Multiple sequence alignment - TraesCS7B01G143900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G143900 chr7B 100.000 3817 0 0 1 3817 185062402 185058586 0.000000e+00 7049.0
1 TraesCS7B01G143900 chr7B 81.500 400 63 8 1114 1505 455272180 455271784 6.150000e-83 318.0
2 TraesCS7B01G143900 chr7B 88.281 128 13 2 1250 1376 376431563 376431689 6.600000e-33 152.0
3 TraesCS7B01G143900 chr7A 93.509 3728 144 45 127 3804 228264163 228260484 0.000000e+00 5454.0
4 TraesCS7B01G143900 chr7A 81.592 402 64 7 1106 1499 489163067 489163466 1.320000e-84 324.0
5 TraesCS7B01G143900 chr7A 78.884 251 38 12 1250 1494 430240715 430240956 5.110000e-34 156.0
6 TraesCS7B01G143900 chr7A 94.444 90 4 1 26 114 228264464 228264375 1.850000e-28 137.0
7 TraesCS7B01G143900 chr7D 94.860 3288 97 34 561 3815 215096992 215093744 0.000000e+00 5070.0
8 TraesCS7B01G143900 chr7D 95.625 320 14 0 131 450 215099066 215098747 7.310000e-142 514.0
9 TraesCS7B01G143900 chr7D 81.527 406 65 7 1102 1499 438368478 438368881 3.680000e-85 326.0
10 TraesCS7B01G143900 chr7D 88.281 128 13 2 1250 1376 382256041 382256167 6.600000e-33 152.0
11 TraesCS7B01G143900 chr7D 96.629 89 3 0 26 114 215101170 215101082 8.540000e-32 148.0
12 TraesCS7B01G143900 chr7D 98.039 51 1 0 495 545 215098532 215098482 5.250000e-14 89.8
13 TraesCS7B01G143900 chr2A 84.821 224 30 4 1274 1495 625957808 625958029 4.960000e-54 222.0
14 TraesCS7B01G143900 chr2A 95.238 42 2 0 1105 1146 572616091 572616050 2.460000e-07 67.6
15 TraesCS7B01G143900 chr5D 75.362 276 55 12 1096 1366 519277273 519277540 1.860000e-23 121.0
16 TraesCS7B01G143900 chr2D 95.238 42 2 0 1105 1146 417543866 417543907 2.460000e-07 67.6
17 TraesCS7B01G143900 chr2B 95.238 42 2 0 1105 1146 489418817 489418858 2.460000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G143900 chr7B 185058586 185062402 3816 True 7049.00 7049 100.00000 1 3817 1 chr7B.!!$R1 3816
1 TraesCS7B01G143900 chr7A 228260484 228264464 3980 True 2795.50 5454 93.97650 26 3804 2 chr7A.!!$R1 3778
2 TraesCS7B01G143900 chr7D 215093744 215101170 7426 True 1455.45 5070 96.28825 26 3815 4 chr7D.!!$R1 3789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 4454 0.107214 AGGCGGTGAGAGAGAGAGAG 60.107 60.0 0.00 0.00 0.00 3.20 F
780 4455 0.107410 GGCGGTGAGAGAGAGAGAGA 60.107 60.0 0.00 0.00 0.00 3.10 F
