47.826 0.00 0.00 0.00 5.92
2835 3797 6.326583 CACACCTAGATGGAAGGAATACCTAA 59.673 42.308 0.00 0.00 41.89 2.69
2838 3800 4.409247 ACACACCTAGATGGAAGGAATACC 59.591 45.833 0.00 0.00 39.71 2.73
2842 3804 5.091552 ACTTACACACCTAGATGGAAGGAA 58.908 41.667 14.50 0.00 40.54 3.36
2844 3806 4.466370 TGACTTACACACCTAGATGGAAGG 59.534 45.833 14.50 0.00 40.54 3.46
2847 3809 5.519808 AGATGACTTACACACCTAGATGGA 58.480 41.667 0.00 0.00 39.71 3.41
2892 3858 3.855689 AATGCACCATGCTTAAGTGTC 57.144 42.857 4.02 0.00 45.31 3.67
2903 3869 5.437060 ACGAGGTAGAATTTAATGCACCAT 58.563 37.500 0.00 0.00 0.00 3.55
2904 3870 4.839121 ACGAGGTAGAATTTAATGCACCA 58.161 39.130 0.00 0.00 0.00 4.17
2955 3922 1.252904 GCATGCACACCCCACATCTT 61.253 55.000 14.21 0.00 0.00 2.40
3059 4026 3.449377 GGAGGAGGAGAAAACGAGAGAAT 59.551 47.826 0.00 0.00 0.00 2.40
3073 4040 1.609501 CCGTGACCAAGGAGGAGGA 60.610 63.158 0.00 0.00 41.22 3.71
3155 4130 3.571590 ACTTGCCACCTCACCATTTTTA 58.428 40.909 0.00 0.00 0.00 1.52
3167 4142 1.400494 CCGCATTAACTACTTGCCACC 59.600 52.381 0.00 0.00 32.76 4.61
3185 4160 4.920640 TTACTCTATTTGCCTCTCTCCG 57.079 45.455 0.00 0.00 0.00 4.63
3227 4202 4.059511 TCATTTTGCATTGGAAAGTGCTG 58.940 39.130 17.49 8.80 41.78 4.41
3231 4206 5.796424 AGACTCATTTTGCATTGGAAAGT 57.204 34.783 3.51 0.00 0.00 2.66
3286 4261 9.605275 CTTCATAATGGGTAGTGTCATATATGG 57.395 37.037 12.78 0.00 0.00 2.74
3311 4286 9.352191 CCATGTTACTAGTCTATGTTACTACCT 57.648 37.037 0.00 0.00 0.00 3.08
3354 4329 3.767673 GTGGGTCATAGTGGAGAGTAACA 59.232 47.826 0.00 0.00 0.00 2.41
3362 4337 3.112263 CCTTAAGGTGGGTCATAGTGGA 58.888 50.000 13.83 0.00 0.00 4.02
3374 4349 6.651225 GTCATATAGCCTAAAGCCTTAAGGTG 59.349 42.308 22.55 8.28 45.47 4.00
3375 4350 6.239915 GGTCATATAGCCTAAAGCCTTAAGGT 60.240 42.308 22.55 5.87 45.47 3.50
3381 4356 4.226168 GGATGGTCATATAGCCTAAAGCCT 59.774 45.833 0.00 0.00 45.47 4.58
3382 4357 4.019321 TGGATGGTCATATAGCCTAAAGCC 60.019 45.833 0.00 0.00 45.47 4.35
3399 4374 1.401552 CCACGCACAGTTATTGGATGG 59.598 52.381 0.00 0.00 0.00 3.51
3404 4379 1.876799 TGGTTCCACGCACAGTTATTG 59.123 47.619 0.00 0.00 0.00 1.90
3436 4411 0.839946 AGAATGGACCTTCCCGATGG 59.160 55.000 0.00 0.00 35.03 3.51
