Multiple sequence alignment - TraesCS7B01G142200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G142200 chr7B 100.000 5761 0 0 601 6361 181039170 181033410 0.000000e+00 10639
1 TraesCS7B01G142200 chr7B 100.000 348 0 0 1 348 181039770 181039423 1.490000e-180 643
2 TraesCS7B01G142200 chr7D 96.548 5504 150 22 601 6086 219291134 219296615 0.000000e+00 9075
3 TraesCS7B01G142200 chr7D 96.552 174 6 0 6188 6361 219296619 219296792 8.070000e-74 289
4 TraesCS7B01G142200 chr7D 81.421 366 15 16 1 348 219290775 219291105 3.810000e-62 250
5 TraesCS7B01G142200 chr7A 95.970 5509 170 28 601 6086 231544065 231549544 0.000000e+00 8896
6 TraesCS7B01G142200 chr7A 98.276 174 3 0 6188 6361 231549548 231549721 8.010000e-79 305
7 TraesCS7B01G142200 chr7A 83.611 360 17 12 1 348 231543702 231544031 3.730000e-77 300
8 TraesCS7B01G142200 chr1D 98.077 104 1 1 6081 6184 473539223 473539121 5.070000e-41 180
9 TraesCS7B01G142200 chr2B 97.143 105 3 0 6081 6185 584129398 584129502 1.820000e-40 178
10 TraesCS7B01G142200 chr2B 95.413 109 5 0 6073 6181 151658629 151658521 2.360000e-39 174
11 TraesCS7B01G142200 chr4B 94.690 113 6 0 6075 6187 541473599 541473711 6.550000e-40 176
12 TraesCS7B01G142200 chr6A 95.455 110 3 2 6082 6189 380939809 380939700 2.360000e-39 174
13 TraesCS7B01G142200 chr5B 93.966 116 6 1 6074 6189 562978765 562978879 2.360000e-39 174
14 TraesCS7B01G142200 chr5B 95.370 108 5 0 6078 6185 502503902 502504009 8.480000e-39 172
15 TraesCS7B01G142200 chr3A 94.643 112 5 1 6073 6184 724949502 724949392 8.480000e-39 172
16 TraesCS7B01G142200 chr3B 93.860 114 5 2 6079 6190 560117404 560117291 3.050000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G142200 chr7B 181033410 181039770 6360 True 5641.000000 10639 100.000 1 6361 2 chr7B.!!$R1 6360
1 TraesCS7B01G142200 chr7D 219290775 219296792 6017 False 3204.666667 9075 91.507 1 6361 3 chr7D.!!$F1 6360
2 TraesCS7B01G142200 chr7A 231543702 231549721 6019 False 3167.000000 8896 92.619 1 6361 3 chr7A.!!$F1 6360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 801 0.039035 TTTCCACCATTTCTCCGGGG 59.961 55.0 0.00 0.0 0.00 5.73 F
1833 1882 0.038166 AGTGTGTGTATTGGGCCAGG 59.962 55.0 6.23 0.0 0.00 4.45 F
2604 2656 0.326595 TTTTCCCGCAGCTGGTATGA 59.673 50.0 17.12 0.0 0.00 2.15 F
4427 4480 0.322366 GCTGGCTCTTTCAGAAGGCT 60.322 55.0 0.00 0.0 34.36 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 1912 0.392336 GCTCTCAGCCTACATGGAGG 59.608 60.0 20.84 20.84 39.88 4.30 R
3089 3141 0.663153 GACACCTTGGCTTGTGACAC 59.337 55.0 0.00 0.00 36.35 3.67 R
4530 4583 1.729586 TTAGTGAGGGAGCACCAGTT 58.270 50.0 1.58 0.00 43.89 3.16 R
6165 6228 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.0 0.00 0.00 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.115911 GTGGTGGTGCGGTTGACAA 61.116 57.895 0.00 0.00 0.00 3.18
26 34 3.670377 GGTGCGGTTGACAAGCCC 61.670 66.667 11.61 3.48 0.00 5.19
29 37 3.723348 GCGGTTGACAAGCCCGAC 61.723 66.667 18.52 8.15 44.41 4.79
33 41 1.070786 GTTGACAAGCCCGACAGGA 59.929 57.895 0.00 0.00 41.02 3.86
111 140 2.895372 CCCGTGCCTATCGCCAAC 60.895 66.667 0.00 0.00 36.24 3.77
112 141 2.186903 CCGTGCCTATCGCCAACT 59.813 61.111 0.00 0.00 36.24 3.16
113 142 1.883084 CCGTGCCTATCGCCAACTC 60.883 63.158 0.00 0.00 36.24 3.01
114 143 2.230940 CGTGCCTATCGCCAACTCG 61.231 63.158 0.00 0.00 36.24 4.18
115 144 2.202878 TGCCTATCGCCAACTCGC 60.203 61.111 0.00 0.00 36.24 5.03
682 720 0.677414 ACTCGGTCTTCGTCTCCCTC 60.677 60.000 0.00 0.00 40.32 4.30
756 801 0.039035 TTTCCACCATTTCTCCGGGG 59.961 55.000 0.00 0.00 0.00 5.73
757 802 1.137594 TTCCACCATTTCTCCGGGGT 61.138 55.000 0.00 0.00 0.00 4.95
766 811 4.351054 CTCCGGGGTGCTTGCCTT 62.351 66.667 0.00 0.00 0.00 4.35
767 812 4.344865 TCCGGGGTGCTTGCCTTC 62.345 66.667 0.00 0.00 0.00 3.46
