Multiple sequence alignment - TraesCS7B01G141900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G141900 chr7B 100.000 5038 0 0 1 5038 180033259 180028222 0.000000e+00 9304.0
1 TraesCS7B01G141900 chr7B 89.507 953 60 20 4089 5027 599828208 599829134 0.000000e+00 1170.0
2 TraesCS7B01G141900 chr7B 87.873 973 54 33 4085 5038 693172981 693173908 0.000000e+00 1085.0
3 TraesCS7B01G141900 chr7B 89.344 122 13 0 209 330 679795732 679795611 2.430000e-33 154.0
4 TraesCS7B01G141900 chr7B 86.667 120 16 0 214 333 501600551 501600432 3.160000e-27 134.0
5 TraesCS7B01G141900 chr7D 93.287 2443 97 25 525 2934 219711376 219713784 0.000000e+00 3541.0
6 TraesCS7B01G141900 chr7D 93.346 1082 44 11 3016 4086 219713782 219714846 0.000000e+00 1574.0
7 TraesCS7B01G141900 chr7D 94.925 729 21 6 3231 3959 234345536 234346248 0.000000e+00 1127.0
8 TraesCS7B01G141900 chr7D 89.431 123 13 0 213 335 93126728 93126850 6.750000e-34 156.0
9 TraesCS7B01G141900 chr7D 87.826 115 14 0 214 328 430095846 430095732 8.800000e-28 135.0
10 TraesCS7B01G141900 chr7D 86.555 119 16 0 212 330 478365034 478364916 1.140000e-26 132.0
11 TraesCS7B01G141900 chr7D 86.607 112 7 4 1 105 219711121 219711231 3.190000e-22 117.0
12 TraesCS7B01G141900 chr7D 91.429 70 4 2 2947 3015 509201722 509201654 1.490000e-15 95.3
13 TraesCS7B01G141900 chr7D 83.333 84 10 4 3648 3729 176160835 176160916 1.950000e-09 75.0
14 TraesCS7B01G141900 chr7A 91.400 2186 100 31 525 2683 232280103 232282227 0.000000e+00 2915.0
15 TraesCS7B01G141900 chr7A 96.142 1011 35 2 3058 4064 232282758 232283768 0.000000e+00 1648.0
16 TraesCS7B01G141900 chr7A 87.603 968 69 26 4087 5038 15522908 15521976 0.000000e+00 1075.0
17 TraesCS7B01G141900 chr7A 91.111 90 8 0 440 529 232279884 232279973 6.850000e-24 122.0
18 TraesCS7B01G141900 chr7A 90.244 82 6 2 2740 2819 232282640 232282721 6.900000e-19 106.0
19 TraesCS7B01G141900 chr7A 92.857 70 3 2 2947 3015 611964772 611964840 3.210000e-17 100.0
20 TraesCS7B01G141900 chr7A 91.549 71 4 2 2947 3016 34031277 34031208 4.150000e-16 97.1
21 TraesCS7B01G141900 chr3B 98.119 957 18 0 4082 5038 754457872 754458828 0.000000e+00 1668.0
22 TraesCS7B01G141900 chr3B 90.200 1000 41 17 4069 5037 39617814 39618787 0.000000e+00 1251.0
23 TraesCS7B01G141900 chr3B 89.109 101 11 0 4085 4185 60565491 60565591 5.290000e-25 126.0
24 TraesCS7B01G141900 chr3B 88.462 104 8 3 112 212 659449146 659449248 6.850000e-24 122.0
25 TraesCS7B01G141900 chrUn 94.845 970 34 9 4082 5038 76238097 76239063 0.000000e+00 1500.0
26 TraesCS7B01G141900 chrUn 97.902 286 6 0 3231 3516 478826410 478826695 3.500000e-136 496.0
27 TraesCS7B01G141900 chr2B 94.283 962 39 10 4085 5036 512427416 512426461 0.000000e+00 1458.0
28 TraesCS7B01G141900 chr2B 90.353 964 53 19 4086 5036 19850849 19851785 0.000000e+00 1229.0
29 TraesCS7B01G141900 chr2B 89.178 961 63 19 4082 5027 670325974 670326908 0.000000e+00 1160.0
30 TraesCS7B01G141900 chr2B 85.788 971 56 26 4087 5038 658225712 658224805 0.000000e+00 953.0
31 TraesCS7B01G141900 chr2B 88.839 672 50 15 4085 4736 655695376 655694710 0.000000e+00 802.0
32 TraesCS7B01G141900 chr6A 90.259 965 54 20 4087 5038 602798952 602798015 0.000000e+00 1225.0
33 TraesCS7B01G141900 chr6A 78.462 260 36 11 2080 2338 504892998 504892758 8.740000e-33 152.0
34 TraesCS7B01G141900 chr6B 89.392 971 61 17 4086 5038 319456192 319457138 0.000000e+00 1184.0
35 TraesCS7B01G141900 chr6B 77.692 260 38 11 2080 2338 548628978 548628738 1.890000e-29 141.0
36 TraesCS7B01G141900 chr3D 94.925 729 21 6 3231 3959 456654910 456655622 0.000000e+00 1127.0
37 TraesCS7B01G141900 chr3D 88.372 86 6 4 2931 3015 260996517 260996599 3.210000e-17 100.0
38 TraesCS7B01G141900 chr4A 93.236 754 28 9 4286 5038 713793417 713792686 0.000000e+00 1088.0
39 TraesCS7B01G141900 chr4A 87.619 105 11 2 116 218 64143102 64142998 2.460000e-23 121.0
40 TraesCS7B01G141900 chr4A 91.139 79 5 2 2947 3024 511823525 511823448 6.900000e-19 106.0
41 TraesCS7B01G141900 chr4B 87.551 972 59 28 4087 5038 608663366 608662437 0.000000e+00 1068.0
42 TraesCS7B01G141900 chr4B 89.185 675 47 18 4082 4736 15515453 15516121 0.000000e+00 819.0
43 TraesCS7B01G141900 chr4B 85.000 120 18 0 211 330 340642314 340642433 6.850000e-24 122.0
44 TraesCS7B01G141900 chr2A 83.309 677 77 21 4085 4736 15751732 15751067 4.340000e-165 592.0
45 TraesCS7B01G141900 chr2A 85.366 123 15 3 210 330 762756422 762756543 1.900000e-24 124.0
46 TraesCS7B01G141900 chr2A 86.047 86 9 3 2931 3015 553486206 553486123 6.950000e-14 89.8
47 TraesCS7B01G141900 chr5D 75.338 592 96 39 1337 1894 370118338 370118913 6.520000e-59 239.0
48 TraesCS7B01G141900 chr5D 86.555 119 16 0 214 332 450203170 450203288 1.140000e-26 132.0
49 TraesCS7B01G141900 chr5D 88.506 87 5 5 2931 3015 494223386 494223469 3.210000e-17 100.0
50 TraesCS7B01G141900 chr6D 78.077 260 37 11 2080 2338 363872994 363872754 4.060000e-31 147.0
51 TraesCS7B01G141900 chr6D 92.857 70 3 2 2947 3015 326566995 326567063 3.210000e-17 100.0
52 TraesCS7B01G141900 chr5B 90.909 99 7 2 116 212 136138023 136138121 1.140000e-26 132.0