3437 4412 2.092968 TCAAGAATGGACCTTCCCGATG 60.093 50.000 0.00 0.00 35.03 3.84
3438 4413 2.196595 TCAAGAATGGACCTTCCCGAT 58.803 47.619 0.00 0.00 35.03 4.18
3440 4415 2.489938 TTCAAGAATGGACCTTCCCG 57.510 50.000 0.00 0.00 35.03 5.14
3442 4417 6.127338 CCCTTAAATTCAAGAATGGACCTTCC 60.127 42.308 0.00 0.00 36.96 3.46
3443 4418 6.663523 TCCCTTAAATTCAAGAATGGACCTTC 59.336 38.462 0.00 0.00 0.00 3.46
3444 4419 6.437477 GTCCCTTAAATTCAAGAATGGACCTT 59.563 38.462 13.95 1.71 34.98 3.50
3445 4420 5.952347 GTCCCTTAAATTCAAGAATGGACCT 59.048 40.000 13.95 0.00 34.98 3.85
3447 4422 5.414765 ACGTCCCTTAAATTCAAGAATGGAC 59.585 40.000 14.53 14.53 36.40 4.02
3448 4423 5.566469 ACGTCCCTTAAATTCAAGAATGGA 58.434 37.500 0.00 0.00 0.00 3.41
3449 4424 5.414454 TGACGTCCCTTAAATTCAAGAATGG 59.586 40.000 14.12 0.00 0.00 3.16
3450 4425 6.494893 TGACGTCCCTTAAATTCAAGAATG 57.505 37.500 14.12 0.00 0.00 2.67
3451 4426 6.715264 ACTTGACGTCCCTTAAATTCAAGAAT 59.285 34.615 14.12 0.00 41.57 2.40
3546 4525 0.537188 CGTGGAAGCCTAGACACCAT 59.463 55.000 0.00 0.00 33.19 3.55
3554 4533 1.141019 GTGATCGCGTGGAAGCCTA 59.859 57.895 5.77 0.00 0.00 3.93
3616 4595 2.927477 ACCAAGTTACGATATGCACGTG 59.073 45.455 12.28 12.28 43.73 4.49
3630 4609 4.177783 CCAACTTTTTACGCAACCAAGTT 58.822 39.130 0.77 0.77 38.03 2.66
3749 4747 9.959721 AAACCATGTCATTTCATTACTACTACT 57.040 29.630 0.00 0.00 0.00 2.57
3755 4753 8.950210 CAGAGTAAACCATGTCATTTCATTACT 58.050 33.333 8.65 8.65 0.00 2.24
3756 4754 8.730680 ACAGAGTAAACCATGTCATTTCATTAC 58.269 33.333 0.00 0.00 0.00 1.89
3757 4755 8.729756 CACAGAGTAAACCATGTCATTTCATTA 58.270 33.333 0.00 0.00 0.00 1.90
3760 4758 5.473162 CCACAGAGTAAACCATGTCATTTCA 59.527 40.000 0.00 0.00 0.00 2.69
3763 4761 3.758554 GCCACAGAGTAAACCATGTCATT 59.241 43.478 0.00 0.00 0.00 2.57
3767 4765 2.371841 TCAGCCACAGAGTAAACCATGT 59.628 45.455 0.00 0.00 0.00 3.21
3768 4766 3.057969 TCAGCCACAGAGTAAACCATG 57.942 47.619 0.00 0.00 0.00 3.66
3770 4768 3.569194 TTTCAGCCACAGAGTAAACCA 57.431 42.857 0.00 0.00 0.00 3.67
3771 4769 5.221244 ACAAATTTCAGCCACAGAGTAAACC 60.221 40.000 0.00 0.00 0.00 3.27
3772 4770 5.831997 ACAAATTTCAGCCACAGAGTAAAC 58.168 37.500 0.00 0.00 0.00 2.01
3773 4771 5.592282 TGACAAATTTCAGCCACAGAGTAAA 59.408 36.000 0.00 0.00 0.00 2.01