768 813 4.351054 CCGGGGTGCTTGCCTTCT 62.351 66.667 0.00 0.00 0.00 2.85
786 831 0.610687 CTCCCGCTCCTGTTTTCTCT 59.389 55.000 0.00 0.00 0.00 3.10
787 832 1.825474 CTCCCGCTCCTGTTTTCTCTA 59.175 52.381 0.00 0.00 0.00 2.43
811 856 2.415010 CGAGATGAGGTGAGGCGG 59.585 66.667 0.00 0.00 0.00 6.13
812 857 2.818132 GAGATGAGGTGAGGCGGG 59.182 66.667 0.00 0.00 0.00 6.13
813 858 3.453070 GAGATGAGGTGAGGCGGGC 62.453 68.421 0.00 0.00 0.00 6.13
814 859 4.899239 GATGAGGTGAGGCGGGCG 62.899 72.222 0.00 0.00 0.00 6.13
828 873 2.561373 GGCGGCTCGGTTTTCTTG 59.439 61.111 0.00 0.00 0.00 3.02
896 941 1.833630 ACTGCTCCAATCGAATCTCCA 59.166 47.619 0.00 0.00 0.00 3.86
899 944 1.876322 CTCCAATCGAATCTCCAGCC 58.124 55.000 0.00 0.00 0.00 4.85
983 1031 4.699522 AGAAGCGGGCGTGGGAAC 62.700 66.667 0.00 0.00 0.00 3.62
1263 1311 2.597510 GGGCTGAACCACCACCAC 60.598 66.667 0.00 0.00 42.05 4.16
1272 1320 1.603455 CCACCACCACCATCACCAC 60.603 63.158 0.00 0.00 0.00 4.16
1275 1323 1.603455 CCACCACCATCACCACCAC 60.603 63.158 0.00 0.00 0.00 4.16
1281 1329 1.228521 CCATCACCACCACCAGCAA 60.229 57.895 0.00 0.00 0.00 3.91
1524 1572 3.846405 TTCTGGAGGAGGTGGCGGT 62.846 63.158 0.00 0.00 0.00 5.68
1805 1853 5.316167 GGATTTATGTCTATGATGCCACCA 58.684 41.667 0.00 0.00 0.00 4.17
1833 1882 0.038166 AGTGTGTGTATTGGGCCAGG 59.962 55.000 6.23 0.00 0.00 4.45
1862 1911 7.831691 TGGTTTCTCTTTCCAATGTTTATGA 57.168 32.000 0.00 0.00 0.00 2.15
1863 1912 7.657336 TGGTTTCTCTTTCCAATGTTTATGAC 58.343 34.615 0.00 0.00 0.00 3.06
1867 1916 6.180472 TCTCTTTCCAATGTTTATGACCTCC 58.820 40.000 0.00 0.00 0.00 4.30
2145 2194 5.964477 ACTTGATCCCCTACTGAACTTGATA 59.036 40.000 0.00 0.00 0.00 2.15
2151 2203 5.657302 TCCCCTACTGAACTTGATACTCTTC 59.343 44.000 0.00 0.00 0.00 2.87
2165 2217 7.439157 TGATACTCTTCCACTTGTTGATTTG 57.561 36.000 0.00 0.00 0.00 2.32
2200 2252 6.716628 ACTATTTTTCCTGTCTCTGCATTGAA 59.283 34.615 0.00 0.00 0.00 2.69
2222 2274 6.039941 TGAAAGGTGGTAATGTTGGTAAACTG 59.960 38.462 0.00 0.00 37.19 3.16
2321 2373 1.078848 CCTGGCAAAGTCTCCTCCG 60.079 63.158 0.00 0.00 0.00 4.63
2394 2446 3.196469 TGTCCAAAATGCAACAAAGGTGA 59.804 39.130 0.00 0.00 0.00 4.02
2483 2535 0.396811 CCCCCGAGACCAATACATCC 59.603 60.000 0.00 0.00 0.00 3.51
2576 2628 7.451255 TGTGTTGTAAATTCCCATGAGAAATCT 59.549 33.333 0.00 0.00 0.00 2.40
2604 2656 0.326595 TTTTCCCGCAGCTGGTATGA 59.673 50.000 17.12 0.00 0.00 2.15
2822 2874 1.760029 ACACACACATTTTTCCCCACC 59.240 47.619 0.00 0.00 0.00 4.61
3075 3127 6.992715 ACAGGTAATTTATATCGAAGCTTGCT 59.007 34.615 2.10 0.00 0.00 3.91
3076 3128 7.041780 ACAGGTAATTTATATCGAAGCTTGCTG 60.042 37.037 2.10 0.00 0.00 4.41
3089 3141 3.973657 AGCTTGCTGTTTCAGTTGATTG 58.026 40.909 0.00 0.00 33.43 2.67
3168 3220 5.118510 CGCACAATTTTCCATTTTGTAGGAC 59.881 40.000 0.00 0.00 32.57 3.85
3246 3298 3.458189 GAACCTTCGTGATGAGGTATGG 58.542 50.000 0.00 0.00 33.77 2.74
3697 3749 9.793259 TGTGTTAATTTTCTTCTCTATTCCTGT 57.207 29.630 0.00 0.00 0.00 4.00
3713 3765 1.363744 CTGTTCACTCTTCGATGGGC 58.636 55.000 0.00 0.00 0.00 5.36
3719 3771 2.005451 CACTCTTCGATGGGCTTTGAG 58.995 52.381 0.00 0.00 0.00 3.02
3729 3781 4.576053 CGATGGGCTTTGAGTATGAATTCA 59.424 41.667 11.26 11.26 0.00 2.57
3862 3914 1.896465 AGAAAGACCTCCCTCGTTCTG 59.104 52.381 0.00 0.00 37.53 3.02
3880 3932 3.101437 TCTGAAGGGCCGTAATCTAACA 58.899 45.455 0.00 0.00 0.00 2.41
4010 4063 2.165641 CAGCGCCGGGAAGTATATATCA 59.834 50.000 2.29 0.00 0.00 2.15
4427 4480 0.322366 GCTGGCTCTTTCAGAAGGCT 60.322 55.000 0.00 0.00 34.36 4.58
4530 4583 3.629855 TCTGTTGTTTTCAAATGAGCGGA 59.370 39.130 0.00 0.00 41.76 5.54
4569 4622 9.321562 TCACTAAAACACTACTCGAAATTCTTT 57.678 29.630 0.00 0.00 0.00 2.52
4592 4645 6.531503 TCCAAGAGAAGTATGGTTAGTGAG 57.468 41.667 0.00 0.00 35.66 3.51
