Multiple sequence alignment - TraesCS7B01G144400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G144400 chr7B 100.000 3217 0 0 1 3217 186813351 186816567 0.000000e+00 5941.0
1 TraesCS7B01G144400 chr7B 94.355 124 5 2 675 796 38615088 38614965 4.240000e-44 189.0
2 TraesCS7B01G144400 chr7B 95.690 116 4 1 677 791 295202774 295202659 5.480000e-43 185.0
3 TraesCS7B01G144400 chr7A 95.489 2239 77 14 984 3217 226758998 226756779 0.000000e+00 3554.0
4 TraesCS7B01G144400 chr7A 88.630 686 72 6 7 687 132413199 132412515 0.000000e+00 830.0
5 TraesCS7B01G144400 chr7A 90.123 324 32 0 1037 1360 621011430 621011107 3.840000e-114 422.0
6 TraesCS7B01G144400 chr7A 84.404 109 15 2 702 809 704234537 704234644 4.390000e-19 106.0
7 TraesCS7B01G144400 chr7D 95.236 2267 62 13 984 3217 214354619 214352366 0.000000e+00 3546.0
8 TraesCS7B01G144400 chr7D 89.695 689 67 4 5 690 133613914 133613227 0.000000e+00 876.0
9 TraesCS7B01G144400 chr7D 89.001 691 73 3 2 690 133490582 133491271 0.000000e+00 852.0
10 TraesCS7B01G144400 chr4A 84.180 689 103 6 2 686 54727774 54728460 0.000000e+00 664.0
11 TraesCS7B01G144400 chr2D 80.146 685 133 3 5 686 544323982 544323298 2.860000e-140 508.0
12 TraesCS7B01G144400 chr2D 79.691 453 83 7 236 686 440476437 440475992 5.180000e-83 318.0
13 TraesCS7B01G144400 chr3A 77.536 690 147 8 2 686 543173934 543174620 2.990000e-110 409.0
14 TraesCS7B01G144400 chr3A 76.434 645 139 12 33 671 466038608 466039245 1.430000e-88 337.0
15 TraesCS7B01G144400 chr2A 84.375 352 43 8 995 1346 747160079 747160418 5.140000e-88 335.0
16 TraesCS7B01G144400 chr4B 98.246 114 1 1 684 796 650659911 650660024 7.040000e-47 198.0
17 TraesCS7B01G144400 chr4B 97.368 114 2 1 678 790 565865968 565865855 3.280000e-45 193.0
18 TraesCS7B01G144400 chr6B 97.391 115 2 1 678 791 548122333 548122219 9.110000e-46 195.0
19 TraesCS7B01G144400 chr6B 97.170 106 2 1 684 788 81071923 81072028 9.170000e-41 178.0
20 TraesCS7B01G144400 chr6B 92.126 127 7 3 685 810 705508866 705508990 3.300000e-40 176.0
21 TraesCS7B01G144400 chr6B 88.333 60 4 3 772 829 578459032 578459090 5.760000e-08 69.4
22 TraesCS7B01G144400 chr3B 97.391 115 2 1 679 792 178397282 178397168 9.110000e-46 195.0
23 TraesCS7B01G144400 chr3B 95.763 118 3 2 684 800 40198619 40198735 4.240000e-44 189.0
24 TraesCS7B01G144400 chr3B 86.400 125 12 4 685 805 809600390 809600267 7.240000e-27 132.0
25 TraesCS7B01G144400 chrUn 95.868 121 2 3 676 793 27987529 27987409 3.280000e-45 193.0
26 TraesCS7B01G144400 chr5B 96.552 116 2 2 684 798 90515280 90515394 1.180000e-44 191.0
27 TraesCS7B01G144400 chr2B 92.800 125 5 3 685 807 151465505 151465383 9.170000e-41 178.0
28 TraesCS7B01G144400 chr2B 84.677 124 17 2 685 807 236456025 236456147 4.360000e-24 122.0
29 TraesCS7B01G144400 chr2B 80.769 130 15 8 679 804 406717331 406717208 3.420000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G144400 chr7B 186813351 186816567 3216 False 5941 5941 100.000 1 3217 1 chr7B.!!$F1 3216
1 TraesCS7B01G144400 chr7A 226756779 226758998 2219 True 3554 3554 95.489 984 3217 1 chr7A.!!$R2 2233
2 TraesCS7B01G144400 chr7A 132412515 132413199 684 True 830 830 88.630 7 687 1 chr7A.!!$R1 680
3 TraesCS7B01G144400 chr7D 214352366 214354619 2253 True 3546 3546 95.236 984 3217 1 chr7D.!!$R2 2233
4 TraesCS7B01G144400 chr7D 133613227 133613914 687 True 876 876 89.695 5 690 1 chr7D.!!$R1 685
5 TraesCS7B01G144400 chr7D 133490582 133491271 689 False 852 852 89.001 2 690 1 chr7D.!!$F1 688
6 TraesCS7B01G144400 chr4A 54727774 54728460 686 False 664 664 84.180 2 686 1 chr4A.!!$F1 684
7 TraesCS7B01G144400 chr2D 544323298 544323982 684 True 508 508 80.146 5 686 1 chr2D.!!$R2 681
8 TraesCS7B01G144400 chr3A 543173934 543174620 686 False 409 409 77.536 2 686 1 chr3A.!!$F2 684
9 TraesCS7B01G144400 chr3A 466038608 466039245 637 False 337 337 76.434 33 671 1 chr3A.!!$F1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 905 0.035458 CTCTGTGTTCAGGGGGTGAC 59.965 60.0 0.00 0.0 41.59 3.67 F
902 908 0.182537 TGTGTTCAGGGGGTGACTTG 59.817 55.0 0.00 0.0 33.71 3.16 F
903 909 0.182775 GTGTTCAGGGGGTGACTTGT 59.817 55.0 0.00 0.0 33.71 3.16 F
1395 1401 0.249699 TTCGCGGTGTGAACATCTGT 60.250 50.0 6.13 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 1866 1.761198 GGAATAGTGGCGGTACCTTCT 59.239 52.381 10.90 5.42 40.22 2.85 R
2018 2028 2.490903 CCATCTCTTTTGCAACAGAGGG 59.509 50.000 32.05 24.82 37.69 4.30 R
2051 2061 2.851195 AGTGGCACAATCTTCGAAACT 58.149 42.857 21.41 0.00 44.16 2.66 R
3027 3099 2.860009 CATGGGATCCTGATGTCTTGG 58.140 52.381 12.58 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.608449 AGTTTTACTTGGCCGATATAGTCC 58.392 41.667 0.00 0.00 0.00 3.85
107 108 2.099592 CACCTACGGCGGAATGTAACTA 59.900 50.000 13.24 0.00 0.00 2.24
146 147 2.526304 AAGTGCAAGCTGTTCGTCTA 57.474 45.000 0.00 0.00 0.00 2.59
208 209 0.317160 CAGGCACGAGTTACAGGACA 59.683 55.000 0.00 0.00 0.00 4.02
212 213 2.480845 GCACGAGTTACAGGACAAACT 58.519 47.619 0.00 0.00 38.62 2.66
213 214 3.553508 GGCACGAGTTACAGGACAAACTA 60.554 47.826 0.00 0.00 36.10 2.24
215 216 4.689345 GCACGAGTTACAGGACAAACTATT 59.311 41.667 0.00 0.00 36.10 1.73
231 232 4.713824 ACTATTAGCTTGCTACACGTGA 57.286 40.909 25.01 4.97 0.00 4.35
302 305 0.341961 AGGAGGTGTGGCATAGGGTA 59.658 55.000 0.00 0.00 0.00 3.69
353 357 2.014128 CCAGTGGAGTCAAACGTGTTT 58.986 47.619 1.68 0.00 0.00 2.83
357 361 4.569162 CAGTGGAGTCAAACGTGTTTAAGA 59.431 41.667 0.00 0.00 0.00 2.10
472 476 3.944015 CAGAGGAATGCTAGGGTTTTCAG 59.056 47.826 0.00 0.00 0.00 3.02
503 507 3.066621 ACGAGCAAAAGACAGCAAATGAA 59.933 39.130 0.00 0.00 0.00 2.57
507 511 4.098349 AGCAAAAGACAGCAAATGAACTCA 59.902 37.500 0.00 0.00 0.00 3.41
521 525 5.774498 ATGAACTCACGCTCATGATACTA 57.226 39.130 0.00 0.00 31.04 1.82
536 540 5.425577 TGATACTAGACGAGATTGCAGAC 57.574 43.478 0.00 0.00 0.00 3.51
547 551 2.641815 AGATTGCAGACTGGAGGAAAGT 59.358 45.455 4.26 0.00 0.00 2.66