53 TraesCS7B01G141900 chr1B 85.593 118 17 0 214 331 325262212 325262095 1.900000e-24 124.0
54 TraesCS7B01G141900 chr3A 86.735 98 12 1 116 212 34055388 34055291 1.920000e-19 108.0
55 TraesCS7B01G141900 chr3A 87.273 55 7 0 345 399 73508436 73508382 4.210000e-06 63.9
56 TraesCS7B01G141900 chr1D 91.045 67 4 2 2947 3012 143951129 143951194 6.950000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G141900 chr7B 180028222 180033259 5037 True 9304.00 9304 100.00000 1 5038 1 chr7B.!!$R1 5037
1 TraesCS7B01G141900 chr7B 599828208 599829134 926 False 1170.00 1170 89.50700 4089 5027 1 chr7B.!!$F1 938
2 TraesCS7B01G141900 chr7B 693172981 693173908 927 False 1085.00 1085 87.87300 4085 5038 1 chr7B.!!$F2 953
3 TraesCS7B01G141900 chr7D 219711121 219714846 3725 False 1744.00 3541 91.08000 1 4086 3 chr7D.!!$F4 4085
4 TraesCS7B01G141900 chr7D 234345536 234346248 712 False 1127.00 1127 94.92500 3231 3959 1 chr7D.!!$F3 728
5 TraesCS7B01G141900 chr7A 232279884 232283768 3884 False 1197.75 2915 92.22425 440 4064 4 chr7A.!!$F2 3624
6 TraesCS7B01G141900 chr7A 15521976 15522908 932 True 1075.00 1075 87.60300 4087 5038 1 chr7A.!!$R1 951
7 TraesCS7B01G141900 chr3B 754457872 754458828 956 False 1668.00 1668 98.11900 4082 5038 1 chr3B.!!$F4 956
8 TraesCS7B01G141900 chr3B 39617814 39618787 973 False 1251.00 1251 90.20000 4069 5037 1 chr3B.!!$F1 968
9 TraesCS7B01G141900 chrUn 76238097 76239063 966 False 1500.00 1500 94.84500 4082 5038 1 chrUn.!!$F1 956
10 TraesCS7B01G141900 chr2B 512426461 512427416 955 True 1458.00 1458 94.28300 4085 5036 1 chr2B.!!$R1 951
11 TraesCS7B01G141900 chr2B 19850849 19851785 936 False 1229.00 1229 90.35300 4086 5036 1 chr2B.!!$F1 950
12 TraesCS7B01G141900 chr2B 670325974 670326908 934 False 1160.00 1160 89.17800 4082 5027 1 chr2B.!!$F2 945
13 TraesCS7B01G141900 chr2B 658224805 658225712 907 True 953.00 953 85.78800 4087 5038 1 chr2B.!!$R3 951
14 TraesCS7B01G141900 chr2B 655694710 655695376 666 True 802.00 802 88.83900 4085 4736 1 chr2B.!!$R2 651
15 TraesCS7B01G141900 chr6A 602798015 602798952 937 True 1225.00 1225 90.25900 4087 5038 1 chr6A.!!$R2 951
16 TraesCS7B01G141900 chr6B 319456192 319457138 946 False 1184.00 1184 89.39200 4086 5038 1 chr6B.!!$F1 952
17 TraesCS7B01G141900 chr3D 456654910 456655622 712 False 1127.00 1127 94.92500 3231 3959 1 chr3D.!!$F2 728
18 TraesCS7B01G141900 chr4A 713792686 713793417 731 True 1088.00 1088 93.23600 4286 5038 1 chr4A.!!$R3 752
19 TraesCS7B01G141900 chr4B 608662437 608663366 929 True 1068.00 1068 87.55100 4087 5038 1 chr4B.!!$R1 951
20 TraesCS7B01G141900 chr4B 15515453 15516121 668 False 819.00 819 89.18500 4082 4736 1 chr4B.!!$F1 654
21 TraesCS7B01G141900 chr2A 15751067 15751732 665 True 592.00 592 83.30900 4085 4736 1 chr2A.!!$R1 651
22 TraesCS7B01G141900 chr5D 370118338 370118913 575 False 239.00 239 75.33800 1337 1894 1 chr5D.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 170 0.040204 AACTGCAATAAGCTGCCCCT 59.960 50.000 0.00 0.0 45.14 4.79 F
1026 1181 0.038892 TGCGTTTCCTCGTACTGTCC 60.039 55.000 0.00 0.0 0.00 4.02 F
1036 1194 0.392729 CGTACTGTCCCTCCTCGTCT 60.393 60.000 0.00 0.0 0.00 4.18 F
1920 2114 0.675633 CCAACAACAAGGCCCTCAAG 59.324 55.000 0.00 0.0 0.00 3.02 F
1990 2184 1.222387 GCCGCATTGGGGTACTACA 59.778 57.895 19.74 0.0 37.97 2.74 F
3260 3845 1.071987 CCAGCACCTGTTCAGCTCA 59.928 57.895 0.00 0.0 36.26 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2093 0.032540 GCTTGAGGGCCTTGTTGTTG 59.967 55.000 7.89 0.00 0.00 3.33 R
2179 2373 2.279918 GTTGCTGTGGTCGTCGGT 60.280 61.111 0.00 0.00 0.00 4.69 R
2232 2426 2.730672 CGCCCGCGAGAACTTCTTG 61.731 63.158 8.23 1.93 42.83 3.02 R
3161 3746 2.124983 CCTGCACCGTCCATCCAG 60.125 66.667 0.00 0.00 0.00 3.86 R
3311 3896 4.778143 GCCACGCCCTGGACGATT 62.778 66.667 10.02 0.00 43.95 3.34 R
4193 4823 1.375396 CTCGATGGTTGGTTGCGGA 60.375 57.895 0.00 0.00 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.379339 GCACCACAGTCCAAAGTTAAAA 57.621 40.909 0.00 0.00 0.00 1.52
78 86 1.670083 GAACGCACGGCCCTAAACT 60.670 57.895 0.00 0.00 0.00 2.66
84 92 0.321653 CACGGCCCTAAACTGAAGCT 60.322 55.000 0.00 0.00 0.00 3.74
105 113 4.735338 GCTTTGCTTCTTGTCTTGTTGTAC 59.265 41.667 0.00 0.00 0.00 2.90
106 114 5.449177 GCTTTGCTTCTTGTCTTGTTGTACT 60.449 40.000 0.00 0.00 0.00 2.73
108 116 6.844696 TTGCTTCTTGTCTTGTTGTACTAG 57.155 37.500 0.00 0.00 0.00 2.57
109 117 5.914033 TGCTTCTTGTCTTGTTGTACTAGT 58.086 37.500 0.00 0.00 0.00 2.57
110 118 7.046292 TGCTTCTTGTCTTGTTGTACTAGTA 57.954 36.000 0.00 0.00 0.00 1.82
111 119 7.667557 TGCTTCTTGTCTTGTTGTACTAGTAT 58.332 34.615 5.75 0.00 0.00 2.12
112 120 8.799367 TGCTTCTTGTCTTGTTGTACTAGTATA 58.201 33.333 5.75 0.00 0.00 1.47
113 121 9.635520 GCTTCTTGTCTTGTTGTACTAGTATAA 57.364 33.333 5.75 6.94 0.00 0.98
117 125 8.767478 TTGTCTTGTTGTACTAGTATAAAGGC 57.233 34.615 13.02 10.27 0.00 4.35
118 126 7.325694 TGTCTTGTTGTACTAGTATAAAGGCC 58.674 38.462 13.02 0.00 0.00 5.19
119 127 7.038870 TGTCTTGTTGTACTAGTATAAAGGCCA 60.039 37.037 13.02 5.25 0.00 5.36
120 128 7.491696 GTCTTGTTGTACTAGTATAAAGGCCAG 59.508 40.741 13.02 4.14 0.00 4.85