4596 4649 4.647399 AGAGAAGTATGGTTAGTGAGGAGC 59.353 45.833 0.00 0.00 0.00 4.70
4982 5035 2.230992 CGATGAAGGGCTATCTCCTGAG 59.769 54.545 0.00 0.00 34.34 3.35
4983 5036 1.418334 TGAAGGGCTATCTCCTGAGC 58.582 55.000 0.00 0.00 38.00 4.26
5006 5059 5.355350 GCTGTATGCTAAGTTCAGGAACAAT 59.645 40.000 14.06 5.53 40.08 2.71
5030 5083 4.455533 GGCTCATACAATGAACTTGTCACA 59.544 41.667 0.00 0.00 44.99 3.58
5040 5093 3.181511 TGAACTTGTCACACGAAAGCTTG 60.182 43.478 0.00 0.00 0.00 4.01
5119 5172 1.216678 TCAACCAGGGAATGTTGGTGT 59.783 47.619 0.00 0.00 46.67 4.16
5225 5278 0.737367 TGCGTTCTCGAGGATTGCTG 60.737 55.000 18.36 2.88 39.71 4.41
5237 5290 2.403132 GATTGCTGGCTCGCCCCTAT 62.403 60.000 5.33 0.00 34.56 2.57
5354 5407 1.555533 GAGAGGTTGGATTTCGGTCCT 59.444 52.381 4.48 0.00 39.12 3.85
5390 5443 5.479724 GGAGGATACCTTATTACTTAGCCGT 59.520 44.000 0.00 0.00 31.76 5.68
5408 5461 4.634443 AGCCGTGTGATGTTATTAAGGAAC 59.366 41.667 0.00 0.00 0.00 3.62
5427 5480 5.861727 GGAACTACCTTACAAGAACCAGAA 58.138 41.667 0.00 0.00 35.41 3.02
5453 5506 3.751698 GTGGAACCAGATCGCTTTTAACT 59.248 43.478 0.00 0.00 0.00 2.24
5454 5507 3.751175 TGGAACCAGATCGCTTTTAACTG 59.249 43.478 0.00 0.00 0.00 3.16
5455 5508 3.426292 GGAACCAGATCGCTTTTAACTGC 60.426 47.826 0.00 0.00 0.00 4.40
5460 5513 3.003480 AGATCGCTTTTAACTGCTCCAC 58.997 45.455 0.00 0.00 0.00 4.02
5477 5530 2.711009 TCCACTTTCCATGGAACTCTGT 59.289 45.455 27.04 18.58 43.43 3.41
5532 5585 2.877866 TGGATAAAACCTTGCCGGAAA 58.122 42.857 5.05 0.00 36.31 3.13
5533 5586 2.823154 TGGATAAAACCTTGCCGGAAAG 59.177 45.455 16.10 16.10 36.31 2.62
5550 5603 4.437390 CGGAAAGAAGTGTTGATATGTGGC 60.437 45.833 0.00 0.00 0.00 5.01
5577 5630 1.452833 GCAGCCAGCTTCTAAGGGG 60.453 63.158 0.00 0.00 41.15 4.79
5579 5632 0.179936 CAGCCAGCTTCTAAGGGGAG 59.820 60.000 0.00 0.00 0.00 4.30
5580 5633 0.043334 AGCCAGCTTCTAAGGGGAGA 59.957 55.000 0.00 0.00 0.00 3.71
5581 5634 1.135960 GCCAGCTTCTAAGGGGAGAT 58.864 55.000 0.00 0.00 0.00 2.75
5582 5635 1.492599 GCCAGCTTCTAAGGGGAGATT 59.507 52.381 0.00 0.00 0.00 2.40
5661 5715 5.183140 GGTTGGCACATAGTAGTTTTGTGAT 59.817 40.000 14.33 0.00 42.59 3.06
5685 5739 1.208293 GGAGGAAGGTACCAAGAGCTG 59.792 57.143 15.94 0.00 0.00 4.24
5730 5784 3.438087 CAGAGGCAACAATAGTTCTGTGG 59.562 47.826 0.00 0.00 35.28 4.17
5748 5802 6.704310 TCTGTGGTTAATCAGTAAGTAACCC 58.296 40.000 10.79 4.70 44.11 4.11
5749 5803 6.270463 TCTGTGGTTAATCAGTAAGTAACCCA 59.730 38.462 10.79 8.04 44.11 4.51
5750 5804 7.023171 TGTGGTTAATCAGTAAGTAACCCAT 57.977 36.000 10.79 0.00 44.11 4.00
5751 5805 6.882140 TGTGGTTAATCAGTAAGTAACCCATG 59.118 38.462 10.79 0.00 44.11 3.66
5752 5806 7.107542 GTGGTTAATCAGTAAGTAACCCATGA 58.892 38.462 10.79 0.00 44.11 3.07
5755 5809 9.185680 GGTTAATCAGTAAGTAACCCATGATTT 57.814 33.333 0.00 0.00 40.54 2.17
5885 5943 6.433093 AGTCCTACTGTTTTGTCTTGTGTTTT 59.567 34.615 0.00 0.00 0.00 2.43
6040 6103 7.092623 TGTTTTGATAGAAAGCCTGGGTATCTA 60.093 37.037 0.00 0.00 0.00 1.98
6042 6105 6.859112 TGATAGAAAGCCTGGGTATCTATC 57.141 41.667 19.45 19.45 44.61 2.08
6046 6109 6.181206 AGAAAGCCTGGGTATCTATCTTTC 57.819 41.667 0.00 5.06 38.59 2.62
6050 6113 6.582929 AGCCTGGGTATCTATCTTTCTTTT 57.417 37.500 0.00 0.00 0.00 2.27
6052 6115 7.057264 AGCCTGGGTATCTATCTTTCTTTTTC 58.943 38.462 0.00 0.00 0.00 2.29
6074 6137 2.028839 TGCATGCATTTCCTTGTCCTTG 60.029 45.455 18.46 0.00 0.00 3.61
6082 6145 8.359875 TGCATTTCCTTGTCCTTGATAAATAA 57.640 30.769 0.00 0.00 0.00 1.40
6083 6146 8.469200 TGCATTTCCTTGTCCTTGATAAATAAG 58.531 33.333 0.00 0.00 0.00 1.73
6084 6147 8.470002 GCATTTCCTTGTCCTTGATAAATAAGT 58.530 33.333 0.00 0.00 0.00 2.24
6088 6151 9.886132 TTCCTTGTCCTTGATAAATAAGTACTC 57.114 33.333 0.00 0.00 0.00 2.59
6090 6153 7.715686 CCTTGTCCTTGATAAATAAGTACTCCC 59.284 40.741 0.00 0.00 0.00 4.30
