Multiple sequence alignment - TraesCS7B01G142800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G142800 chr7B 100.000 2816 0 0 1 2816 182599487 182596672 0.000000e+00 5201
1 TraesCS7B01G142800 chr7D 96.582 790 26 1 2028 2816 217873285 217874074 0.000000e+00 1308
2 TraesCS7B01G142800 chr7A 94.400 750 36 5 2029 2776 230565161 230565906 0.000000e+00 1147
3 TraesCS7B01G142800 chr4A 77.088 1868 403 17 1 1852 590495561 590497419 0.000000e+00 1055
4 TraesCS7B01G142800 chr4A 75.239 1882 411 39 1 1851 36287942 36286085 0.000000e+00 843
5 TraesCS7B01G142800 chr4A 75.684 987 217 19 2 972 673407071 673406092 3.280000e-129 472
6 TraesCS7B01G142800 chr1A 76.898 1870 407 17 1 1854 541455786 541457646 0.000000e+00 1037
7 TraesCS7B01G142800 chr1A 80.357 1120 198 16 1 1105 147733551 147732439 0.000000e+00 830
8 TraesCS7B01G142800 chr3B 76.373 1875 419 18 1 1859 783795101 783793235 0.000000e+00 987
9 TraesCS7B01G142800 chr3B 76.158 1879 411 31 1 1858 543700932 543699070 0.000000e+00 953
10 TraesCS7B01G142800 chr3B 75.987 1874 428 16 1 1859 13954251 13952385 0.000000e+00 948
11 TraesCS7B01G142800 chr2A 75.375 1868 436 18 1 1852 773570194 773572053 0.000000e+00 880
12 TraesCS7B01G142800 chr6A 75.427 1872 425 29 1 1851 463023196 463021339 0.000000e+00 876
13 TraesCS7B01G142800 chr1D 79.212 1015 200 10 851 1860 142330965 142331973 0.000000e+00 695
14 TraesCS7B01G142800 chr5A 71.360 1037 252 33 2 1005 698493681 698494705 7.850000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G142800 chr7B 182596672 182599487 2815 True 5201 5201 100.000 1 2816 1 chr7B.!!$R1 2815
1 TraesCS7B01G142800 chr7D 217873285 217874074 789 False 1308 1308 96.582 2028 2816 1 chr7D.!!$F1 788
2 TraesCS7B01G142800 chr7A 230565161 230565906 745 False 1147 1147 94.400 2029 2776 1 chr7A.!!$F1 747
3 TraesCS7B01G142800 chr4A 590495561 590497419 1858 False 1055 1055 77.088 1 1852 1 chr4A.!!$F1 1851
4 TraesCS7B01G142800 chr4A 36286085 36287942 1857 True 843 843 75.239 1 1851 1 chr4A.!!$R1 1850
5 TraesCS7B01G142800 chr4A 673406092 673407071 979 True 472 472 75.684 2 972 1 chr4A.!!$R2 970
6 TraesCS7B01G142800 chr1A 541455786 541457646 1860 False 1037 1037 76.898 1 1854 1 chr1A.!!$F1 1853
7 TraesCS7B01G142800 chr1A 147732439 147733551 1112 True 830 830 80.357 1 1105 1 chr1A.!!$R1 1104
8 TraesCS7B01G142800 chr3B 783793235 783795101 1866 True 987 987 76.373 1 1859 1 chr3B.!!$R3 1858
9 TraesCS7B01G142800 chr3B 543699070 543700932 1862 True 953 953 76.158 1 1858 1 chr3B.!!$R2 1857
10 TraesCS7B01G142800 chr3B 13952385 13954251 1866 True 948 948 75.987 1 1859 1 chr3B.!!$R1 1858
11 TraesCS7B01G142800 chr2A 773570194 773572053 1859 False 880 880 75.375 1 1852 1 chr2A.!!$F1 1851
12 TraesCS7B01G142800 chr6A 463021339 463023196 1857 True 876 876 75.427 1 1851 1 chr6A.!!$R1 1850
13 TraesCS7B01G142800 chr1D 142330965 142331973 1008 False 695 695 79.212 851 1860 1 chr1D.!!$F1 1009
14 TraesCS7B01G142800 chr5A 698493681 698494705 1024 False 228 228 71.360 2 1005 1 chr5A.!!$F1 1003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 615 0.037326 GTCCTGACGCATGGACTTGA 60.037 55.0 12.28 0.0 46.65 3.02 F
1557 1582 0.036388 AGTTGCCAATCACGGTCGAT 60.036 50.0 0.00 0.0 0.00 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1600 0.095245 GTGTTGTGATCATCGCCACG 59.905 55.0 0.00 0.00 36.15 4.94 R
2434 2462 0.322726 CACACCATCAGACATGGCCA 60.323 55.0 8.56 8.56 42.82 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 5.239525 GGAAACGATGATAAAGGCTATTGCT 59.760 40.000 0.00 0.00 39.59 3.91
117 118 5.448632 GGGTGTCTTTAAATTGCCTATGTCG 60.449 44.000 0.00 0.00 0.00 4.35
120 121 5.123186 TGTCTTTAAATTGCCTATGTCGGTG 59.877 40.000 0.00 0.00 0.00 4.94
140 141 1.783140 GTGTGACGACTTGAACCGTAC 59.217 52.381 0.00 0.00 39.30 3.67