121 129 6.862469 TGTTGTACTAGTATAAAGGCCAGT 57.138 37.500 13.02 0.00 0.00 4.00
122 130 7.248743 TGTTGTACTAGTATAAAGGCCAGTT 57.751 36.000 13.02 0.17 0.00 3.16
123 131 7.682628 TGTTGTACTAGTATAAAGGCCAGTTT 58.317 34.615 13.02 0.00 0.00 2.66
124 132 8.158789 TGTTGTACTAGTATAAAGGCCAGTTTT 58.841 33.333 13.02 0.00 0.00 2.43
125 133 9.006839 GTTGTACTAGTATAAAGGCCAGTTTTT 57.993 33.333 13.02 0.00 0.00 1.94
148 156 5.880054 TTGTGGCTTCTAGAATAAACTGC 57.120 39.130 5.44 4.64 0.00 4.40
149 157 4.905429 TGTGGCTTCTAGAATAAACTGCA 58.095 39.130 5.44 0.00 0.00 4.41
150 158 5.312895 TGTGGCTTCTAGAATAAACTGCAA 58.687 37.500 5.44 0.00 0.00 4.08
151 159 5.945784 TGTGGCTTCTAGAATAAACTGCAAT 59.054 36.000 5.44 0.00 0.00 3.56
152 160 7.109501 TGTGGCTTCTAGAATAAACTGCAATA 58.890 34.615 5.44 0.00 0.00 1.90
153 161 7.609918 TGTGGCTTCTAGAATAAACTGCAATAA 59.390 33.333 5.44 0.00 0.00 1.40
154 162 8.125448 GTGGCTTCTAGAATAAACTGCAATAAG 58.875 37.037 5.44 0.00 0.00 1.73
155 163 7.135467 GGCTTCTAGAATAAACTGCAATAAGC 58.865 38.462 5.44 0.15 45.96 3.09
156 164 7.012799 GGCTTCTAGAATAAACTGCAATAAGCT 59.987 37.037 5.44 0.00 45.94 3.74
157 165 7.854916 GCTTCTAGAATAAACTGCAATAAGCTG 59.145 37.037 5.44 0.00 45.94 4.24
158 166 7.251704 TCTAGAATAAACTGCAATAAGCTGC 57.748 36.000 0.00 0.00 45.14 5.25
159 167 5.254339 AGAATAAACTGCAATAAGCTGCC 57.746 39.130 0.00 0.00 45.14 4.85
160 168 4.098501 AGAATAAACTGCAATAAGCTGCCC 59.901 41.667 0.00 0.00 45.14 5.36
161 169 0.897621 AAACTGCAATAAGCTGCCCC 59.102 50.000 0.00 0.00 45.14 5.80
162 170 0.040204 AACTGCAATAAGCTGCCCCT 59.960 50.000 0.00 0.00 45.14 4.79
163 171 0.040204 ACTGCAATAAGCTGCCCCTT 59.960 50.000 0.00 0.00 45.14 3.95
164 172 1.284785 ACTGCAATAAGCTGCCCCTTA 59.715 47.619 0.00 0.00 45.14 2.69
165 173 1.678101 CTGCAATAAGCTGCCCCTTAC 59.322 52.381 0.00 0.00 45.94 2.34
166 174 1.032794 GCAATAAGCTGCCCCTTACC 58.967 55.000 0.00 0.00 41.15 2.85
167 175 1.410224 GCAATAAGCTGCCCCTTACCT 60.410 52.381 0.00 0.00 41.15 3.08
168 176 2.158667 GCAATAAGCTGCCCCTTACCTA 60.159 50.000 0.00 0.00 41.15 3.08
169 177 3.744660 CAATAAGCTGCCCCTTACCTAG 58.255 50.000 0.00 0.00 30.69 3.02
170 178 1.129058 TAAGCTGCCCCTTACCTAGC 58.871 55.000 0.00 0.00 34.71 3.42
171 179 0.621862 AAGCTGCCCCTTACCTAGCT 60.622 55.000 0.00 0.00 45.87 3.32
172 180 0.621862 AGCTGCCCCTTACCTAGCTT 60.622 55.000 0.00 0.00 41.60 3.74
173 181 1.129058 GCTGCCCCTTACCTAGCTTA 58.871 55.000 0.00 0.00 0.00 3.09
174 182 1.700186 GCTGCCCCTTACCTAGCTTAT 59.300 52.381 0.00 0.00 0.00 1.73
175 183 2.106684 GCTGCCCCTTACCTAGCTTATT 59.893 50.000 0.00 0.00 0.00 1.40
176 184 3.807561 GCTGCCCCTTACCTAGCTTATTC 60.808 52.174 0.00 0.00 0.00 1.75
177 185 3.648545 CTGCCCCTTACCTAGCTTATTCT 59.351 47.826 0.00 0.00 0.00 2.40
178 186 4.823107 TGCCCCTTACCTAGCTTATTCTA 58.177 43.478 0.00 0.00 0.00 2.10
179 187 5.221303 TGCCCCTTACCTAGCTTATTCTAA 58.779 41.667 0.00 0.00 0.00 2.10
180 188 5.668535 TGCCCCTTACCTAGCTTATTCTAAA 59.331 40.000 0.00 0.00 0.00 1.85
181 189 6.159046 TGCCCCTTACCTAGCTTATTCTAAAA 59.841 38.462 0.00 0.00 0.00 1.52
182 190 6.711194 GCCCCTTACCTAGCTTATTCTAAAAG 59.289 42.308 0.00 0.00 0.00 2.27
183 191 7.637523 GCCCCTTACCTAGCTTATTCTAAAAGT 60.638 40.741 0.00 0.00 0.00 2.66
184 192 7.932491 CCCCTTACCTAGCTTATTCTAAAAGTC 59.068 40.741 0.00 0.00 0.00 3.01
185 193 8.483758 CCCTTACCTAGCTTATTCTAAAAGTCA 58.516 37.037 0.00 0.00 0.00 3.41
186 194 9.886132 CCTTACCTAGCTTATTCTAAAAGTCAA 57.114 33.333 0.00 0.00 0.00 3.18
223 231 5.786264 TTAGAAGCCTATTACTTCCTCCG 57.214 43.478 0.00 0.00 43.75 4.63
224 232 3.644335 AGAAGCCTATTACTTCCTCCGT 58.356 45.455 0.00 0.00 43.75 4.69
225 233 4.031611 AGAAGCCTATTACTTCCTCCGTT 58.968 43.478 0.00 0.00 43.75 4.44
226 234 4.099727 AGAAGCCTATTACTTCCTCCGTTC 59.900 45.833 0.00 0.00 43.75 3.95
227 235 2.361438 AGCCTATTACTTCCTCCGTTCG 59.639 50.000 0.00 0.00 0.00 3.95
228 236 2.545322 GCCTATTACTTCCTCCGTTCGG 60.545 54.545 4.74 4.74 0.00 4.30
229 237 2.954318 CCTATTACTTCCTCCGTTCGGA 59.046 50.000 13.34 13.34 0.00 4.55
230 238 3.382546 CCTATTACTTCCTCCGTTCGGAA 59.617 47.826 14.79 0.00 38.18 4.30
231 239 4.038883 CCTATTACTTCCTCCGTTCGGAAT 59.961 45.833 14.79 6.50 39.64 3.01
232 240 3.967332 TTACTTCCTCCGTTCGGAATT 57.033 42.857 14.79 0.00 39.64 2.17
233 241 5.603170 ATTACTTCCTCCGTTCGGAATTA 57.397 39.130 14.79 1.22 39.64 1.40
234 242 3.242549 ACTTCCTCCGTTCGGAATTAC 57.757 47.619 14.79 0.00 39.64 1.89
235 243 2.830321 ACTTCCTCCGTTCGGAATTACT 59.170 45.455 14.79 0.00 39.64 2.24
236 244 3.260128 ACTTCCTCCGTTCGGAATTACTT 59.740 43.478 14.79 0.00 39.64 2.24
237 245 3.241067 TCCTCCGTTCGGAATTACTTG 57.759 47.619 14.79 1.97 33.41 3.16
238 246 2.564062 TCCTCCGTTCGGAATTACTTGT 59.436 45.455 14.79 0.00 33.41 3.16
239 247 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
240 248 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
241 249 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
242 250 2.343544 CCGTTCGGAATTACTTGTCGTC 59.656 50.000 5.19 0.00 0.00 4.20
243 251 2.026038 CGTTCGGAATTACTTGTCGTCG 59.974 50.000 0.00 0.00 0.00 5.12
244 252 3.236816 GTTCGGAATTACTTGTCGTCGA 58.763 45.455 0.00 0.00 0.00 4.20