1897 5592 0.321564 TGATGCTGTACACAGTGGGC 60.322 55.0 10.87 4.51 45.45 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2480 6191 0.324943 TGAGCTGACTAGGGTTTGGC 59.675 55.000 0.00 0.0 0.0 4.52 R
2538 6252 1.076777 GGCCCTGGCTCTGCATTAA 60.077 57.895 8.29 0.0 41.6 1.40 R
3338 7064 0.738975 GGCAAAAAGGGGCGTCTATC 59.261 55.000 0.00 0.0 0.0 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.740364 ATTGCTAGAGGAGTGGGGT 57.260 52.632 0.00 0.00 0.00 4.95
19 20 2.868964 ATTGCTAGAGGAGTGGGGTA 57.131 50.000 0.00 0.00 0.00 3.69
20 21 1.861982 TTGCTAGAGGAGTGGGGTAC 58.138 55.000 0.00 0.00 0.00 3.34
88 90 3.133362 ACTTGACCAACGAGTAGGTTTCA 59.867 43.478 0.00 0.00 41.04 2.69
99 101 5.701290 ACGAGTAGGTTTCATTTGGAGAAAG 59.299 40.000 0.00 0.00 35.81 2.62
114 116 0.741221 GAAAGCCAGGCGTCCTACTG 60.741 60.000 5.55 0.00 29.64 2.74
122 124 3.748083 CAGGCGTCCTACTGGTATAGTA 58.252 50.000 0.00 0.00 40.89 1.82
141 2151 7.670605 ATAGTAGTAGTAGGAAACAATGGCA 57.329 36.000 0.00 0.00 0.00 4.92
184 2194 0.390078 TGAAAATGCATGCAAGGGCG 60.390 50.000 26.68 0.00 45.35 6.13
281 2291 0.249699 CGCACAGTGGAAGTGGTACA 60.250 55.000 1.84 0.00 43.12 2.90
413 2423 5.462398 ACGATCTTTTGCCTTACATATCGAC 59.538 40.000 8.22 0.00 38.57 4.20
645 4320 3.134127 GCCCGTTCCAGGTGCATC 61.134 66.667 0.00 0.00 0.00 3.91
659 4334 2.092323 GTGCATCTTTACCCTTCACCC 58.908 52.381 0.00 0.00 0.00 4.61
776 4451 0.618981 TACAGGCGGTGAGAGAGAGA 59.381 55.000 0.00 0.00 0.00 3.10
778 4453 0.393673 CAGGCGGTGAGAGAGAGAGA 60.394 60.000 0.00 0.00 0.00 3.10
779 4454 0.107214 AGGCGGTGAGAGAGAGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
780 4455 0.107410 GGCGGTGAGAGAGAGAGAGA 60.107 60.000 0.00 0.00 0.00 3.10
781 4456 1.299541 GCGGTGAGAGAGAGAGAGAG 58.700 60.000 0.00 0.00 0.00 3.20
782 4457 1.134521 GCGGTGAGAGAGAGAGAGAGA 60.135 57.143 0.00 0.00 0.00 3.10
1569 5259 2.097304 TGGTTGCACGCTATTATTGCTG 59.903 45.455 0.00 0.00 37.16 4.41
1575 5265 2.549329 CACGCTATTATTGCTGCATCCA 59.451 45.455 1.84 0.00 0.00 3.41
1621 5311 9.907576 CTACTCTTTTTGCTAAATACATTCTCG 57.092 33.333 0.00 0.00 0.00 4.04
1663 5353 2.221055 GCTCGTCGTTGAAACATCAACT 59.779 45.455 16.85 0.00 45.53 3.16
1666 5356 3.000825 TCGTCGTTGAAACATCAACTGTG 59.999 43.478 16.85 8.22 45.53 3.66
1800 5494 8.248253 TGCATGCAGATTGATTTGGAATATATC 58.752 33.333 18.46 0.00 0.00 1.63