6091 6154 7.989947 TGTCCTTGATAAATAAGTACTCCCT 57.010 36.000 0.00 0.00 0.00 4.20
6092 6155 8.019656 TGTCCTTGATAAATAAGTACTCCCTC 57.980 38.462 0.00 0.00 0.00 4.30
6093 6156 7.070821 TGTCCTTGATAAATAAGTACTCCCTCC 59.929 40.741 0.00 0.00 0.00 4.30
6094 6157 6.267014 TCCTTGATAAATAAGTACTCCCTCCG 59.733 42.308 0.00 0.00 0.00 4.63
6095 6158 6.041751 CCTTGATAAATAAGTACTCCCTCCGT 59.958 42.308 0.00 0.00 0.00 4.69
6096 6159 6.645790 TGATAAATAAGTACTCCCTCCGTC 57.354 41.667 0.00 0.00 0.00 4.79
6097 6160 5.537674 TGATAAATAAGTACTCCCTCCGTCC 59.462 44.000 0.00 0.00 0.00 4.79
6098 6161 2.378378 ATAAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
6099 6162 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
6100 6163 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
6101 6164 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
6102 6165 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
6103 6166 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
6104 6167 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
6105 6168 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
6106 6169 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
6107 6170 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
6108 6171 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
6109 6172 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
6110 6173 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
6111 6174 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
6112 6175 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
6113 6176 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
6114 6177 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
6115 6178 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
6116 6179 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
6117 6180 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
6118 6181 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
6119 6182 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
6120 6183 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
6121 6184 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
6122 6185 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
6123 6186 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
6124 6187 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
6125 6188 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
6126 6189 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
6127 6190 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
6128 6191 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
6129 6192 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
6130 6193 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
6131 6194 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
6132 6195 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
6169 6232 8.934023 ATAAAGTTGAGACACTTATTTTGGGA 57.066 30.769 0.00 0.00 35.87 4.37
6170 6233 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
6171 6234 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
6172 6235 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
6173 6236 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
6174 6237 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
6175 6238 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
6176 6239 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
6177 6240 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
6178 6241 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
6179 6242 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
6180 6243 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
6181 6244 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
6182 6245 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
