Multiple sequence alignment - TraesCS7B01G143800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G143800 chr7B 100.000 3515 0 0 1 3515 185012749 185016263 0.000000e+00 6492.0
1 TraesCS7B01G143800 chr7B 79.310 145 23 6 111 249 693005376 693005519 1.040000e-15 95.3
2 TraesCS7B01G143800 chr7D 93.993 3013 131 30 530 3515 215054696 215057685 0.000000e+00 4516.0
3 TraesCS7B01G143800 chr7D 87.671 73 9 0 809 881 6589256 6589328 6.250000e-13 86.1
4 TraesCS7B01G143800 chr7A 93.896 2310 103 17 654 2946 228169867 228172155 0.000000e+00 3450.0
5 TraesCS7B01G143800 chr7A 87.912 546 30 10 2976 3515 228172157 228172672 8.340000e-171 610.0
6 TraesCS7B01G143800 chr7A 84.836 244 36 1 1 243 228169412 228169655 9.750000e-61 244.0
7 TraesCS7B01G143800 chrUn 85.000 180 21 2 696 869 303981333 303981512 1.000000e-40 178.0
8 TraesCS7B01G143800 chrUn 85.000 180 21 2 696 869 356554398 356554219 1.000000e-40 178.0
9 TraesCS7B01G143800 chr1A 87.129 101 13 0 696 796 16483201 16483301 7.970000e-22 115.0
10 TraesCS7B01G143800 chr2B 79.630 162 23 6 722 874 80554609 80554449 1.330000e-19 108.0
11 TraesCS7B01G143800 chr1B 80.000 140 21 6 123 258 368226297 368226433 2.890000e-16 97.1
12 TraesCS7B01G143800 chr1B 76.647 167 32 5 722 881 104718741 104718575 6.250000e-13 86.1
13 TraesCS7B01G143800 chr2D 85.556 90 11 2 797 884 131475193 131475104 3.740000e-15 93.5
14 TraesCS7B01G143800 chr6B 85.366 82 11 1 797 877 222427433 222427352 2.250000e-12 84.2
15 TraesCS7B01G143800 chr6B 75.138 181 39 6 715 892 571742625 571742802 2.910000e-11 80.5
16 TraesCS7B01G143800 chr2A 83.333 84 13 1 715 797 63612348 63612265 3.760000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G143800 chr7B 185012749 185016263 3514 False 6492.000000 6492 100.000000 1 3515 1 chr7B.!!$F1 3514
1 TraesCS7B01G143800 chr7D 215054696 215057685 2989 False 4516.000000 4516 93.993000 530 3515 1 chr7D.!!$F2 2985
2 TraesCS7B01G143800 chr7A 228169412 228172672 3260 False 1434.666667 3450 88.881333 1 3515 3 chr7A.!!$F1 3514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 308 0.034574 CCCATCAACCCATCAACCGA 60.035 55.0 0.00 0.0 0.00 4.69 F
326 328 0.237235 TGTTCATTTCACTTCCGCGC 59.763 50.0 0.00 0.0 0.00 6.86 F
467 469 0.453782 CGCGAATCGGGTGTTTTTCC 60.454 55.0 11.67 0.0 35.14 3.13 F
468 470 0.594110 GCGAATCGGGTGTTTTTCCA 59.406 50.0 4.35 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 2293 0.602905 AGTAACCTGCACGGCTCAAC 60.603 55.000 2.50 0.0 35.61 3.18 R
2312 2406 1.112315 CCTCTCAGCTACATCGGCCT 61.112 60.000 0.00 0.0 0.00 5.19 R
2407 2501 2.114670 CCGCATGCCACCTACCAAG 61.115 63.158 13.15 0.0 0.00 3.61 R
2634 2728 6.136857 AGCTAGATGTTTACCTCTATGTCCA 58.863 40.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 9.032624 AGTTTAGTATGTTTGGAGAGTTAGCTA 57.967 33.333 0.00 0.00 0.00 3.32
76 77 6.852420 AGTATGTTTGGAGAGTTAGCTACA 57.148 37.500 0.00 0.00 0.00 2.74
79 80 4.628074 TGTTTGGAGAGTTAGCTACACAC 58.372 43.478 0.00 0.00 31.51 3.82
106 107 8.506437 TGTTTTAACTCTCATGTTTAGAGCATG 58.494 33.333 9.28 0.00 43.59 4.06
164 165 4.732285 TTGCATCTTCGAGACTCAAAAC 57.268 40.909 2.82 0.00 0.00 2.43
165 166 3.067106 TGCATCTTCGAGACTCAAAACC 58.933 45.455 2.82 0.00 0.00 3.27
168 169 1.346722 TCTTCGAGACTCAAAACCCCC 59.653 52.381 2.82 0.00 0.00 5.40
172 173 2.173996 TCGAGACTCAAAACCCCCTTTT 59.826 45.455 2.82 0.00 31.77 2.27
176 177 3.704566 AGACTCAAAACCCCCTTTTCAAC 59.295 43.478 0.00 0.00 28.85 3.18
184 185 4.946160 ACCCCCTTTTCAACAGATGATA 57.054 40.909 0.00 0.00 38.03 2.15
185 186 5.472301 ACCCCCTTTTCAACAGATGATAT 57.528 39.130 0.00 0.00 38.03 1.63
190 191 8.605947 CCCCCTTTTCAACAGATGATATAGATA 58.394 37.037 0.00 0.00 38.03 1.98
217 218 1.755179 AATTGCATCTCCACCTTCCG 58.245 50.000 0.00 0.00 0.00 4.30