245 253 3.557577 TCGGAATTACTTGTCGTCGAA 57.442 42.857 0.00 0.00 0.00 3.71
246 254 3.899734 TCGGAATTACTTGTCGTCGAAA 58.100 40.909 0.00 0.00 0.00 3.46
247 255 4.487948 TCGGAATTACTTGTCGTCGAAAT 58.512 39.130 0.00 0.00 0.00 2.17
248 256 4.925054 TCGGAATTACTTGTCGTCGAAATT 59.075 37.500 0.00 0.00 0.00 1.82
249 257 5.013236 CGGAATTACTTGTCGTCGAAATTG 58.987 41.667 6.57 0.00 0.00 2.32
250 258 5.164031 CGGAATTACTTGTCGTCGAAATTGA 60.164 40.000 6.57 0.00 0.00 2.57
251 259 6.455113 CGGAATTACTTGTCGTCGAAATTGAT 60.455 38.462 6.57 0.00 0.00 2.57
252 260 7.253850 CGGAATTACTTGTCGTCGAAATTGATA 60.254 37.037 6.57 0.00 0.00 2.15
253 261 8.385111 GGAATTACTTGTCGTCGAAATTGATAA 58.615 33.333 6.57 0.00 0.00 1.75
254 262 9.749490 GAATTACTTGTCGTCGAAATTGATAAA 57.251 29.630 6.57 0.00 0.00 1.40
258 266 8.434870 ACTTGTCGTCGAAATTGATAAAAATG 57.565 30.769 0.00 0.00 0.00 2.32
259 267 7.537306 ACTTGTCGTCGAAATTGATAAAAATGG 59.463 33.333 0.00 0.00 0.00 3.16
260 268 7.135089 TGTCGTCGAAATTGATAAAAATGGA 57.865 32.000 0.00 0.00 0.00 3.41
261 269 7.757526 TGTCGTCGAAATTGATAAAAATGGAT 58.242 30.769 0.00 0.00 0.00 3.41
262 270 8.884726 TGTCGTCGAAATTGATAAAAATGGATA 58.115 29.630 0.00 0.00 0.00 2.59
263 271 9.878599 GTCGTCGAAATTGATAAAAATGGATAT 57.121 29.630 0.00 0.00 0.00 1.63
307 315 9.685276 ATCTACATACATCCATTTCTTTGACAA 57.315 29.630 0.00 0.00 0.00 3.18
308 316 9.166173 TCTACATACATCCATTTCTTTGACAAG 57.834 33.333 0.00 0.00 0.00 3.16
309 317 7.765695 ACATACATCCATTTCTTTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
310 318 8.862325 ACATACATCCATTTCTTTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
311 319 9.466497 ACATACATCCATTTCTTTGACAAGTAT 57.534 29.630 0.00 0.00 0.00 2.12
315 323 9.696917 ACATCCATTTCTTTGACAAGTATTTTC 57.303 29.630 0.00 0.00 0.00 2.29
316 324 9.695526 CATCCATTTCTTTGACAAGTATTTTCA 57.304 29.630 0.00 0.00 0.00 2.69
317 325 9.918630 ATCCATTTCTTTGACAAGTATTTTCAG 57.081 29.630 0.00 0.00 0.00 3.02
318 326 9.130661 TCCATTTCTTTGACAAGTATTTTCAGA 57.869 29.630 0.00 0.00 0.00 3.27
319 327 9.185192 CCATTTCTTTGACAAGTATTTTCAGAC 57.815 33.333 0.00 0.00 0.00 3.51
320 328 9.185192 CATTTCTTTGACAAGTATTTTCAGACC 57.815 33.333 0.00 0.00 0.00 3.85
321 329 6.539649 TCTTTGACAAGTATTTTCAGACCG 57.460 37.500 0.00 0.00 0.00 4.79
322 330 6.285224 TCTTTGACAAGTATTTTCAGACCGA 58.715 36.000 0.00 0.00 0.00 4.69
323 331 6.423905 TCTTTGACAAGTATTTTCAGACCGAG 59.576 38.462 0.00 0.00 0.00 4.63
324 332 4.566004 TGACAAGTATTTTCAGACCGAGG 58.434 43.478 0.00 0.00 0.00 4.63
325 333 4.282449 TGACAAGTATTTTCAGACCGAGGA 59.718 41.667 0.00 0.00 0.00 3.71
326 334 5.221561 TGACAAGTATTTTCAGACCGAGGAA 60.222 40.000 0.00 0.00 0.00 3.36
327 335 5.238583 ACAAGTATTTTCAGACCGAGGAAG 58.761 41.667 0.00 0.00 0.00 3.46
328 336 5.221661 ACAAGTATTTTCAGACCGAGGAAGT 60.222 40.000 0.00 0.00 0.00 3.01
329 337 6.014840 ACAAGTATTTTCAGACCGAGGAAGTA 60.015 38.462 0.00 0.00 0.00 2.24
330 338 6.210287 AGTATTTTCAGACCGAGGAAGTAG 57.790 41.667 0.00 0.00 0.00 2.57
331 339 5.715753 AGTATTTTCAGACCGAGGAAGTAGT 59.284 40.000 0.00 0.00 0.00 2.73
332 340 4.950205 TTTTCAGACCGAGGAAGTAGTT 57.050 40.909 0.00 0.00 0.00 2.24
333 341 6.600882 ATTTTCAGACCGAGGAAGTAGTTA 57.399 37.500 0.00 0.00 0.00 2.24
334 342 6.409524 TTTTCAGACCGAGGAAGTAGTTAA 57.590 37.500 0.00 0.00 0.00 2.01
335 343 5.640189 TTCAGACCGAGGAAGTAGTTAAG 57.360 43.478 0.00 0.00 0.00 1.85
336 344 4.914983 TCAGACCGAGGAAGTAGTTAAGA 58.085 43.478 0.00 0.00 0.00 2.10
337 345 4.699257 TCAGACCGAGGAAGTAGTTAAGAC 59.301 45.833 0.00 0.00 0.00 3.01
338 346 4.701171 CAGACCGAGGAAGTAGTTAAGACT 59.299 45.833 0.00 0.00 39.97 3.24
339 347 5.183522 CAGACCGAGGAAGTAGTTAAGACTT 59.816 44.000 0.00 2.95 39.85 3.01
340 348 5.183522 AGACCGAGGAAGTAGTTAAGACTTG 59.816 44.000 7.30 0.00 37.27 3.16
341 349 5.075493 ACCGAGGAAGTAGTTAAGACTTGA 58.925 41.667 7.30 0.00 37.27 3.02
342 350 5.715753 ACCGAGGAAGTAGTTAAGACTTGAT 59.284 40.000 7.30 0.00 37.27 2.57
343 351 6.127675 ACCGAGGAAGTAGTTAAGACTTGATC 60.128 42.308 7.30 4.98 37.27 2.92
344 352 6.095720 CCGAGGAAGTAGTTAAGACTTGATCT 59.904 42.308 7.30 3.46 37.27 2.75
346 354 7.698970 CGAGGAAGTAGTTAAGACTTGATCTTC 59.301 40.741 7.30 6.10 44.99 2.87
347 355 8.658840 AGGAAGTAGTTAAGACTTGATCTTCT 57.341 34.615 7.30 0.00 44.99 2.85
348 356 9.756571 AGGAAGTAGTTAAGACTTGATCTTCTA 57.243 33.333 7.30 0.00 44.99 2.10
391 399 8.861086 TGTGCTTCTAGAATAAACTAGATAGGG 58.139 37.037 5.44 0.00 45.15 3.53
392 400 8.308207 GTGCTTCTAGAATAAACTAGATAGGGG 58.692 40.741 5.44 0.00 45.15 4.79
393 401 8.232412 TGCTTCTAGAATAAACTAGATAGGGGA 58.768 37.037 5.44 0.00 45.15 4.81
394 402 8.525316 GCTTCTAGAATAAACTAGATAGGGGAC 58.475 40.741 5.44 0.00 45.15 4.46
395 403 9.589461 CTTCTAGAATAAACTAGATAGGGGACA 57.411 37.037 5.44 0.00 45.15 4.02
396 404 9.589461 TTCTAGAATAAACTAGATAGGGGACAG 57.411 37.037 0.00 0.00 45.15 3.51
397 405 6.673839 AGAATAAACTAGATAGGGGACAGC 57.326 41.667 0.00 0.00 0.00 4.40
398 406 6.386284 AGAATAAACTAGATAGGGGACAGCT 58.614 40.000 0.00 0.00 0.00 4.24
399 407 6.847036 AGAATAAACTAGATAGGGGACAGCTT 59.153 38.462 0.00 0.00 0.00 3.74
400 408 8.011290 AGAATAAACTAGATAGGGGACAGCTTA 58.989 37.037 0.00 0.00 0.00 3.09