6183 6246 0.178926 TTGGGACGGAGGGAGTACAA 60.179 55.000 0.00 0.00 0.00 2.41
6184 6247 0.042131 TGGGACGGAGGGAGTACAAT 59.958 55.000 0.00 0.00 0.00 2.71
6185 6248 1.288633 TGGGACGGAGGGAGTACAATA 59.711 52.381 0.00 0.00 0.00 1.90
6186 6249 2.292389 TGGGACGGAGGGAGTACAATAA 60.292 50.000 0.00 0.00 0.00 1.40
6220 6283 1.798223 CTGATTCGCTTCCGTGTTTGA 59.202 47.619 0.00 0.00 35.54 2.69
6325 6388 4.429212 CCGTGTGTGGATCGCCGA 62.429 66.667 0.00 0.00 36.79 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 53 0.108662 TACGACTGATGCTGCTGGTG 60.109 55.000 0.00 0.00 0.00 4.17
46 54 0.108615 GTACGACTGATGCTGCTGGT 60.109 55.000 0.00 0.00 0.00 4.00
231 260 4.148645 GAGGGAAAGAACGCGCGC 62.149 66.667 32.58 23.91 0.00 6.86
232 261 2.432628 AGAGGGAAAGAACGCGCG 60.433 61.111 30.96 30.96 0.00 6.86
233 262 2.445438 CGAGAGGGAAAGAACGCGC 61.445 63.158 5.73 0.00 0.00 6.86
234 263 2.445438 GCGAGAGGGAAAGAACGCG 61.445 63.158 3.53 3.53 37.06 6.01
235 264 2.101233 GGCGAGAGGGAAAGAACGC 61.101 63.158 0.00 0.00 44.18 4.84
236 265 1.448013 GGGCGAGAGGGAAAGAACG 60.448 63.158 0.00 0.00 0.00 3.95
237 266 1.078356 GGGGCGAGAGGGAAAGAAC 60.078 63.158 0.00 0.00 0.00 3.01
238 267 1.229529 AGGGGCGAGAGGGAAAGAA 60.230 57.895 0.00 0.00 0.00 2.52
239 268 1.990060 CAGGGGCGAGAGGGAAAGA 60.990 63.158 0.00 0.00 0.00 2.52
240 269 2.586792 CAGGGGCGAGAGGGAAAG 59.413 66.667 0.00 0.00 0.00 2.62
241 270 3.717294 GCAGGGGCGAGAGGGAAA 61.717 66.667 0.00 0.00 0.00 3.13
633 666 0.462225 ATCGAGCCGAGACGAAGAGA 60.462 55.000 0.00 0.00 39.91 3.10
689 727 2.444895 GCGAGAGGGGTGAGGGAT 60.445 66.667 0.00 0.00 0.00 3.85
756 801 3.435186 GCGGGAGAAGGCAAGCAC 61.435 66.667 0.00 0.00 0.00 4.40
757 802 3.612247 GAGCGGGAGAAGGCAAGCA 62.612 63.158 0.00 0.00 0.00 3.91
766 811 0.608640 GAGAAAACAGGAGCGGGAGA 59.391 55.000 0.00 0.00 0.00 3.71
767 812 0.610687 AGAGAAAACAGGAGCGGGAG 59.389 55.000 0.00 0.00 0.00 4.30
768 813 1.549170 GTAGAGAAAACAGGAGCGGGA 59.451 52.381 0.00 0.00 0.00 5.14
786 831 2.520982 CCTCATCTCGCCCCCGTA 60.521 66.667 0.00 0.00 35.54 4.02
787 832 4.779733 ACCTCATCTCGCCCCCGT 62.780 66.667 0.00 0.00 35.54 5.28
811 856 2.561373 CAAGAAAACCGAGCCGCC 59.439 61.111 0.00 0.00 0.00 6.13
812 857 2.126850 GCAAGAAAACCGAGCCGC 60.127 61.111 0.00 0.00 0.00 6.53
813 858 2.173382 CGCAAGAAAACCGAGCCG 59.827 61.111 0.00 0.00 43.02 5.52
814 859 2.561373 CCGCAAGAAAACCGAGCC 59.439 61.111 0.00 0.00 43.02 4.70
815 860 1.964373 TCCCGCAAGAAAACCGAGC 60.964 57.895 0.00 0.00 43.02 5.03
816 861 0.602905 AGTCCCGCAAGAAAACCGAG 60.603 55.000 0.00 0.00 43.02 4.63
817 862 0.179040 AAGTCCCGCAAGAAAACCGA 60.179 50.000 0.00 0.00 43.02 4.69
818 863 0.237498 GAAGTCCCGCAAGAAAACCG 59.763 55.000 0.00 0.00 43.02 4.44
875 920 2.237143 TGGAGATTCGATTGGAGCAGTT 59.763 45.455 0.00 0.00 0.00 3.16
1263 1311 1.228521 TTGCTGGTGGTGGTGATGG 60.229 57.895 0.00 0.00 0.00 3.51
1366 1414 4.161295 CGATGCCTCCTCCCGCAA 62.161 66.667 0.00 0.00 38.75 4.85
1805 1853 4.563580 CCCAATACACACACTAGAGCAACT 60.564 45.833 0.00 0.00 0.00 3.16
1848 1897 5.579047 ACATGGAGGTCATAAACATTGGAA 58.421 37.500 0.00 0.00 34.12 3.53
1862 1911 1.786937 CTCTCAGCCTACATGGAGGT 58.213 55.000 25.38 9.45 39.02 3.85
1863 1912 0.392336 GCTCTCAGCCTACATGGAGG 59.608 60.000 20.84 20.84 39.88 4.30
1867 1916 5.121811 ACTAAAATGCTCTCAGCCTACATG 58.878 41.667 0.00 0.00 41.51 3.21
1982 2031 4.953868 CGCCGTCGGTTGTGTCCA 62.954 66.667 13.94 0.00 0.00 4.02
2145 2194 5.067805 GGTTCAAATCAACAAGTGGAAGAGT 59.932 40.000 0.00 0.00 0.00 3.24
2151 2203 4.916983 TCAGGTTCAAATCAACAAGTGG 57.083 40.909 0.00 0.00 0.00 4.00
2165 2217 8.794335 AGACAGGAAAAATAGTAATCAGGTTC 57.206 34.615 0.00 0.00 0.00 3.62
2200 2252 4.279922 GCAGTTTACCAACATTACCACCTT 59.720 41.667 0.00 0.00 35.05 3.50
2222 2274 2.217038 TATCGGAGGGATGCTGGGC 61.217 63.158 0.00 0.00 36.55 5.36