1897 5592 0.321564 TGATGCTGTACACAGTGGGC 60.322 55.000 10.87 4.51 45.45 5.36
1921 5616 6.438763 CCGTTTCTGCTCAAAAATCTAGTTT 58.561 36.000 0.00 0.00 0.00 2.66
1939 5634 3.947196 AGTTTCAGATTTGCACTGACACA 59.053 39.130 18.73 0.00 43.29 3.72
1945 5640 7.719761 TCAGATTTGCACTGACACAGGATGT 62.720 44.000 1.56 0.00 44.33 3.06
1975 5670 6.067263 GCTAGCTAGCGATATAAGTATGCT 57.933 41.667 28.89 0.00 39.82 3.79
1976 5671 7.192148 GCTAGCTAGCGATATAAGTATGCTA 57.808 40.000 28.89 0.00 39.82 3.49
1979 5674 6.787225 AGCTAGCGATATAAGTATGCTACAC 58.213 40.000 9.55 0.00 37.12 2.90
1980 5675 5.972382 GCTAGCGATATAAGTATGCTACACC 59.028 44.000 0.00 0.00 37.12 4.16
1981 5676 5.977489 AGCGATATAAGTATGCTACACCA 57.023 39.130 0.00 0.00 33.37 4.17
1982 5677 6.531503 AGCGATATAAGTATGCTACACCAT 57.468 37.500 0.00 0.00 33.37 3.55
1983 5678 7.640597 AGCGATATAAGTATGCTACACCATA 57.359 36.000 0.00 0.00 33.37 2.74
1984 5679 7.481642 AGCGATATAAGTATGCTACACCATAC 58.518 38.462 4.58 4.58 44.95 2.39
2067 5764 2.101415 CCAATCGTCCTACTGCAGATCA 59.899 50.000 23.35 3.88 0.00 2.92
2480 6191 4.748144 GCACCTCCTGCCCCCTTG 62.748 72.222 0.00 0.00 40.42 3.61
2538 6252 1.142688 AAACCTGCAGTCCTCCCCAT 61.143 55.000 13.81 0.00 0.00 4.00
2880 6598 4.083537 TCGATCGTTATGTTGCAGCTTTTT 60.084 37.500 15.94 0.00 0.00 1.94
2913 6631 0.439985 CAAGTTGCGAGTGTGATCGG 59.560 55.000 0.00 0.00 42.94 4.18
3107 6830 7.877612 CACATGCAATATGGTCCTATGTAGTTA 59.122 37.037 0.00 0.00 0.00 2.24
3135 6858 8.809159 ATCTATGTGTAATGAAGAACATCTCG 57.191 34.615 0.00 0.00 38.38 4.04
3154 6877 4.278170 TCTCGTTGTGGATTTGCTTTTCAT 59.722 37.500 0.00 0.00 0.00 2.57
3159 6882 4.757594 TGTGGATTTGCTTTTCATATGCC 58.242 39.130 0.00 0.00 0.00 4.40
3166 6891 4.829064 TGCTTTTCATATGCCCGATAAC 57.171 40.909 0.00 0.00 0.00 1.89
3171 6896 5.687770 TTTCATATGCCCGATAACATGTG 57.312 39.130 0.00 0.00 36.91 3.21
3229 6955 8.191534 AGTCCTTATAAACTTGTAGTGACTGT 57.808 34.615 0.00 0.00 0.00 3.55
3262 6988 9.388346 TGTTCAAAAGTAAATAATTGTAGTGCG 57.612 29.630 0.00 0.00 0.00 5.34
3267 6993 8.782339 AAAGTAAATAATTGTAGTGCGGTAGT 57.218 30.769 0.00 0.00 0.00 2.73
3284 7010 3.374678 GGTAGTCACTCCTACGTTCTCTG 59.625 52.174 0.00 0.00 38.55 3.35
3295 7021 2.851195 ACGTTCTCTGGAAACATGCTT 58.149 42.857 0.00 0.00 41.51 3.91
3298 7024 3.499918 CGTTCTCTGGAAACATGCTTTCT 59.500 43.478 15.60 0.00 41.51 2.52