177 178 0.039618 GGGGTGCATCAGAAGGGAAA 59.960 55.000 0.00 0.00 0.00 3.13
190 204 4.159506 CAGAAGGGAAAAGGAAAACACACA 59.840 41.667 0.00 0.00 0.00 3.72
231 252 3.678529 GCACAAAACAAAAGGAGGCTTGA 60.679 43.478 0.00 0.00 0.00 3.02
244 265 3.197265 GAGGCTTGAGCTTCAGAGATTC 58.803 50.000 9.88 0.00 45.20 2.52
272 293 1.064003 TTAACCAGGCTCTCCTTGCA 58.936 50.000 0.00 0.00 41.93 4.08
274 295 1.708993 AACCAGGCTCTCCTTGCACA 61.709 55.000 0.00 0.00 41.93 4.57
275 296 1.302285 CCAGGCTCTCCTTGCACAT 59.698 57.895 0.00 0.00 41.93 3.21
332 353 1.470890 TGTGCGCAGGTATTAAAAGCC 59.529 47.619 12.22 0.00 0.00 4.35
361 382 2.808315 CGATGGTCGTCTGGAGGG 59.192 66.667 0.00 0.00 34.72 4.30
383 404 0.391130 CGGTCTTCTCCGGAAATGCA 60.391 55.000 5.23 0.00 45.88 3.96
398 419 0.394762 ATGCATCTCCAACGTGGCAT 60.395 50.000 0.00 0.00 37.47 4.40
428 449 1.786937 ATGGTCTCGAGCTCCTGAAT 58.213 50.000 21.03 8.97 0.00 2.57
457 479 0.038166 GTCTGGCATGTTGGGAAGGA 59.962 55.000 0.00 0.00 0.00 3.36
477 499 4.039488 AGGACGTAATATCCGTATTTGGCA 59.961 41.667 0.00 0.00 41.52 4.92
493 515 2.711711 GCATGATCGATGGTTGCCT 58.288 52.632 0.54 0.00 31.99 4.75
500 522 3.068732 TGATCGATGGTTGCCTAGAGAAG 59.931 47.826 0.54 0.00 0.00 2.85
504 526 3.549794 GATGGTTGCCTAGAGAAGCATT 58.450 45.455 15.35 4.70 39.70 3.56
560 582 1.136984 CGACGAGTAGCCGAGCTTT 59.863 57.895 3.71 0.00 40.44 3.51
593 615 0.037326 GTCCTGACGCATGGACTTGA 60.037 55.000 12.28 0.00 46.65 3.02
596 618 1.134580 CCTGACGCATGGACTTGATCT 60.135 52.381 0.00 0.00 0.00 2.75
599 621 2.289631 TGACGCATGGACTTGATCTGTT 60.290 45.455 0.00 0.00 0.00 3.16
625 647 2.636412 CCTCCCAGCAGACGTCGAA 61.636 63.158 10.46 0.00 0.00 3.71
635 657 0.727970 AGACGTCGAAGTGATCTCCG 59.272 55.000 9.23 0.00 0.00 4.63
655 677 2.520020 ATCCGTACATCGCCCCGA 60.520 61.111 0.00 0.00 41.13 5.14
657 679 4.944372 CCGTACATCGCCCCGAGC 62.944 72.222 0.00 0.00 39.91 5.03
660 682 3.536917 TACATCGCCCCGAGCCAG 61.537 66.667 0.00 0.00 39.91 4.85
686 708 4.792804 TCATTGCATGGGCGCCGA 62.793 61.111 22.54 19.14 45.35 5.54
710 732 3.565905 AGAACGGTATCTTCGTCGTTT 57.434 42.857 0.00 0.00 44.30 3.60
738 760 1.890625 TACCGGTTCACCATGGACGG 61.891 60.000 21.47 23.12 46.16 4.79
808 830 2.885266 TCGCGCCATCTAGAAGACTATT 59.115 45.455 0.00 0.00 0.00 1.73
835 858 1.697754 CCCTGCTCCCCCAAGGTAT 60.698 63.158 0.00 0.00 36.75 2.73
837 860 1.281925 CCTGCTCCCCCAAGGTATGT 61.282 60.000 0.00 0.00 36.75 2.29
843 866 1.353022 TCCCCCAAGGTATGTGTGTTC 59.647 52.381 0.00 0.00 36.75 3.18
1015 1039 0.925558 TGCTATGGCCTTGGATTGGA 59.074 50.000 3.32 0.00 37.74 3.53
1032 1056 1.591768 GGAACATTCCTAGGGTGGGA 58.408 55.000 9.46 0.00 44.11 4.37
1035 1059 2.897823 ACATTCCTAGGGTGGGAGAT 57.102 50.000 9.46 0.00 34.06 2.75
1077 1101 1.376466 GCTCTTCACCCTGCTGGAA 59.624 57.895 11.88 0.00 38.00 3.53
1134 1158 2.945668 GACTATGTGGAGGATTTGGCAC 59.054 50.000 0.00 0.00 0.00 5.01
1139 1163 1.002624 GGAGGATTTGGCACGTCCA 60.003 57.895 16.98 3.02 44.85 4.02
1214 1238 6.183360 CGATTCTTGCAGGGGTACATTAATTT 60.183 38.462 0.00 0.00 0.00 1.82
1276 1301 2.871096 AGGAAAAATGGCGGTGTCTA 57.129 45.000 0.00 0.00 0.00 2.59
1290 1315 1.067212 GTGTCTATACCGCAGTCTGGG 59.933 57.143 9.90 9.90 0.00 4.45
1293 1318 2.100879 CTATACCGCAGTCTGGGCCC 62.101 65.000 17.59 17.59 0.00 5.80
1303 1328 2.283173 CTGGGCCCCAAGTTCACC 60.283 66.667 22.27 0.00 30.80 4.02
1317 1342 0.326595 TTCACCATGCGCCTAAGGAA 59.673 50.000 4.18 0.28 0.00 3.36
1323 1348 0.105778 ATGCGCCTAAGGAAGAGAGC 59.894 55.000 4.18 0.00 0.00 4.09
1422 1447 0.249911 GTGGTATGATCCTGCGGGAC 60.250 60.000 18.90 11.70 45.43 4.46
1437 1462 1.332889 GGGACGACCGGGGAAGTATT 61.333 60.000 6.32 0.00 36.97 1.89
1462 1487 6.573664 TTTATAGTGCATGCAGACAACTTT 57.426 33.333 23.41 11.65 0.00 2.66