2321 2373 4.565564 GCATTCAAATCAATGGCTTCTGAC 59.434 41.667 0.00 0.00 34.75 3.51
2394 2446 0.671781 GGCACAGTCTGCTTGTCGAT 60.672 55.000 0.00 0.00 46.25 3.59
2432 2484 4.180057 CAAGAGCACCAGATAGAACTGTC 58.820 47.826 0.00 0.00 36.30 3.51
2576 2628 2.010043 GCTGCGGGAAAAGGTCGAATA 61.010 52.381 0.00 0.00 0.00 1.75
2604 2656 1.879575 TGGGTGCTGCTACTCCTTAT 58.120 50.000 0.00 0.00 0.00 1.73
2822 2874 4.701956 AATGCCTTCATTTACTGAACGG 57.298 40.909 0.00 0.00 39.78 4.44
2843 2895 2.035961 GTCAGCAATACGAGGATGCCTA 59.964 50.000 0.00 0.00 40.93 3.93
3027 3079 6.434965 TGTCCATCTGAATTTGATGTTGATGT 59.565 34.615 16.14 0.00 39.54 3.06
3075 3127 5.635417 TTGTGACACAATCAACTGAAACA 57.365 34.783 17.02 0.00 39.72 2.83
3076 3128 4.500477 GCTTGTGACACAATCAACTGAAAC 59.500 41.667 20.86 0.00 39.72 2.78
3089 3141 0.663153 GACACCTTGGCTTGTGACAC 59.337 55.000 0.00 0.00 36.35 3.67
3168 3220 7.657761 AGCTTGAATATAATCTTTCCAGTACGG 59.342 37.037 0.00 0.00 0.00 4.02
3237 3289 0.981183 AGTTTCGTGGCCATACCTCA 59.019 50.000 9.72 0.00 40.22 3.86
3525 3577 7.543520 GGAGGAAATTTTCTTCAAGCTACATTG 59.456 37.037 19.24 0.00 37.50 2.82
3530 3582 6.824305 CTGGAGGAAATTTTCTTCAAGCTA 57.176 37.500 19.24 3.65 37.50 3.32
3697 3749 2.038426 TCAAAGCCCATCGAAGAGTGAA 59.962 45.455 0.00 0.00 43.63 3.18
3713 3765 9.695526 TCAACCAAAATGAATTCATACTCAAAG 57.304 29.630 21.00 9.91 35.10 2.77
3862 3914 3.813724 GGATTGTTAGATTACGGCCCTTC 59.186 47.826 0.00 0.00 0.00 3.46
3880 3932 1.921869 CTTACTGGGTGCCCGGGATT 61.922 60.000 29.31 0.00 46.47 3.01
3926 3978 7.582667 AGCAGGAAATAATTACAATACCCAC 57.417 36.000 0.00 0.00 0.00 4.61
3927 3979 7.836685 TCAAGCAGGAAATAATTACAATACCCA 59.163 33.333 0.00 0.00 0.00 4.51
3941 3994 3.760684 GAGTCAATGGTCAAGCAGGAAAT 59.239 43.478 0.00 0.00 0.00 2.17
3995 4048 8.804204 AGTACCTCTTTTGATATATACTTCCCG 58.196 37.037 0.00 0.00 0.00 5.14
4010 4063 5.148651 ACGCTGAACATAGTACCTCTTTT 57.851 39.130 0.00 0.00 0.00 2.27
4313 4366 2.125673 ACATCCGGAAACCGCGAG 60.126 61.111 9.01 0.00 46.86 5.03
4325 4378 3.258872 CCTGATCATCTGGAGAGACATCC 59.741 52.174 4.51 0.00 37.65 3.51
4464 4517 8.250332 AGTAGAGAACTGAATCAACTCTGAATC 58.750 37.037 17.78 9.78 36.93 2.52
4530 4583 1.729586 TTAGTGAGGGAGCACCAGTT 58.270 50.000 1.58 0.00 43.89 3.16
4569 4622 5.422331 CCTCACTAACCATACTTCTCTTGGA 59.578 44.000 0.00 0.00 34.52 3.53
4592 4645 3.005684 CCAGAGTCTCATGTGATAGCTCC 59.994 52.174 1.94 0.00 0.00 4.70
4596 4649 5.565242 GCATCTCCAGAGTCTCATGTGATAG 60.565 48.000 1.94 2.31 0.00 2.08
4691 4744 5.344743 TGTCAGGGCAAATTACAACAAAA 57.655 34.783 0.00 0.00 0.00 2.44
4982 5035 4.253685 TGTTCCTGAACTTAGCATACAGC 58.746 43.478 11.03 0.00 41.67 4.40
4983 5036 6.183360 CCATTGTTCCTGAACTTAGCATACAG 60.183 42.308 11.03 0.00 41.67 2.74
4991 5044 4.365514 TGAGCCATTGTTCCTGAACTTA 57.634 40.909 11.03 0.70 41.67 2.24
4993 5046 2.957402 TGAGCCATTGTTCCTGAACT 57.043 45.000 11.03 0.00 41.67 3.01
5030 5083 0.468226 TCCTGTCCACAAGCTTTCGT 59.532 50.000 0.00 0.00 0.00 3.85
5040 5093 2.420687 CCTGGCTATTCTTCCTGTCCAC 60.421 54.545 0.00 0.00 0.00 4.02
5119 5172 4.727792 TGGATCCCAGATGCATTATTCA 57.272 40.909 9.90 0.00 0.00 2.57
5225 5278 0.912486 AATGGATATAGGGGCGAGCC 59.088 55.000 5.37 5.37 0.00 4.70
5354 5407 9.615660 AATAAGGTATCCTCCAATGTCTATGTA 57.384 33.333 0.00 0.00 30.89 2.29
5373 5426 5.105064 ACATCACACGGCTAAGTAATAAGGT 60.105 40.000 0.00 0.00 0.00 3.50
5408 5461 5.221661 ACACCTTCTGGTTCTTGTAAGGTAG 60.222 44.000 4.84 3.48 46.28 3.18
5443 5496 3.555518 GAAAGTGGAGCAGTTAAAAGCG 58.444 45.455 0.00 0.00 35.48 4.68
5453 5506 1.425066 AGTTCCATGGAAAGTGGAGCA 59.575 47.619 28.64 0.10 45.95 4.26
5454 5507 2.087646 GAGTTCCATGGAAAGTGGAGC 58.912 52.381 28.64 14.20 45.85 4.70
5455 5508 3.244700 ACAGAGTTCCATGGAAAGTGGAG 60.245 47.826 28.64 17.54 45.85 3.86