401 409 8.743636 AATAAACTAGATAGGGGACAGCTTAT 57.256 34.615 0.00 0.00 0.00 1.73
402 410 8.743636 ATAAACTAGATAGGGGACAGCTTATT 57.256 34.615 0.00 0.00 0.00 1.40
403 411 7.453141 AAACTAGATAGGGGACAGCTTATTT 57.547 36.000 0.00 0.00 0.00 1.40
404 412 7.453141 AACTAGATAGGGGACAGCTTATTTT 57.547 36.000 0.00 0.00 0.00 1.82
405 413 6.831976 ACTAGATAGGGGACAGCTTATTTTG 58.168 40.000 0.00 0.00 0.00 2.44
406 414 5.053978 AGATAGGGGACAGCTTATTTTGG 57.946 43.478 0.00 0.00 0.00 3.28
407 415 4.726825 AGATAGGGGACAGCTTATTTTGGA 59.273 41.667 0.00 0.00 0.00 3.53
408 416 3.825908 AGGGGACAGCTTATTTTGGAA 57.174 42.857 0.00 0.00 0.00 3.53
409 417 3.701664 AGGGGACAGCTTATTTTGGAAG 58.298 45.455 0.00 0.00 0.00 3.46
410 418 2.760650 GGGGACAGCTTATTTTGGAAGG 59.239 50.000 0.00 0.00 0.00 3.46
411 419 3.431415 GGGACAGCTTATTTTGGAAGGT 58.569 45.455 0.00 0.00 35.05 3.50
412 420 3.444034 GGGACAGCTTATTTTGGAAGGTC 59.556 47.826 0.00 0.00 32.44 3.85
413 421 4.079253 GGACAGCTTATTTTGGAAGGTCA 58.921 43.478 0.00 0.00 32.44 4.02
414 422 4.522789 GGACAGCTTATTTTGGAAGGTCAA 59.477 41.667 0.00 0.00 32.44 3.18
415 423 5.010617 GGACAGCTTATTTTGGAAGGTCAAA 59.989 40.000 0.00 0.00 32.44 2.69
416 424 6.462347 GGACAGCTTATTTTGGAAGGTCAAAA 60.462 38.462 5.42 5.42 46.42 2.44
417 425 6.883744 ACAGCTTATTTTGGAAGGTCAAAAA 58.116 32.000 6.81 0.00 45.79 1.94
437 445 4.456280 AAAGCCAGCAAAATAACTAGCC 57.544 40.909 0.00 0.00 0.00 3.93
438 446 2.379005 AGCCAGCAAAATAACTAGCCC 58.621 47.619 0.00 0.00 0.00 5.19
443 451 3.938963 CAGCAAAATAACTAGCCCTTCGA 59.061 43.478 0.00 0.00 0.00 3.71
460 468 0.459237 CGACCGAGCTGAGCTTTGAT 60.459 55.000 9.00 0.00 39.88 2.57
469 477 2.095053 GCTGAGCTTTGATCCGAAGTTC 59.905 50.000 12.75 12.75 36.21 3.01
476 484 2.203800 TGATCCGAAGTTCCGAATCG 57.796 50.000 0.00 0.00 36.39 3.34
603 656 5.050159 CCAAAACAGGCAAGAAATAGCAAAC 60.050 40.000 0.00 0.00 0.00 2.93
626 765 3.386078 ACATCATTGCTATCACTCCGTCT 59.614 43.478 0.00 0.00 0.00 4.18
633 772 2.030363 GCTATCACTCCGTCTGATGAGG 60.030 54.545 10.62 2.31 32.80 3.86
650 789 2.025226 TGAGGTCTCCACTCCGATTACT 60.025 50.000 0.00 0.00 34.06 2.24
651 790 3.201487 TGAGGTCTCCACTCCGATTACTA 59.799 47.826 0.00 0.00 34.06 1.82
652 791 3.816523 GAGGTCTCCACTCCGATTACTAG 59.183 52.174 0.00 0.00 0.00 2.57
677 816 6.229561 ACAAACTTCTCAGAAAGATTACGC 57.770 37.500 0.00 0.00 32.82 4.42
689 828 0.247537 GATTACGCAAAAGCGACCCG 60.248 55.000 17.27 0.00 36.94 5.28
770 915 1.818221 GCGACACCTGTGTGAACGTC 61.818 60.000 7.81 0.00 45.76 4.34
807 952 1.019805 GCGAGAGAACCCTTTTCCCG 61.020 60.000 0.00 0.00 0.00 5.14
836 981 2.218603 TGTGACTTTCGCCTTTCTTCC 58.781 47.619 0.00 0.00 0.00 3.46
837 982 2.218603 GTGACTTTCGCCTTTCTTCCA 58.781 47.619 0.00 0.00 0.00 3.53
838 983 2.814336 GTGACTTTCGCCTTTCTTCCAT 59.186 45.455 0.00 0.00 0.00 3.41
839 984 3.253432 GTGACTTTCGCCTTTCTTCCATT 59.747 43.478 0.00 0.00 0.00 3.16
1023 1178 1.342082 CCGTGCGTTTCCTCGTACTG 61.342 60.000 5.91 0.00 42.39 2.74
1024 1179 0.662374 CGTGCGTTTCCTCGTACTGT 60.662 55.000 5.91 0.00 42.39 3.55
1025 1180 1.058404 GTGCGTTTCCTCGTACTGTC 58.942 55.000 0.00 0.00 41.62 3.51
1026 1181 0.038892 TGCGTTTCCTCGTACTGTCC 60.039 55.000 0.00 0.00 0.00 4.02
1036 1194 0.392729 CGTACTGTCCCTCCTCGTCT 60.393 60.000 0.00 0.00 0.00 4.18
1186 1344 1.440938 CGGCAAAAACCTGACGGTGA 61.441 55.000 0.00 0.00 44.38 4.02
1263 1421 4.021925 GCCGCCCACTTCCTCACT 62.022 66.667 0.00 0.00 0.00 3.41
1295 1453 4.230603 CGTCCTCTACTACGCCCA 57.769 61.111 0.00 0.00 31.66 5.36
1400 1570 2.728383 CGTCAACGTCTTCCGCGT 60.728 61.111 4.92 0.00 45.07 6.01
1695 1883 3.428999 CCAAGTACAACGTCTGGATCGAT 60.429 47.826 0.00 0.00 0.00 3.59
1734 1922 1.755179 GCATCAAGGTGTACATGGCT 58.245 50.000 0.00 0.00 0.00 4.75
1919 2113 0.758685 CCCAACAACAAGGCCCTCAA 60.759 55.000 0.00 0.00 0.00 3.02
1920 2114 0.675633 CCAACAACAAGGCCCTCAAG 59.324 55.000 0.00 0.00 0.00 3.02
1990 2184 1.222387 GCCGCATTGGGGTACTACA 59.778 57.895 19.74 0.00 37.97 2.74
2128 2322 1.598676 CGACCAACAACTTCGACGAGA 60.599 52.381 0.00 0.00 34.62 4.04
2401 2597 5.854338 CGCGGTTTACAACTTGTTGATTTAT 59.146 36.000 18.82 0.41 0.00 1.40
2411 2607 9.485206 ACAACTTGTTGATTTATTAGTAGTCGT 57.515 29.630 18.82 0.00 0.00 4.34
2414 2610 9.798994 ACTTGTTGATTTATTAGTAGTCGTAGG 57.201 33.333 0.00 0.00 0.00 3.18
2606 2802 2.884639 TGCTTTGACCCTTCACTTTAGC 59.115 45.455 0.00 0.00 0.00 3.09
2742 3262 5.355071 GGACATCTTGCTCAATTATCACACA 59.645 40.000 0.00 0.00 0.00 3.72
2779 3333 5.590259 GGATACACCTCATTACAAGCAATGT 59.410 40.000 0.67 0.67 39.78 2.71
2797 3351 7.557724 AGCAATGTCCATCATGATCTATCTAG 58.442 38.462 4.86 0.00 36.81 2.43
2886 3451 2.681344 GGGTAAGGCCACATTTCTAACG 59.319 50.000 5.01 0.00 39.65 3.18
2890 3455 3.261981 AGGCCACATTTCTAACGGTAG 57.738 47.619 5.01 0.00 0.00 3.18
2919 3484 8.892723 TCATATGCTGTAATCCAAACTTTGTAG 58.107 33.333 0.00 0.00 0.00 2.74
2920 3485 5.957842 TGCTGTAATCCAAACTTTGTAGG 57.042 39.130 0.88 0.00 0.00 3.18
2921 3486 5.626142 TGCTGTAATCCAAACTTTGTAGGA 58.374 37.500 0.88 0.00 34.12 2.94
2929 3494 6.182507 TCCAAACTTTGTAGGAGTACATGT 57.817 37.500 2.69 2.69 38.98 3.21
2930 3495 7.305813 TCCAAACTTTGTAGGAGTACATGTA 57.694 36.000 0.08 0.08 38.98 2.29