1463 1488 7.680442 TTTATAGTGCATGCAGACAACTTTA 57.320 32.000 23.41 10.64 0.00 1.85
1478 1503 8.869897 CAGACAACTTTATACATGTGATAACGT 58.130 33.333 9.11 9.31 0.00 3.99
1479 1504 9.431887 AGACAACTTTATACATGTGATAACGTT 57.568 29.630 9.11 5.88 33.76 3.99
1484 1509 8.255206 ACTTTATACATGTGATAACGTTCTGGA 58.745 33.333 9.11 0.00 0.00 3.86
1488 1513 3.678056 TGTGATAACGTTCTGGAAGCT 57.322 42.857 2.82 0.00 0.00 3.74
1491 1516 3.994392 GTGATAACGTTCTGGAAGCTGAA 59.006 43.478 2.82 0.00 0.00 3.02
1495 1520 1.689273 ACGTTCTGGAAGCTGAACTCT 59.311 47.619 11.55 0.00 40.04 3.24
1509 1534 0.963962 AACTCTCGGCGTGTAAGGAA 59.036 50.000 6.85 0.00 0.00 3.36
1557 1582 0.036388 AGTTGCCAATCACGGTCGAT 60.036 50.000 0.00 0.00 0.00 3.59
1575 1600 2.615227 ATCTGGATTGCGTGGAGGCC 62.615 60.000 0.00 0.00 0.00 5.19
1611 1636 3.961480 ACACATTCAGAGGATCGTTCA 57.039 42.857 0.00 0.00 42.67 3.18
1621 1646 0.647410 GGATCGTTCAGTGCATCGTG 59.353 55.000 0.00 0.00 0.00 4.35
1627 1652 3.190849 CAGTGCATCGTGGCCTCG 61.191 66.667 20.92 20.92 0.00 4.63
1651 1676 2.630580 GAGGAGATTAGGAGAATGGCGT 59.369 50.000 0.00 0.00 0.00 5.68
1652 1677 3.041946 AGGAGATTAGGAGAATGGCGTT 58.958 45.455 0.00 0.00 0.00 4.84
1685 1710 7.665974 TGGACGAGAGATCTTATTTGCTCTATA 59.334 37.037 0.00 0.00 37.81 1.31
1686 1711 7.966204 GGACGAGAGATCTTATTTGCTCTATAC 59.034 40.741 0.00 0.00 37.81 1.47
1740 1765 1.105167 CCTCGTATGGGCGTAGGACA 61.105 60.000 0.00 0.00 33.89 4.02
1745 1770 2.533037 TATGGGCGTAGGACACCCCA 62.533 60.000 7.30 7.30 45.91 4.96
1779 1805 0.924090 TCCACTCGGGGATAGACTCA 59.076 55.000 0.00 0.00 37.22 3.41
1803 1830 2.360801 TGTAAGTTTGGCTTTGGCTGAC 59.639 45.455 0.00 0.00 38.57 3.51
1826 1853 5.904362 AAGCCACCTTGATAAATGAGAAC 57.096 39.130 0.00 0.00 0.00 3.01
1837 1864 7.703058 TGATAAATGAGAACCTCCCTTTTTC 57.297 36.000 0.00 0.00 0.00 2.29
1846 1873 0.317160 CTCCCTTTTTCCCCGCAAAC 59.683 55.000 0.00 0.00 0.00 2.93
1876 1903 8.541133 AAAAAGAATGTTTCGAACAAAAGGAA 57.459 26.923 0.00 0.00 45.86 3.36
1877 1904 8.541133 AAAAGAATGTTTCGAACAAAAGGAAA 57.459 26.923 0.00 0.00 45.86 3.13
1878 1905 8.541133 AAAGAATGTTTCGAACAAAAGGAAAA 57.459 26.923 0.00 0.00 45.86 2.29
1879 1906 8.541133 AAGAATGTTTCGAACAAAAGGAAAAA 57.459 26.923 0.00 0.00 45.86 1.94
1905 1932 9.980780 AATAAACAAAAATGTGAAGAAAAACGG 57.019 25.926 0.00 0.00 0.00 4.44
1906 1933 7.428282 AAACAAAAATGTGAAGAAAAACGGT 57.572 28.000 0.00 0.00 0.00 4.83
1907 1934 8.535690 AAACAAAAATGTGAAGAAAAACGGTA 57.464 26.923 0.00 0.00 0.00 4.02
1908 1935 7.749539 ACAAAAATGTGAAGAAAAACGGTAG 57.250 32.000 0.00 0.00 0.00 3.18
1909 1936 6.754675 ACAAAAATGTGAAGAAAAACGGTAGG 59.245 34.615 0.00 0.00 0.00 3.18
1910 1937 5.447624 AAATGTGAAGAAAAACGGTAGGG 57.552 39.130 0.00 0.00 0.00 3.53
1911 1938 2.853705 TGTGAAGAAAAACGGTAGGGG 58.146 47.619 0.00 0.00 0.00 4.79
1912 1939 2.438763 TGTGAAGAAAAACGGTAGGGGA 59.561 45.455 0.00 0.00 0.00 4.81
1913 1940 3.117963 TGTGAAGAAAAACGGTAGGGGAA 60.118 43.478 0.00 0.00 0.00 3.97
1914 1941 3.884693 GTGAAGAAAAACGGTAGGGGAAA 59.115 43.478 0.00 0.00 0.00 3.13
1915 1942 4.338964 GTGAAGAAAAACGGTAGGGGAAAA 59.661 41.667 0.00 0.00 0.00 2.29
1916 1943 4.338964 TGAAGAAAAACGGTAGGGGAAAAC 59.661 41.667 0.00 0.00 0.00 2.43
1917 1944 2.880268 AGAAAAACGGTAGGGGAAAACG 59.120 45.455 0.00 0.00 0.00 3.60
1918 1945 2.636647 AAAACGGTAGGGGAAAACGA 57.363 45.000 0.00 0.00 0.00 3.85
1919 1946 2.174363 AAACGGTAGGGGAAAACGAG 57.826 50.000 0.00 0.00 0.00 4.18
1920 1947 1.341080 AACGGTAGGGGAAAACGAGA 58.659 50.000 0.00 0.00 0.00 4.04
1921 1948 1.341080 ACGGTAGGGGAAAACGAGAA 58.659 50.000 0.00 0.00 0.00 2.87
1922 1949 1.693606 ACGGTAGGGGAAAACGAGAAA 59.306 47.619 0.00 0.00 0.00 2.52
1923 1950 2.104622 ACGGTAGGGGAAAACGAGAAAA 59.895 45.455 0.00 0.00 0.00 2.29
1924 1951 2.740447 CGGTAGGGGAAAACGAGAAAAG 59.260 50.000 0.00 0.00 0.00 2.27