5460 5513 3.423539 TGGACAGAGTTCCATGGAAAG 57.576 47.619 28.64 19.49 41.00 2.62
5484 5537 9.979578 GCAAATATTACATTTCACCATCCATAA 57.020 29.630 0.00 0.00 0.00 1.90
5485 5538 9.140874 TGCAAATATTACATTTCACCATCCATA 57.859 29.630 0.00 0.00 0.00 2.74
5532 5585 3.610040 TCGCCACATATCAACACTTCT 57.390 42.857 0.00 0.00 0.00 2.85
5533 5586 5.984233 TTATCGCCACATATCAACACTTC 57.016 39.130 0.00 0.00 0.00 3.01
5577 5630 6.660949 TCCCCTTTTTCTTGATTCTCAATCTC 59.339 38.462 0.00 0.00 35.59 2.75
5579 5632 6.840780 TCCCCTTTTTCTTGATTCTCAATC 57.159 37.500 0.00 0.00 35.59 2.67
5580 5633 7.310858 CCAATCCCCTTTTTCTTGATTCTCAAT 60.311 37.037 0.00 0.00 35.59 2.57
5581 5634 6.014327 CCAATCCCCTTTTTCTTGATTCTCAA 60.014 38.462 0.00 0.00 34.79 3.02
5582 5635 5.481473 CCAATCCCCTTTTTCTTGATTCTCA 59.519 40.000 0.00 0.00 0.00 3.27
5661 5715 1.435563 TCTTGGTACCTTCCTCCCTCA 59.564 52.381 14.36 0.00 0.00 3.86
5685 5739 5.412594 TGTCTTATTGCTCTTGACATTGACC 59.587 40.000 0.00 0.00 33.45 4.02
5748 5802 6.925165 ACTTACACCAGCAAAAAGAAATCATG 59.075 34.615 0.00 0.00 0.00 3.07
5749 5803 6.925165 CACTTACACCAGCAAAAAGAAATCAT 59.075 34.615 0.00 0.00 0.00 2.45
5750 5804 6.127479 ACACTTACACCAGCAAAAAGAAATCA 60.127 34.615 0.00 0.00 0.00 2.57
5751 5805 6.198966 CACACTTACACCAGCAAAAAGAAATC 59.801 38.462 0.00 0.00 0.00 2.17
5752 5806 6.042143 CACACTTACACCAGCAAAAAGAAAT 58.958 36.000 0.00 0.00 0.00 2.17
5755 5809 4.265893 TCACACTTACACCAGCAAAAAGA 58.734 39.130 0.00 0.00 0.00 2.52
5756 5810 4.630894 TCACACTTACACCAGCAAAAAG 57.369 40.909 0.00 0.00 0.00 2.27
5863 5917 7.908601 GTCTAAAACACAAGACAAAACAGTAGG 59.091 37.037 0.00 0.00 41.46 3.18
5864 5918 7.634817 CGTCTAAAACACAAGACAAAACAGTAG 59.365 37.037 3.65 0.00 41.83 2.57
5885 5943 0.396695 CTTCCCCCTGCTACCGTCTA 60.397 60.000 0.00 0.00 0.00 2.59
6006 6064 5.882557 GGCTTTCTATCAAAACAGGATGAGA 59.117 40.000 0.00 0.00 39.69 3.27
6007 6065 5.884792 AGGCTTTCTATCAAAACAGGATGAG 59.115 40.000 0.00 0.00 39.69 2.90
6008 6066 5.649395 CAGGCTTTCTATCAAAACAGGATGA 59.351 40.000 0.00 0.00 39.69 2.92
6009 6067 5.163581 CCAGGCTTTCTATCAAAACAGGATG 60.164 44.000 0.00 0.00 46.00 3.51
6010 6068 4.952335 CCAGGCTTTCTATCAAAACAGGAT 59.048 41.667 0.00 0.00 0.00 3.24
6040 6103 6.370718 GGAAATGCATGCAGAAAAAGAAAGAT 59.629 34.615 26.69 0.61 0.00 2.40
6042 6105 5.699458 AGGAAATGCATGCAGAAAAAGAAAG 59.301 36.000 26.69 0.00 0.00 2.62
6046 6109 4.753107 ACAAGGAAATGCATGCAGAAAAAG 59.247 37.500 26.69 14.60 0.00 2.27
6050 6113 2.231964 GGACAAGGAAATGCATGCAGAA 59.768 45.455 26.69 1.91 0.00 3.02
6052 6115 1.822990 AGGACAAGGAAATGCATGCAG 59.177 47.619 26.69 12.73 0.00 4.41
6074 6137 5.047448 GGGACGGAGGGAGTACTTATTTATC 60.047 48.000 0.00 0.00 0.00 1.75
6082 6145 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
6083 6146 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
6084 6147 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
6085 6148 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
6086 6149 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
6088 6151 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
6090 6153 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
6091 6154 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
6092 6155 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
6093 6156 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
6094 6157 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
6095 6158 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
6096 6159 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
6097 6160 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
6098 6161 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
6099 6162 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