3328 7054 6.092259 GCGACTCCTACAATAACTTGATGTTT 59.908 38.462 0.00 0.00 39.89 2.83
3329 7055 7.360946 GCGACTCCTACAATAACTTGATGTTTT 60.361 37.037 0.00 0.00 39.89 2.43
3358 7088 0.039035 ATAGACGCCCCTTTTTGCCA 59.961 50.000 0.00 0.00 0.00 4.92
3424 7154 3.417069 CACAACTAGGTGTGGAATGGA 57.583 47.619 29.81 0.00 44.29 3.41
3425 7155 3.750371 CACAACTAGGTGTGGAATGGAA 58.250 45.455 29.81 0.00 44.29 3.53
3544 7274 1.827344 ACTCTCTCATTGCACGGATGA 59.173 47.619 0.00 0.00 32.87 2.92
3546 7276 0.935898 CTCTCATTGCACGGATGAGC 59.064 55.000 18.24 0.00 46.40 4.26
3547 7277 0.538584 TCTCATTGCACGGATGAGCT 59.461 50.000 18.24 0.00 46.40 4.09
3688 7418 1.297664 GTCAGAGATGGACATGCAGC 58.702 55.000 0.00 0.00 35.36 5.25
3760 7494 4.039357 CGACGTGACGGGCTCACT 62.039 66.667 10.66 0.00 46.50 3.41
3806 7540 0.673333 TGATGCGTGCGTGGAAGAAT 60.673 50.000 0.00 0.00 0.00 2.40
3810 7544 1.006832 GCGTGCGTGGAAGAATGTAT 58.993 50.000 0.00 0.00 0.00 2.29
3812 7546 2.159572 GCGTGCGTGGAAGAATGTATTT 60.160 45.455 0.00 0.00 0.00 1.40
3813 7547 3.416277 CGTGCGTGGAAGAATGTATTTG 58.584 45.455 0.00 0.00 0.00 2.32
3814 7548 3.727673 CGTGCGTGGAAGAATGTATTTGG 60.728 47.826 0.00 0.00 0.00 3.28
3815 7549 3.438781 GTGCGTGGAAGAATGTATTTGGA 59.561 43.478 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.399580 GTACCCCACTCCTCTAGCAAT 58.600 52.381 0.00 0.00 0.00 3.56
1 2 1.621622 GGTACCCCACTCCTCTAGCAA 60.622 57.143 0.00 0.00 0.00 3.91
2 3 0.032416 GGTACCCCACTCCTCTAGCA 60.032 60.000 0.00 0.00 0.00 3.49
3 4 0.032416 TGGTACCCCACTCCTCTAGC 60.032 60.000 10.07 0.00 35.17 3.42
4 5 1.288335 ACTGGTACCCCACTCCTCTAG 59.712 57.143 10.07 0.00 35.17 2.43
5 6 1.006758 CACTGGTACCCCACTCCTCTA 59.993 57.143 10.07 0.00 35.17 2.43
6 7 0.252284 CACTGGTACCCCACTCCTCT 60.252 60.000 10.07 0.00 35.17 3.69
7 8 0.252103 TCACTGGTACCCCACTCCTC 60.252 60.000 10.07 0.00 35.17 3.71
8 9 0.544595 GTCACTGGTACCCCACTCCT 60.545 60.000 10.07 0.00 35.17 3.69
9 10 0.834687 TGTCACTGGTACCCCACTCC 60.835 60.000 10.07 0.00 35.17 3.85
10 11 1.002087 CTTGTCACTGGTACCCCACTC 59.998 57.143 10.07 0.00 35.17 3.51
11 12 1.056660 CTTGTCACTGGTACCCCACT 58.943 55.000 10.07 0.00 35.17 4.00
12 13 0.763035 ACTTGTCACTGGTACCCCAC 59.237 55.000 10.07 1.04 35.17 4.61
13 14 0.762418 CACTTGTCACTGGTACCCCA 59.238 55.000 10.07 0.00 38.87 4.96