1925 1952 3.555586 CGGTAGGGGAAAACGAGAAAAGA 60.556 47.826 0.00 0.00 0.00 2.52
1926 1953 4.392047 GGTAGGGGAAAACGAGAAAAGAA 58.608 43.478 0.00 0.00 0.00 2.52
1927 1954 4.823442 GGTAGGGGAAAACGAGAAAAGAAA 59.177 41.667 0.00 0.00 0.00 2.52
1928 1955 5.475909 GGTAGGGGAAAACGAGAAAAGAAAT 59.524 40.000 0.00 0.00 0.00 2.17
1929 1956 5.707242 AGGGGAAAACGAGAAAAGAAATC 57.293 39.130 0.00 0.00 0.00 2.17
1930 1957 5.137551 AGGGGAAAACGAGAAAAGAAATCA 58.862 37.500 0.00 0.00 0.00 2.57
1931 1958 5.775195 AGGGGAAAACGAGAAAAGAAATCAT 59.225 36.000 0.00 0.00 0.00 2.45
1932 1959 5.863935 GGGGAAAACGAGAAAAGAAATCATG 59.136 40.000 0.00 0.00 0.00 3.07
1933 1960 6.447162 GGGAAAACGAGAAAAGAAATCATGT 58.553 36.000 0.00 0.00 0.00 3.21
1934 1961 6.582672 GGGAAAACGAGAAAAGAAATCATGTC 59.417 38.462 0.00 0.00 0.00 3.06
1935 1962 6.303259 GGAAAACGAGAAAAGAAATCATGTCG 59.697 38.462 0.00 0.00 0.00 4.35
1936 1963 5.924475 AACGAGAAAAGAAATCATGTCGT 57.076 34.783 0.00 0.00 40.90 4.34
1937 1964 5.517037 ACGAGAAAAGAAATCATGTCGTC 57.483 39.130 0.00 0.00 34.49 4.20
1938 1965 4.389077 ACGAGAAAAGAAATCATGTCGTCC 59.611 41.667 0.00 0.00 34.49 4.79
1939 1966 4.627467 CGAGAAAAGAAATCATGTCGTCCT 59.373 41.667 0.00 0.00 0.00 3.85
1940 1967 5.805486 CGAGAAAAGAAATCATGTCGTCCTA 59.195 40.000 0.00 0.00 0.00 2.94
1941 1968 6.310467 CGAGAAAAGAAATCATGTCGTCCTAA 59.690 38.462 0.00 0.00 0.00 2.69
1942 1969 7.365840 AGAAAAGAAATCATGTCGTCCTAAC 57.634 36.000 0.00 0.00 0.00 2.34
1962 1989 3.842602 CGTCACACGTGGCTACTG 58.157 61.111 21.57 8.69 36.74 2.74
1963 1990 1.733041 CGTCACACGTGGCTACTGG 60.733 63.158 21.57 0.21 36.74 4.00
1964 1991 1.374252 GTCACACGTGGCTACTGGG 60.374 63.158 21.57 0.00 31.34 4.45
1965 1992 2.742372 CACACGTGGCTACTGGGC 60.742 66.667 21.57 0.00 41.27 5.36
1996 2023 3.710722 CTCCCTGAGGCGTGGCTT 61.711 66.667 0.00 0.00 0.00 4.35
1997 2024 2.284331 TCCCTGAGGCGTGGCTTA 60.284 61.111 0.00 0.00 0.00 3.09
1998 2025 2.187946 CCCTGAGGCGTGGCTTAG 59.812 66.667 8.07 8.07 0.00 2.18
1999 2026 2.512515 CCTGAGGCGTGGCTTAGC 60.513 66.667 9.37 0.00 0.00 3.09
2000 2027 2.581354 CTGAGGCGTGGCTTAGCT 59.419 61.111 3.59 0.00 0.00 3.32
2001 2028 1.676678 CCTGAGGCGTGGCTTAGCTA 61.677 60.000 3.59 0.00 0.00 3.32
2002 2029 0.249238 CTGAGGCGTGGCTTAGCTAG 60.249 60.000 3.59 0.00 0.00 3.42
2003 2030 0.970937 TGAGGCGTGGCTTAGCTAGT 60.971 55.000 3.59 0.00 0.00 2.57
2004 2031 0.528684 GAGGCGTGGCTTAGCTAGTG 60.529 60.000 3.59 0.00 0.00 2.74
2005 2032 1.218316 GGCGTGGCTTAGCTAGTGT 59.782 57.895 3.59 0.00 0.00 3.55
2006 2033 0.806492 GGCGTGGCTTAGCTAGTGTC 60.806 60.000 3.59 0.00 0.00 3.67
2007 2034 0.173708 GCGTGGCTTAGCTAGTGTCT 59.826 55.000 3.59 0.00 0.00 3.41
2008 2035 1.799548 GCGTGGCTTAGCTAGTGTCTC 60.800 57.143 3.59 0.00 0.00 3.36
2009 2036 1.532090 CGTGGCTTAGCTAGTGTCTCG 60.532 57.143 3.59 9.31 0.00 4.04
2010 2037 0.456221 TGGCTTAGCTAGTGTCTCGC 59.544 55.000 3.59 0.00 0.00 5.03
2011 2038 0.249114 GGCTTAGCTAGTGTCTCGCC 60.249 60.000 3.59 0.00 0.00 5.54
2012 2039 0.456221 GCTTAGCTAGTGTCTCGCCA 59.544 55.000 0.00 0.00 0.00 5.69
2013 2040 1.799548 GCTTAGCTAGTGTCTCGCCAC 60.800 57.143 0.00 0.00 35.53 5.01
2014 2041 0.450583 TTAGCTAGTGTCTCGCCACG 59.549 55.000 0.00 0.00 40.33 4.94
2015 2042 0.392060 TAGCTAGTGTCTCGCCACGA 60.392 55.000 0.00 0.00 40.33 4.35
2023 2050 2.049156 CTCGCCACGAGCTGAACA 60.049 61.111 3.83 0.00 46.75 3.18
2024 2051 1.446792 CTCGCCACGAGCTGAACAT 60.447 57.895 3.83 0.00 46.75 2.71
2025 2052 0.179137 CTCGCCACGAGCTGAACATA 60.179 55.000 3.83 0.00 46.75 2.29
2026 2053 0.179137 TCGCCACGAGCTGAACATAG 60.179 55.000 0.00 0.00 40.39 2.23
2035 2062 4.089239 TGAACATAGCCGCGCCCA 62.089 61.111 0.00 0.00 0.00 5.36
2063 2090 2.190756 GTGGAACGAGGAGGACGAT 58.809 57.895 0.00 0.00 34.70 3.73