3775 4773 4.713553 TGACAAATTTCAGCCACAGAGTA 58.286 39.130 0.00 0.00 0.00 2.59
3776 4774 3.554934 TGACAAATTTCAGCCACAGAGT 58.445 40.909 0.00 0.00 0.00 3.24
3777 4775 4.572985 TTGACAAATTTCAGCCACAGAG 57.427 40.909 0.00 0.00 0.00 3.35
3778 4776 4.341806 ACATTGACAAATTTCAGCCACAGA 59.658 37.500 0.00 0.00 0.00 3.41
3780 4778 4.370049 CACATTGACAAATTTCAGCCACA 58.630 39.130 0.00 0.00 0.00 4.17
3781 4779 3.742369 CCACATTGACAAATTTCAGCCAC 59.258 43.478 0.00 0.00 0.00 5.01
3849 5181 1.449778 GTTCTTCCGGTAGCCCTGC 60.450 63.158 0.00 0.00 0.00 4.85
4098 5441 7.306769 TGTACTAAACATGTGCATGCACGAC 62.307 44.000 37.76 24.34 40.51 4.34
4304 5678 1.724545 TGACGAAGAAGGAGGGGAAA 58.275 50.000 0.00 0.00 0.00 3.13
4483 5860 4.592942 CATCTGGAAGGAAGAAACATGGA 58.407 43.478 0.00 0.00 0.00 3.41
4484 5861 3.129988 GCATCTGGAAGGAAGAAACATGG 59.870 47.826 0.00 0.00 0.00 3.66
4486 5863 3.760684 GTGCATCTGGAAGGAAGAAACAT 59.239 43.478 0.00 0.00 0.00 2.71
4488 5865 2.160417 CGTGCATCTGGAAGGAAGAAAC 59.840 50.000 0.00 0.00 0.00 2.78
4494 5873 1.262417 TGTACGTGCATCTGGAAGGA 58.738 50.000 0.82 0.00 0.00 3.36
4495 5874 1.935873 CATGTACGTGCATCTGGAAGG 59.064 52.381 16.73 0.00 0.00 3.46
4511 5890 5.410355 AAAACTCCATATTTGCTGCATGT 57.590 34.783 1.84 0.00 0.00 3.21
4523 5908 4.021544 GGTTGGTGCATGAAAAACTCCATA 60.022 41.667 0.00 0.00 0.00 2.74
4541 5926 5.704888 TCAACACGCATTTATTTAGGTTGG 58.295 37.500 0.00 0.00 36.10 3.77
4542 5927 7.665471 CAATCAACACGCATTTATTTAGGTTG 58.335 34.615 0.00 0.00 36.59 3.77
4543 5928 6.310224 GCAATCAACACGCATTTATTTAGGTT 59.690 34.615 0.00 0.00 0.00 3.50
4544 5929 5.804979 GCAATCAACACGCATTTATTTAGGT 59.195 36.000 0.00 0.00 0.00 3.08
4545 5930 5.231991 GGCAATCAACACGCATTTATTTAGG 59.768 40.000 0.00 0.00 0.00 2.69
4547 5932 4.795795 CGGCAATCAACACGCATTTATTTA 59.204 37.500 0.00 0.00 0.00 1.40
4550 5935 2.421775 TCGGCAATCAACACGCATTTAT 59.578 40.909 0.00 0.00 0.00 1.40
4639 6095 2.412323 AAGCTCGATGGCGTACGGA 61.412 57.895 18.39 4.15 38.98 4.69
4735 6191 0.394899 GTCCCATTTGAGCCTCCAGG 60.395 60.000 0.00 0.00 38.53 4.45
4744 6200 2.513753 GTCATGGTGTGTCCCATTTGA 58.486 47.619 0.00 0.00 42.70 2.69