2931 3496 7.156673 TCCAAACTTTGTAGGAGTACATGTAC 58.843 38.462 25.51 25.51 38.98 2.90
2932 3497 6.932400 CCAAACTTTGTAGGAGTACATGTACA 59.068 38.462 32.02 14.78 38.98 2.90
2933 3498 7.606456 CCAAACTTTGTAGGAGTACATGTACAT 59.394 37.037 32.02 21.23 38.98 2.29
2934 3499 8.443160 CAAACTTTGTAGGAGTACATGTACATG 58.557 37.037 32.02 29.97 38.98 3.21
2935 3500 7.476540 ACTTTGTAGGAGTACATGTACATGA 57.523 36.000 36.36 20.00 38.98 3.07
2936 3501 7.321153 ACTTTGTAGGAGTACATGTACATGAC 58.679 38.462 36.36 27.71 38.98 3.06
2937 3502 6.844097 TTGTAGGAGTACATGTACATGACA 57.156 37.500 36.36 25.47 43.97 3.58
2939 3504 7.039313 TGTAGGAGTACATGTACATGACATC 57.961 40.000 36.36 27.23 46.33 3.06
2940 3505 6.833933 TGTAGGAGTACATGTACATGACATCT 59.166 38.462 36.36 26.85 46.33 2.90
2941 3506 6.398234 AGGAGTACATGTACATGACATCTC 57.602 41.667 36.36 29.88 46.33 2.75
2942 3507 5.303078 AGGAGTACATGTACATGACATCTCC 59.697 44.000 36.36 34.46 46.33 3.71
2943 3508 5.188327 AGTACATGTACATGACATCTCCG 57.812 43.478 36.36 11.96 46.33 4.63
2944 3509 4.645136 AGTACATGTACATGACATCTCCGT 59.355 41.667 36.36 16.77 46.33 4.69
2945 3510 4.471904 ACATGTACATGACATCTCCGTT 57.528 40.909 36.36 11.95 46.33 4.44
2946 3511 4.832248 ACATGTACATGACATCTCCGTTT 58.168 39.130 36.36 11.46 46.33 3.60
2947 3512 5.972935 ACATGTACATGACATCTCCGTTTA 58.027 37.500 36.36 0.00 46.33 2.01
2948 3513 6.403049 ACATGTACATGACATCTCCGTTTAA 58.597 36.000 36.36 0.00 46.33 1.52
2949 3514 6.535150 ACATGTACATGACATCTCCGTTTAAG 59.465 38.462 36.36 9.22 46.33 1.85
2950 3515 6.275494 TGTACATGACATCTCCGTTTAAGA 57.725 37.500 0.00 0.00 31.20 2.10
2951 3516 6.873997 TGTACATGACATCTCCGTTTAAGAT 58.126 36.000 0.00 0.00 33.74 2.40
2952 3517 7.327975 TGTACATGACATCTCCGTTTAAGATT 58.672 34.615 0.00 0.00 31.05 2.40
2953 3518 8.471609 TGTACATGACATCTCCGTTTAAGATTA 58.528 33.333 0.00 0.00 31.05 1.75
2954 3519 9.309516 GTACATGACATCTCCGTTTAAGATTAA 57.690 33.333 0.00 0.00 31.05 1.40
2955 3520 8.964476 ACATGACATCTCCGTTTAAGATTAAT 57.036 30.769 0.00 0.00 31.05 1.40
2984 3549 8.783833 ATAGGCTTAGATGTGCAATACTTATG 57.216 34.615 0.00 0.00 0.00 1.90
2985 3550 6.000219 AGGCTTAGATGTGCAATACTTATGG 59.000 40.000 0.00 0.00 0.00 2.74
2986 3551 5.765182 GGCTTAGATGTGCAATACTTATGGT 59.235 40.000 0.00 0.00 0.00 3.55
2987 3552 6.934645 GGCTTAGATGTGCAATACTTATGGTA 59.065 38.462 0.00 0.00 34.62 3.25
2988 3553 7.095187 GGCTTAGATGTGCAATACTTATGGTAC 60.095 40.741 0.00 0.00 32.72 3.34
2992 3557 7.969536 GATGTGCAATACTTATGGTACATCT 57.030 36.000 19.82 0.00 46.94 2.90
2993 3558 8.383318 GATGTGCAATACTTATGGTACATCTT 57.617 34.615 19.82 0.00 46.94 2.40
2994 3559 9.489084 GATGTGCAATACTTATGGTACATCTTA 57.511 33.333 19.82 0.00 46.94 2.10
3007 3572 6.049149 TGGTACATCTTAGATGTGCTTTAGC 58.951 40.000 31.37 22.74 42.50 3.09
3027 3592 8.830201 TTTAGCAAAACTGCATTCATAATGTT 57.170 26.923 0.00 0.00 41.01 2.71
3046 3611 7.798486 AATGTTAGATTAGACTATAAGCGCG 57.202 36.000 0.00 0.00 0.00 6.86
3049 3614 3.566523 AGATTAGACTATAAGCGCGCAC 58.433 45.455 35.10 14.26 0.00 5.34
3052 3617 2.295253 AGACTATAAGCGCGCACTTT 57.705 45.000 35.10 21.40 0.00 2.66
3054 3619 2.348666 AGACTATAAGCGCGCACTTTTG 59.651 45.455 35.10 19.73 0.00 2.44
3091 3657 9.350357 CTGATGATCTAAAACATTTTGTCCAAG 57.650 33.333 0.00 0.00 0.00 3.61
3102 3668 7.765695 ACATTTTGTCCAAGATTATCACTGT 57.234 32.000 0.00 0.00 0.00 3.55
3260 3845 1.071987 CCAGCACCTGTTCAGCTCA 59.928 57.895 0.00 0.00 36.26 4.26
3311 3896 1.681327 GTGGGAGCTCCGGTACAGA 60.681 63.158 26.36 1.21 38.76 3.41
3368 3953 3.112709 GACCAGTTCGACCAGCGC 61.113 66.667 0.00 0.00 40.61 5.92
3959 4544 4.278956 GTGACATCCACGTCCACC 57.721 61.111 0.00 0.00 35.86 4.61
4029 4614 0.951040 GCAAGACACCTCCGGTTCAG 60.951 60.000 0.00 0.00 31.02 3.02
4097 4682 4.916099 AATTGTTTAAGGACGCGTCTAC 57.084 40.909 35.50 24.13 0.00 2.59
4167 4772 1.963515 GCATGTTCCTGTCCACCTTTT 59.036 47.619 0.00 0.00 0.00 2.27
4185 4790 7.338710 CACCTTTTCAGGATAGGAAAGTATCA 58.661 38.462 0.00 0.00 44.19 2.15
4261 4898 2.283809 CGATCCCTCTCCCACCCT 59.716 66.667 0.00 0.00 0.00 4.34
4522 5177 0.725133 TCTTCCAGATCCCCCTCCTT 59.275 55.000 0.00 0.00 0.00 3.36
4532 5187 1.735455 CCCCCTCCTTTTTCCCCACA 61.735 60.000 0.00 0.00 0.00 4.17
4672 5336 9.842775 TCTGATGTTAAGCATGATATTTCTTCT 57.157 29.630 0.00 0.00 38.06 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.394224 TGTTTTTCGGAACTTTGGACTTT 57.606 34.783 0.00 0.00 0.00 2.66
28 29 3.113322 GCTGTTTTTCGGAACTTTGGAC 58.887 45.455 0.00 0.00 0.00 4.02
29 30 2.223386 CGCTGTTTTTCGGAACTTTGGA 60.223 45.455 0.00 0.00 0.00 3.53
30 31 2.116366 CGCTGTTTTTCGGAACTTTGG 58.884 47.619 0.00 0.00 0.00 3.28
31 32 1.516864 GCGCTGTTTTTCGGAACTTTG 59.483 47.619 0.00 0.00 0.00 2.77
67 75 1.200020 CAAAGCTTCAGTTTAGGGCCG 59.800 52.381 0.00 0.00 0.00 6.13
84 92 6.821665 ACTAGTACAACAAGACAAGAAGCAAA 59.178 34.615 0.00 0.00 0.00 3.68
123 131 7.145323 GCAGTTTATTCTAGAAGCCACAAAAA 58.855 34.615 11.53 0.86 0.00 1.94
124 132 6.264292 TGCAGTTTATTCTAGAAGCCACAAAA 59.736 34.615 11.53 2.41 0.00 2.44
125 133 5.767665 TGCAGTTTATTCTAGAAGCCACAAA 59.232 36.000 11.53 3.67 0.00 2.83
126 134 5.312895 TGCAGTTTATTCTAGAAGCCACAA 58.687 37.500 11.53 0.00 0.00 3.33