552 556 1.421646 CAGACTGGAGGAAAGTTGGGT 59.578 52.381 0.00 0.00 0.00 4.51
605 610 8.152246 GTGAGAAGTTAGTCTAGGATAGCTAGA 58.848 40.741 0.00 0.00 38.99 2.43
616 621 4.290093 AGGATAGCTAGATGTTGGTGTCA 58.710 43.478 0.00 0.00 0.00 3.58
643 649 0.752054 TGTACCCGTCCTTCGTGTTT 59.248 50.000 0.00 0.00 37.94 2.83
654 660 0.934496 TTCGTGTTTGCACCTCGAAG 59.066 50.000 14.78 0.00 42.39 3.79
675 681 5.576447 AGGGCAATCTTGTAATTAAACCG 57.424 39.130 0.00 0.00 0.00 4.44
678 684 5.066764 GGGCAATCTTGTAATTAAACCGCTA 59.933 40.000 0.00 0.00 0.00 4.26
690 696 5.526506 TTAAACCGCTATCTTCTACTCCC 57.473 43.478 0.00 0.00 0.00 4.30
691 697 3.315880 AACCGCTATCTTCTACTCCCT 57.684 47.619 0.00 0.00 0.00 4.20
692 698 2.866351 ACCGCTATCTTCTACTCCCTC 58.134 52.381 0.00 0.00 0.00 4.30
693 699 2.164338 CCGCTATCTTCTACTCCCTCC 58.836 57.143 0.00 0.00 0.00 4.30
694 700 1.807742 CGCTATCTTCTACTCCCTCCG 59.192 57.143 0.00 0.00 0.00 4.63
695 701 2.811136 CGCTATCTTCTACTCCCTCCGT 60.811 54.545 0.00 0.00 0.00 4.69
696 702 3.224269 GCTATCTTCTACTCCCTCCGTT 58.776 50.000 0.00 0.00 0.00 4.44
697 703 3.253921 GCTATCTTCTACTCCCTCCGTTC 59.746 52.174 0.00 0.00 0.00 3.95
698 704 2.140839 TCTTCTACTCCCTCCGTTCC 57.859 55.000 0.00 0.00 0.00 3.62
699 705 0.739561 CTTCTACTCCCTCCGTTCCG 59.260 60.000 0.00 0.00 0.00 4.30
700 706 0.329261 TTCTACTCCCTCCGTTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
701 707 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
702 708 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
703 709 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
704 710 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
705 711 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
706 712 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
707 713 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
708 714 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
709 715 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
710 716 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
711 717 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
712 718 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
713 719 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
714 720 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
715 721 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
716 722 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
717 723 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
718 724 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
719 725 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
720 726 3.301579 CGAATTACTTGTCGCACGTATGG 60.302 47.826 0.00 0.00 0.00 2.74
721 727 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
722 728 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
723 729 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
724 730 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
725 731 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
726 732 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
727 733 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
728 734 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
729 735 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
730 736 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
731 737 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
732 738 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
733 739 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
734 740 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
735 741 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
736 742 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
737 743 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
762 768 9.547753 TTTTAGTTCTAGATACATCCATTCAGC 57.452 33.333 0.00 0.00 0.00 4.26
763 769 5.777802 AGTTCTAGATACATCCATTCAGCG 58.222 41.667 0.00 0.00 0.00 5.18
764 770 5.536538 AGTTCTAGATACATCCATTCAGCGA 59.463 40.000 0.00 0.00 0.00 4.93
765 771 5.378292 TCTAGATACATCCATTCAGCGAC 57.622 43.478 0.00 0.00 0.00 5.19
766 772 3.018598 AGATACATCCATTCAGCGACG 57.981 47.619 0.00 0.00 0.00 5.12
767 773 2.623416 AGATACATCCATTCAGCGACGA 59.377 45.455 0.00 0.00 0.00 4.20
768 774 2.492019 TACATCCATTCAGCGACGAG 57.508 50.000 0.00 0.00 0.00 4.18
769 775 0.532573 ACATCCATTCAGCGACGAGT 59.467 50.000 0.00 0.00 0.00 4.18
770 776 1.749063 ACATCCATTCAGCGACGAGTA 59.251 47.619 0.00 0.00 0.00 2.59
771 777 2.165641 ACATCCATTCAGCGACGAGTAA 59.834 45.455 0.00 0.00 0.00 2.24
772 778 3.181475 ACATCCATTCAGCGACGAGTAAT 60.181 43.478 0.00 0.00 0.00 1.89
773 779 3.520290 TCCATTCAGCGACGAGTAATT 57.480 42.857 0.00 0.00 0.00 1.40
774 780 3.857052 TCCATTCAGCGACGAGTAATTT 58.143 40.909 0.00 0.00 0.00 1.82
775 781 3.616821 TCCATTCAGCGACGAGTAATTTG 59.383 43.478 0.00 0.00 0.00 2.32
776 782 3.242413 CCATTCAGCGACGAGTAATTTGG 60.242 47.826 0.00 0.00 0.00 3.28
777 783 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
778 784 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
779 785 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
780 786 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
781 787 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
782 788 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
783 789 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
784 790 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
785 791 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
786 792 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
787 793 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
788 794 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
789 795 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
790 796 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
791 797 5.901276 AGTAATTTGGAACGGAGGGAGTATA 59.099 40.000 0.00 0.00 0.00 1.47