239 241 5.872617 CCGGAGATGTAAATACAACACTTCA 59.127 40.000 0.00 0.00 39.99 3.02
243 245 8.784043 GGAGATGTAAATACAACACTTCAAGTT 58.216 33.333 0.00 0.00 39.99 2.66
267 269 4.933330 CAAATTTGCATCTCCCTCATCTG 58.067 43.478 5.01 0.00 0.00 2.90
268 270 3.947612 ATTTGCATCTCCCTCATCTGT 57.052 42.857 0.00 0.00 0.00 3.41
269 271 5.378230 AATTTGCATCTCCCTCATCTGTA 57.622 39.130 0.00 0.00 0.00 2.74
270 272 4.412796 TTTGCATCTCCCTCATCTGTAG 57.587 45.455 0.00 0.00 0.00 2.74
271 273 3.319031 TGCATCTCCCTCATCTGTAGA 57.681 47.619 0.00 0.00 0.00 2.59
272 274 3.854437 TGCATCTCCCTCATCTGTAGAT 58.146 45.455 0.00 0.00 34.56 1.98
285 287 5.560148 CATCTGTAGATGTAAAACGCAACC 58.440 41.667 12.61 0.00 45.10 3.77
286 288 3.676172 TCTGTAGATGTAAAACGCAACCG 59.324 43.478 0.00 0.00 41.14 4.44
287 289 2.158058 TGTAGATGTAAAACGCAACCGC 59.842 45.455 0.00 0.00 38.22 5.68
288 290 0.519961 AGATGTAAAACGCAACCGCC 59.480 50.000 0.00 0.00 38.22 6.13
289 291 0.455464 GATGTAAAACGCAACCGCCC 60.455 55.000 0.00 0.00 38.22 6.13
290 292 1.173444 ATGTAAAACGCAACCGCCCA 61.173 50.000 0.00 0.00 38.22 5.36
291 293 1.173444 TGTAAAACGCAACCGCCCAT 61.173 50.000 0.00 0.00 38.22 4.00
292 294 0.455464 GTAAAACGCAACCGCCCATC 60.455 55.000 0.00 0.00 38.22 3.51
293 295 0.889638 TAAAACGCAACCGCCCATCA 60.890 50.000 0.00 0.00 38.22 3.07
294 296 1.739338 AAAACGCAACCGCCCATCAA 61.739 50.000 0.00 0.00 38.22 2.57
295 297 2.414840 AAACGCAACCGCCCATCAAC 62.415 55.000 0.00 0.00 38.22 3.18
296 298 4.114997 CGCAACCGCCCATCAACC 62.115 66.667 0.00 0.00 33.11 3.77
297 299 3.758931 GCAACCGCCCATCAACCC 61.759 66.667 0.00 0.00 0.00 4.11
298 300 2.282816 CAACCGCCCATCAACCCA 60.283 61.111 0.00 0.00 0.00 4.51
299 301 1.682005 CAACCGCCCATCAACCCAT 60.682 57.895 0.00 0.00 0.00 4.00
300 302 1.379843 AACCGCCCATCAACCCATC 60.380 57.895 0.00 0.00 0.00 3.51
301 303 2.148723 AACCGCCCATCAACCCATCA 62.149 55.000 0.00 0.00 0.00 3.07
302 304 1.379710 CCGCCCATCAACCCATCAA 60.380 57.895 0.00 0.00 0.00 2.57
303 305 1.666209 CCGCCCATCAACCCATCAAC 61.666 60.000 0.00 0.00 0.00 3.18
304 306 1.666209 CGCCCATCAACCCATCAACC 61.666 60.000 0.00 0.00 0.00 3.77
305 307 1.666209 GCCCATCAACCCATCAACCG 61.666 60.000 0.00 0.00 0.00 4.44
306 308 0.034574 CCCATCAACCCATCAACCGA 60.035 55.000 0.00 0.00 0.00 4.69
307 309 1.410083 CCCATCAACCCATCAACCGAT 60.410 52.381 0.00 0.00 0.00 4.18
309 311 2.368439 CATCAACCCATCAACCGATGT 58.632 47.619 2.07 0.00 46.54 3.06
310 312 2.577606 TCAACCCATCAACCGATGTT 57.422 45.000 2.07 0.00 46.54 2.71
311 313 2.432444 TCAACCCATCAACCGATGTTC 58.568 47.619 2.07 0.00 46.54 3.18
312 314 2.158559 CAACCCATCAACCGATGTTCA 58.841 47.619 2.07 0.00 46.54 3.18
313 315 2.754552 CAACCCATCAACCGATGTTCAT 59.245 45.455 2.07 0.00 46.54 2.57
314 316 3.085952 ACCCATCAACCGATGTTCATT 57.914 42.857 2.07 0.00 46.54 2.57
315 317 3.430453 ACCCATCAACCGATGTTCATTT 58.570 40.909 2.07 0.00 46.54 2.32
316 318 3.443681 ACCCATCAACCGATGTTCATTTC 59.556 43.478 2.07 0.00 46.54 2.17
317 319 3.443329 CCCATCAACCGATGTTCATTTCA 59.557 43.478 2.07 0.00 46.54 2.69
318 320 4.414852 CCATCAACCGATGTTCATTTCAC 58.585 43.478 2.07 0.00 46.54 3.18
319 321 4.156556 CCATCAACCGATGTTCATTTCACT 59.843 41.667 2.07 0.00 46.54 3.41
320 322 5.335897 CCATCAACCGATGTTCATTTCACTT 60.336 40.000 2.07 0.00 46.54 3.16
321 323 5.356882 TCAACCGATGTTCATTTCACTTC 57.643 39.130 0.00 0.00 30.42 3.01
322 324 4.215399 TCAACCGATGTTCATTTCACTTCC 59.785 41.667 0.00 0.00 30.42 3.46
323 325 2.742053 ACCGATGTTCATTTCACTTCCG 59.258 45.455 0.00 0.00 0.00 4.30
324 326 2.476185 CCGATGTTCATTTCACTTCCGC 60.476 50.000 0.00 0.00 0.00 5.54
325 327 2.774007 GATGTTCATTTCACTTCCGCG 58.226 47.619 0.00 0.00 0.00 6.46
326 328 0.237235 TGTTCATTTCACTTCCGCGC 59.763 50.000 0.00 0.00 0.00 6.86
327 329 0.789383 GTTCATTTCACTTCCGCGCG 60.789 55.000 25.67 25.67 0.00 6.86
328 330 0.946700 TTCATTTCACTTCCGCGCGA 60.947 50.000 34.63 15.16 0.00 5.87
