Multiple sequence alignment - TraesCS7B01G145000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G145000 chr7B 100.000 3913 0 0 1 3913 187785808 187781896 0.000000e+00 7227.0
1 TraesCS7B01G145000 chr7B 91.200 125 9 2 2130 2254 78066837 78066959 6.720000e-38 169.0
2 TraesCS7B01G145000 chr7D 96.215 2404 75 7 876 3269 213783489 213785886 0.000000e+00 3921.0
3 TraesCS7B01G145000 chr7D 93.596 890 39 6 1 888 213780722 213781595 0.000000e+00 1312.0
4 TraesCS7B01G145000 chr7D 97.456 629 14 1 3287 3913 213785869 213786497 0.000000e+00 1072.0
5 TraesCS7B01G145000 chr7A 95.511 1849 53 13 938 2764 225615690 225617530 0.000000e+00 2928.0
6 TraesCS7B01G145000 chr7A 90.827 665 59 1 1 665 225360928 225361590 0.000000e+00 889.0
7 TraesCS7B01G145000 chr7A 96.190 525 17 2 2745 3269 225617620 225618141 0.000000e+00 856.0
8 TraesCS7B01G145000 chr7A 91.683 517 26 8 3405 3913 225630710 225631217 0.000000e+00 701.0
9 TraesCS7B01G145000 chr7A 82.313 147 12 4 791 924 225615250 225615395 8.880000e-22 115.0
10 TraesCS7B01G145000 chr5B 95.536 112 5 0 2143 2254 243411199 243411088 3.110000e-41 180.0
11 TraesCS7B01G145000 chr5A 95.536 112 5 0 2143 2254 425456573 425456462 3.110000e-41 180.0
12 TraesCS7B01G145000 chr5A 83.529 85 13 1 2584 2668 33929158 33929241 1.170000e-10 78.7
13 TraesCS7B01G145000 chr2B 95.495 111 5 0 2144 2254 660461420 660461530 1.120000e-40 178.0
14 TraesCS7B01G145000 chr4A 94.690 113 6 0 2142 2254 475420520 475420632 4.020000e-40 176.0
15 TraesCS7B01G145000 chr4A 90.476 126 10 2 2129 2254 673447833 673447956 8.700000e-37 165.0
16 TraesCS7B01G145000 chr2A 91.270 126 9 2 2131 2254 595342679 595342804 1.870000e-38 171.0
17 TraesCS7B01G145000 chr2A 90.541 74 7 0 2595 2668 102688114 102688041 8.950000e-17 99.0
18 TraesCS7B01G145000 chr1B 88.889 90 10 0 2581 2670 411570413 411570502 1.150000e-20 111.0
19 TraesCS7B01G145000 chr6A 89.412 85 7 1 2583 2667 66388163 66388081 5.350000e-19 106.0
20 TraesCS7B01G145000 chr6A 84.783 92 12 2 2572 2663 478928028 478928117 1.500000e-14 91.6
21 TraesCS7B01G145000 chr2D 85.882 85 11 1 2584 2668 234147847 234147930 5.390000e-14 89.8
22 TraesCS7B01G145000 chr1D 83.333 90 14 1 2575 2663 22976627 22976538 9.010000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G145000 chr7B 187781896 187785808 3912 True 7227.000000 7227 100.000000 1 3913 1 chr7B.!!$R1 3912
1 TraesCS7B01G145000 chr7D 213780722 213786497 5775 False 2101.666667 3921 95.755667 1 3913 3 chr7D.!!$F1 3912