792 798 5.703730 AATTTGGAACGGAGGGAGTATAA 57.296 39.130 0.00 0.00 0.00 0.98
793 799 5.703730 ATTTGGAACGGAGGGAGTATAAA 57.296 39.130 0.00 0.00 0.00 1.40
794 800 4.748277 TTGGAACGGAGGGAGTATAAAG 57.252 45.455 0.00 0.00 0.00 1.85
795 801 2.433239 TGGAACGGAGGGAGTATAAAGC 59.567 50.000 0.00 0.00 0.00 3.51
796 802 2.699321 GGAACGGAGGGAGTATAAAGCT 59.301 50.000 0.00 0.00 0.00 3.74
797 803 3.893813 GGAACGGAGGGAGTATAAAGCTA 59.106 47.826 0.00 0.00 0.00 3.32
798 804 4.527427 GGAACGGAGGGAGTATAAAGCTAT 59.473 45.833 0.00 0.00 0.00 2.97
799 805 5.470047 AACGGAGGGAGTATAAAGCTATG 57.530 43.478 0.00 0.00 0.00 2.23
800 806 3.833070 ACGGAGGGAGTATAAAGCTATGG 59.167 47.826 0.00 0.00 0.00 2.74
801 807 3.833070 CGGAGGGAGTATAAAGCTATGGT 59.167 47.826 0.00 0.00 0.00 3.55
802 808 5.014858 CGGAGGGAGTATAAAGCTATGGTA 58.985 45.833 0.00 0.00 0.00 3.25
803 809 5.105837 CGGAGGGAGTATAAAGCTATGGTAC 60.106 48.000 0.00 0.00 0.00 3.34
804 810 6.017830 GGAGGGAGTATAAAGCTATGGTACT 58.982 44.000 0.00 0.00 0.00 2.73
805 811 6.153170 GGAGGGAGTATAAAGCTATGGTACTC 59.847 46.154 14.99 14.99 40.14 2.59
807 813 5.952033 GGAGTATAAAGCTATGGTACTCCG 58.048 45.833 21.65 0.00 46.54 4.63
808 814 5.476254 GGAGTATAAAGCTATGGTACTCCGT 59.524 44.000 21.65 0.00 46.54 4.69
809 815 6.015603 GGAGTATAAAGCTATGGTACTCCGTT 60.016 42.308 21.65 0.00 46.54 4.44
810 816 6.746120 AGTATAAAGCTATGGTACTCCGTTG 58.254 40.000 0.00 0.00 36.30 4.10
811 817 2.981859 AAGCTATGGTACTCCGTTGG 57.018 50.000 0.00 0.00 36.30 3.77
812 818 0.464452 AGCTATGGTACTCCGTTGGC 59.536 55.000 0.00 0.00 36.30 4.52
813 819 0.874607 GCTATGGTACTCCGTTGGCG 60.875 60.000 0.00 0.00 36.30 5.69
814 820 0.458669 CTATGGTACTCCGTTGGCGT 59.541 55.000 0.00 0.00 36.30 5.68
815 821 1.677576 CTATGGTACTCCGTTGGCGTA 59.322 52.381 0.00 0.00 36.30 4.42
816 822 0.174162 ATGGTACTCCGTTGGCGTAC 59.826 55.000 7.44 7.44 41.53 3.67
817 823 0.895100 TGGTACTCCGTTGGCGTACT 60.895 55.000 13.90 0.00 41.83 2.73
818 824 0.179153 GGTACTCCGTTGGCGTACTC 60.179 60.000 13.90 3.50 41.83 2.59
819 825 0.807496 GTACTCCGTTGGCGTACTCT 59.193 55.000 8.49 0.00 39.81 3.24
820 826 1.089920 TACTCCGTTGGCGTACTCTC 58.910 55.000 0.00 0.00 36.15 3.20
821 827 1.226323 CTCCGTTGGCGTACTCTCG 60.226 63.158 0.00 0.00 36.15 4.04
822 828 1.642037 CTCCGTTGGCGTACTCTCGA 61.642 60.000 0.00 0.00 36.15 4.04
823 829 1.210931 CCGTTGGCGTACTCTCGAA 59.789 57.895 0.00 0.00 36.15 3.71
824 830 0.387622 CCGTTGGCGTACTCTCGAAA 60.388 55.000 0.00 0.00 36.15 3.46
825 831 1.411394 CGTTGGCGTACTCTCGAAAA 58.589 50.000 0.00 0.00 0.00 2.29
826 832 1.788308 CGTTGGCGTACTCTCGAAAAA 59.212 47.619 0.00 0.00 0.00 1.94
848 854 4.976224 AATCAAAGTATTAACCCACCGC 57.024 40.909 0.00 0.00 0.00 5.68
849 855 2.713877 TCAAAGTATTAACCCACCGCC 58.286 47.619 0.00 0.00 0.00 6.13
850 856 1.746787 CAAAGTATTAACCCACCGCCC 59.253 52.381 0.00 0.00 0.00 6.13
851 857 1.292085 AAGTATTAACCCACCGCCCT 58.708 50.000 0.00 0.00 0.00 5.19
852 858 0.544697 AGTATTAACCCACCGCCCTG 59.455 55.000 0.00 0.00 0.00 4.45
853 859 0.253894 GTATTAACCCACCGCCCTGT 59.746 55.000 0.00 0.00 0.00 4.00
854 860 0.253610 TATTAACCCACCGCCCTGTG 59.746 55.000 0.00 0.00 35.98 3.66
855 861 1.785353 ATTAACCCACCGCCCTGTGT 61.785 55.000 0.00 0.00 34.35 3.72
856 862 1.126329 TTAACCCACCGCCCTGTGTA 61.126 55.000 0.00 0.00 34.35 2.90
857 863 1.829523 TAACCCACCGCCCTGTGTAC 61.830 60.000 0.00 0.00 34.35 2.90
858 864 4.404098 CCCACCGCCCTGTGTACC 62.404 72.222 0.00 0.00 34.35 3.34
859 865 3.319198 CCACCGCCCTGTGTACCT 61.319 66.667 0.00 0.00 34.35 3.08
860 866 2.264794 CACCGCCCTGTGTACCTC 59.735 66.667 0.00 0.00 0.00 3.85
861 867 2.203728 ACCGCCCTGTGTACCTCA 60.204 61.111 0.00 0.00 0.00 3.86
862 868 1.839747 ACCGCCCTGTGTACCTCAA 60.840 57.895 0.00 0.00 0.00 3.02
863 869 1.373435 CCGCCCTGTGTACCTCAAA 59.627 57.895 0.00 0.00 0.00 2.69
864 870 0.250553 CCGCCCTGTGTACCTCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
865 871 1.156736 CGCCCTGTGTACCTCAAAAG 58.843 55.000 0.00 0.00 0.00 2.27
866 872 1.270625 CGCCCTGTGTACCTCAAAAGA 60.271 52.381 0.00 0.00 0.00 2.52
867 873 2.808933 CGCCCTGTGTACCTCAAAAGAA 60.809 50.000 0.00 0.00 0.00 2.52
868 874 3.219281 GCCCTGTGTACCTCAAAAGAAA 58.781 45.455 0.00 0.00 0.00 2.52
869 875 3.634910 GCCCTGTGTACCTCAAAAGAAAA 59.365 43.478 0.00 0.00 0.00 2.29
870 876 4.098807 GCCCTGTGTACCTCAAAAGAAAAA 59.901 41.667 0.00 0.00 0.00 1.94
894 900 1.757306 ACAGCTCTGTGTTCAGGGG 59.243 57.895 1.15 0.00 42.08 4.79
895 901 1.002868 CAGCTCTGTGTTCAGGGGG 60.003 63.158 0.00 0.00 42.08 5.40
896 902 1.462238 AGCTCTGTGTTCAGGGGGT 60.462 57.895 0.00 0.00 42.08 4.95
897 903 1.302832 GCTCTGTGTTCAGGGGGTG 60.303 63.158 0.00 0.00 42.08 4.61
898 904 1.768684 GCTCTGTGTTCAGGGGGTGA 61.769 60.000 0.00 0.00 42.08 4.02
899 905 0.035458 CTCTGTGTTCAGGGGGTGAC 59.965 60.000 0.00 0.00 41.59 3.67
900 906 0.399949 TCTGTGTTCAGGGGGTGACT 60.400 55.000 0.00 0.00 41.59 3.41
901 907 0.474184 CTGTGTTCAGGGGGTGACTT 59.526 55.000 0.00 0.00 37.97 3.01
902 908 0.182537 TGTGTTCAGGGGGTGACTTG 59.817 55.000 0.00 0.00 33.71 3.16
903 909 0.182775 GTGTTCAGGGGGTGACTTGT 59.817 55.000 0.00 0.00 33.71 3.16
904 910 0.923358 TGTTCAGGGGGTGACTTGTT 59.077 50.000 0.00 0.00 33.71 2.83
905 911 1.286553 TGTTCAGGGGGTGACTTGTTT 59.713 47.619 0.00 0.00 33.71 2.83
906 912 2.291930 TGTTCAGGGGGTGACTTGTTTT 60.292 45.455 0.00 0.00 33.71 2.43
907 913 2.764010 GTTCAGGGGGTGACTTGTTTTT 59.236 45.455 0.00 0.00 33.71 1.94
908 914 3.955524 TCAGGGGGTGACTTGTTTTTA 57.044 42.857 0.00 0.00 0.00 1.52
909 915 4.252570 TCAGGGGGTGACTTGTTTTTAA 57.747 40.909 0.00 0.00 0.00 1.52
910 916 3.955551 TCAGGGGGTGACTTGTTTTTAAC 59.044 43.478 0.00 0.00 0.00 2.01
911 917 2.953648 AGGGGGTGACTTGTTTTTAACG 59.046 45.455 0.00 0.00 0.00 3.18
912 918 2.950975 GGGGGTGACTTGTTTTTAACGA 59.049 45.455 0.00 0.00 0.00 3.85
913 919 3.004002 GGGGGTGACTTGTTTTTAACGAG 59.996 47.826 5.47 5.47 46.36 4.18
914 920 3.878699 GGGGTGACTTGTTTTTAACGAGA 59.121 43.478 12.53 0.00 44.20 4.04