127 135 4.905429 TGCAGTTTATTCTAGAAGCCACA 58.095 39.130 11.53 0.43 0.00 4.17
128 136 5.880054 TTGCAGTTTATTCTAGAAGCCAC 57.120 39.130 11.53 6.92 0.00 5.01
129 137 7.201732 GCTTATTGCAGTTTATTCTAGAAGCCA 60.202 37.037 11.53 0.17 42.31 4.75
130 138 7.012799 AGCTTATTGCAGTTTATTCTAGAAGCC 59.987 37.037 11.53 0.00 45.94 4.35
131 139 7.854916 CAGCTTATTGCAGTTTATTCTAGAAGC 59.145 37.037 11.53 8.12 45.94 3.86
132 140 7.854916 GCAGCTTATTGCAGTTTATTCTAGAAG 59.145 37.037 11.53 0.00 45.94 2.85
133 141 7.201732 GGCAGCTTATTGCAGTTTATTCTAGAA 60.202 37.037 7.82 7.82 45.86 2.10
134 142 6.260936 GGCAGCTTATTGCAGTTTATTCTAGA 59.739 38.462 0.00 0.00 45.86 2.43
135 143 6.433766 GGCAGCTTATTGCAGTTTATTCTAG 58.566 40.000 0.00 0.00 45.86 2.43
136 144 5.299279 GGGCAGCTTATTGCAGTTTATTCTA 59.701 40.000 0.00 0.00 45.86 2.10
137 145 4.098501 GGGCAGCTTATTGCAGTTTATTCT 59.901 41.667 0.00 0.00 45.86 2.40
138 146 4.363138 GGGCAGCTTATTGCAGTTTATTC 58.637 43.478 0.00 0.00 45.86 1.75
139 147 3.132824 GGGGCAGCTTATTGCAGTTTATT 59.867 43.478 0.00 0.00 45.86 1.40
140 148 2.695147 GGGGCAGCTTATTGCAGTTTAT 59.305 45.455 0.00 0.00 45.86 1.40
141 149 2.099405 GGGGCAGCTTATTGCAGTTTA 58.901 47.619 0.00 0.00 45.86 2.01
142 150 0.897621 GGGGCAGCTTATTGCAGTTT 59.102 50.000 0.00 0.00 45.86 2.66
143 151 0.040204 AGGGGCAGCTTATTGCAGTT 59.960 50.000 0.00 0.00 45.86 3.16
144 152 0.040204 AAGGGGCAGCTTATTGCAGT 59.960 50.000 0.00 0.00 45.86 4.40
145 153 1.678101 GTAAGGGGCAGCTTATTGCAG 59.322 52.381 0.00 0.00 45.86 4.41
146 154 1.684869 GGTAAGGGGCAGCTTATTGCA 60.685 52.381 0.00 0.00 45.86 4.08
147 155 1.032794 GGTAAGGGGCAGCTTATTGC 58.967 55.000 0.00 0.00 43.34 3.56
148 156 2.736670 AGGTAAGGGGCAGCTTATTG 57.263 50.000 0.00 0.00 0.00 1.90
149 157 2.106684 GCTAGGTAAGGGGCAGCTTATT 59.893 50.000 0.00 0.00 0.00 1.40
150 158 1.700186 GCTAGGTAAGGGGCAGCTTAT 59.300 52.381 0.00 0.00 0.00 1.73
151 159 1.129058 GCTAGGTAAGGGGCAGCTTA 58.871 55.000 0.00 0.00 0.00 3.09
152 160 0.621862 AGCTAGGTAAGGGGCAGCTT 60.622 55.000 0.00 0.00 39.49 3.74
153 161 0.621862 AAGCTAGGTAAGGGGCAGCT 60.622 55.000 0.00 0.00 44.21 4.24
154 162 1.129058 TAAGCTAGGTAAGGGGCAGC 58.871 55.000 0.00 0.00 0.00 5.25
155 163 3.648545 AGAATAAGCTAGGTAAGGGGCAG 59.351 47.826 0.00 0.00 0.00 4.85
156 164 3.665443 AGAATAAGCTAGGTAAGGGGCA 58.335 45.455 0.00 0.00 0.00 5.36
157 165 5.820404 TTAGAATAAGCTAGGTAAGGGGC 57.180 43.478 0.00 0.00 0.00 5.80
158 166 7.803131 ACTTTTAGAATAAGCTAGGTAAGGGG 58.197 38.462 0.00 0.00 0.00 4.79
159 167 8.483758 TGACTTTTAGAATAAGCTAGGTAAGGG 58.516 37.037 0.00 0.00 0.00 3.95
160 168 9.886132 TTGACTTTTAGAATAAGCTAGGTAAGG 57.114 33.333 0.00 0.00 0.00 2.69
198 206 7.046033 CGGAGGAAGTAATAGGCTTCTAAAAA 58.954 38.462 0.00 0.00 41.36 1.94
199 207 6.155737 ACGGAGGAAGTAATAGGCTTCTAAAA 59.844 38.462 0.00 0.00 41.36 1.52
200 208 5.659971 ACGGAGGAAGTAATAGGCTTCTAAA 59.340 40.000 0.00 0.00 41.36 1.85
201 209 5.206587 ACGGAGGAAGTAATAGGCTTCTAA 58.793 41.667 0.00 0.00 41.36 2.10
202 210 4.801164 ACGGAGGAAGTAATAGGCTTCTA 58.199 43.478 0.00 0.00 41.36 2.10
203 211 3.644335 ACGGAGGAAGTAATAGGCTTCT 58.356 45.455 0.00 0.00 41.36 2.85
204 212 4.370049 GAACGGAGGAAGTAATAGGCTTC 58.630 47.826 0.00 0.00 41.01 3.86
205 213 3.181478 CGAACGGAGGAAGTAATAGGCTT 60.181 47.826 0.00 0.00 0.00 4.35
206 214 2.361438 CGAACGGAGGAAGTAATAGGCT 59.639 50.000 0.00 0.00 0.00 4.58
207 215 2.545322 CCGAACGGAGGAAGTAATAGGC 60.545 54.545 7.53 0.00 37.50 3.93
208 216 2.954318 TCCGAACGGAGGAAGTAATAGG 59.046 50.000 12.04 0.00 39.76 2.57
209 217 4.644103 TTCCGAACGGAGGAAGTAATAG 57.356 45.455 15.34 0.00 46.06 1.73
217 225 2.564062 ACAAGTAATTCCGAACGGAGGA 59.436 45.455 15.34 3.20 46.06 3.71
218 226 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
219 227 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
220 228 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
221 229 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
222 230 2.026038 CGACGACAAGTAATTCCGAACG 59.974 50.000 0.00 0.00 0.00 3.95
223 231 3.236816 TCGACGACAAGTAATTCCGAAC 58.763 45.455 0.00 0.00 0.00 3.95
224 232 3.557577 TCGACGACAAGTAATTCCGAA 57.442 42.857 0.00 0.00 0.00 4.30
225 233 3.557577 TTCGACGACAAGTAATTCCGA 57.442 42.857 0.00 0.00 0.00 4.55
226 234 4.835199 ATTTCGACGACAAGTAATTCCG 57.165 40.909 0.00 0.00 0.00 4.30
227 235 6.160664 TCAATTTCGACGACAAGTAATTCC 57.839 37.500 0.00 0.00 0.00 3.01
228 236 9.749490 TTTATCAATTTCGACGACAAGTAATTC 57.251 29.630 0.00 0.00 0.00 2.17
232 240 9.536558 CATTTTTATCAATTTCGACGACAAGTA 57.463 29.630 0.00 0.00 0.00 2.24
233 241 7.537306 CCATTTTTATCAATTTCGACGACAAGT 59.463 33.333 0.00 0.00 0.00 3.16
234 242 7.748683 TCCATTTTTATCAATTTCGACGACAAG 59.251 33.333 0.00 0.00 0.00 3.16
235 243 7.585867 TCCATTTTTATCAATTTCGACGACAA 58.414 30.769 0.00 0.00 0.00 3.18
236 244 7.135089 TCCATTTTTATCAATTTCGACGACA 57.865 32.000 0.00 0.00 0.00 4.35
237 245 9.878599 ATATCCATTTTTATCAATTTCGACGAC 57.121 29.630 0.00 0.00 0.00 4.34
281 289 9.685276 TTGTCAAAGAAATGGATGTATGTAGAT 57.315 29.630 0.00 0.00 0.00 1.98
282 290 9.166173 CTTGTCAAAGAAATGGATGTATGTAGA 57.834 33.333 0.00 0.00 35.19 2.59