2 TraesCS7B01G145000 chr7A 225615250 225618141 2891 False 1299.666667 2928 91.338000 791 3269 3 chr7A.!!$F3 2478
3 TraesCS7B01G145000 chr7A 225360928 225361590 662 False 889.000000 889 90.827000 1 665 1 chr7A.!!$F1 664
4 TraesCS7B01G145000 chr7A 225630710 225631217 507 False 701.000000 701 91.683000 3405 3913 1 chr7A.!!$F2 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.036294 GTTCTCCTCCAAAGGGACGG 60.036 60.0 0.00 0.0 43.56 4.79 F
288 289 0.040499 GGGGCCCATGAAAAGTGGTA 59.960 55.0 26.86 0.0 34.87 3.25 F
1459 3662 0.035915 AGAAAGGGAGAGAAAGCGGC 60.036 55.0 0.00 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 3662 0.618680 TCCACCACCATCTCCTCCTG 60.619 60.000 0.0 0.0 0.0 3.86 R
1751 3954 2.736721 ACATCTTTGAACATGTCGGTCG 59.263 45.455 0.0 0.0 0.0 4.79 R
3280 5614 0.471617 AGATTTCTCATGCTCCCCCG 59.528 55.000 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.773087 TCTACCTCTACTCGAGCTCCTT 59.227 50.000 13.61 0.00 38.49 3.36
50 51 2.073101 CCTCAAGCCCTAGTCCCCC 61.073 68.421 0.00 0.00 0.00 5.40
72 73 0.036294 GTTCTCCTCCAAAGGGACGG 60.036 60.000 0.00 0.00 43.56 4.79
219 220 1.267574 AAAGAGAGATGGCCAGCCGA 61.268 55.000 19.48 0.00 39.42 5.54
254 255 0.468648 GGACCTGAACCTTATCCCGG 59.531 60.000 0.00 0.00 0.00 5.73
273 274 0.591659 GAACTCTTTGTCGTTGGGGC 59.408 55.000 0.00 0.00 0.00 5.80
288 289 0.040499 GGGGCCCATGAAAAGTGGTA 59.960 55.000 26.86 0.00 34.87 3.25
365 366 1.153823 CTTCGACCGAGGCGACAAT 60.154 57.895 1.07 0.00 37.52 2.71
402 403 3.485633 CTTCGACATAACAACGACTCGA 58.514 45.455 5.20 0.00 35.82 4.04
505 508 8.303876 CCAAAACTAGCCAAATGTTACACTAAT 58.696 33.333 0.00 0.00 0.00 1.73
509 512 4.929479 AGCCAAATGTTACACTAATCCCA 58.071 39.130 0.00 0.00 0.00 4.37
569 572 1.376683 GCCGACCCATTAGCACACA 60.377 57.895 0.00 0.00 0.00 3.72
623 626 0.392461 GCTAAACGGGTCATGCTGGA 60.392 55.000 0.00 0.00 0.00 3.86
669 672 3.314331 CTGTGAGACCAGGCCCGT 61.314 66.667 0.00 0.00 0.00 5.28
696 699 1.652860 GCACGACACGACTCGTTTTTC 60.653 52.381 0.00 0.00 44.51 2.29
699 702 2.223433 ACGACACGACTCGTTTTTCTCT 60.223 45.455 0.00 0.00 44.51 3.10
754 757 5.261216 CCCAAATAGCCTGAAAAGAACCTA 58.739 41.667 0.00 0.00 0.00 3.08
778 781 1.919918 CTTGAAAAGCACGCAAACCA 58.080 45.000 0.00 0.00 36.98 3.67
840 855 2.594303 CAGCCCACTTTGCCACGA 60.594 61.111 0.00 0.00 0.00 4.35
850 865 2.108700 CTTTGCCACGAAAAGACAACG 58.891 47.619 0.00 0.00 36.88 4.10