915 921 4.260907 GGGGTGACTTGTTTTTAACGAGAC 60.261 45.833 12.53 7.76 44.20 3.36
916 922 4.260907 GGGTGACTTGTTTTTAACGAGACC 60.261 45.833 12.53 10.15 44.20 3.85
917 923 4.260907 GGTGACTTGTTTTTAACGAGACCC 60.261 45.833 12.53 7.17 44.20 4.46
918 924 4.573607 GTGACTTGTTTTTAACGAGACCCT 59.426 41.667 12.53 0.00 44.20 4.34
919 925 4.573201 TGACTTGTTTTTAACGAGACCCTG 59.427 41.667 12.53 0.00 44.20 4.45
920 926 4.773013 ACTTGTTTTTAACGAGACCCTGA 58.227 39.130 12.53 0.00 44.20 3.86
921 927 5.374071 ACTTGTTTTTAACGAGACCCTGAT 58.626 37.500 12.53 0.00 44.20 2.90
922 928 5.826208 ACTTGTTTTTAACGAGACCCTGATT 59.174 36.000 12.53 0.00 44.20 2.57
923 929 6.320418 ACTTGTTTTTAACGAGACCCTGATTT 59.680 34.615 12.53 0.00 44.20 2.17
924 930 6.702716 TGTTTTTAACGAGACCCTGATTTT 57.297 33.333 0.00 0.00 0.00 1.82
925 931 7.804843 TGTTTTTAACGAGACCCTGATTTTA 57.195 32.000 0.00 0.00 0.00 1.52
926 932 8.223177 TGTTTTTAACGAGACCCTGATTTTAA 57.777 30.769 0.00 0.00 0.00 1.52
927 933 8.852135 TGTTTTTAACGAGACCCTGATTTTAAT 58.148 29.630 0.00 0.00 0.00 1.40
928 934 9.687210 GTTTTTAACGAGACCCTGATTTTAATT 57.313 29.630 0.00 0.00 0.00 1.40
930 936 9.902196 TTTTAACGAGACCCTGATTTTAATTTC 57.098 29.630 0.00 0.00 0.00 2.17
931 937 6.510879 AACGAGACCCTGATTTTAATTTCC 57.489 37.500 0.00 0.00 0.00 3.13
932 938 5.566469 ACGAGACCCTGATTTTAATTTCCA 58.434 37.500 0.00 0.00 0.00 3.53
933 939 5.414765 ACGAGACCCTGATTTTAATTTCCAC 59.585 40.000 0.00 0.00 0.00 4.02
934 940 5.414454 CGAGACCCTGATTTTAATTTCCACA 59.586 40.000 0.00 0.00 0.00 4.17
935 941 6.072175 CGAGACCCTGATTTTAATTTCCACAA 60.072 38.462 0.00 0.00 0.00 3.33
936 942 6.993079 AGACCCTGATTTTAATTTCCACAAC 58.007 36.000 0.00 0.00 0.00 3.32
937 943 5.778862 ACCCTGATTTTAATTTCCACAACG 58.221 37.500 0.00 0.00 0.00 4.10
938 944 5.303333 ACCCTGATTTTAATTTCCACAACGT 59.697 36.000 0.00 0.00 0.00 3.99
939 945 5.633182 CCCTGATTTTAATTTCCACAACGTG 59.367 40.000 0.00 0.00 0.00 4.49
940 946 5.118510 CCTGATTTTAATTTCCACAACGTGC 59.881 40.000 0.00 0.00 31.34 5.34
941 947 4.677378 TGATTTTAATTTCCACAACGTGCG 59.323 37.500 0.00 0.00 31.34 5.34
942 948 3.694535 TTTAATTTCCACAACGTGCGT 57.305 38.095 0.00 0.00 31.34 5.24
943 949 2.672188 TAATTTCCACAACGTGCGTG 57.328 45.000 10.63 10.63 31.34 5.34
947 953 2.663520 CCACAACGTGCGTGGCTA 60.664 61.111 20.79 0.00 46.94 3.93
948 954 2.549282 CACAACGTGCGTGGCTAC 59.451 61.111 9.89 0.00 0.00 3.58
949 955 2.663852 ACAACGTGCGTGGCTACC 60.664 61.111 0.00 0.00 0.00 3.18
950 956 3.419759 CAACGTGCGTGGCTACCC 61.420 66.667 0.00 0.00 0.00 3.69
951 957 3.931247 AACGTGCGTGGCTACCCA 61.931 61.111 0.00 0.00 39.32 4.51
952 958 3.463728 AACGTGCGTGGCTACCCAA 62.464 57.895 0.00 0.00 44.33 4.12
953 959 3.419759 CGTGCGTGGCTACCCAAC 61.420 66.667 0.00 0.00 44.33 3.77
954 960 2.032071 GTGCGTGGCTACCCAACT 59.968 61.111 0.00 0.00 44.33 3.16
955 961 2.033194 GTGCGTGGCTACCCAACTC 61.033 63.158 0.00 0.00 44.33 3.01
956 962 2.436115 GCGTGGCTACCCAACTCC 60.436 66.667 0.00 0.00 44.33 3.85
957 963 2.125673 CGTGGCTACCCAACTCCG 60.126 66.667 0.00 0.00 44.33 4.63
958 964 2.436115 GTGGCTACCCAACTCCGC 60.436 66.667 0.00 0.00 44.33 5.54
959 965 2.606519 TGGCTACCCAACTCCGCT 60.607 61.111 0.00 0.00 38.46 5.52
960 966 2.221299 TGGCTACCCAACTCCGCTT 61.221 57.895 0.00 0.00 38.46 4.68
961 967 1.002502 GGCTACCCAACTCCGCTTT 60.003 57.895 0.00 0.00 0.00 3.51
962 968 1.025113 GGCTACCCAACTCCGCTTTC 61.025 60.000 0.00 0.00 0.00 2.62
963 969 1.025113 GCTACCCAACTCCGCTTTCC 61.025 60.000 0.00 0.00 0.00 3.13
964 970 0.323629 CTACCCAACTCCGCTTTCCA 59.676 55.000 0.00 0.00 0.00 3.53
965 971 0.323629 TACCCAACTCCGCTTTCCAG 59.676 55.000 0.00 0.00 0.00 3.86
966 972 2.335712 CCCAACTCCGCTTTCCAGC 61.336 63.158 0.00 0.00 43.41 4.85
967 973 1.302832 CCAACTCCGCTTTCCAGCT 60.303 57.895 0.00 0.00 44.85 4.24
968 974 1.301677 CCAACTCCGCTTTCCAGCTC 61.302 60.000 0.00 0.00 44.85 4.09
969 975 1.003233 AACTCCGCTTTCCAGCTCC 60.003 57.895 0.00 0.00 44.85 4.70
970 976 2.124942 CTCCGCTTTCCAGCTCCC 60.125 66.667 0.00 0.00 44.85 4.30
971 977 3.689002 CTCCGCTTTCCAGCTCCCC 62.689 68.421 0.00 0.00 44.85 4.81
972 978 3.721706 CCGCTTTCCAGCTCCCCT 61.722 66.667 0.00 0.00 44.85 4.79
973 979 2.124942 CGCTTTCCAGCTCCCCTC 60.125 66.667 0.00 0.00 44.85 4.30
974 980 2.959484 CGCTTTCCAGCTCCCCTCA 61.959 63.158 0.00 0.00 44.85 3.86
975 981 1.380302 GCTTTCCAGCTCCCCTCAA 59.620 57.895 0.00 0.00 43.51 3.02
976 982 0.251341 GCTTTCCAGCTCCCCTCAAA 60.251 55.000 0.00 0.00 43.51 2.69
977 983 1.823250 GCTTTCCAGCTCCCCTCAAAA 60.823 52.381 0.00 0.00 43.51 2.44
978 984 2.597455 CTTTCCAGCTCCCCTCAAAAA 58.403 47.619 0.00 0.00 0.00 1.94
1395 1401 0.249699 TTCGCGGTGTGAACATCTGT 60.250 50.000 6.13 0.00 0.00 3.41
1396 1402 0.666274 TCGCGGTGTGAACATCTGTC 60.666 55.000 6.13 0.00 0.00 3.51
1413 1421 5.934402 TCTGTCTAGTGATTTCCCCTTAC 57.066 43.478 0.00 0.00 0.00 2.34
1431 1439 5.776716 CCCTTACTCAACGGGTCCTATATTA 59.223 44.000 0.00 0.00 33.16 0.98
1432 1440 6.439692 CCCTTACTCAACGGGTCCTATATTAT 59.560 42.308 0.00 0.00 33.16 1.28
1433 1441 7.038516 CCCTTACTCAACGGGTCCTATATTATT 60.039 40.741 0.00 0.00 33.16 1.40
1469 1477 6.024049 GGAAATACTTGTCAAATTGAGCTCG 58.976 40.000 9.64 0.00 0.00 5.03
1487 1495 6.371271 TGAGCTCGAATGTGTGATTATTTTGA 59.629 34.615 9.64 0.00 0.00 2.69
1607 1617 8.702163 ACCTTGTGCATTTAATTATTGTAAGC 57.298 30.769 0.00 0.00 0.00 3.09
1730 1740 1.930503 CGTCGCCAAGCATGTATGTAA 59.069 47.619 0.00 0.00 0.00 2.41
1791 1801 0.394938 TTTCGTCTGTTGCTGGCCTA 59.605 50.000 3.32 0.00 0.00 3.93
1839 1849 2.499693 TGGATACGCATCTTCCAAGTCA 59.500 45.455 0.00 0.00 36.62 3.41
1842 1852 0.322975 ACGCATCTTCCAAGTCAGCT 59.677 50.000 0.00 0.00 0.00 4.24
1856 1866 1.875514 GTCAGCTGTGCATTCTGTCAA 59.124 47.619 14.67 0.00 0.00 3.18
1976 1986 4.857509 AGGAGCGTATGGAATTAGAGTC 57.142 45.455 0.00 0.00 0.00 3.36
2018 2028 7.255277 GGAATATTCCAGTCAGAAATAACTGCC 60.255 40.741 26.61 0.00 46.76 4.85
2353 2363 6.125327 ACACAATCGTTTTGTACAACATGA 57.875 33.333 16.78 16.78 0.00 3.07