14 15 1.053424 TCACTTGTCACTGGTACCCC 58.947 55.000 10.07 0.00 0.00 4.95
15 16 3.679083 GCTATCACTTGTCACTGGTACCC 60.679 52.174 10.07 0.00 0.00 3.69
16 17 3.522553 GCTATCACTTGTCACTGGTACC 58.477 50.000 4.43 4.43 0.00 3.34
17 18 3.056107 TGGCTATCACTTGTCACTGGTAC 60.056 47.826 0.00 0.00 0.00 3.34
18 19 3.169908 TGGCTATCACTTGTCACTGGTA 58.830 45.455 0.00 0.00 0.00 3.25
19 20 1.977854 TGGCTATCACTTGTCACTGGT 59.022 47.619 0.00 0.00 0.00 4.00
20 21 2.625737 CTGGCTATCACTTGTCACTGG 58.374 52.381 0.00 0.00 0.00 4.00
21 22 2.234661 TCCTGGCTATCACTTGTCACTG 59.765 50.000 0.00 0.00 0.00 3.66
22 23 2.234908 GTCCTGGCTATCACTTGTCACT 59.765 50.000 0.00 0.00 0.00 3.41
23 24 2.028112 TGTCCTGGCTATCACTTGTCAC 60.028 50.000 0.00 0.00 0.00 3.67
24 25 2.256306 TGTCCTGGCTATCACTTGTCA 58.744 47.619 0.00 0.00 0.00 3.58
88 90 0.251341 ACGCCTGGCTTTCTCCAAAT 60.251 50.000 17.92 0.00 35.36 2.32
114 116 8.087136 GCCATTGTTTCCTACTACTACTATACC 58.913 40.741 0.00 0.00 0.00 2.73
116 118 8.771521 TGCCATTGTTTCCTACTACTACTATA 57.228 34.615 0.00 0.00 0.00 1.31
118 120 7.497595 CATGCCATTGTTTCCTACTACTACTA 58.502 38.462 0.00 0.00 0.00 1.82
120 122 5.007724 GCATGCCATTGTTTCCTACTACTAC 59.992 44.000 6.36 0.00 0.00 2.73
122 124 3.947834 GCATGCCATTGTTTCCTACTACT 59.052 43.478 6.36 0.00 0.00 2.57
123 125 3.242739 CGCATGCCATTGTTTCCTACTAC 60.243 47.826 13.15 0.00 0.00 2.73
125 127 1.745087 CGCATGCCATTGTTTCCTACT 59.255 47.619 13.15 0.00 0.00 2.57
141 2151 1.867233 GACTAATTCCATCGTGCGCAT 59.133 47.619 15.91 0.00 0.00 4.73
201 2211 0.466124 CCCTTGTAGGCCTCTAGCAC 59.534 60.000 9.68 0.82 46.50 4.40
372 2382 0.458669 CGTGTACCTACAGGCCGATT 59.541 55.000 0.00 0.00 39.32 3.34
377 2387 3.521947 AAAGATCGTGTACCTACAGGC 57.478 47.619 0.00 0.00 40.71 4.85
645 4320 3.808834 AAAGGAGGGTGAAGGGTAAAG 57.191 47.619 0.00 0.00 0.00 1.85
659 4334 3.344515 CGGAAGGGAAAGGTTAAAGGAG 58.655 50.000 0.00 0.00 0.00 3.69
776 4451 1.232461 AAGCCCCTACCCCTCTCTCT 61.232 60.000 0.00 0.00 0.00 3.10
778 4453 0.621862 CAAAGCCCCTACCCCTCTCT 60.622 60.000 0.00 0.00 0.00 3.10
779 4454 1.636769 CCAAAGCCCCTACCCCTCTC 61.637 65.000 0.00 0.00 0.00 3.20
780 4455 1.619669 CCAAAGCCCCTACCCCTCT 60.620 63.158 0.00 0.00 0.00 3.69
781 4456 2.690734 CCCAAAGCCCCTACCCCTC 61.691 68.421 0.00 0.00 0.00 4.30
782 4457 2.617215 CCCAAAGCCCCTACCCCT 60.617 66.667 0.00 0.00 0.00 4.79