900 2822 2.756760 GGAAGTGTATACCGACCTGACA 59.243 50.000 0.00 0.00 0.00 3.58
912 2834 0.836400 ACCTGACACCACCCGATCTT 60.836 55.000 0.00 0.00 0.00 2.40
1017 3220 4.087892 ATGGAGCCGAACGCAGCT 62.088 61.111 0.00 0.00 43.55 4.24
1184 3387 4.704833 GCTGCCGTGGAAGGAGCA 62.705 66.667 0.00 0.00 35.75 4.26
1452 3655 2.292587 GGAGGAGGAAGAAAGGGAGAGA 60.293 54.545 0.00 0.00 0.00 3.10
1459 3662 0.035915 AGAAAGGGAGAGAAAGCGGC 60.036 55.000 0.00 0.00 0.00 6.53
1532 3735 1.844130 GGAGGTTGGTGTGGGACTT 59.156 57.895 0.00 0.00 0.00 3.01
1678 3881 3.856521 CGTTTCTCACTGCTCTGATACTG 59.143 47.826 0.00 0.00 0.00 2.74
1691 3894 5.714047 CTCTGATACTGTTACTTCTGCACA 58.286 41.667 0.00 0.00 0.00 4.57
1751 3954 2.284190 GCAAGCTCAGTATCAGGTTCC 58.716 52.381 0.00 0.00 28.96 3.62
1793 3996 7.761249 AGATGTGCTAATTACTGCCAATTTTTC 59.239 33.333 0.00 0.00 30.84 2.29
1794 3997 6.162777 TGTGCTAATTACTGCCAATTTTTCC 58.837 36.000 0.00 0.00 30.84 3.13
1795 3998 6.014669 TGTGCTAATTACTGCCAATTTTTCCT 60.015 34.615 0.00 0.00 30.84 3.36
1796 3999 7.177568 TGTGCTAATTACTGCCAATTTTTCCTA 59.822 33.333 0.00 0.00 30.84 2.94
1887 4103 4.000325 TGTGATTTGGATAGAACACCGTG 59.000 43.478 0.00 0.00 0.00 4.94
1892 4108 3.260475 TGGATAGAACACCGTGATTGG 57.740 47.619 5.28 0.00 0.00 3.16
1902 4118 3.217681 ACCGTGATTGGTGTAGGTTTT 57.782 42.857 0.00 0.00 41.85 2.43
2141 4366 3.010420 GGCTCGGCTCTGAAAGTAAATT 58.990 45.455 0.00 0.00 33.76 1.82
2177 4402 1.516603 GTGAACGTAGCTCCCGCTC 60.517 63.158 5.69 4.25 45.15 5.03
2343 4569 3.768757 TCCTTTTGCCCAAGGTATCATTG 59.231 43.478 10.13 0.00 43.62 2.82
2472 4698 4.462483 TGGATGCAAGGTCAGTTTTATTCC 59.538 41.667 0.00 0.00 0.00 3.01
2522 4748 4.746089 GCAGAGCATTCATACCTGATTCCT 60.746 45.833 0.00 0.00 0.00 3.36
2698 4924 3.675995 TGCCAGTGCATTTCTCCAT 57.324 47.368 0.00 0.00 44.23 3.41
2707 4933 4.706962 AGTGCATTTCTCCATCCTTTTACC 59.293 41.667 0.00 0.00 0.00 2.85
2713 4939 3.278574 TCTCCATCCTTTTACCGCATTG 58.721 45.455 0.00 0.00 0.00 2.82
2735 4961 4.818005 TGCAACCAGATAGATACTGCAATG 59.182 41.667 0.00 0.00 35.53 2.82
2746 4972 9.770503 GATAGATACTGCAATGCTCATATTTTG 57.229 33.333 6.82 0.00 0.00 2.44
2755 5089 7.436970 TGCAATGCTCATATTTTGCTCTATTTG 59.563 33.333 6.82 0.00 43.67 2.32
2871 5205 2.753452 CAGTTTGAATCAGCAGGAGCAT 59.247 45.455 0.00 0.00 45.49 3.79
2913 5247 4.754114 GGCCTAATGAAGATGATCACTGAC 59.246 45.833 0.00 0.00 30.82 3.51
3177 5511 4.225942 TCATAGCCAACTGGAGAAACTGAT 59.774 41.667 0.00 0.00 37.39 2.90