329 331 1.225745 CATTTCACTTCCGCGCGAC 60.226 57.895 34.63 0.00 0.00 5.19
330 332 2.388232 ATTTCACTTCCGCGCGACC 61.388 57.895 34.63 0.00 0.00 4.79
374 376 3.436055 CGGCCGAATTCGCCCAAA 61.436 61.111 25.63 0.00 36.56 3.28
375 377 2.770589 CGGCCGAATTCGCCCAAAT 61.771 57.895 25.63 0.00 36.56 2.32
376 378 1.515487 GGCCGAATTCGCCCAAATT 59.485 52.632 22.07 0.00 36.79 1.82
377 379 0.527600 GGCCGAATTCGCCCAAATTC 60.528 55.000 22.07 3.66 40.63 2.17
381 383 1.548986 GAATTCGCCCAAATTCGCTG 58.451 50.000 0.00 0.00 36.29 5.18
382 384 0.458370 AATTCGCCCAAATTCGCTGC 60.458 50.000 0.00 0.00 0.00 5.25
383 385 2.283472 ATTCGCCCAAATTCGCTGCC 62.283 55.000 0.00 0.00 0.00 4.85
384 386 4.834892 CGCCCAAATTCGCTGCCG 62.835 66.667 0.00 0.00 0.00 5.69
385 387 3.747976 GCCCAAATTCGCTGCCGT 61.748 61.111 0.00 0.00 35.54 5.68
386 388 2.485122 CCCAAATTCGCTGCCGTC 59.515 61.111 0.00 0.00 35.54 4.79
387 389 2.098298 CCAAATTCGCTGCCGTCG 59.902 61.111 0.00 0.00 35.54 5.12
388 390 2.574212 CAAATTCGCTGCCGTCGC 60.574 61.111 0.00 0.00 35.54 5.19
389 391 3.799755 AAATTCGCTGCCGTCGCC 61.800 61.111 0.00 0.00 35.54 5.54
408 410 4.083862 GCCCGACCCCTCTGACAC 62.084 72.222 0.00 0.00 0.00 3.67
409 411 2.283966 CCCGACCCCTCTGACACT 60.284 66.667 0.00 0.00 0.00 3.55
410 412 2.352032 CCCGACCCCTCTGACACTC 61.352 68.421 0.00 0.00 0.00 3.51
411 413 2.352032 CCGACCCCTCTGACACTCC 61.352 68.421 0.00 0.00 0.00 3.85
412 414 2.352032 CGACCCCTCTGACACTCCC 61.352 68.421 0.00 0.00 0.00 4.30
413 415 2.283966 ACCCCTCTGACACTCCCG 60.284 66.667 0.00 0.00 0.00 5.14
414 416 3.775654 CCCCTCTGACACTCCCGC 61.776 72.222 0.00 0.00 0.00 6.13
415 417 3.775654 CCCTCTGACACTCCCGCC 61.776 72.222 0.00 0.00 0.00 6.13
416 418 4.135153 CCTCTGACACTCCCGCCG 62.135 72.222 0.00 0.00 0.00 6.46
417 419 4.803426 CTCTGACACTCCCGCCGC 62.803 72.222 0.00 0.00 0.00 6.53
424 426 4.265056 ACTCCCGCCGCTGGTTTT 62.265 61.111 0.26 0.00 0.00 2.43
425 427 3.737172 CTCCCGCCGCTGGTTTTG 61.737 66.667 0.26 0.00 0.00 2.44
426 428 4.257654 TCCCGCCGCTGGTTTTGA 62.258 61.111 0.26 0.00 0.00 2.69
427 429 4.038080 CCCGCCGCTGGTTTTGAC 62.038 66.667 0.00 0.00 0.00 3.18
428 430 4.038080 CCGCCGCTGGTTTTGACC 62.038 66.667 0.00 0.00 0.00 4.02
429 431 4.383602 CGCCGCTGGTTTTGACCG 62.384 66.667 0.00 0.00 0.00 4.79
430 432 4.700365 GCCGCTGGTTTTGACCGC 62.700 66.667 0.00 0.00 0.00 5.68
431 433 4.038080 CCGCTGGTTTTGACCGCC 62.038 66.667 6.76 0.00 0.00 6.13
432 434 3.283684 CGCTGGTTTTGACCGCCA 61.284 61.111 6.76 0.00 0.00 5.69
434 436 4.157607 CTGGTTTTGACCGCCAGT 57.842 55.556 0.00 0.00 43.42 4.00
435 437 1.949257 CTGGTTTTGACCGCCAGTC 59.051 57.895 0.00 0.00 46.51 3.51
466 468 2.995938 CGCGAATCGGGTGTTTTTC 58.004 52.632 11.67 0.00 35.14 2.29
467 469 0.453782 CGCGAATCGGGTGTTTTTCC 60.454 55.000 11.67 0.00 35.14 3.13
468 470 0.594110 GCGAATCGGGTGTTTTTCCA 59.406 50.000 4.35 0.00 0.00 3.53
469 471 1.664874 GCGAATCGGGTGTTTTTCCAC 60.665 52.381 4.35 0.00 34.52 4.02
474 476 2.333581 GGTGTTTTTCCACCGCCG 59.666 61.111 0.00 0.00 45.03 6.46
475 477 2.354188 GTGTTTTTCCACCGCCGC 60.354 61.111 0.00 0.00 0.00 6.53
476 478 3.597728 TGTTTTTCCACCGCCGCC 61.598 61.111 0.00 0.00 0.00 6.13
477 479 3.597728 GTTTTTCCACCGCCGCCA 61.598 61.111 0.00 0.00 0.00 5.69
478 480 3.597728 TTTTTCCACCGCCGCCAC 61.598 61.111 0.00 0.00 0.00 5.01
479 481 4.572571 TTTTCCACCGCCGCCACT 62.573 61.111 0.00 0.00 0.00 4.00
480 482 2.677765 TTTTTCCACCGCCGCCACTA 62.678 55.000 0.00 0.00 0.00 2.74
481 483 3.599285 TTTCCACCGCCGCCACTAG 62.599 63.158 0.00 0.00 0.00 2.57
483 485 3.849951 CCACCGCCGCCACTAGAT 61.850 66.667 0.00 0.00 0.00 1.98
484 486 2.186903 CACCGCCGCCACTAGATT 59.813 61.111 0.00 0.00 0.00 2.40
485 487 1.883084 CACCGCCGCCACTAGATTC 60.883 63.158 0.00 0.00 0.00 2.52
486 488 2.280186 CCGCCGCCACTAGATTCC 60.280 66.667 0.00 0.00 0.00 3.01