4747 6203 0.322456 CCGTCATGGTGTGTCCCATT 60.322 55.000 0.00 0.00 42.70 3.16
4873 6329 1.745489 GAACAGGATGGTGCGGGAC 60.745 63.158 0.00 0.00 33.00 4.46
4886 6342 1.442184 CGTCGTCGGTGAGGAACAG 60.442 63.158 0.00 0.00 0.00 3.16
4943 6399 4.838152 CGGCATCGTGGGTGAGGG 62.838 72.222 0.00 0.00 0.00 4.30
5119 6575 1.670406 CTCGCTGAGCTGCCTGTTT 60.670 57.895 1.78 0.00 0.00 2.83
5464 6920 0.611618 TCGGGTAGTAGCGGGAAACA 60.612 55.000 7.02 0.00 0.00 2.83
5665 7126 0.250124 CACCAAAGTCGTACTGCCCA 60.250 55.000 0.00 0.00 0.00 5.36
5751 7239 1.405526 CCAGGAATTTCTCGAAGGCGA 60.406 52.381 0.00 0.00 45.71 5.54
5806 7302 3.058160 GTTGCCTGCACCTGCGAT 61.058 61.111 0.00 0.00 45.83 4.58
6185 7696 6.649141 ACATATACACGTGTGAATTGTCAAGT 59.351 34.615 30.83 12.94 34.87 3.16
6360 7883 1.770110 AGCACCACTGAAGGGGACA 60.770 57.895 5.38 0.00 32.15 4.02
6371 7894 2.749621 CCAAATCTAACCTCAGCACCAC 59.250 50.000 0.00 0.00 0.00 4.16
6441 7964 0.248907 CGTCGCGAATCCATACACCT 60.249 55.000 12.06 0.00 0.00 4.00
6458 7981 1.469335 ATCCGGTCACACCAGAACGT 61.469 55.000 0.00 0.00 46.80 3.99
6907 8433 9.316730 ACTCGTACACTGTTTTATTTTGTCTAA 57.683 29.630 0.00 0.00 0.00 2.10
6908 8434 8.876275 ACTCGTACACTGTTTTATTTTGTCTA 57.124 30.769 0.00 0.00 0.00 2.59
6909 8435 7.781548 ACTCGTACACTGTTTTATTTTGTCT 57.218 32.000 0.00 0.00 0.00 3.41
6910 8436 8.758715 AGTACTCGTACACTGTTTTATTTTGTC 58.241 33.333 9.62 0.00 38.48 3.18
6911 8437 8.545420 CAGTACTCGTACACTGTTTTATTTTGT 58.455 33.333 9.62 0.00 37.87 2.83
6912 8438 8.757789 TCAGTACTCGTACACTGTTTTATTTTG 58.242 33.333 9.62 0.00 42.28 2.44
6913 8439 8.876275 TCAGTACTCGTACACTGTTTTATTTT 57.124 30.769 9.62 0.00 42.28 1.82
6914 8440 8.758715 GTTCAGTACTCGTACACTGTTTTATTT 58.241 33.333 9.62 0.00 42.28 1.40
6915 8441 7.922278 TGTTCAGTACTCGTACACTGTTTTATT 59.078 33.333 9.62 0.00 42.28 1.40
6916 8442 7.428020 TGTTCAGTACTCGTACACTGTTTTAT 58.572 34.615 9.62 0.00 42.28 1.40
6917 8443 6.794374 TGTTCAGTACTCGTACACTGTTTTA 58.206 36.000 9.62 0.00 42.28 1.52
6918 8444 5.653507 TGTTCAGTACTCGTACACTGTTTT 58.346 37.500 9.62 0.00 42.28 2.43
6919 8445 5.252969 TGTTCAGTACTCGTACACTGTTT 57.747 39.130 9.62 0.00 42.28 2.83
6920 8446 4.906065 TGTTCAGTACTCGTACACTGTT 57.094 40.909 9.62 0.00 42.28 3.16