3295 5629 3.008517 TGCGGGGGAGCATGAGAA 61.009 61.111 0.00 0.00 42.92 2.87
3296 5630 2.272146 GCGGGGGAGCATGAGAAA 59.728 61.111 0.00 0.00 37.05 2.52
3297 5631 1.152881 GCGGGGGAGCATGAGAAAT 60.153 57.895 0.00 0.00 37.05 2.17
3298 5632 1.169034 GCGGGGGAGCATGAGAAATC 61.169 60.000 0.00 0.00 37.05 2.17
3299 5633 0.471617 CGGGGGAGCATGAGAAATCT 59.528 55.000 0.00 0.00 0.00 2.40
3305 5639 4.382362 GGGGAGCATGAGAAATCTTTTTGG 60.382 45.833 0.00 0.00 0.00 3.28
3318 5652 6.544928 AATCTTTTTGGGTCAGTTTGAAGT 57.455 33.333 0.00 0.00 0.00 3.01
3323 5657 6.783708 TTTTGGGTCAGTTTGAAGTTACAT 57.216 33.333 0.00 0.00 0.00 2.29
3339 5673 6.192970 AGTTACATAGATGGAATGGGAAGG 57.807 41.667 0.00 0.00 32.35 3.46
3437 5771 1.520600 AAGTTACCGCGGCCAAAAGG 61.521 55.000 28.58 1.93 0.00 3.11
3637 5974 0.257039 AGCCAATGCCGGAATCTCTT 59.743 50.000 5.05 0.00 38.69 2.85
3763 6102 7.383300 TCAGTGAGCTCAATTATTATGTCATCG 59.617 37.037 20.19 0.16 0.00 3.84
3769 6108 7.874528 AGCTCAATTATTATGTCATCGTGATGA 59.125 33.333 8.43 8.43 44.83 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.196939 GCTCGAGTAGAGGTAGAAGGA 57.803 52.381 15.13 0.00 46.91 3.36
29 30 1.995626 GGACTAGGGCTTGAGGGCA 60.996 63.158 0.00 0.00 42.84 5.36
219 220 3.196685 CAGGTCCTTCTTCTTCCTTCGAT 59.803 47.826 0.00 0.00 0.00 3.59
254 255 0.591659 GCCCCAACGACAAAGAGTTC 59.408 55.000 0.00 0.00 0.00 3.01
273 274 5.723295 CAAAGGAATACCACTTTTCATGGG 58.277 41.667 0.00 0.00 41.97 4.00
288 289 2.283101 TGGCCGCTGCAAAGGAAT 60.283 55.556 10.97 0.00 40.13 3.01
460 461 4.186077 TGGGTTGTCCAATGGAGTTTTA 57.814 40.909 0.27 0.00 43.84 1.52
505 508 3.636300 CCAGTCTGATTGTTTGTTTGGGA 59.364 43.478 0.00 0.00 0.00 4.37
509 512 2.365293 GGCCCAGTCTGATTGTTTGTTT 59.635 45.455 0.00 0.00 0.00 2.83
642 645 0.462759 GGTCTCACAGCCTATGCACC 60.463 60.000 0.00 0.00 41.13 5.01
696 699 9.668497 GGGGCCTATATACAAATAAGTTAAGAG 57.332 37.037 0.84 0.00 0.00 2.85
754 757 4.506288 GGTTTGCGTGCTTTTCAAGTTTAT 59.494 37.500 0.00 0.00 0.00 1.40
775 778 3.631250 CATGTTTAGGCCTAATGGTGGT 58.369 45.455 25.70 6.76 35.27 4.16
776 779 2.362077 GCATGTTTAGGCCTAATGGTGG 59.638 50.000 25.70 14.87 35.27 4.61
777 780 3.715628 GCATGTTTAGGCCTAATGGTG 57.284 47.619 25.70 21.90 35.27 4.17
840 855 6.208599 ACATGGATTAATGGACGTTGTCTTTT 59.791 34.615 0.00 0.00 32.47 2.27
850 865 4.213482 GGCTTCGTACATGGATTAATGGAC 59.787 45.833 0.00 0.00 37.93 4.02
924 2846 4.974438 TCCGGCCTGGGGTCAAGT 62.974 66.667 12.77 0.00 38.76 3.16
927 2849 3.961414 GTTTCCGGCCTGGGGTCA 61.961 66.667 12.77 0.00 38.76 4.02