2111 2138 3.524541 GCCACCAAGCAAAAATATCCTG 58.475 45.455 0.00 0.00 0.00 3.86
2119 2146 6.128849 CCAAGCAAAAATATCCTGTGAAAACG 60.129 38.462 0.00 0.00 0.00 3.60
2215 2242 1.979693 GACCACCGCCTCTCTCTGT 60.980 63.158 0.00 0.00 0.00 3.41
2311 2338 2.284699 ACGGAGGAGGGGGTGAAG 60.285 66.667 0.00 0.00 0.00 3.02
2434 2462 1.004918 CACCGCTTCCCGTTTCTCT 60.005 57.895 0.00 0.00 34.38 3.10
2488 2516 6.639279 CGTGGAATTTCGTTTGGTTTTAAGAT 59.361 34.615 0.00 0.00 0.00 2.40
2734 2763 1.495584 GCGGCTTCAAGAACGTGACA 61.496 55.000 0.00 0.00 0.00 3.58
2794 2823 2.359850 GCACGCACCCTTCCATCA 60.360 61.111 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 1.852309 ACATATGTTGGGATGGCCTGA 59.148 47.619 3.32 0.00 0.00 3.86
117 118 0.935196 GGTTCAAGTCGTCACACACC 59.065 55.000 0.00 0.00 0.00 4.16
120 121 1.783140 GTACGGTTCAAGTCGTCACAC 59.217 52.381 0.00 0.00 40.31 3.82
140 141 1.230635 CCACCAGAAGTTGCAGACCG 61.231 60.000 0.00 0.00 0.00 4.79
147 148 0.540365 ATGCACCCCACCAGAAGTTG 60.540 55.000 0.00 0.00 0.00 3.16
177 178 0.759060 GGCCCCTGTGTGTTTTCCTT 60.759 55.000 0.00 0.00 0.00 3.36
202 223 2.354199 CCTTTTGTTTTGTGCGCCAATT 59.646 40.909 4.18 0.00 31.81 2.32
203 224 1.939255 CCTTTTGTTTTGTGCGCCAAT 59.061 42.857 4.18 0.00 31.81 3.16
231 252 1.270907 ACACGGGAATCTCTGAAGCT 58.729 50.000 0.00 0.00 0.00 3.74
244 265 2.093128 AGAGCCTGGTTAAATACACGGG 60.093 50.000 0.00 0.00 0.00 5.28
272 293 2.048023 CAACCGCCATGCCTGATGT 61.048 57.895 0.00 0.00 0.00 3.06
274 295 2.269520 TAGCAACCGCCATGCCTGAT 62.270 55.000 2.26 0.00 44.91 2.90
275 296 2.476852 TTAGCAACCGCCATGCCTGA 62.477 55.000 2.26 0.00 44.91 3.86
353 374 2.203788 AAGACCGTGCCCTCCAGA 60.204 61.111 0.00 0.00 0.00 3.86
383 404 1.750399 GGCATGCCACGTTGGAGAT 60.750 57.895 32.08 0.00 40.96 2.75
406 427 0.309302 CAGGAGCTCGAGACCATACG 59.691 60.000 18.75 5.26 0.00 3.06
428 449 0.179048 CATGCCAGACGATGCCCTTA 60.179 55.000 0.00 0.00 0.00 2.69
445 466 4.502604 CGGATATTACGTCCTTCCCAACAT 60.503 45.833 0.00 0.00 33.46 2.71
477 499 3.234353 TCTCTAGGCAACCATCGATCAT 58.766 45.455 0.00 0.00 37.17 2.45
500 522 0.248621 GTGATGGGTTAGCGCAATGC 60.249 55.000 11.47 0.00 46.98 3.56
504 526 2.270850 GGGTGATGGGTTAGCGCA 59.729 61.111 11.47 0.00 41.83 6.09
509 531 1.998530 CCTGCTGGGTGATGGGTTA 59.001 57.895 0.71 0.00 0.00 2.85
538 560 1.150567 GCTCGGCTACTCGTCGTAGA 61.151 60.000 15.45 0.00 46.98 2.59
550 572 1.302832 CACCTCCAAAAGCTCGGCT 60.303 57.895 0.00 0.00 42.56 5.52
580 602 2.079158 CAACAGATCAAGTCCATGCGT 58.921 47.619 0.00 0.00 0.00 5.24
593 615 2.503356 CTGGGAGGAAGTAGCAACAGAT 59.497 50.000 0.00 0.00 0.00 2.90
596 618 0.324943 GCTGGGAGGAAGTAGCAACA 59.675 55.000 0.00 0.00 36.24 3.33
599 621 0.252239 TCTGCTGGGAGGAAGTAGCA 60.252 55.000 0.00 0.00 43.26 3.49
625 647 0.467474 TACGGATGGCGGAGATCACT 60.467 55.000 0.00 0.00 0.00 3.41
635 657 2.665185 GGGCGATGTACGGATGGC 60.665 66.667 0.00 0.00 42.83 4.40
655 677 1.753141 GCAATGATGTCATCCCTGGCT 60.753 52.381 10.36 0.00 35.10 4.75
657 679 2.061509 TGCAATGATGTCATCCCTGG 57.938 50.000 10.36 0.00 35.10 4.45
686 708 3.190118 ACGACGAAGATACCGTTCTTCTT 59.810 43.478 0.00 7.99 46.18 2.52
704 726 1.739196 GGTAGGCGGACCAAACGAC 60.739 63.158 6.74 0.00 39.51 4.34
710 732 3.384532 GAACCGGTAGGCGGACCA 61.385 66.667 8.00 0.00 42.76 4.02
744 766 2.125310 CGGTAGCCAATGGACGCA 60.125 61.111 2.05 0.00 0.00 5.24
835 858 4.206375 ACAATTCTCCATGTGAACACACA 58.794 39.130 9.83 5.55 45.05 3.72
837 860 4.275689 GTGACAATTCTCCATGTGAACACA 59.724 41.667 10.04 10.04 46.44 3.72
843 866 4.952262 ATTCGTGACAATTCTCCATGTG 57.048 40.909 0.00 0.00 0.00 3.21
852 875 4.836125 AGCAAGTGAATTCGTGACAATT 57.164 36.364 0.04 0.00 0.00 2.32
1015 1039 2.661176 TCTCCCACCCTAGGAATGTT 57.339 50.000 11.48 0.00 31.49 2.71
1023 1047 3.264964 GGTTAACAACATCTCCCACCCTA 59.735 47.826 8.10 0.00 0.00 3.53