6100 6163 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
6101 6164 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
6102 6165 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
6103 6166 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
6104 6167 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
6105 6168 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
6106 6169 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
6107 6170 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
6144 6207 8.793592 GTCCCAAAATAAGTGTCTCAACTTTAT 58.206 33.333 0.00 0.00 40.77 1.40
6145 6208 7.041644 CGTCCCAAAATAAGTGTCTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
6146 6209 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
6147 6210 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
6148 6211 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
6149 6212 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
6150 6213 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
6151 6214 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
6152 6215 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
6153 6216 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
6154 6217 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
6155 6218 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
6156 6219 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
6157 6220 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
6158 6221 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
6159 6222 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
6160 6223 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
6161 6224 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
6162 6225 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
6163 6226 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
6164 6227 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
6165 6228 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
6166 6229 2.077687 TATTGTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
6167 6230 4.476628 TTTTATTGTACTCCCTCCGTCC 57.523 45.455 0.00 0.00 0.00 4.79
6168 6231 4.272748 GCATTTTATTGTACTCCCTCCGTC 59.727 45.833 0.00 0.00 0.00 4.79
6169 6232 4.196971 GCATTTTATTGTACTCCCTCCGT 58.803 43.478 0.00 0.00 0.00 4.69
6170 6233 3.564225 GGCATTTTATTGTACTCCCTCCG 59.436 47.826 0.00 0.00 0.00 4.63
6171 6234 3.889538 GGGCATTTTATTGTACTCCCTCC 59.110 47.826 0.00 0.00 0.00 4.30
6172 6235 3.564225 CGGGCATTTTATTGTACTCCCTC 59.436 47.826 0.00 0.00 0.00 4.30
6173 6236 3.053917 ACGGGCATTTTATTGTACTCCCT 60.054 43.478 0.00 0.00 0.00 4.20
6174 6237 3.284617 ACGGGCATTTTATTGTACTCCC 58.715 45.455 0.00 0.00 0.00 4.30
6175 6238 4.976224 AACGGGCATTTTATTGTACTCC 57.024 40.909 0.00 0.00 0.00 3.85
6176 6239 5.912955 GCATAACGGGCATTTTATTGTACTC 59.087 40.000 0.00 0.00 0.00 2.59
6177 6240 5.592688 AGCATAACGGGCATTTTATTGTACT 59.407 36.000 0.00 0.00 0.00 2.73
6178 6241 5.685511 CAGCATAACGGGCATTTTATTGTAC 59.314 40.000 0.00 0.00 0.00 2.90
6179 6242 5.590663 TCAGCATAACGGGCATTTTATTGTA 59.409 36.000 0.00 0.00 0.00 2.41
6180 6243 4.400884 TCAGCATAACGGGCATTTTATTGT 59.599 37.500 0.00 0.00 0.00 2.71
6181 6244 4.930963 TCAGCATAACGGGCATTTTATTG 58.069 39.130 0.00 0.00 0.00 1.90
6182 6245 5.789643 ATCAGCATAACGGGCATTTTATT 57.210 34.783 0.00 0.00 0.00 1.40
6183 6246 5.562696 CGAATCAGCATAACGGGCATTTTAT 60.563 40.000 0.00 0.00 0.00 1.40
6184 6247 4.260990 CGAATCAGCATAACGGGCATTTTA 60.261 41.667 0.00 0.00 0.00 1.52
6185 6248 3.489059 CGAATCAGCATAACGGGCATTTT 60.489 43.478 0.00 0.00 0.00 1.82
6186 6249 2.033299 CGAATCAGCATAACGGGCATTT 59.967 45.455 0.00 0.00 0.00 2.32
6220 6283 6.542370 ACACAGCACAACTAGACTTTTTACAT 59.458 34.615 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.