6921 8447 6.564709 TTATGTTCAGTACTCGTACACTGT 57.435 37.500 9.62 0.44 42.28 3.55
6922 8448 7.594015 ACTTTTATGTTCAGTACTCGTACACTG 59.406 37.037 9.62 5.01 42.88 3.66
6923 8449 7.655490 ACTTTTATGTTCAGTACTCGTACACT 58.345 34.615 9.62 0.00 38.48 3.55
6924 8450 7.864307 ACTTTTATGTTCAGTACTCGTACAC 57.136 36.000 9.62 0.68 38.48 2.90
6925 8451 9.398170 GTTACTTTTATGTTCAGTACTCGTACA 57.602 33.333 9.62 0.00 38.48 2.90
6926 8452 9.398170 TGTTACTTTTATGTTCAGTACTCGTAC 57.602 33.333 0.00 0.00 36.35 3.67
6928 8454 9.485206 AATGTTACTTTTATGTTCAGTACTCGT 57.515 29.630 0.00 0.00 0.00 4.18
6934 8460 9.463443 GAGCAAAATGTTACTTTTATGTTCAGT 57.537 29.630 0.00 0.00 0.00 3.41
6935 8461 9.683069 AGAGCAAAATGTTACTTTTATGTTCAG 57.317 29.630 15.93 0.00 0.00 3.02
6936 8462 9.677567 GAGAGCAAAATGTTACTTTTATGTTCA 57.322 29.630 15.93 0.00 0.00 3.18
6937 8463 9.899226 AGAGAGCAAAATGTTACTTTTATGTTC 57.101 29.630 0.00 5.94 0.00 3.18
6939 8465 9.683069 CAAGAGAGCAAAATGTTACTTTTATGT 57.317 29.630 0.00 0.00 0.00 2.29
6940 8466 9.897744 TCAAGAGAGCAAAATGTTACTTTTATG 57.102 29.630 0.00 0.89 0.00 1.90
6942 8468 9.337396 TCTCAAGAGAGCAAAATGTTACTTTTA 57.663 29.630 0.00 0.00 41.81 1.52
6943 8469 8.225603 TCTCAAGAGAGCAAAATGTTACTTTT 57.774 30.769 0.00 0.00 41.81 2.27
6944 8470 7.807977 TCTCAAGAGAGCAAAATGTTACTTT 57.192 32.000 0.00 0.00 41.81 2.66
6959 8485 1.638070 TCAGGAGGAGCTCTCAAGAGA 59.362 52.381 14.64 3.05 44.74 3.10
6960 8486 2.142356 TCAGGAGGAGCTCTCAAGAG 57.858 55.000 14.64 2.53 44.19 2.85
6961 8487 2.612285 TTCAGGAGGAGCTCTCAAGA 57.388 50.000 14.64 7.91 44.19 3.02
6962 8488 3.692257 TTTTCAGGAGGAGCTCTCAAG 57.308 47.619 14.64 5.87 44.19 3.02
6980 8506 0.611896 ATGGCAGCGGCTAGGTTTTT 60.612 50.000 9.17 0.00 40.87 1.94
6981 8507 1.000896 ATGGCAGCGGCTAGGTTTT 60.001 52.632 9.17 0.00 40.87 2.43
6982 8508 1.452108 GATGGCAGCGGCTAGGTTT 60.452 57.895 9.17 0.00 40.87 3.27
6983 8509 1.987807 ATGATGGCAGCGGCTAGGTT 61.988 55.000 9.17 0.00 40.87 3.50
6984 8510 1.121407 TATGATGGCAGCGGCTAGGT 61.121 55.000 9.17 0.00 40.87 3.08
6985 8511 0.390866 CTATGATGGCAGCGGCTAGG 60.391 60.000 9.17 0.00 40.87 3.02
6986 8512 0.605083 TCTATGATGGCAGCGGCTAG 59.395 55.000 9.17 2.22 40.87 3.42