1031 1055 3.344515 GGTCCAGGGTTAACAACATCTC 58.655 50.000 8.10 0.00 0.00 2.75
1032 1056 2.290071 CGGTCCAGGGTTAACAACATCT 60.290 50.000 8.10 0.00 0.00 2.90
1035 1059 0.108963 CCGGTCCAGGGTTAACAACA 59.891 55.000 8.10 0.00 0.00 3.33
1077 1101 2.982130 GTCGCCTCATCCAGTGGT 59.018 61.111 9.54 0.00 33.35 4.16
1134 1158 3.894782 TGTGTGATTTCATTGTGGACG 57.105 42.857 0.00 0.00 0.00 4.79
1139 1163 6.638096 TCTTGTCATGTGTGATTTCATTGT 57.362 33.333 0.00 0.00 36.60 2.71
1276 1301 3.480133 GGGCCCAGACTGCGGTAT 61.480 66.667 19.95 0.00 0.00 2.73
1283 1308 1.774217 TGAACTTGGGGCCCAGACT 60.774 57.895 27.05 13.84 33.81 3.24
1290 1315 2.973082 GCATGGTGAACTTGGGGC 59.027 61.111 0.00 0.00 0.00 5.80
1293 1318 0.676466 TAGGCGCATGGTGAACTTGG 60.676 55.000 10.83 0.00 0.00 3.61
1303 1328 1.863267 CTCTCTTCCTTAGGCGCATG 58.137 55.000 10.83 0.00 0.00 4.06
1317 1342 2.780094 CGCGACCCATCTGCTCTCT 61.780 63.158 0.00 0.00 0.00 3.10
1355 1380 1.648467 GCTTCCATCGGTGTTGAGCC 61.648 60.000 0.00 0.00 0.00 4.70
1385 1410 4.821589 CTCCCGCTGAACCCGAGC 62.822 72.222 0.00 0.00 0.00 5.03
1386 1411 4.148825 CCTCCCGCTGAACCCGAG 62.149 72.222 0.00 0.00 0.00 4.63
1392 1417 0.616395 TCATACCACCTCCCGCTGAA 60.616 55.000 0.00 0.00 0.00 3.02
1398 1423 0.398318 GCAGGATCATACCACCTCCC 59.602 60.000 0.00 0.00 31.06 4.30
1422 1447 6.810182 CACTATAAATAATACTTCCCCGGTCG 59.190 42.308 0.00 0.00 0.00 4.79
1425 1450 6.469410 TGCACTATAAATAATACTTCCCCGG 58.531 40.000 0.00 0.00 0.00 5.73
1434 1459 9.559732 AGTTGTCTGCATGCACTATAAATAATA 57.440 29.630 18.46 0.00 0.00 0.98
1437 1462 7.864108 AAGTTGTCTGCATGCACTATAAATA 57.136 32.000 18.46 0.00 0.00 1.40
1456 1481 9.689075 CAGAACGTTATCACATGTATAAAGTTG 57.311 33.333 25.12 17.09 39.76 3.16
1462 1487 6.700081 GCTTCCAGAACGTTATCACATGTATA 59.300 38.462 0.00 0.00 0.00 1.47
1463 1488 5.523916 GCTTCCAGAACGTTATCACATGTAT 59.476 40.000 0.00 0.00 0.00 2.29
1478 1503 1.273606 CCGAGAGTTCAGCTTCCAGAA 59.726 52.381 0.00 0.00 0.00 3.02
1479 1504 0.891373 CCGAGAGTTCAGCTTCCAGA 59.109 55.000 0.00 0.00 0.00 3.86
1484 1509 1.373497 CACGCCGAGAGTTCAGCTT 60.373 57.895 0.00 0.00 0.00 3.74
1488 1513 0.242825 CCTTACACGCCGAGAGTTCA 59.757 55.000 0.00 0.00 0.00 3.18
1491 1516 0.526662 CTTCCTTACACGCCGAGAGT 59.473 55.000 0.00 0.00 0.00 3.24
1495 1520 2.975536 CCCTTCCTTACACGCCGA 59.024 61.111 0.00 0.00 0.00 5.54
1557 1582 2.268920 GCCTCCACGCAATCCAGA 59.731 61.111 0.00 0.00 0.00 3.86
1575 1600 0.095245 GTGTTGTGATCATCGCCACG 59.905 55.000 0.00 0.00 36.15 4.94
1611 1636 3.240134 AACGAGGCCACGATGCACT 62.240 57.895 29.67 1.97 37.03 4.40
1627 1652 4.384940 GCCATTCTCCTAATCTCCTCAAC 58.615 47.826 0.00 0.00 0.00 3.18
1651 1676 1.404391 GATCTCTCGTCCAGCGGTAAA 59.596 52.381 0.00 0.00 41.72 2.01
1652 1677 1.022735 GATCTCTCGTCCAGCGGTAA 58.977 55.000 0.00 0.00 41.72 2.85
1665 1690 8.511321 CGACAGTATAGAGCAAATAAGATCTCT 58.489 37.037 0.00 0.00 39.11 3.10
1673 1698 4.784329 CGAGCGACAGTATAGAGCAAATA 58.216 43.478 0.00 0.00 0.00 1.40
1678 1703 0.308068 TGCGAGCGACAGTATAGAGC 59.692 55.000 0.00 0.00 0.00 4.09
1685 1710 2.412847 GCTTTATTTTGCGAGCGACAGT 60.413 45.455 0.00 0.00 0.00 3.55
1686 1711 2.159653 AGCTTTATTTTGCGAGCGACAG 60.160 45.455 0.00 0.00 39.99 3.51
1745 1770 0.458260 GTGGAACCAAACAGCGGTTT 59.542 50.000 9.29 9.29 46.80 3.27
1779 1805 3.031013 AGCCAAAGCCAAACTTACAACT 58.969 40.909 0.00 0.00 37.75 3.16
1803 1830 5.393461 GGTTCTCATTTATCAAGGTGGCTTG 60.393 44.000 0.00 0.00 35.78 4.01
1816 1843 5.330233 GGGAAAAAGGGAGGTTCTCATTTA 58.670 41.667 0.00 0.00 31.08 1.40
1817 1844 4.160329 GGGAAAAAGGGAGGTTCTCATTT 58.840 43.478 0.00 0.00 31.08 2.32
1826 1853 0.830023 TTTGCGGGGAAAAAGGGAGG 60.830 55.000 0.00 0.00 0.00 4.30
1879 1906 9.980780 CCGTTTTTCTTCACATTTTTGTTTATT 57.019 25.926 0.00 0.00 0.00 1.40