928 2850 3.501040 TTGTTTCCGGCCTGGGGTC 62.501 63.158 12.77 5.30 38.76 4.46
1203 3406 0.850100 CCTCCTCTCTCTGGCTCCTA 59.150 60.000 0.00 0.00 0.00 2.94
1248 3451 2.123077 CTCTCCGGGATGGCCTCT 60.123 66.667 3.32 0.00 37.80 3.69
1452 3655 1.222936 CATCTCCTCCTGCCGCTTT 59.777 57.895 0.00 0.00 0.00 3.51
1459 3662 0.618680 TCCACCACCATCTCCTCCTG 60.619 60.000 0.00 0.00 0.00 3.86
1678 3881 5.485662 ACAAAGAACTGTGCAGAAGTAAC 57.514 39.130 6.17 1.64 0.00 2.50
1691 3894 7.339466 ACCAACAGAATTACAGAACAAAGAACT 59.661 33.333 0.00 0.00 0.00 3.01
1751 3954 2.736721 ACATCTTTGAACATGTCGGTCG 59.263 45.455 0.00 0.00 0.00 4.79
1793 3996 8.723311 TCACTTAATTCCATTTTTGTACGTAGG 58.277 33.333 0.00 0.00 0.00 3.18
1796 3999 8.626526 ACTTCACTTAATTCCATTTTTGTACGT 58.373 29.630 0.00 0.00 0.00 3.57
1844 4047 7.851228 TCACAATCTCATACACAATCCTAACT 58.149 34.615 0.00 0.00 0.00 2.24
1887 4103 7.836842 ACAAATCCATAAAACCTACACCAATC 58.163 34.615 0.00 0.00 0.00 2.67
1959 4175 4.019771 TGTGGTAAATGCAGTAGGATGTGA 60.020 41.667 0.00 0.00 0.00 3.58
2022 4246 7.810766 CAAATATTGGACAATAAGCACGTTT 57.189 32.000 8.65 2.14 36.90 3.60
2284 4510 9.559958 AGAACAAATGACAACGAAATAATGATC 57.440 29.630 0.00 0.00 0.00 2.92
2300 4526 6.819284 AGGAAATGCAGAAAAGAACAAATGA 58.181 32.000 0.00 0.00 0.00 2.57
2343 4569 3.877508 AGTTCCTTCAGCAACACTTACAC 59.122 43.478 0.00 0.00 0.00 2.90
2408 4634 1.725641 TGAACACGCAGCTTATCCAG 58.274 50.000 0.00 0.00 0.00 3.86
2472 4698 2.002586 CAGATAGTTGGCTTGTGTCCG 58.997 52.381 0.00 0.00 0.00 4.79
2522 4748 9.844790 CAAAGAAGCAATGTTATTACAAGATGA 57.155 29.630 0.00 0.00 37.91 2.92
2586 4812 5.425539 TGTCTTATCTCAAGTTAAGGAGGGG 59.574 44.000 7.62 0.00 31.53 4.79
2698 4924 1.271102 GGTTGCAATGCGGTAAAAGGA 59.729 47.619 0.59 0.00 0.00 3.36
2707 4933 4.060900 AGTATCTATCTGGTTGCAATGCG 58.939 43.478 0.59 0.00 0.00 4.73
2713 4939 4.320057 GCATTGCAGTATCTATCTGGTTGC 60.320 45.833 3.15 0.00 33.98 4.17
2735 4961 9.357652 TGAAAACAAATAGAGCAAAATATGAGC 57.642 29.630 0.00 0.00 0.00 4.26
3177 5511 3.072330 TGTTTCCACTAACATGCAGGAGA 59.928 43.478 4.84 0.00 33.31 3.71
3182 5516 9.407380 AGAATATATTGTTTCCACTAACATGCA 57.593 29.630 1.78 0.00 37.81 3.96
3274 5608 1.228706 TCATGCTCCCCCGCAAAAA 60.229 52.632 0.00 0.00 44.06 1.94
3275 5609 1.678635 CTCATGCTCCCCCGCAAAA 60.679 57.895 0.00 0.00 44.06 2.44
3276 5610 2.045045 CTCATGCTCCCCCGCAAA 60.045 61.111 0.00 0.00 44.06 3.68
3277 5611 2.135903 TTTCTCATGCTCCCCCGCAA 62.136 55.000 0.00 0.00 44.06 4.85