487 489 2.658593 CGCCGCCACTAGATTCCG 60.659 66.667 0.00 0.00 0.00 4.30
488 490 2.967615 GCCGCCACTAGATTCCGC 60.968 66.667 0.00 0.00 0.00 5.54
489 491 2.280186 CCGCCACTAGATTCCGCC 60.280 66.667 0.00 0.00 0.00 6.13
490 492 2.658593 CGCCACTAGATTCCGCCG 60.659 66.667 0.00 0.00 0.00 6.46
491 493 2.967615 GCCACTAGATTCCGCCGC 60.968 66.667 0.00 0.00 0.00 6.53
492 494 2.280186 CCACTAGATTCCGCCGCC 60.280 66.667 0.00 0.00 0.00 6.13
493 495 2.658593 CACTAGATTCCGCCGCCG 60.659 66.667 0.00 0.00 0.00 6.46
494 496 4.587189 ACTAGATTCCGCCGCCGC 62.587 66.667 0.00 0.00 0.00 6.53
511 513 2.279517 CGGCCCTACTCGCATCAC 60.280 66.667 0.00 0.00 0.00 3.06
512 514 2.109181 GGCCCTACTCGCATCACC 59.891 66.667 0.00 0.00 0.00 4.02
513 515 2.279517 GCCCTACTCGCATCACCG 60.280 66.667 0.00 0.00 0.00 4.94
514 516 2.417516 CCCTACTCGCATCACCGG 59.582 66.667 0.00 0.00 0.00 5.28
515 517 2.279517 CCTACTCGCATCACCGGC 60.280 66.667 0.00 0.00 0.00 6.13
516 518 2.786495 CCTACTCGCATCACCGGCT 61.786 63.158 0.00 0.00 0.00 5.52
517 519 1.589993 CTACTCGCATCACCGGCTG 60.590 63.158 0.00 0.00 0.00 4.85
518 520 3.716539 TACTCGCATCACCGGCTGC 62.717 63.158 0.00 7.88 35.02 5.25
520 522 4.471908 TCGCATCACCGGCTGCAT 62.472 61.111 20.23 0.00 38.30 3.96
521 523 3.945434 CGCATCACCGGCTGCATC 61.945 66.667 20.23 0.00 38.30 3.91
522 524 3.589881 GCATCACCGGCTGCATCC 61.590 66.667 16.79 0.00 38.28 3.51
523 525 2.903855 CATCACCGGCTGCATCCC 60.904 66.667 0.00 0.00 0.00 3.85
524 526 4.195334 ATCACCGGCTGCATCCCC 62.195 66.667 0.00 0.00 0.00 4.81
601 665 3.936203 GGCACCACACTCCCGTCA 61.936 66.667 0.00 0.00 0.00 4.35
644 716 3.129502 CCGTCGTCCGCCACTCTA 61.130 66.667 0.00 0.00 34.38 2.43
788 875 1.523758 ACATCTTCCGTTGGAGTTGC 58.476 50.000 0.00 0.00 31.21 4.17
820 914 6.443876 GCAAAAAGCACTTTTAGAGATGTG 57.556 37.500 8.70 3.57 41.45 3.21
821 915 5.403466 GCAAAAAGCACTTTTAGAGATGTGG 59.597 40.000 8.70 0.00 41.45 4.17
871 965 8.655092 TCTTTAAATTTGCATCTTTTATTGGCG 58.345 29.630 0.00 0.00 0.00 5.69
872 966 8.539770 TTTAAATTTGCATCTTTTATTGGCGA 57.460 26.923 0.00 0.00 0.00 5.54
873 967 8.715191 TTAAATTTGCATCTTTTATTGGCGAT 57.285 26.923 0.00 0.00 0.00 4.58
874 968 6.833342 AATTTGCATCTTTTATTGGCGATC 57.167 33.333 0.00 0.00 0.00 3.69
875 969 3.988379 TGCATCTTTTATTGGCGATCC 57.012 42.857 0.00 0.00 0.00 3.36
877 971 4.713553 TGCATCTTTTATTGGCGATCCTA 58.286 39.130 0.00 0.00 0.00 2.94
878 972 5.316167 TGCATCTTTTATTGGCGATCCTAT 58.684 37.500 0.00 0.00 0.00 2.57
880 974 6.939730 TGCATCTTTTATTGGCGATCCTATTA 59.060 34.615 0.00 0.00 0.00 0.98
1040 1134 0.745468 CCCTCCTACCTCTACAACGC 59.255 60.000 0.00 0.00 0.00 4.84
1459 1553 5.910614 AGGTAATTAATAGTGTCACGGTCC 58.089 41.667 0.00 0.00 0.00 4.46
1460 1554 5.659971 AGGTAATTAATAGTGTCACGGTCCT 59.340 40.000 0.00 0.00 0.00 3.85
1596 1690 2.233922 GGCGGTACTCCATATGTATGCT 59.766 50.000 1.24 0.00 30.60 3.79
1611 1705 0.620030 ATGCTGCATGTGGTGGTCTA 59.380 50.000 15.44 0.00 0.00 2.59
1622 1716 0.875059 GGTGGTCTAAGTGTTGCAGC 59.125 55.000 0.00 0.00 0.00 5.25
1942 2036 3.002656 CGCGCTCCAGATATTTCATTGTT 59.997 43.478 5.56 0.00 0.00 2.83
1950 2044 7.839907 TCCAGATATTTCATTGTTTCAAAGGG 58.160 34.615 0.00 0.00 0.00 3.95
2172 2266 1.671054 CGGCATCAGACCAACGGTT 60.671 57.895 0.00 0.00 35.25 4.44
2215 2309 1.893808 CTGTTGAGCCGTGCAGGTT 60.894 57.895 5.57 0.00 43.70 3.50
2245 2339 3.458857 AGAGGTTGAGAGGATGATGCAAT 59.541 43.478 0.00 0.00 0.00 3.56
2312 2406 3.945346 ACGGTTGCAAGATACATGGTAA 58.055 40.909 0.00 0.00 0.00 2.85
2407 2501 4.999311 TCATGTCCAACATATATGCAGAGC 59.001 41.667 12.79 2.02 36.53 4.09
2579 2673 5.126869 TGTTGTGGAAATGTGACATCAAAGT 59.873 36.000 0.00 0.00 0.00 2.66
2631 2725 9.118300 TGTTTGAATTGAATTGCCAGTTTTATT 57.882 25.926 0.00 0.00 0.00 1.40
2634 2728 8.674263 TGAATTGAATTGCCAGTTTTATTTGT 57.326 26.923 0.00 0.00 0.00 2.83