807 4482 5.762825 ACGTAGAGAGACAACAGTGTTTA 57.237 39.130 5.57 0.00 38.41 2.01
1054 4744 1.410850 GCCATCTCCTCCCCGATCAA 61.411 60.000 0.00 0.00 0.00 2.57
1621 5311 3.832276 CTCACACAGTGACTAGAAGCTC 58.168 50.000 7.81 0.00 37.67 4.09
1663 5353 2.238646 ACTTGTTCTTGACCACTCCACA 59.761 45.455 0.00 0.00 0.00 4.17
1666 5356 4.448210 TGTAACTTGTTCTTGACCACTCC 58.552 43.478 0.00 0.00 0.00 3.85
1897 5592 5.613358 ACTAGATTTTTGAGCAGAAACGG 57.387 39.130 0.00 0.00 0.00 4.44
1921 5616 2.104622 TCCTGTGTCAGTGCAAATCTGA 59.895 45.455 1.56 1.56 39.25 3.27
1939 5634 4.016444 GCTAGCTAGCTCAGATACATCCT 58.984 47.826 33.71 0.00 45.62 3.24
1945 5640 7.276658 ACTTATATCGCTAGCTAGCTCAGATA 58.723 38.462 36.02 31.85 46.85 1.98
1980 5675 3.434299 GGAACAAACACGTACCCAGTATG 59.566 47.826 0.00 0.00 0.00 2.39
1981 5676 3.557686 GGGAACAAACACGTACCCAGTAT 60.558 47.826 0.00 0.00 37.50 2.12
1982 5677 2.224257 GGGAACAAACACGTACCCAGTA 60.224 50.000 0.00 0.00 37.50 2.74
1983 5678 1.475571 GGGAACAAACACGTACCCAGT 60.476 52.381 0.00 0.00 37.50 4.00
1984 5679 1.202722 AGGGAACAAACACGTACCCAG 60.203 52.381 0.00 0.00 39.73 4.45
1985 5680 0.838608 AGGGAACAAACACGTACCCA 59.161 50.000 0.00 0.00 39.73 4.51
1986 5681 1.875514 GAAGGGAACAAACACGTACCC 59.124 52.381 0.00 0.00 37.79 3.69
2014 5709 2.159212 GCCATGCATGCAAAGTACATGA 60.159 45.455 26.68 0.00 46.33 3.07
2015 5710 2.159156 AGCCATGCATGCAAAGTACATG 60.159 45.455 26.68 16.06 46.19 3.21
2016 5711 2.100252 GAGCCATGCATGCAAAGTACAT 59.900 45.455 26.68 2.56 0.00 2.29
2067 5764 7.504911 CAGGGAGATATCAATGGAAGATTTGTT 59.495 37.037 5.32 0.00 0.00 2.83
2119 5816 0.676466 ATGCTTCATGGGCGAAACGA 60.676 50.000 0.00 0.00 0.00 3.85
2121 5818 3.502191 TTTATGCTTCATGGGCGAAAC 57.498 42.857 0.00 0.00 0.00 2.78
2204 5906 0.933796 GCTAGGACAGAAATGCGCTC 59.066 55.000 9.73 0.00 0.00 5.03
2206 5908 2.131183 CTAGCTAGGACAGAAATGCGC 58.869 52.381 13.32 0.00 0.00 6.09
2207 5909 3.717400 TCTAGCTAGGACAGAAATGCG 57.283 47.619 20.58 0.00 0.00 4.73
2293 6004 9.630098 ACAATATAAGTTCAAAACATTGCTCAG 57.370 29.630 0.00 0.00 0.00 3.35
2473 6184 1.000359 CTAGGGTTTGGCAAGGGGG 60.000 63.158 0.00 0.00 0.00 5.40
2480 6191 0.324943 TGAGCTGACTAGGGTTTGGC 59.675 55.000 0.00 0.00 0.00 4.52
2538 6252 1.076777 GGCCCTGGCTCTGCATTAA 60.077 57.895 8.29 0.00 41.60 1.40
2769 6483 1.139058 GCCCATCTCGTACATGAAGGT 59.861 52.381 0.00 0.00 0.00 3.50