3278 5612 1.925285 ATTTCTCATGCTCCCCCGCA 61.925 55.000 0.00 0.00 45.10 5.69
3279 5613 1.152881 ATTTCTCATGCTCCCCCGC 60.153 57.895 0.00 0.00 0.00 6.13
3280 5614 0.471617 AGATTTCTCATGCTCCCCCG 59.528 55.000 0.00 0.00 0.00 5.73
3281 5615 2.744352 AAGATTTCTCATGCTCCCCC 57.256 50.000 0.00 0.00 0.00 5.40
3282 5616 4.382362 CCAAAAAGATTTCTCATGCTCCCC 60.382 45.833 0.00 0.00 0.00 4.81
3283 5617 4.382362 CCCAAAAAGATTTCTCATGCTCCC 60.382 45.833 0.00 0.00 0.00 4.30
3284 5618 4.221482 ACCCAAAAAGATTTCTCATGCTCC 59.779 41.667 0.00 0.00 0.00 4.70
3285 5619 5.047802 TGACCCAAAAAGATTTCTCATGCTC 60.048 40.000 0.00 0.00 0.00 4.26
3286 5620 4.834496 TGACCCAAAAAGATTTCTCATGCT 59.166 37.500 0.00 0.00 0.00 3.79
3287 5621 5.138125 TGACCCAAAAAGATTTCTCATGC 57.862 39.130 0.00 0.00 0.00 4.06
3288 5622 6.336842 ACTGACCCAAAAAGATTTCTCATG 57.663 37.500 0.00 0.00 0.00 3.07
3289 5623 6.983906 AACTGACCCAAAAAGATTTCTCAT 57.016 33.333 0.00 0.00 0.00 2.90
3290 5624 6.379703 TCAAACTGACCCAAAAAGATTTCTCA 59.620 34.615 0.00 0.00 0.00 3.27
3291 5625 6.805713 TCAAACTGACCCAAAAAGATTTCTC 58.194 36.000 0.00 0.00 0.00 2.87
3292 5626 6.790232 TCAAACTGACCCAAAAAGATTTCT 57.210 33.333 0.00 0.00 0.00 2.52
3293 5627 7.041721 ACTTCAAACTGACCCAAAAAGATTTC 58.958 34.615 0.00 0.00 0.00 2.17
3294 5628 6.946340 ACTTCAAACTGACCCAAAAAGATTT 58.054 32.000 0.00 0.00 0.00 2.17
3295 5629 6.544928 ACTTCAAACTGACCCAAAAAGATT 57.455 33.333 0.00 0.00 0.00 2.40
3296 5630 6.544928 AACTTCAAACTGACCCAAAAAGAT 57.455 33.333 0.00 0.00 0.00 2.40
3297 5631 5.993748 AACTTCAAACTGACCCAAAAAGA 57.006 34.783 0.00 0.00 0.00 2.52
3298 5632 6.626302 TGTAACTTCAAACTGACCCAAAAAG 58.374 36.000 0.00 0.00 0.00 2.27
3299 5633 6.591750 TGTAACTTCAAACTGACCCAAAAA 57.408 33.333 0.00 0.00 0.00 1.94
3305 5639 7.103641 TCCATCTATGTAACTTCAAACTGACC 58.896 38.462 0.00 0.00 0.00 4.02
3318 5652 6.159575 TGAACCTTCCCATTCCATCTATGTAA 59.840 38.462 0.00 0.00 0.00 2.41
3323 5657 3.459598 CCTGAACCTTCCCATTCCATCTA 59.540 47.826 0.00 0.00 0.00 1.98
3339 5673 2.609459 CACCATATGCGAACTCCTGAAC 59.391 50.000 0.00 0.00 0.00 3.18
3437 5771 4.307432 TCTTCACAGCTTAACACTACTGC 58.693 43.478 0.00 0.00 33.35 4.40
3579 5915 3.059982 CAGCCTTCCCACGACTCA 58.940 61.111 0.00 0.00 0.00 3.41
3637 5974 5.512753 ACACAAATGTAATTGCACTGTGA 57.487 34.783 30.45 0.58 36.10 3.58
3769 6108 2.353958 CAGGGTGGCTGATGCAGT 59.646 61.111 0.00 0.00 41.91 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.