2372 2382 5.298777 ACATGATAAGCTTCTGAAGATTGCC 59.701 40.000 26.19 18.37 37.72 4.52
2421 2431 0.392998 ATACCCTTGCAGCCACTTCG 60.393 55.000 0.00 0.00 0.00 3.79
2433 2443 4.495844 GCAGCCACTTCGAAATATTACACC 60.496 45.833 0.00 0.00 0.00 4.16
2522 2532 8.237811 TGATGTTCTATATGCAAGTCACTAGA 57.762 34.615 0.00 0.00 0.00 2.43
2708 2753 5.041287 GCATTCATTGGAGATGTTGACATG 58.959 41.667 0.57 0.00 36.57 3.21
2709 2754 5.393787 GCATTCATTGGAGATGTTGACATGT 60.394 40.000 0.00 0.00 36.57 3.21
2710 2755 6.627243 CATTCATTGGAGATGTTGACATGTT 58.373 36.000 0.00 0.00 36.57 2.71
2711 2756 5.632244 TCATTGGAGATGTTGACATGTTG 57.368 39.130 0.00 0.00 36.57 3.33
2712 2757 5.072055 TCATTGGAGATGTTGACATGTTGT 58.928 37.500 0.00 0.00 36.57 3.32
2713 2758 6.237154 TCATTGGAGATGTTGACATGTTGTA 58.763 36.000 0.00 0.00 36.57 2.41
2714 2759 6.372381 TCATTGGAGATGTTGACATGTTGTAG 59.628 38.462 0.00 0.00 36.57 2.74
2715 2760 5.482163 TGGAGATGTTGACATGTTGTAGA 57.518 39.130 0.00 0.00 36.57 2.59
2716 2761 6.053632 TGGAGATGTTGACATGTTGTAGAT 57.946 37.500 0.00 0.00 36.57 1.98
2717 2762 5.876460 TGGAGATGTTGACATGTTGTAGATG 59.124 40.000 0.00 0.00 36.57 2.90
2718 2763 5.220739 GGAGATGTTGACATGTTGTAGATGC 60.221 44.000 0.00 0.00 36.57 3.91
2719 2764 5.494724 AGATGTTGACATGTTGTAGATGCT 58.505 37.500 0.00 0.00 36.57 3.79
2720 2765 6.643388 AGATGTTGACATGTTGTAGATGCTA 58.357 36.000 0.00 0.00 36.57 3.49
2721 2766 6.536582 AGATGTTGACATGTTGTAGATGCTAC 59.463 38.462 0.00 0.00 36.57 3.58
2722 2767 4.625311 TGTTGACATGTTGTAGATGCTACG 59.375 41.667 0.00 0.00 0.00 3.51
2723 2768 3.780902 TGACATGTTGTAGATGCTACGG 58.219 45.455 0.00 0.00 0.00 4.02
2724 2769 3.445805 TGACATGTTGTAGATGCTACGGA 59.554 43.478 0.00 0.00 0.00 4.69
2725 2770 4.081917 TGACATGTTGTAGATGCTACGGAA 60.082 41.667 0.00 0.00 0.00 4.30
2726 2771 4.827692 ACATGTTGTAGATGCTACGGAAA 58.172 39.130 0.00 0.00 0.00 3.13
2727 2772 5.428253 ACATGTTGTAGATGCTACGGAAAT 58.572 37.500 0.00 0.00 0.00 2.17
2728 2773 6.578944 ACATGTTGTAGATGCTACGGAAATA 58.421 36.000 0.00 0.00 0.00 1.40
2729 2774 7.217200 ACATGTTGTAGATGCTACGGAAATAT 58.783 34.615 0.00 0.00 0.00 1.28
2730 2775 7.171508 ACATGTTGTAGATGCTACGGAAATATG 59.828 37.037 0.00 0.00 0.00 1.78
2731 2776 5.989168 TGTTGTAGATGCTACGGAAATATGG 59.011 40.000 0.00 0.00 0.00 2.74
2732 2777 6.183360 TGTTGTAGATGCTACGGAAATATGGA 60.183 38.462 0.00 0.00 0.00 3.41
2733 2778 6.605471 TGTAGATGCTACGGAAATATGGAT 57.395 37.500 0.00 0.00 0.00 3.41
2734 2779 7.004555 TGTAGATGCTACGGAAATATGGATT 57.995 36.000 0.00 0.00 0.00 3.01
2735 2780 8.129496 TGTAGATGCTACGGAAATATGGATTA 57.871 34.615 0.00 0.00 0.00 1.75
2736 2781 8.033038 TGTAGATGCTACGGAAATATGGATTAC 58.967 37.037 0.00 0.00 0.00 1.89
2737 2782 7.004555 AGATGCTACGGAAATATGGATTACA 57.995 36.000 0.00 0.00 0.00 2.41
2738 2783 7.624549 AGATGCTACGGAAATATGGATTACAT 58.375 34.615 0.00 0.00 43.68 2.29
2882 2954 4.786507 TGATTTCGCAGTTCATCAAACAG 58.213 39.130 0.00 0.00 40.56 3.16
2914 2986 2.289010 CCATGCTGGAACAAAAACCTCC 60.289 50.000 0.00 0.00 40.96 4.30
2921 2993 5.237236 TGGAACAAAAACCTCCCTAGTAG 57.763 43.478 0.00 0.00 31.92 2.57
2961 3033 3.004315 AGACATACAAAACTTTGGTGCGG 59.996 43.478 7.09 0.00 42.34 5.69
3027 3099 6.649141 TGACATCTTCACTAATGTTACACACC 59.351 38.462 0.00 0.00 36.28 4.16
3121 3193 2.827921 CAAGGTTTTGCCAGGAGCTATT 59.172 45.455 0.00 0.00 44.23 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.088905 ACTATATCGGCCAAGTAAAACTATCG 58.911 38.462 2.24 0.00 0.00 2.92
23 24 2.203728 TGTAGGTGCCCGTGGACT 60.204 61.111 0.00 0.00 0.00 3.85
107 108 4.400961 GCGGTGCCCAGCTTCTCT 62.401 66.667 0.00 0.00 0.00 3.10
170 171 1.261480 GGCTCTCCTGTCTGAAGTCA 58.739 55.000 0.00 0.00 0.00 3.41
208 209 5.475719 TCACGTGTAGCAAGCTAATAGTTT 58.524 37.500 16.51 0.00 0.00 2.66
212 213 3.802139 GCATCACGTGTAGCAAGCTAATA 59.198 43.478 23.21 0.00 0.00 0.98
213 214 2.609459 GCATCACGTGTAGCAAGCTAAT 59.391 45.455 23.21 2.29 0.00 1.73
215 216 1.067213 TGCATCACGTGTAGCAAGCTA 60.067 47.619 26.69 10.28 33.48 3.32
231 232 0.250467 ACGTTGTCTTCTGCCTGCAT 60.250 50.000 0.00 0.00 0.00 3.96
296 299 9.166222 TCAATCAAGATAAGGCTAAATACCCTA 57.834 33.333 0.00 0.00 0.00 3.53
302 305 6.238484 GCACGTCAATCAAGATAAGGCTAAAT 60.238 38.462 0.00 0.00 0.00 1.40
316 319 1.003839 GGTCCCTGCACGTCAATCA 60.004 57.895 0.00 0.00 0.00 2.57
353 357 0.037326 CTGCGAGCCACCAGTTCTTA 60.037 55.000 0.00 0.00 0.00 2.10
357 361 2.281070 CACTGCGAGCCACCAGTT 60.281 61.111 0.00 0.00 40.12 3.16
472 476 1.806542 TCTTTTGCTCGTTGATCCTGC 59.193 47.619 0.00 0.00 0.00 4.85
503 507 3.248841 CGTCTAGTATCATGAGCGTGAGT 59.751 47.826 0.09 0.00 0.00 3.41
507 511 3.729966 TCTCGTCTAGTATCATGAGCGT 58.270 45.455 0.09 0.00 0.00 5.07
521 525 1.476085 CTCCAGTCTGCAATCTCGTCT 59.524 52.381 0.00 0.00 0.00 4.18
536 540 1.963515 CCAAACCCAACTTTCCTCCAG 59.036 52.381 0.00 0.00 0.00 3.86
547 551 2.281208 CTCCGACGCCAAACCCAA 60.281 61.111 0.00 0.00 0.00 4.12
552 556 1.180456 TGTAGTCCTCCGACGCCAAA 61.180 55.000 0.00 0.00 44.28 3.28
605 610 3.554934 ACAACTCACATGACACCAACAT 58.445 40.909 0.00 0.00 0.00 2.71
616 621 1.640917 AGGACGGGTACAACTCACAT 58.359 50.000 0.00 0.00 0.00 3.21
643 649 1.377202 GATTGCCCTTCGAGGTGCA 60.377 57.895 0.00 0.00 38.96 4.57
654 660 4.109766 GCGGTTTAATTACAAGATTGCCC 58.890 43.478 0.00 0.00 0.00 5.36
675 681 2.866351 ACGGAGGGAGTAGAAGATAGC 58.134 52.381 0.00 0.00 0.00 2.97
678 684 2.668625 GGAACGGAGGGAGTAGAAGAT 58.331 52.381 0.00 0.00 0.00 2.40
694 700 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
695 701 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
696 702 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
697 703 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
698 704 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
699 705 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
700 706 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