1880 1907 9.157104 ACCGTTTTTCTTCACATTTTTGTTTAT 57.843 25.926 0.00 0.00 0.00 1.40
1881 1908 8.535690 ACCGTTTTTCTTCACATTTTTGTTTA 57.464 26.923 0.00 0.00 0.00 2.01
1882 1909 7.428282 ACCGTTTTTCTTCACATTTTTGTTT 57.572 28.000 0.00 0.00 0.00 2.83
1883 1910 7.276878 CCTACCGTTTTTCTTCACATTTTTGTT 59.723 33.333 0.00 0.00 0.00 2.83
1884 1911 6.754675 CCTACCGTTTTTCTTCACATTTTTGT 59.245 34.615 0.00 0.00 0.00 2.83
1885 1912 6.200097 CCCTACCGTTTTTCTTCACATTTTTG 59.800 38.462 0.00 0.00 0.00 2.44
1886 1913 6.277605 CCCTACCGTTTTTCTTCACATTTTT 58.722 36.000 0.00 0.00 0.00 1.94
1887 1914 5.221362 CCCCTACCGTTTTTCTTCACATTTT 60.221 40.000 0.00 0.00 0.00 1.82
1888 1915 4.279922 CCCCTACCGTTTTTCTTCACATTT 59.720 41.667 0.00 0.00 0.00 2.32
1889 1916 3.824443 CCCCTACCGTTTTTCTTCACATT 59.176 43.478 0.00 0.00 0.00 2.71
1890 1917 3.073356 TCCCCTACCGTTTTTCTTCACAT 59.927 43.478 0.00 0.00 0.00 3.21
1891 1918 2.438763 TCCCCTACCGTTTTTCTTCACA 59.561 45.455 0.00 0.00 0.00 3.58
1892 1919 3.130280 TCCCCTACCGTTTTTCTTCAC 57.870 47.619 0.00 0.00 0.00 3.18
1893 1920 3.860968 TTCCCCTACCGTTTTTCTTCA 57.139 42.857 0.00 0.00 0.00 3.02
1894 1921 4.555313 CGTTTTCCCCTACCGTTTTTCTTC 60.555 45.833 0.00 0.00 0.00 2.87
1895 1922 3.316029 CGTTTTCCCCTACCGTTTTTCTT 59.684 43.478 0.00 0.00 0.00 2.52
1896 1923 2.880268 CGTTTTCCCCTACCGTTTTTCT 59.120 45.455 0.00 0.00 0.00 2.52
1897 1924 2.877786 TCGTTTTCCCCTACCGTTTTTC 59.122 45.455 0.00 0.00 0.00 2.29
1898 1925 2.880268 CTCGTTTTCCCCTACCGTTTTT 59.120 45.455 0.00 0.00 0.00 1.94
1899 1926 2.104622 TCTCGTTTTCCCCTACCGTTTT 59.895 45.455 0.00 0.00 0.00 2.43
1900 1927 1.693606 TCTCGTTTTCCCCTACCGTTT 59.306 47.619 0.00 0.00 0.00 3.60
1901 1928 1.341080 TCTCGTTTTCCCCTACCGTT 58.659 50.000 0.00 0.00 0.00 4.44
1902 1929 1.341080 TTCTCGTTTTCCCCTACCGT 58.659 50.000 0.00 0.00 0.00 4.83
1903 1930 2.460757 TTTCTCGTTTTCCCCTACCG 57.539 50.000 0.00 0.00 0.00 4.02
1904 1931 4.011966 TCTTTTCTCGTTTTCCCCTACC 57.988 45.455 0.00 0.00 0.00 3.18
1905 1932 6.206048 TGATTTCTTTTCTCGTTTTCCCCTAC 59.794 38.462 0.00 0.00 0.00 3.18
1906 1933 6.300703 TGATTTCTTTTCTCGTTTTCCCCTA 58.699 36.000 0.00 0.00 0.00 3.53
1907 1934 5.137551 TGATTTCTTTTCTCGTTTTCCCCT 58.862 37.500 0.00 0.00 0.00 4.79
1908 1935 5.447624 TGATTTCTTTTCTCGTTTTCCCC 57.552 39.130 0.00 0.00 0.00 4.81
1909 1936 6.447162 ACATGATTTCTTTTCTCGTTTTCCC 58.553 36.000 0.00 0.00 0.00 3.97
1910 1937 6.303259 CGACATGATTTCTTTTCTCGTTTTCC 59.697 38.462 0.00 0.00 0.00 3.13
1911 1938 6.851330 ACGACATGATTTCTTTTCTCGTTTTC 59.149 34.615 0.00 0.00 29.15 2.29
1912 1939 6.725246 ACGACATGATTTCTTTTCTCGTTTT 58.275 32.000 0.00 0.00 29.15 2.43
1913 1940 6.300354 ACGACATGATTTCTTTTCTCGTTT 57.700 33.333 0.00 0.00 29.15 3.60
1914 1941 5.107065 GGACGACATGATTTCTTTTCTCGTT 60.107 40.000 0.00 0.00 33.51 3.85
1915 1942 4.389077 GGACGACATGATTTCTTTTCTCGT 59.611 41.667 0.00 0.00 35.92 4.18
1916 1943 4.627467 AGGACGACATGATTTCTTTTCTCG 59.373 41.667 0.00 0.00 0.00 4.04
1917 1944 7.457060 GTTAGGACGACATGATTTCTTTTCTC 58.543 38.462 0.00 0.00 0.00 2.87
1918 1945 7.365840 GTTAGGACGACATGATTTCTTTTCT 57.634 36.000 0.00 0.00 0.00 2.52
1935 1962 2.704758 CGTGTGACGTCGTTAGGAC 58.295 57.895 11.62 2.65 42.48 3.85
1946 1973 1.374252 CCCAGTAGCCACGTGTGAC 60.374 63.158 15.65 9.08 0.00 3.67
1947 1974 3.056458 CCCAGTAGCCACGTGTGA 58.944 61.111 15.65 0.00 0.00 3.58
1948 1975 2.742372 GCCCAGTAGCCACGTGTG 60.742 66.667 15.65 5.43 0.00 3.82
1969 1996 1.414061 CCTCAGGGAGCCATACTGGG 61.414 65.000 0.00 0.00 34.29 4.45
1970 1997 2.049627 GCCTCAGGGAGCCATACTGG 62.050 65.000 0.00 0.00 36.04 4.00
1971 1998 1.449353 GCCTCAGGGAGCCATACTG 59.551 63.158 0.00 0.00 33.58 2.74
1972 1999 2.136878 CGCCTCAGGGAGCCATACT 61.137 63.158 0.00 0.00 33.58 2.12
1973 2000 2.423446 CGCCTCAGGGAGCCATAC 59.577 66.667 0.00 0.00 33.58 2.39