2656 2750 7.348080 TGTGGACATAGAGGTAAACATCTAG 57.652 40.000 9.96 5.56 41.70 2.43
2720 2819 7.781324 TTCCCTTTTTGAAGCTAGATCATTT 57.219 32.000 0.00 0.00 0.00 2.32
2927 3027 7.567571 CCTAGATATCAATTGTACACTTTGCG 58.432 38.462 5.13 0.00 0.00 4.85
2937 3037 9.205916 CAATTGTACACTTTGCGTATACATAAC 57.794 33.333 3.32 0.00 35.59 1.89
2940 3040 6.532302 TGTACACTTTGCGTATACATAACTGG 59.468 38.462 3.32 0.00 30.90 4.00
2946 3046 7.173562 ACTTTGCGTATACATAACTGGAAACAA 59.826 33.333 3.32 0.00 42.06 2.83
3050 3153 2.928757 TGCACTGTTGTTTCAATGCAAC 59.071 40.909 0.54 0.00 45.19 4.17
3288 3392 4.449870 GCTCAAGCTAAGATTGATGTCG 57.550 45.455 0.00 0.00 36.16 4.35
3302 3406 4.106029 TGATGTCGTACTAGCACCTTTC 57.894 45.455 0.00 0.00 0.00 2.62
3355 3459 5.116180 TGGTGAGTACTAGCATGTAATTGC 58.884 41.667 0.00 0.00 43.09 3.56
3365 3469 3.253230 GCATGTAATTGCTCCCAAACAC 58.747 45.455 0.00 0.00 39.57 3.32
3375 3479 5.149973 TGCTCCCAAACACGTTAGTTATA 57.850 39.130 0.00 0.00 0.00 0.98
3468 3574 6.721321 TGTGTACTTGTTACAAAAGCTAAGC 58.279 36.000 0.00 0.00 42.56 3.09
3469 3575 6.540914 TGTGTACTTGTTACAAAAGCTAAGCT 59.459 34.615 0.00 0.00 42.56 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.262678 CCTCGTCTTCTTCCTTCTTCCTTT 60.263 45.833 0.00 0.00 0.00 3.11
16 17 4.457466 AGTCTCTATCCCTCGTCTTCTTC 58.543 47.826 0.00 0.00 0.00 2.87
20 21 4.601084 TGAAAGTCTCTATCCCTCGTCTT 58.399 43.478 0.00 0.00 0.00 3.01
53 54 6.210784 TGTGTAGCTAACTCTCCAAACATACT 59.789 38.462 0.00 0.00 0.00 2.12
74 75 7.391148 AAACATGAGAGTTAAAACAGTGTGT 57.609 32.000 0.00 0.00 0.00 3.72
76 77 8.958119 TCTAAACATGAGAGTTAAAACAGTGT 57.042 30.769 0.00 0.00 0.00 3.55
79 80 8.087982 TGCTCTAAACATGAGAGTTAAAACAG 57.912 34.615 0.00 0.00 42.16 3.16
140 141 5.749596 TTTGAGTCTCGAAGATGCAAAAA 57.250 34.783 0.00 0.00 31.73 1.94
146 147 3.003480 GGGGTTTTGAGTCTCGAAGATG 58.997 50.000 2.74 0.00 33.89 2.90
151 152 1.430992 AAGGGGGTTTTGAGTCTCGA 58.569 50.000 0.00 0.00 0.00 4.04
153 154 3.562182 TGAAAAGGGGGTTTTGAGTCTC 58.438 45.455 0.00 0.00 38.54 3.36
156 157 3.445987 TGTTGAAAAGGGGGTTTTGAGT 58.554 40.909 0.00 0.00 38.54 3.41
164 165 6.841601 TCTATATCATCTGTTGAAAAGGGGG 58.158 40.000 0.00 0.00 38.03 5.40
196 197 2.493278 CGGAAGGTGGAGATGCAATTTT 59.507 45.455 0.00 0.00 0.00 1.82
197 198 2.094675 CGGAAGGTGGAGATGCAATTT 58.905 47.619 0.00 0.00 0.00 1.82
198 199 1.755179 CGGAAGGTGGAGATGCAATT 58.245 50.000 0.00 0.00 0.00 2.32
199 200 3.483954 CGGAAGGTGGAGATGCAAT 57.516 52.632 0.00 0.00 0.00 3.56
209 210 5.293569 GTTGTATTTACATCTCCGGAAGGTG 59.706 44.000 5.23 9.10 43.79 4.00
210 211 5.046159 TGTTGTATTTACATCTCCGGAAGGT 60.046 40.000 5.23 7.37 43.79 3.50
214 215 5.670792 AGTGTTGTATTTACATCTCCGGA 57.329 39.130 2.93 2.93 35.89 5.14
217 218 8.324163 ACTTGAAGTGTTGTATTTACATCTCC 57.676 34.615 0.00 0.00 35.89 3.71
223 224 7.979115 TTGCAACTTGAAGTGTTGTATTTAC 57.021 32.000 0.00 0.00 44.54 2.01
246 248 4.607239 ACAGATGAGGGAGATGCAAATTT 58.393 39.130 0.00 0.00 0.00 1.82
247 249 4.246712 ACAGATGAGGGAGATGCAAATT 57.753 40.909 0.00 0.00 0.00 1.82
248 250 3.947612 ACAGATGAGGGAGATGCAAAT 57.052 42.857 0.00 0.00 0.00 2.32
249 251 4.033009 TCTACAGATGAGGGAGATGCAAA 58.967 43.478 0.00 0.00 0.00 3.68
250 252 3.646534 TCTACAGATGAGGGAGATGCAA 58.353 45.455 0.00 0.00 0.00 4.08
251 253 3.319031 TCTACAGATGAGGGAGATGCA 57.681 47.619 0.00 0.00 0.00 3.96
263 265 4.328983 CGGTTGCGTTTTACATCTACAGAT 59.671 41.667 0.00 0.00 34.56 2.90
264 266 3.676172 CGGTTGCGTTTTACATCTACAGA 59.324 43.478 0.00 0.00 0.00 3.41
265 267 3.723835 GCGGTTGCGTTTTACATCTACAG 60.724 47.826 0.00 0.00 0.00 2.74
266 268 2.158058 GCGGTTGCGTTTTACATCTACA 59.842 45.455 0.00 0.00 0.00 2.74
267 269 2.475022 GGCGGTTGCGTTTTACATCTAC 60.475 50.000 0.00 0.00 44.10 2.59
268 270 1.733360 GGCGGTTGCGTTTTACATCTA 59.267 47.619 0.00 0.00 44.10 1.98