701 707 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
702 708 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
703 709 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
704 710 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
705 711 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
706 712 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
707 713 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
708 714 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
709 715 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
710 716 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
711 717 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
736 742 9.547753 GCTGAATGGATGTATCTAGAACTAAAA 57.452 33.333 0.00 0.00 0.00 1.52
737 743 7.867909 CGCTGAATGGATGTATCTAGAACTAAA 59.132 37.037 0.00 0.00 0.00 1.85
738 744 7.230712 TCGCTGAATGGATGTATCTAGAACTAA 59.769 37.037 0.00 0.00 0.00 2.24
739 745 6.715264 TCGCTGAATGGATGTATCTAGAACTA 59.285 38.462 0.00 0.00 0.00 2.24
740 746 5.536538 TCGCTGAATGGATGTATCTAGAACT 59.463 40.000 0.00 0.00 0.00 3.01
741 747 5.631512 GTCGCTGAATGGATGTATCTAGAAC 59.368 44.000 0.00 0.00 0.00 3.01
742 748 5.562890 CGTCGCTGAATGGATGTATCTAGAA 60.563 44.000 0.00 0.00 0.00 2.10
743 749 4.083271 CGTCGCTGAATGGATGTATCTAGA 60.083 45.833 0.00 0.00 0.00 2.43
744 750 4.083271 TCGTCGCTGAATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
745 751 3.818773 TCGTCGCTGAATGGATGTATCTA 59.181 43.478 0.00 0.00 0.00 1.98
746 752 2.623416 TCGTCGCTGAATGGATGTATCT 59.377 45.455 0.00 0.00 0.00 1.98
747 753 2.983136 CTCGTCGCTGAATGGATGTATC 59.017 50.000 0.00 0.00 0.00 2.24
748 754 2.362397 ACTCGTCGCTGAATGGATGTAT 59.638 45.455 0.00 0.00 0.00 2.29
749 755 1.749063 ACTCGTCGCTGAATGGATGTA 59.251 47.619 0.00 0.00 0.00 2.29
750 756 0.532573 ACTCGTCGCTGAATGGATGT 59.467 50.000 0.00 0.00 0.00 3.06
751 757 2.492019 TACTCGTCGCTGAATGGATG 57.508 50.000 0.00 0.00 0.00 3.51
752 758 3.735237 ATTACTCGTCGCTGAATGGAT 57.265 42.857 0.00 0.00 0.00 3.41
753 759 3.520290 AATTACTCGTCGCTGAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
754 760 3.242413 CCAAATTACTCGTCGCTGAATGG 60.242 47.826 0.00 0.00 0.00 3.16
755 761 3.616821 TCCAAATTACTCGTCGCTGAATG 59.383 43.478 0.00 0.00 0.00 2.67
756 762 3.857052 TCCAAATTACTCGTCGCTGAAT 58.143 40.909 0.00 0.00 0.00 2.57
757 763 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
758 764 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
759 765 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
760 766 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
761 767 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
762 768 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
763 769 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
764 770 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
765 771 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
766 772 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
767 773 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
768 774 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
769 775 6.811634 TTATACTCCCTCCGTTCCAAATTA 57.188 37.500 0.00 0.00 0.00 1.40
770 776 5.703730 TTATACTCCCTCCGTTCCAAATT 57.296 39.130 0.00 0.00 0.00 1.82
771 777 5.681639 CTTTATACTCCCTCCGTTCCAAAT 58.318 41.667 0.00 0.00 0.00 2.32
772 778 4.624604 GCTTTATACTCCCTCCGTTCCAAA 60.625 45.833 0.00 0.00 0.00 3.28
773 779 3.118519 GCTTTATACTCCCTCCGTTCCAA 60.119 47.826 0.00 0.00 0.00 3.53
774 780 2.433239 GCTTTATACTCCCTCCGTTCCA 59.567 50.000 0.00 0.00 0.00 3.53
775 781 2.699321 AGCTTTATACTCCCTCCGTTCC 59.301 50.000 0.00 0.00 0.00 3.62
776 782 5.471257 CATAGCTTTATACTCCCTCCGTTC 58.529 45.833 0.00 0.00 0.00 3.95
777 783 4.283722 CCATAGCTTTATACTCCCTCCGTT 59.716 45.833 0.00 0.00 0.00 4.44
778 784 3.833070 CCATAGCTTTATACTCCCTCCGT 59.167 47.826 0.00 0.00 0.00 4.69
779 785 3.833070 ACCATAGCTTTATACTCCCTCCG 59.167 47.826 0.00 0.00 0.00 4.63
780 786 6.017830 AGTACCATAGCTTTATACTCCCTCC 58.982 44.000 0.00 0.00 0.00 4.30
781 787 7.160547 GAGTACCATAGCTTTATACTCCCTC 57.839 44.000 12.87 0.00 37.05 4.30
785 791 6.572167 ACGGAGTACCATAGCTTTATACTC 57.428 41.667 14.44 14.44 41.94 2.59
786 792 6.239232 CCAACGGAGTACCATAGCTTTATACT 60.239 42.308 0.00 0.00 45.00 2.12
787 793 5.924825 CCAACGGAGTACCATAGCTTTATAC 59.075 44.000 0.00 0.00 45.00 1.47
788 794 5.510179 GCCAACGGAGTACCATAGCTTTATA 60.510 44.000 0.00 0.00 45.00 0.98
789 795 4.742743 GCCAACGGAGTACCATAGCTTTAT 60.743 45.833 0.00 0.00 45.00 1.40
790 796 3.431207 GCCAACGGAGTACCATAGCTTTA 60.431 47.826 0.00 0.00 45.00 1.85
791 797 2.679930 GCCAACGGAGTACCATAGCTTT 60.680 50.000 0.00 0.00 45.00 3.51
792 798 1.134491 GCCAACGGAGTACCATAGCTT 60.134 52.381 0.00 0.00 45.00 3.74
793 799 0.464452 GCCAACGGAGTACCATAGCT 59.536 55.000 0.00 0.00 45.00 3.32
794 800 0.874607 CGCCAACGGAGTACCATAGC 60.875 60.000 0.00 0.00 45.00 2.97
795 801 0.458669 ACGCCAACGGAGTACCATAG 59.541 55.000 0.00 0.00 45.00 2.23
796 802 1.761449 TACGCCAACGGAGTACCATA 58.239 50.000 0.00 0.00 45.00 2.74
797 803 2.582272 TACGCCAACGGAGTACCAT 58.418 52.632 0.00 0.00 45.00 3.55
798 804 4.093966 TACGCCAACGGAGTACCA 57.906 55.556 0.00 0.00 45.00 3.25
801 807 1.089920 GAGAGTACGCCAACGGAGTA 58.910 55.000 0.00 0.00 45.00 2.59
803 809 1.226323 CGAGAGTACGCCAACGGAG 60.226 63.158 0.00 0.00 46.04 4.63
804 810 1.236616 TTCGAGAGTACGCCAACGGA 61.237 55.000 0.00 0.00 46.04 4.69
805 811 0.387622 TTTCGAGAGTACGCCAACGG 60.388 55.000 0.00 0.00 46.04 4.44
824 830 6.160684 GCGGTGGGTTAATACTTTGATTTTT 58.839 36.000 0.00 0.00 0.00 1.94
825 831 5.336929 GGCGGTGGGTTAATACTTTGATTTT 60.337 40.000 0.00 0.00 0.00 1.82
826 832 4.158949 GGCGGTGGGTTAATACTTTGATTT 59.841 41.667 0.00 0.00 0.00 2.17
827 833 3.697542 GGCGGTGGGTTAATACTTTGATT 59.302 43.478 0.00 0.00 0.00 2.57
828 834 3.284617 GGCGGTGGGTTAATACTTTGAT 58.715 45.455 0.00 0.00 0.00 2.57