1974 2001 2.041922 ACGCCTCAGGGAGCCATA 60.042 61.111 0.00 0.00 35.77 2.74
1975 2002 3.790437 CACGCCTCAGGGAGCCAT 61.790 66.667 0.00 0.00 35.77 4.40
1979 2006 2.303549 CTAAGCCACGCCTCAGGGAG 62.304 65.000 0.00 0.00 38.41 4.30
1980 2007 2.284331 TAAGCCACGCCTCAGGGA 60.284 61.111 0.00 0.00 33.58 4.20
1981 2008 2.187946 CTAAGCCACGCCTCAGGG 59.812 66.667 0.00 0.00 0.00 4.45
1982 2009 1.676678 TAGCTAAGCCACGCCTCAGG 61.677 60.000 0.00 0.00 0.00 3.86
1983 2010 0.249238 CTAGCTAAGCCACGCCTCAG 60.249 60.000 0.00 0.00 0.00 3.35
1984 2011 0.970937 ACTAGCTAAGCCACGCCTCA 60.971 55.000 0.00 0.00 0.00 3.86
1985 2012 0.528684 CACTAGCTAAGCCACGCCTC 60.529 60.000 0.00 0.00 0.00 4.70
1986 2013 1.258445 ACACTAGCTAAGCCACGCCT 61.258 55.000 0.00 0.00 0.00 5.52
1987 2014 0.806492 GACACTAGCTAAGCCACGCC 60.806 60.000 0.00 0.00 0.00 5.68
1988 2015 0.173708 AGACACTAGCTAAGCCACGC 59.826 55.000 0.00 0.00 0.00 5.34
1989 2016 1.532090 CGAGACACTAGCTAAGCCACG 60.532 57.143 0.00 0.00 0.00 4.94
1990 2017 1.799548 GCGAGACACTAGCTAAGCCAC 60.800 57.143 0.00 0.00 0.00 5.01
1991 2018 0.456221 GCGAGACACTAGCTAAGCCA 59.544 55.000 0.00 0.00 0.00 4.75
1992 2019 0.249114 GGCGAGACACTAGCTAAGCC 60.249 60.000 0.00 0.00 32.82 4.35
1993 2020 0.456221 TGGCGAGACACTAGCTAAGC 59.544 55.000 0.00 0.00 32.82 3.09
1994 2021 1.532090 CGTGGCGAGACACTAGCTAAG 60.532 57.143 7.54 0.00 39.19 2.18
1995 2022 0.450583 CGTGGCGAGACACTAGCTAA 59.549 55.000 7.54 0.00 39.19 3.09
1996 2023 0.392060 TCGTGGCGAGACACTAGCTA 60.392 55.000 7.54 0.00 39.19 3.32
1997 2024 1.674651 TCGTGGCGAGACACTAGCT 60.675 57.895 7.54 0.00 39.19 3.32
1998 2025 2.875485 TCGTGGCGAGACACTAGC 59.125 61.111 7.54 0.00 39.19 3.42
2009 2036 1.432270 GGCTATGTTCAGCTCGTGGC 61.432 60.000 0.00 0.00 41.50 5.01
2010 2037 1.148157 CGGCTATGTTCAGCTCGTGG 61.148 60.000 0.00 0.00 41.50 4.94
2011 2038 1.756375 GCGGCTATGTTCAGCTCGTG 61.756 60.000 0.00 0.00 41.50 4.35
2012 2039 1.519455 GCGGCTATGTTCAGCTCGT 60.519 57.895 0.00 0.00 41.50 4.18
2013 2040 2.580470 CGCGGCTATGTTCAGCTCG 61.580 63.158 0.00 0.00 41.50 5.03
2014 2041 2.875786 GCGCGGCTATGTTCAGCTC 61.876 63.158 8.83 0.00 41.50 4.09
2015 2042 2.892425 GCGCGGCTATGTTCAGCT 60.892 61.111 8.83 0.00 41.50 4.24
2016 2043 3.941836 GGCGCGGCTATGTTCAGC 61.942 66.667 27.05 0.00 41.02 4.26
2017 2044 3.272334 GGGCGCGGCTATGTTCAG 61.272 66.667 32.30 0.00 0.00 3.02
2018 2045 3.613877 TTGGGCGCGGCTATGTTCA 62.614 57.895 32.30 17.53 0.00 3.18
2019 2046 2.822255 TTGGGCGCGGCTATGTTC 60.822 61.111 32.30 14.91 0.00 3.18
2020 2047 2.824041 CTTGGGCGCGGCTATGTT 60.824 61.111 32.30 0.00 0.00 2.71
2021 2048 3.781307 TCTTGGGCGCGGCTATGT 61.781 61.111 32.30 0.00 0.00 2.29
2022 2049 3.272334 GTCTTGGGCGCGGCTATG 61.272 66.667 32.30 26.90 0.00 2.23
2023 2050 3.470888 AGTCTTGGGCGCGGCTAT 61.471 61.111 32.30 8.51 0.00 2.97
2024 2051 4.451150 CAGTCTTGGGCGCGGCTA 62.451 66.667 32.30 25.16 0.00 3.93
2035 2062 0.314302 CTCGTTCCACGTCCAGTCTT 59.686 55.000 0.00 0.00 43.14 3.01
2063 2090 1.148273 GTGTGGGACTTGTGGCTCA 59.852 57.895 0.00 0.00 0.00 4.26
2111 2138 1.864029 GCAGGTTGGCTTCGTTTTCAC 60.864 52.381 0.00 0.00 0.00 3.18
2263 2290 2.360350 AGGCAATGGCAGACCGTG 60.360 61.111 10.05 0.00 43.71 4.94
2294 2321 2.284699 CTTCACCCCCTCCTCCGT 60.285 66.667 0.00 0.00 0.00 4.69
2400 2427 3.707458 TGGTTGGCATACCGGCGA 61.707 61.111 9.30 0.00 45.16 5.54
2434 2462 0.322726 CACACCATCAGACATGGCCA 60.323 55.000 8.56 8.56 42.82 5.36
2488 2516 4.329545 GTGAACCCCTCCTGCGCA 62.330 66.667 10.98 10.98 0.00 6.09
2734 2763 2.391724 TTTGCTCGGGGAAGAACGCT 62.392 55.000 0.00 0.00 0.00 5.07
2776 2805 2.359850 GATGGAAGGGTGCGTGCA 60.360 61.111 0.00 0.00 0.00 4.57
2794 2823 2.754375 GTGGATTGGTGGTCGGGT 59.246 61.111 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.