2810 6524 1.522092 GAGTGACCCGGATCATGCA 59.478 57.895 0.00 0.00 0.00 3.96
2880 6598 8.817100 CACTCGCAACTTGACTAATCAATAATA 58.183 33.333 0.00 0.00 43.92 0.98
2941 6663 3.136626 AGGATTAATCGGAGAACAAGGGG 59.863 47.826 9.32 0.00 43.58 4.79
3135 6858 5.063817 GGCATATGAAAAGCAAATCCACAAC 59.936 40.000 6.97 0.00 0.00 3.32
3154 6877 2.158827 ACAGCACATGTTATCGGGCATA 60.159 45.455 0.00 0.00 39.96 3.14
3159 6882 4.150627 GCTACATACAGCACATGTTATCGG 59.849 45.833 0.00 0.00 39.96 4.18
3171 6896 3.119291 CACTGCTAGTGCTACATACAGC 58.881 50.000 3.83 0.00 39.62 4.40
3199 6924 8.475639 TCACTACAAGTTTATAAGGACTCATCC 58.524 37.037 0.00 0.00 46.69 3.51
3262 6988 3.374678 CAGAGAACGTAGGAGTGACTACC 59.625 52.174 0.00 0.00 40.11 3.18
3267 6993 2.873094 TCCAGAGAACGTAGGAGTGA 57.127 50.000 0.00 0.00 0.00 3.41
3284 7010 2.159599 CGCAGAGAGAAAGCATGTTTCC 60.160 50.000 13.64 0.00 0.00 3.13
3295 7021 2.491675 TGTAGGAGTCGCAGAGAGAA 57.508 50.000 0.00 0.00 36.95 2.87
3298 7024 4.270834 AGTTATTGTAGGAGTCGCAGAGA 58.729 43.478 0.00 0.00 36.95 3.10
3328 7054 4.913784 AGGGGCGTCTATCTTTTTGTTAA 58.086 39.130 0.00 0.00 0.00 2.01
3329 7055 4.563140 AGGGGCGTCTATCTTTTTGTTA 57.437 40.909 0.00 0.00 0.00 2.41
3332 7058 4.783764 AAAAGGGGCGTCTATCTTTTTG 57.216 40.909 9.29 0.00 36.42 2.44
3334 7060 3.056821 GCAAAAAGGGGCGTCTATCTTTT 60.057 43.478 9.29 9.29 40.01 2.27
3335 7061 2.492088 GCAAAAAGGGGCGTCTATCTTT 59.508 45.455 0.00 0.00 0.00 2.52
3336 7062 2.092323 GCAAAAAGGGGCGTCTATCTT 58.908 47.619 0.00 0.00 0.00 2.40
3337 7063 1.682087 GGCAAAAAGGGGCGTCTATCT 60.682 52.381 0.00 0.00 0.00 1.98
3338 7064 0.738975 GGCAAAAAGGGGCGTCTATC 59.261 55.000 0.00 0.00 0.00 2.08
3344 7074 1.178534 TCTTCTGGCAAAAAGGGGCG 61.179 55.000 8.84 0.00 0.00 6.13
3474 7204 4.152402 CCGAATCCACTACACAACAAAGAG 59.848 45.833 0.00 0.00 0.00 2.85
3477 7207 3.811083 ACCGAATCCACTACACAACAAA 58.189 40.909 0.00 0.00 0.00 2.83
3544 7274 0.962356 GTGCATGTGGTTGGCTAGCT 60.962 55.000 15.72 0.00 0.00 3.32
3545 7275 1.243342 TGTGCATGTGGTTGGCTAGC 61.243 55.000 6.04 6.04 0.00 3.42
3546 7276 1.133598 CATGTGCATGTGGTTGGCTAG 59.866 52.381 4.13 0.00 34.23 3.42
3547 7277 1.175654 CATGTGCATGTGGTTGGCTA 58.824 50.000 4.13 0.00 34.23 3.93
3729 7463 2.964925 GTCGCAACGTCCACTGCA 60.965 61.111 10.32 0.00 38.52 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.