269 271 0.519961 GGCGGTTGCGTTTTACATCT 59.480 50.000 0.00 0.00 44.10 2.90
270 272 0.455464 GGGCGGTTGCGTTTTACATC 60.455 55.000 0.00 0.00 44.10 3.06
271 273 1.173444 TGGGCGGTTGCGTTTTACAT 61.173 50.000 0.00 0.00 44.10 2.29
272 274 1.173444 ATGGGCGGTTGCGTTTTACA 61.173 50.000 0.00 0.00 44.10 2.41
273 275 0.455464 GATGGGCGGTTGCGTTTTAC 60.455 55.000 0.00 0.00 44.10 2.01
274 276 0.889638 TGATGGGCGGTTGCGTTTTA 60.890 50.000 0.00 0.00 44.10 1.52
275 277 1.739338 TTGATGGGCGGTTGCGTTTT 61.739 50.000 0.00 0.00 44.10 2.43
276 278 2.196925 TTGATGGGCGGTTGCGTTT 61.197 52.632 0.00 0.00 44.10 3.60
277 279 2.596046 TTGATGGGCGGTTGCGTT 60.596 55.556 0.00 0.00 44.10 4.84
278 280 3.361977 GTTGATGGGCGGTTGCGT 61.362 61.111 0.00 0.00 44.10 5.24
279 281 4.114997 GGTTGATGGGCGGTTGCG 62.115 66.667 0.00 0.00 44.10 4.85
280 282 3.758931 GGGTTGATGGGCGGTTGC 61.759 66.667 0.00 0.00 41.71 4.17
281 283 1.666209 GATGGGTTGATGGGCGGTTG 61.666 60.000 0.00 0.00 0.00 3.77
282 284 1.379843 GATGGGTTGATGGGCGGTT 60.380 57.895 0.00 0.00 0.00 4.44
283 285 2.148723 TTGATGGGTTGATGGGCGGT 62.149 55.000 0.00 0.00 0.00 5.68
284 286 1.379710 TTGATGGGTTGATGGGCGG 60.380 57.895 0.00 0.00 0.00 6.13
285 287 1.666209 GGTTGATGGGTTGATGGGCG 61.666 60.000 0.00 0.00 0.00 6.13
286 288 1.666209 CGGTTGATGGGTTGATGGGC 61.666 60.000 0.00 0.00 0.00 5.36
287 289 0.034574 TCGGTTGATGGGTTGATGGG 60.035 55.000 0.00 0.00 0.00 4.00
288 290 1.677576 CATCGGTTGATGGGTTGATGG 59.322 52.381 0.00 0.00 46.76 3.51
298 300 5.106157 GGAAGTGAAATGAACATCGGTTGAT 60.106 40.000 0.00 0.00 37.36 2.57
299 301 4.215399 GGAAGTGAAATGAACATCGGTTGA 59.785 41.667 0.00 0.00 37.36 3.18
300 302 4.475944 GGAAGTGAAATGAACATCGGTTG 58.524 43.478 0.00 0.00 37.36 3.77
301 303 3.188460 CGGAAGTGAAATGAACATCGGTT 59.812 43.478 0.00 0.00 40.76 4.44
302 304 2.742053 CGGAAGTGAAATGAACATCGGT 59.258 45.455 0.00 0.00 0.00 4.69
303 305 2.476185 GCGGAAGTGAAATGAACATCGG 60.476 50.000 0.00 0.00 0.00 4.18
304 306 2.774007 GCGGAAGTGAAATGAACATCG 58.226 47.619 0.00 0.00 0.00 3.84
305 307 2.774007 CGCGGAAGTGAAATGAACATC 58.226 47.619 0.00 0.00 46.66 3.06
306 308 1.135689 GCGCGGAAGTGAAATGAACAT 60.136 47.619 8.83 0.00 46.66 2.71
307 309 0.237235 GCGCGGAAGTGAAATGAACA 59.763 50.000 8.83 0.00 46.66 3.18
308 310 0.789383 CGCGCGGAAGTGAAATGAAC 60.789 55.000 24.84 0.00 46.66 3.18
309 311 0.946700 TCGCGCGGAAGTGAAATGAA 60.947 50.000 31.69 1.65 46.66 2.57
310 312 1.373622 TCGCGCGGAAGTGAAATGA 60.374 52.632 31.69 1.90 46.66 2.57
311 313 1.225745 GTCGCGCGGAAGTGAAATG 60.226 57.895 31.69 0.00 46.66 2.32
312 314 2.388232 GGTCGCGCGGAAGTGAAAT 61.388 57.895 31.69 0.00 46.66 2.17
313 315 3.039588 GGTCGCGCGGAAGTGAAA 61.040 61.111 31.69 4.34 46.66 2.69
362 364 1.548986 CAGCGAATTTGGGCGAATTC 58.451 50.000 12.36 12.36 40.80 2.17
363 365 0.458370 GCAGCGAATTTGGGCGAATT 60.458 50.000 0.00 0.00 32.16 2.17
364 366 1.139520 GCAGCGAATTTGGGCGAAT 59.860 52.632 0.00 0.00 0.00 3.34
365 367 2.566010 GCAGCGAATTTGGGCGAA 59.434 55.556 0.00 0.00 0.00 4.70
366 368 3.439540 GGCAGCGAATTTGGGCGA 61.440 61.111 0.00 0.00 0.00 5.54
367 369 4.834892 CGGCAGCGAATTTGGGCG 62.835 66.667 4.04 4.04 42.72 6.13
368 370 3.683587 GACGGCAGCGAATTTGGGC 62.684 63.158 0.00 0.00 0.00 5.36
369 371 2.485122 GACGGCAGCGAATTTGGG 59.515 61.111 0.00 0.00 0.00 4.12
370 372 2.098298 CGACGGCAGCGAATTTGG 59.902 61.111 0.00 0.00 0.00 3.28
371 373 2.574212 GCGACGGCAGCGAATTTG 60.574 61.111 0.00 0.00 39.62 2.32
372 374 3.799755 GGCGACGGCAGCGAATTT 61.800 61.111 17.49 0.00 42.47 1.82
391 393 4.083862 GTGTCAGAGGGGTCGGGC 62.084 72.222 0.00 0.00 0.00 6.13
392 394 2.283966 AGTGTCAGAGGGGTCGGG 60.284 66.667 0.00 0.00 0.00 5.14
393 395 2.352032 GGAGTGTCAGAGGGGTCGG 61.352 68.421 0.00 0.00 0.00 4.79
394 396 2.352032 GGGAGTGTCAGAGGGGTCG 61.352 68.421 0.00 0.00 0.00 4.79