6987 8513 1.205655 GATCTATGATGGCAGCGGCTA 59.794 52.381 9.17 2.13 40.87 3.93
6988 8514 0.036577 GATCTATGATGGCAGCGGCT 60.037 55.000 9.17 0.00 40.87 5.52
6989 8515 1.357258 CGATCTATGATGGCAGCGGC 61.357 60.000 0.00 0.00 40.13 6.53
6990 8516 0.738762 CCGATCTATGATGGCAGCGG 60.739 60.000 0.00 0.00 0.00 5.52
6991 8517 0.037882 ACCGATCTATGATGGCAGCG 60.038 55.000 0.00 0.00 0.00 5.18
6992 8518 2.072298 GAACCGATCTATGATGGCAGC 58.928 52.381 0.00 0.00 0.00 5.25
6993 8519 2.613977 GGGAACCGATCTATGATGGCAG 60.614 54.545 0.00 0.00 40.86 4.85
6994 8520 1.347707 GGGAACCGATCTATGATGGCA 59.652 52.381 0.00 0.00 40.86 4.92
6995 8521 2.100605 GGGAACCGATCTATGATGGC 57.899 55.000 0.00 0.00 40.86 4.40
7009 8535 2.674220 CCAGCCAGAGGAGGGGAAC 61.674 68.421 0.00 0.00 0.00 3.62
7010 8536 2.285668 CCAGCCAGAGGAGGGGAA 60.286 66.667 0.00 0.00 0.00 3.97
7034 8560 3.760035 CCACTCCTCCCGACACCG 61.760 72.222 0.00 0.00 0.00 4.94
7035 8561 3.391382 CCCACTCCTCCCGACACC 61.391 72.222 0.00 0.00 0.00 4.16
7036 8562 3.391382 CCCCACTCCTCCCGACAC 61.391 72.222 0.00 0.00 0.00 3.67
7037 8563 3.168759 TTCCCCACTCCTCCCGACA 62.169 63.158 0.00 0.00 0.00 4.35
7038 8564 2.284405 TTCCCCACTCCTCCCGAC 60.284 66.667 0.00 0.00 0.00 4.79
7039 8565 2.284405 GTTCCCCACTCCTCCCGA 60.284 66.667 0.00 0.00 0.00 5.14
7040 8566 3.400054 GGTTCCCCACTCCTCCCG 61.400 72.222 0.00 0.00 0.00 5.14
7041 8567 3.015753 GGGTTCCCCACTCCTCCC 61.016 72.222 0.00 0.00 44.65 4.30
7050 8576 2.777692 TCACTCATAGATTGGGTTCCCC 59.222 50.000 5.34 0.00 36.71 4.81
7051 8577 4.080299 ACTTCACTCATAGATTGGGTTCCC 60.080 45.833 0.12 0.12 36.71 3.97
7052 8578 5.104259 ACTTCACTCATAGATTGGGTTCC 57.896 43.478 0.00 0.00 36.71 3.62
7053 8579 6.410540 AGAACTTCACTCATAGATTGGGTTC 58.589 40.000 0.00 0.00 36.71 3.62
7054 8580 6.380079 AGAACTTCACTCATAGATTGGGTT 57.620 37.500 0.00 0.00 36.71 4.11
7055 8581 6.013379 TGAAGAACTTCACTCATAGATTGGGT 60.013 38.462 12.40 0.00 43.90 4.51
7056 8582 6.409704 TGAAGAACTTCACTCATAGATTGGG 58.590 40.000 12.40 0.00 43.90 4.12
7066 8592 9.209175 ACACTATTGTTATGAAGAACTTCACTC 57.791 33.333 17.61 11.85 41.93 3.51
7067 8593 9.561069 AACACTATTGTTATGAAGAACTTCACT 57.439 29.630 17.61 10.58 44.53 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.