829 835 2.618559 GGGCGGTGGGTTAATACTTTGA 60.619 50.000 0.00 0.00 0.00 2.69
830 836 1.746787 GGGCGGTGGGTTAATACTTTG 59.253 52.381 0.00 0.00 0.00 2.77
831 837 1.637035 AGGGCGGTGGGTTAATACTTT 59.363 47.619 0.00 0.00 0.00 2.66
832 838 1.064979 CAGGGCGGTGGGTTAATACTT 60.065 52.381 0.00 0.00 0.00 2.24
833 839 0.544697 CAGGGCGGTGGGTTAATACT 59.455 55.000 0.00 0.00 0.00 2.12
834 840 0.253894 ACAGGGCGGTGGGTTAATAC 59.746 55.000 0.00 0.00 0.00 1.89
835 841 0.253610 CACAGGGCGGTGGGTTAATA 59.746 55.000 0.43 0.00 35.13 0.98
836 842 1.001393 CACAGGGCGGTGGGTTAAT 60.001 57.895 0.43 0.00 35.13 1.40
837 843 1.126329 TACACAGGGCGGTGGGTTAA 61.126 55.000 11.79 0.00 43.08 2.01
838 844 1.535930 TACACAGGGCGGTGGGTTA 60.536 57.895 11.79 0.00 43.08 2.85
839 845 2.850130 TACACAGGGCGGTGGGTT 60.850 61.111 11.79 0.00 43.08 4.11
840 846 3.633116 GTACACAGGGCGGTGGGT 61.633 66.667 11.79 5.83 43.08 4.51
841 847 4.404098 GGTACACAGGGCGGTGGG 62.404 72.222 11.79 0.00 43.08 4.61
842 848 3.310860 GAGGTACACAGGGCGGTGG 62.311 68.421 11.79 0.00 43.08 4.61
843 849 2.107041 TTGAGGTACACAGGGCGGTG 62.107 60.000 6.40 6.40 44.35 4.94
844 850 1.412453 TTTGAGGTACACAGGGCGGT 61.412 55.000 0.00 0.00 0.00 5.68
845 851 0.250553 TTTTGAGGTACACAGGGCGG 60.251 55.000 0.00 0.00 0.00 6.13
846 852 1.156736 CTTTTGAGGTACACAGGGCG 58.843 55.000 0.00 0.00 0.00 6.13
847 853 2.561478 TCTTTTGAGGTACACAGGGC 57.439 50.000 0.00 0.00 0.00 5.19
848 854 5.845391 TTTTTCTTTTGAGGTACACAGGG 57.155 39.130 0.00 0.00 0.00 4.45
876 882 1.757306 CCCCTGAACACAGAGCTGT 59.243 57.895 0.00 0.00 46.17 4.40
877 883 1.002868 CCCCCTGAACACAGAGCTG 60.003 63.158 0.00 0.00 33.94 4.24
878 884 1.462238 ACCCCCTGAACACAGAGCT 60.462 57.895 0.00 0.00 33.94 4.09
879 885 1.302832 CACCCCCTGAACACAGAGC 60.303 63.158 0.00 0.00 33.94 4.09
880 886 0.035458 GTCACCCCCTGAACACAGAG 59.965 60.000 0.00 0.00 33.94 3.35
881 887 0.399949 AGTCACCCCCTGAACACAGA 60.400 55.000 0.00 0.00 33.94 3.41
882 888 0.474184 AAGTCACCCCCTGAACACAG 59.526 55.000 0.00 0.00 0.00 3.66
883 889 0.182537 CAAGTCACCCCCTGAACACA 59.817 55.000 0.00 0.00 0.00 3.72
884 890 0.182775 ACAAGTCACCCCCTGAACAC 59.817 55.000 0.00 0.00 0.00 3.32
885 891 0.923358 AACAAGTCACCCCCTGAACA 59.077 50.000 0.00 0.00 0.00 3.18
886 892 2.067365 AAACAAGTCACCCCCTGAAC 57.933 50.000 0.00 0.00 0.00 3.18
887 893 2.838637 AAAACAAGTCACCCCCTGAA 57.161 45.000 0.00 0.00 0.00 3.02
888 894 2.838637 AAAAACAAGTCACCCCCTGA 57.161 45.000 0.00 0.00 0.00 3.86
889 895 3.243267 CGTTAAAAACAAGTCACCCCCTG 60.243 47.826 0.00 0.00 0.00 4.45
890 896 2.953648 CGTTAAAAACAAGTCACCCCCT 59.046 45.455 0.00 0.00 0.00 4.79
891 897 2.950975 TCGTTAAAAACAAGTCACCCCC 59.049 45.455 0.00 0.00 0.00 5.40
892 898 3.878699 TCTCGTTAAAAACAAGTCACCCC 59.121 43.478 0.00 0.00 0.00 4.95
893 899 4.260907 GGTCTCGTTAAAAACAAGTCACCC 60.261 45.833 0.00 0.00 0.00 4.61
894 900 4.260907 GGGTCTCGTTAAAAACAAGTCACC 60.261 45.833 0.00 0.00 0.00 4.02
895 901 4.573607 AGGGTCTCGTTAAAAACAAGTCAC 59.426 41.667 0.00 0.00 0.00 3.67
896 902 4.573201 CAGGGTCTCGTTAAAAACAAGTCA 59.427 41.667 0.00 0.00 0.00 3.41
897 903 4.812626 TCAGGGTCTCGTTAAAAACAAGTC 59.187 41.667 0.00 0.00 0.00 3.01
898 904 4.773013 TCAGGGTCTCGTTAAAAACAAGT 58.227 39.130 0.00 0.00 0.00 3.16
899 905 5.941948 ATCAGGGTCTCGTTAAAAACAAG 57.058 39.130 0.00 0.00 0.00 3.16
900 906 6.702716 AAATCAGGGTCTCGTTAAAAACAA 57.297 33.333 0.00 0.00 0.00 2.83
901 907 6.702716 AAAATCAGGGTCTCGTTAAAAACA 57.297 33.333 0.00 0.00 0.00 2.83
902 908 9.687210 AATTAAAATCAGGGTCTCGTTAAAAAC 57.313 29.630 0.00 0.00 0.00 2.43
904 910 9.902196 GAAATTAAAATCAGGGTCTCGTTAAAA 57.098 29.630 0.00 0.00 0.00 1.52
905 911 8.517056 GGAAATTAAAATCAGGGTCTCGTTAAA 58.483 33.333 0.00 0.00 0.00 1.52
906 912 7.666388 TGGAAATTAAAATCAGGGTCTCGTTAA 59.334 33.333 0.00 0.00 0.00 2.01
907 913 7.120138 GTGGAAATTAAAATCAGGGTCTCGTTA 59.880 37.037 0.00 0.00 0.00 3.18
908 914 6.007703 TGGAAATTAAAATCAGGGTCTCGTT 58.992 36.000 0.00 0.00 0.00 3.85
909 915 5.414765 GTGGAAATTAAAATCAGGGTCTCGT 59.585 40.000 0.00 0.00 0.00 4.18
910 916 5.414454 TGTGGAAATTAAAATCAGGGTCTCG 59.586 40.000 0.00 0.00 0.00 4.04
911 917 6.834168 TGTGGAAATTAAAATCAGGGTCTC 57.166 37.500 0.00 0.00 0.00 3.36
912 918 6.294508 CGTTGTGGAAATTAAAATCAGGGTCT 60.295 38.462 0.00 0.00 0.00 3.85
913 919 5.861787 CGTTGTGGAAATTAAAATCAGGGTC 59.138 40.000 0.00 0.00 0.00 4.46
914 920 5.303333 ACGTTGTGGAAATTAAAATCAGGGT 59.697 36.000 0.00 0.00 0.00 4.34
915 921 5.633182 CACGTTGTGGAAATTAAAATCAGGG 59.367 40.000 0.00 0.00 0.00 4.45
916 922 5.118510 GCACGTTGTGGAAATTAAAATCAGG 59.881 40.000 0.00 0.00 33.64 3.86
917 923 5.164196 CGCACGTTGTGGAAATTAAAATCAG 60.164 40.000 0.00 0.00 33.64 2.90
918 924 4.677378 CGCACGTTGTGGAAATTAAAATCA 59.323 37.500 0.00 0.00 33.64 2.57
919 925 4.677832 ACGCACGTTGTGGAAATTAAAATC 59.322 37.500 0.00 0.00 33.64 2.17
920 926 4.442733 CACGCACGTTGTGGAAATTAAAAT 59.557 37.500 9.34 0.00 33.64 1.82
921 927 3.791887 CACGCACGTTGTGGAAATTAAAA 59.208 39.130 9.34 0.00 33.64 1.52
922 928 3.364062 CACGCACGTTGTGGAAATTAAA 58.636 40.909 9.34 0.00 33.64 1.52
923 929 2.988343 CACGCACGTTGTGGAAATTAA 58.012 42.857 9.34 0.00 33.64 1.40
924 930 2.672188 CACGCACGTTGTGGAAATTA 57.328 45.000 9.34 0.00 33.64 1.40
925 931 3.542825 CACGCACGTTGTGGAAATT 57.457 47.368 9.34 0.00 33.64 1.82
931 937 2.549282 GTAGCCACGCACGTTGTG 59.451 61.111 10.09 10.09 37.09 3.33
932 938 2.663852 GGTAGCCACGCACGTTGT 60.664 61.111 0.00 0.00 0.00 3.32
933 939 3.419759 GGGTAGCCACGCACGTTG 61.420 66.667 5.96 0.00 37.54 4.10
934 940 3.463728 TTGGGTAGCCACGCACGTT 62.464 57.895 14.60 0.00 46.22 3.99
935 941 3.931247 TTGGGTAGCCACGCACGT 61.931 61.111 14.60 0.00 46.22 4.49
936 942 3.419759 GTTGGGTAGCCACGCACG 61.420 66.667 14.60 0.00 46.22 5.34
937 943 2.032071 AGTTGGGTAGCCACGCAC 59.968 61.111 14.60 9.76 46.22 5.34
938 944 2.345991 GAGTTGGGTAGCCACGCA 59.654 61.111 14.60 0.00 45.04 5.24
939 945 2.436115 GGAGTTGGGTAGCCACGC 60.436 66.667 14.60 9.85 38.08 5.34