395 397 2.352032 CGGGAGTGTCAGAGGGGTC 61.352 68.421 0.00 0.00 0.00 4.46
396 398 2.283966 CGGGAGTGTCAGAGGGGT 60.284 66.667 0.00 0.00 0.00 4.95
397 399 3.775654 GCGGGAGTGTCAGAGGGG 61.776 72.222 0.00 0.00 0.00 4.79
398 400 3.775654 GGCGGGAGTGTCAGAGGG 61.776 72.222 0.00 0.00 0.00 4.30
399 401 4.135153 CGGCGGGAGTGTCAGAGG 62.135 72.222 0.00 0.00 0.00 3.69
400 402 4.803426 GCGGCGGGAGTGTCAGAG 62.803 72.222 9.78 0.00 0.00 3.35
407 409 4.265056 AAAACCAGCGGCGGGAGT 62.265 61.111 25.94 10.03 0.00 3.85
408 410 3.737172 CAAAACCAGCGGCGGGAG 61.737 66.667 25.94 8.47 0.00 4.30
409 411 4.257654 TCAAAACCAGCGGCGGGA 62.258 61.111 25.94 0.00 0.00 5.14
410 412 4.038080 GTCAAAACCAGCGGCGGG 62.038 66.667 17.86 17.86 0.00 6.13
411 413 4.038080 GGTCAAAACCAGCGGCGG 62.038 66.667 9.78 8.89 45.68 6.13
412 414 4.383602 CGGTCAAAACCAGCGGCG 62.384 66.667 0.51 0.51 46.86 6.46
413 415 4.700365 GCGGTCAAAACCAGCGGC 62.700 66.667 0.00 0.00 46.86 6.53
414 416 4.038080 GGCGGTCAAAACCAGCGG 62.038 66.667 0.00 0.00 46.86 5.52
415 417 3.254014 CTGGCGGTCAAAACCAGCG 62.254 63.158 0.00 0.00 46.86 5.18
416 418 2.644992 CTGGCGGTCAAAACCAGC 59.355 61.111 0.00 0.00 46.86 4.85
418 420 1.890041 CGACTGGCGGTCAAAACCA 60.890 57.895 25.12 0.00 46.86 3.67
419 421 2.943653 CGACTGGCGGTCAAAACC 59.056 61.111 25.12 0.00 44.70 3.27
420 422 2.251371 GCGACTGGCGGTCAAAAC 59.749 61.111 25.12 8.43 44.70 2.43
421 423 2.975799 GGCGACTGGCGGTCAAAA 60.976 61.111 25.12 0.00 44.70 2.44
422 424 4.243008 TGGCGACTGGCGGTCAAA 62.243 61.111 25.12 7.85 44.70 2.69
423 425 4.980805 GTGGCGACTGGCGGTCAA 62.981 66.667 25.12 8.21 44.70 3.18
448 450 0.453782 GGAAAAACACCCGATTCGCG 60.454 55.000 0.00 0.00 40.47 5.87
449 451 0.594110 TGGAAAAACACCCGATTCGC 59.406 50.000 0.00 0.00 0.00 4.70
450 452 2.325509 GTGGAAAAACACCCGATTCG 57.674 50.000 0.00 0.00 35.34 3.34
458 460 2.354188 GCGGCGGTGGAAAAACAC 60.354 61.111 9.78 0.00 40.60 3.32
459 461 3.597728 GGCGGCGGTGGAAAAACA 61.598 61.111 9.78 0.00 0.00 2.83
460 462 3.597728 TGGCGGCGGTGGAAAAAC 61.598 61.111 9.78 0.00 0.00 2.43
461 463 2.677765 TAGTGGCGGCGGTGGAAAAA 62.678 55.000 9.78 0.00 0.00 1.94
462 464 3.179888 TAGTGGCGGCGGTGGAAAA 62.180 57.895 9.78 0.00 0.00 2.29
463 465 3.599285 CTAGTGGCGGCGGTGGAAA 62.599 63.158 9.78 0.00 0.00 3.13
464 466 4.077184 CTAGTGGCGGCGGTGGAA 62.077 66.667 9.78 0.00 0.00 3.53
466 468 3.385749 AATCTAGTGGCGGCGGTGG 62.386 63.158 9.78 0.00 0.00 4.61
467 469 1.883084 GAATCTAGTGGCGGCGGTG 60.883 63.158 9.78 0.00 0.00 4.94
468 470 2.499685 GAATCTAGTGGCGGCGGT 59.500 61.111 9.78 0.00 0.00 5.68
469 471 2.280186 GGAATCTAGTGGCGGCGG 60.280 66.667 9.78 0.00 0.00 6.13
470 472 2.658593 CGGAATCTAGTGGCGGCG 60.659 66.667 0.51 0.51 0.00 6.46
471 473 2.967615 GCGGAATCTAGTGGCGGC 60.968 66.667 0.00 0.00 0.00 6.53
472 474 2.280186 GGCGGAATCTAGTGGCGG 60.280 66.667 0.00 0.00 0.00 6.13
473 475 2.658593 CGGCGGAATCTAGTGGCG 60.659 66.667 0.00 0.00 43.79 5.69
474 476 2.967615 GCGGCGGAATCTAGTGGC 60.968 66.667 9.78 0.00 0.00 5.01
475 477 2.280186 GGCGGCGGAATCTAGTGG 60.280 66.667 9.78 0.00 0.00 4.00
476 478 2.658593 CGGCGGCGGAATCTAGTG 60.659 66.667 25.36 0.00 0.00 2.74
477 479 4.587189 GCGGCGGCGGAATCTAGT 62.587 66.667 33.02 0.00 0.00 2.57
494 496 2.279517 GTGATGCGAGTAGGGCCG 60.280 66.667 0.00 0.00 0.00 6.13
495 497 2.109181 GGTGATGCGAGTAGGGCC 59.891 66.667 0.00 0.00 0.00 5.80
496 498 2.279517 CGGTGATGCGAGTAGGGC 60.280 66.667 0.00 0.00 0.00 5.19
497 499 2.417516 CCGGTGATGCGAGTAGGG 59.582 66.667 0.00 0.00 0.00 3.53
498 500 2.279517 GCCGGTGATGCGAGTAGG 60.280 66.667 1.90 0.00 0.00 3.18
499 501 1.589993 CAGCCGGTGATGCGAGTAG 60.590 63.158 1.90 0.00 0.00 2.57
500 502 2.494445 CAGCCGGTGATGCGAGTA 59.506 61.111 1.90 0.00 0.00 2.59
506 508 2.903855 GGGATGCAGCCGGTGATG 60.904 66.667 16.15 0.58 0.00 3.07