940 946 2.125673 CGGAGTTGGGTAGCCACG 60.126 66.667 14.60 10.32 0.00 4.94
941 947 2.436115 GCGGAGTTGGGTAGCCAC 60.436 66.667 14.60 9.20 0.00 5.01
942 948 1.774894 AAAGCGGAGTTGGGTAGCCA 61.775 55.000 10.27 10.27 0.00 4.75
943 949 1.002502 AAAGCGGAGTTGGGTAGCC 60.003 57.895 3.29 3.29 0.00 3.93
944 950 1.025113 GGAAAGCGGAGTTGGGTAGC 61.025 60.000 0.00 0.00 0.00 3.58
945 951 0.323629 TGGAAAGCGGAGTTGGGTAG 59.676 55.000 0.00 0.00 0.00 3.18
946 952 0.323629 CTGGAAAGCGGAGTTGGGTA 59.676 55.000 0.00 0.00 0.00 3.69
947 953 1.073199 CTGGAAAGCGGAGTTGGGT 59.927 57.895 0.00 0.00 0.00 4.51
948 954 2.335712 GCTGGAAAGCGGAGTTGGG 61.336 63.158 0.00 0.00 0.00 4.12
949 955 1.301677 GAGCTGGAAAGCGGAGTTGG 61.302 60.000 0.00 0.00 40.27 3.77
950 956 1.301677 GGAGCTGGAAAGCGGAGTTG 61.302 60.000 0.00 0.00 40.27 3.16
951 957 1.003233 GGAGCTGGAAAGCGGAGTT 60.003 57.895 0.00 0.00 40.27 3.01
952 958 2.665603 GGAGCTGGAAAGCGGAGT 59.334 61.111 0.00 0.00 40.27 3.85
953 959 2.124942 GGGAGCTGGAAAGCGGAG 60.125 66.667 0.00 0.00 40.27 4.63
954 960 3.717294 GGGGAGCTGGAAAGCGGA 61.717 66.667 0.00 0.00 40.27 5.54
955 961 3.689002 GAGGGGAGCTGGAAAGCGG 62.689 68.421 0.00 0.00 40.27 5.52
956 962 2.124942 GAGGGGAGCTGGAAAGCG 60.125 66.667 0.00 0.00 40.27 4.68
957 963 0.251341 TTTGAGGGGAGCTGGAAAGC 60.251 55.000 0.00 0.00 0.00 3.51
958 964 2.292828 TTTTGAGGGGAGCTGGAAAG 57.707 50.000 0.00 0.00 0.00 2.62
959 965 2.765689 TTTTTGAGGGGAGCTGGAAA 57.234 45.000 0.00 0.00 0.00 3.13
980 986 2.650322 TCGCTGGAAAGTGGAGTTTTT 58.350 42.857 0.00 0.00 0.00 1.94
981 987 2.341846 TCGCTGGAAAGTGGAGTTTT 57.658 45.000 0.00 0.00 0.00 2.43
982 988 2.154462 CATCGCTGGAAAGTGGAGTTT 58.846 47.619 0.00 0.00 0.00 2.66
1227 1233 2.748647 TCGATCTCGACGGCCACA 60.749 61.111 2.24 0.00 44.22 4.17
1381 1387 4.521130 TCACTAGACAGATGTTCACACC 57.479 45.455 0.00 0.00 0.00 4.16
1395 1401 5.105473 CGTTGAGTAAGGGGAAATCACTAGA 60.105 44.000 0.00 0.00 0.00 2.43
1396 1402 5.109903 CGTTGAGTAAGGGGAAATCACTAG 58.890 45.833 0.00 0.00 0.00 2.57
1413 1421 9.804758 GAGATAAATAATATAGGACCCGTTGAG 57.195 37.037 0.00 0.00 0.00 3.02
1431 1439 9.178758 GACAAGTATTTCCAGTTGGAGATAAAT 57.821 33.333 11.68 6.92 46.36 1.40
1432 1440 8.160765 TGACAAGTATTTCCAGTTGGAGATAAA 58.839 33.333 11.68 0.19 46.36 1.40
1433 1441 7.685481 TGACAAGTATTTCCAGTTGGAGATAA 58.315 34.615 11.68 0.51 46.36 1.75
1469 1477 9.630098 ACTGTTGATCAAAATAATCACACATTC 57.370 29.630 10.35 0.00 33.01 2.67
1487 1495 5.670341 GCACGCTCGTAATTAAACTGTTGAT 60.670 40.000 0.00 0.00 0.00 2.57
1527 1535 3.375299 CCCTTCTCTGAGCCAAATTAACG 59.625 47.826 0.00 0.00 0.00 3.18
1607 1617 5.060569 CCTGAAGTATACAAAGACAACGACG 59.939 44.000 5.50 0.00 0.00 5.12
1730 1740 2.585330 TCTTGGCATCACACATGTGTT 58.415 42.857 28.64 13.16 45.76 3.32
1738 1748 3.737559 ACCCTTTATCTTGGCATCACA 57.262 42.857 0.00 0.00 0.00 3.58
1839 1849 2.556144 TCTTGACAGAATGCACAGCT 57.444 45.000 0.00 0.00 42.53 4.24
1842 1852 3.213206 ACCTTCTTGACAGAATGCACA 57.787 42.857 0.00 0.00 42.53 4.57
1856 1866 1.761198 GGAATAGTGGCGGTACCTTCT 59.239 52.381 10.90 5.42 40.22 2.85
2018 2028 2.490903 CCATCTCTTTTGCAACAGAGGG 59.509 50.000 32.05 24.82 37.69 4.30
2051 2061 2.851195 AGTGGCACAATCTTCGAAACT 58.149 42.857 21.41 0.00 44.16 2.66
2322 2332 5.317733 ACAAAACGATTGTGTTTCTGGAA 57.682 34.783 9.86 0.00 41.01 3.53
2353 2363 5.370875 AGAGGCAATCTTCAGAAGCTTAT 57.629 39.130 5.15 0.00 32.99 1.73
2433 2443 3.197265 TGCGACACTATTCATGTGGATG 58.803 45.455 0.00 0.00 39.52 3.51
2522 2532 8.584157 TGTTTGGTTGCAAATAATATTCTCACT 58.416 29.630 0.00 0.00 0.00 3.41
2672 2686 5.593909 TCCAATGAATGCCTGTATTTGGTAG 59.406 40.000 0.00 0.00 0.00 3.18
2708 2753 6.220930 TCCATATTTCCGTAGCATCTACAAC 58.779 40.000 5.05 0.00 0.00 3.32
2709 2754 6.413783 TCCATATTTCCGTAGCATCTACAA 57.586 37.500 5.05 0.00 0.00 2.41
2710 2755 6.605471 ATCCATATTTCCGTAGCATCTACA 57.395 37.500 5.05 0.00 0.00 2.74
2711 2756 8.033038 TGTAATCCATATTTCCGTAGCATCTAC 58.967 37.037 0.00 0.00 0.00 2.59
2712 2757 8.129496 TGTAATCCATATTTCCGTAGCATCTA 57.871 34.615 0.00 0.00 0.00 1.98
2713 2758 7.004555 TGTAATCCATATTTCCGTAGCATCT 57.995 36.000 0.00 0.00 0.00 2.90
2714 2759 7.849804 ATGTAATCCATATTTCCGTAGCATC 57.150 36.000 0.00 0.00 29.82 3.91
2715 2760 9.905713 ATTATGTAATCCATATTTCCGTAGCAT 57.094 29.630 0.00 0.00 35.96 3.79
2716 2761 9.378551 GATTATGTAATCCATATTTCCGTAGCA 57.621 33.333 2.06 0.00 35.96 3.49
2717 2762 9.378551 TGATTATGTAATCCATATTTCCGTAGC 57.621 33.333 9.59 0.00 40.98 3.58
2728 2773 8.862085 TGTCATGCAATTGATTATGTAATCCAT 58.138 29.630 10.34 2.79 40.98 3.41
2729 2774 8.136800 GTGTCATGCAATTGATTATGTAATCCA 58.863 33.333 10.34 0.68 40.98 3.41
2730 2775 8.355169 AGTGTCATGCAATTGATTATGTAATCC 58.645 33.333 10.34 0.52 40.98 3.01
2731 2776 9.177304 CAGTGTCATGCAATTGATTATGTAATC 57.823 33.333 10.34 5.93 41.81 1.75
2732 2777 8.689061 ACAGTGTCATGCAATTGATTATGTAAT 58.311 29.630 10.34 1.95 0.00 1.89
2733 2778 8.054152 ACAGTGTCATGCAATTGATTATGTAA 57.946 30.769 10.34 1.43 0.00 2.41
2734 2779 7.628769 ACAGTGTCATGCAATTGATTATGTA 57.371 32.000 10.34 2.46 0.00 2.29
2735 2780 6.519679 ACAGTGTCATGCAATTGATTATGT 57.480 33.333 10.34 0.00 0.00 2.29
2736 2781 7.700505 AGTACAGTGTCATGCAATTGATTATG 58.299 34.615 10.34 10.11 0.00 1.90
2737 2782 7.772292 AGAGTACAGTGTCATGCAATTGATTAT 59.228 33.333 10.34 0.00 0.00 1.28
2738 2783 7.105588 AGAGTACAGTGTCATGCAATTGATTA 58.894 34.615 10.34 0.00 0.00 1.75
2921 2993 9.764363 TGTATGTCTCACATTTATTCATAGACC 57.236 33.333 0.00 0.00 39.88 3.85
2940 3012 3.243267 ACCGCACCAAAGTTTTGTATGTC 60.243 43.478 4.12 0.00 36.45 3.06
2961 3033 9.181805 GAAAGCTATCTTGGTCAAACTTTAAAC 57.818 33.333 0.00 0.00 31.78 2.01
3027 3099 2.860009 CATGGGATCCTGATGTCTTGG 58.140 52.381 12.58 0.00 0.00 3.61
3103 3175 3.258123 TGAAAATAGCTCCTGGCAAAACC 59.742 43.478 0.00 0.00 44.79 3.27
3121 3193 4.593206 AGGTCCAACATGTCTAGTCTGAAA 59.407 41.667 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.