507 509 4.195334 GGGGATGCAGCCGGTGAT 62.195 66.667 16.15 0.00 0.00 3.06
630 695 2.753043 GGGTAGAGTGGCGGACGA 60.753 66.667 0.00 0.00 0.00 4.20
636 703 2.436115 GGTTGCGGGTAGAGTGGC 60.436 66.667 0.00 0.00 0.00 5.01
637 704 2.267961 GGGTTGCGGGTAGAGTGG 59.732 66.667 0.00 0.00 0.00 4.00
719 806 9.451002 CTCTAATAGATGATGCAAATGGAGAAT 57.549 33.333 0.00 0.00 0.00 2.40
720 807 8.435187 ACTCTAATAGATGATGCAAATGGAGAA 58.565 33.333 0.00 0.00 0.00 2.87
760 847 6.151663 TCCAACGGAAGATGTATATCGAAA 57.848 37.500 0.00 0.00 38.38 3.46
764 851 5.177696 GCAACTCCAACGGAAGATGTATATC 59.822 44.000 0.00 0.00 31.15 1.63
820 914 7.214467 TGTAAAACAGGAGATGTGAAAATCC 57.786 36.000 0.00 0.00 43.00 3.01
821 915 8.734386 AGATGTAAAACAGGAGATGTGAAAATC 58.266 33.333 0.00 0.00 43.00 2.17
863 957 7.438160 CGAGCATATTAATAGGATCGCCAATAA 59.562 37.037 27.72 0.00 43.94 1.40
864 958 6.923508 CGAGCATATTAATAGGATCGCCAATA 59.076 38.462 27.72 0.00 43.94 1.90
867 961 4.682787 CGAGCATATTAATAGGATCGCCA 58.317 43.478 27.72 0.00 43.94 5.69
880 974 9.941664 CTCAAATTGTAAATCTTCGAGCATATT 57.058 29.630 0.00 0.00 0.00 1.28
957 1051 5.518847 GCTTGCATGAACGAATACTGTACTA 59.481 40.000 3.33 0.00 0.00 1.82
1058 1152 3.075005 GGAGGCTGCGGTGGTCTA 61.075 66.667 0.00 0.00 0.00 2.59
1596 1690 1.419762 ACACTTAGACCACCACATGCA 59.580 47.619 0.00 0.00 0.00 3.96
1611 1705 1.755179 ACACTTGAGCTGCAACACTT 58.245 45.000 1.02 0.00 31.96 3.16
1622 1716 3.438087 AGGAATTGCATCGAACACTTGAG 59.562 43.478 0.00 0.00 0.00 3.02
1904 1998 1.878775 GCGCTCTGTGCATTTCCTT 59.121 52.632 0.00 0.00 43.06 3.36
1942 2036 3.515104 GCCATCAAATCCTTCCCTTTGAA 59.485 43.478 2.26 0.00 42.72 2.69
1950 2044 3.025978 TGTCCATGCCATCAAATCCTTC 58.974 45.455 0.00 0.00 0.00 3.46
2199 2293 0.602905 AGTAACCTGCACGGCTCAAC 60.603 55.000 2.50 0.00 35.61 3.18
2215 2309 5.193930 TCATCCTCTCAACCTCTCCTAAGTA 59.806 44.000 0.00 0.00 0.00 2.24
2312 2406 1.112315 CCTCTCAGCTACATCGGCCT 61.112 60.000 0.00 0.00 0.00 5.19
2407 2501 2.114670 CCGCATGCCACCTACCAAG 61.115 63.158 13.15 0.00 0.00 3.61
2631 2725 6.620877 AGATGTTTACCTCTATGTCCACAA 57.379 37.500 0.00 0.00 0.00 3.33
2634 2728 6.136857 AGCTAGATGTTTACCTCTATGTCCA 58.863 40.000 0.00 0.00 0.00 4.02
2656 2750 4.830826 ACAACTGGTAAGCACTTTAAGC 57.169 40.909 0.00 0.00 0.00 3.09
2735 2834 4.072131 GACCTTACCAAATCAAGTGCAGA 58.928 43.478 0.00 0.00 0.00 4.26
2770 2869 5.313712 ACACCGACCTCTCAAAAATAACAT 58.686 37.500 0.00 0.00 0.00 2.71
2771 2870 4.710324 ACACCGACCTCTCAAAAATAACA 58.290 39.130 0.00 0.00 0.00 2.41
2772 2871 5.684550 AACACCGACCTCTCAAAAATAAC 57.315 39.130 0.00 0.00 0.00 1.89
2906 3006 9.793245 GTATACGCAAAGTGTACAATTGATATC 57.207 33.333 20.93 0.00 43.98 1.63
2927 3027 9.341899 CAAAAGCTTGTTTCCAGTTATGTATAC 57.658 33.333 0.00 0.00 0.00 1.47
2971 3071 6.718454 ACATCACATCTTCTGTTTTCTCCATT 59.282 34.615 0.00 0.00 35.29 3.16
3020 3123 8.549548 CATTGAAACAACAGTGCATGATAAAAA 58.450 29.630 0.00 0.00 0.00 1.94
3050 3153 9.903682 ACATGAAATATGACACTTCTTTTCTTG 57.096 29.630 0.00 0.00 35.79 3.02
3104 3207 7.947282 TCTTTGAAAAGATTGTCCCGTTTAAT 58.053 30.769 1.31 0.00 39.95 1.40
3177 3280 0.179015 TTTACTGCCGAAGTGCCCAA 60.179 50.000 1.42 0.00 40.26 4.12
3187 3290 0.515127 TTGCATGTCGTTTACTGCCG 59.485 50.000 0.00 0.00 33.74 5.69
3288 3392 2.666994 GTCAAGCGAAAGGTGCTAGTAC 59.333 50.000 1.77 1.77 43.14 2.73
3302 3406 1.194098 CTGAGTTGCTCAAGTCAAGCG 59.806 52.381 17.67 6.30 46.52 4.68
3355 3459 5.583457 CCCTTATAACTAACGTGTTTGGGAG 59.417 44.000 0.00 0.00 32.35 4.30
3375 3479 9.054922 CATGATTGTGTAAAAACATTTTCCCTT 57.945 29.630 0.00 0.00 0.00 3.95
3395 3499 7.951347 AATTAAAGAGACAAGAGCCATGATT 57.049 32.000 0.00 0.00 0.00 2.57
3465 3571 2.517638 TGCAGCACAGCACAGCTT 60.518 55.556 0.00 0.00 40.11 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.