283 291 8.950210 ACTTGTCAAAGAAATGGATGTATGTAG 58.050 33.333 0.00 0.00 36.84 2.74
284 292 8.862325 ACTTGTCAAAGAAATGGATGTATGTA 57.138 30.769 0.00 0.00 36.84 2.29
285 293 7.765695 ACTTGTCAAAGAAATGGATGTATGT 57.234 32.000 0.00 0.00 36.84 2.29
289 297 9.696917 GAAAATACTTGTCAAAGAAATGGATGT 57.303 29.630 0.00 0.00 36.84 3.06
290 298 9.695526 TGAAAATACTTGTCAAAGAAATGGATG 57.304 29.630 0.00 0.00 36.84 3.51
291 299 9.918630 CTGAAAATACTTGTCAAAGAAATGGAT 57.081 29.630 0.00 0.00 36.84 3.41
292 300 9.130661 TCTGAAAATACTTGTCAAAGAAATGGA 57.869 29.630 0.00 0.00 36.84 3.41
293 301 9.185192 GTCTGAAAATACTTGTCAAAGAAATGG 57.815 33.333 0.00 0.00 36.84 3.16
294 302 9.185192 GGTCTGAAAATACTTGTCAAAGAAATG 57.815 33.333 0.00 0.00 36.84 2.32
295 303 8.076178 CGGTCTGAAAATACTTGTCAAAGAAAT 58.924 33.333 0.00 0.00 36.84 2.17
296 304 7.281324 TCGGTCTGAAAATACTTGTCAAAGAAA 59.719 33.333 0.00 0.00 36.84 2.52
297 305 6.764085 TCGGTCTGAAAATACTTGTCAAAGAA 59.236 34.615 0.00 0.00 36.84 2.52
298 306 6.285224 TCGGTCTGAAAATACTTGTCAAAGA 58.715 36.000 0.00 0.00 36.84 2.52
299 307 6.347725 CCTCGGTCTGAAAATACTTGTCAAAG 60.348 42.308 0.00 0.00 39.49 2.77
300 308 5.468746 CCTCGGTCTGAAAATACTTGTCAAA 59.531 40.000 0.00 0.00 0.00 2.69
301 309 4.994852 CCTCGGTCTGAAAATACTTGTCAA 59.005 41.667 0.00 0.00 0.00 3.18
302 310 4.282449 TCCTCGGTCTGAAAATACTTGTCA 59.718 41.667 0.00 0.00 0.00 3.58
303 311 4.817517 TCCTCGGTCTGAAAATACTTGTC 58.182 43.478 0.00 0.00 0.00 3.18
304 312 4.884668 TCCTCGGTCTGAAAATACTTGT 57.115 40.909 0.00 0.00 0.00 3.16
305 313 5.238583 ACTTCCTCGGTCTGAAAATACTTG 58.761 41.667 0.00 0.00 0.00 3.16
306 314 5.485209 ACTTCCTCGGTCTGAAAATACTT 57.515 39.130 0.00 0.00 0.00 2.24
307 315 5.715753 ACTACTTCCTCGGTCTGAAAATACT 59.284 40.000 0.00 0.00 0.00 2.12
308 316 5.963594 ACTACTTCCTCGGTCTGAAAATAC 58.036 41.667 0.00 0.00 0.00 1.89
309 317 6.600882 AACTACTTCCTCGGTCTGAAAATA 57.399 37.500 0.00 0.00 0.00 1.40
310 318 5.485209 AACTACTTCCTCGGTCTGAAAAT 57.515 39.130 0.00 0.00 0.00 1.82
311 319 4.950205 AACTACTTCCTCGGTCTGAAAA 57.050 40.909 0.00 0.00 0.00 2.29
312 320 5.771666 TCTTAACTACTTCCTCGGTCTGAAA 59.228 40.000 0.00 0.00 0.00 2.69
313 321 5.182760 GTCTTAACTACTTCCTCGGTCTGAA 59.817 44.000 0.00 0.00 0.00 3.02
314 322 4.699257 GTCTTAACTACTTCCTCGGTCTGA 59.301 45.833 0.00 0.00 0.00 3.27
315 323 4.701171 AGTCTTAACTACTTCCTCGGTCTG 59.299 45.833 0.00 0.00 32.59 3.51
316 324 4.920999 AGTCTTAACTACTTCCTCGGTCT 58.079 43.478 0.00 0.00 32.59 3.85
317 325 5.182760 TCAAGTCTTAACTACTTCCTCGGTC 59.817 44.000 0.00 0.00 34.99 4.79
318 326 5.075493 TCAAGTCTTAACTACTTCCTCGGT 58.925 41.667 0.00 0.00 34.99 4.69
319 327 5.640189 TCAAGTCTTAACTACTTCCTCGG 57.360 43.478 0.00 0.00 34.99 4.63
320 328 7.090953 AGATCAAGTCTTAACTACTTCCTCG 57.909 40.000 0.00 0.00 34.99 4.63
365 373 8.861086 CCCTATCTAGTTTATTCTAGAAGCACA 58.139 37.037 11.53 0.00 45.97 4.57
366 374 8.308207 CCCCTATCTAGTTTATTCTAGAAGCAC 58.692 40.741 11.53 7.26 45.97 4.40
367 375 8.232412 TCCCCTATCTAGTTTATTCTAGAAGCA 58.768 37.037 11.53 0.00 45.97 3.91
368 376 8.525316 GTCCCCTATCTAGTTTATTCTAGAAGC 58.475 40.741 11.53 1.69 45.97 3.86
369 377 9.589461 TGTCCCCTATCTAGTTTATTCTAGAAG 57.411 37.037 11.53 0.00 45.97 2.85
370 378 9.589461 CTGTCCCCTATCTAGTTTATTCTAGAA 57.411 37.037 7.82 7.82 45.97 2.10
371 379 7.670559 GCTGTCCCCTATCTAGTTTATTCTAGA 59.329 40.741 6.01 6.01 46.59 2.43
372 380 7.672239 AGCTGTCCCCTATCTAGTTTATTCTAG 59.328 40.741 0.00 0.00 38.83 2.43
373 381 7.536625 AGCTGTCCCCTATCTAGTTTATTCTA 58.463 38.462 0.00 0.00 0.00 2.10
374 382 6.386284 AGCTGTCCCCTATCTAGTTTATTCT 58.614 40.000 0.00 0.00 0.00 2.40
375 383 6.673839 AGCTGTCCCCTATCTAGTTTATTC 57.326 41.667 0.00 0.00 0.00 1.75
376 384 8.743636 ATAAGCTGTCCCCTATCTAGTTTATT 57.256 34.615 0.00 0.00 0.00 1.40
377 385 8.743636 AATAAGCTGTCCCCTATCTAGTTTAT 57.256 34.615 0.00 0.00 0.00 1.40
378 386 8.562949 AAATAAGCTGTCCCCTATCTAGTTTA 57.437 34.615 0.00 0.00 0.00 2.01
379 387 7.453141 AAATAAGCTGTCCCCTATCTAGTTT 57.547 36.000 0.00 0.00 0.00 2.66
380 388 7.283329 CAAAATAAGCTGTCCCCTATCTAGTT 58.717 38.462 0.00 0.00 0.00 2.24
381 389 6.183361 CCAAAATAAGCTGTCCCCTATCTAGT 60.183 42.308 0.00 0.00 0.00 2.57
382 390 6.043243 TCCAAAATAAGCTGTCCCCTATCTAG 59.957 42.308 0.00 0.00 0.00 2.43
383 391 5.908831 TCCAAAATAAGCTGTCCCCTATCTA 59.091 40.000 0.00 0.00 0.00 1.98
384 392 4.726825 TCCAAAATAAGCTGTCCCCTATCT 59.273 41.667 0.00 0.00 0.00 1.98
385 393 5.048846 TCCAAAATAAGCTGTCCCCTATC 57.951 43.478 0.00 0.00 0.00 2.08
386 394 5.449553 CTTCCAAAATAAGCTGTCCCCTAT 58.550 41.667 0.00 0.00 0.00 2.57
387 395 4.325030 CCTTCCAAAATAAGCTGTCCCCTA 60.325 45.833 0.00 0.00 0.00 3.53
388 396 3.564352 CCTTCCAAAATAAGCTGTCCCCT 60.564 47.826 0.00 0.00 0.00 4.79
389 397 2.760650 CCTTCCAAAATAAGCTGTCCCC 59.239 50.000 0.00 0.00 0.00 4.81
390 398 3.431415 ACCTTCCAAAATAAGCTGTCCC 58.569 45.455 0.00 0.00 0.00 4.46
391 399 4.079253 TGACCTTCCAAAATAAGCTGTCC 58.921 43.478 0.00 0.00 0.00 4.02
392 400 5.705609 TTGACCTTCCAAAATAAGCTGTC 57.294 39.130 0.00 0.00 0.00 3.51
393 401 6.478512 TTTTGACCTTCCAAAATAAGCTGT 57.521 33.333 0.00 0.00 40.04 4.40
414 422 5.237815 GGCTAGTTATTTTGCTGGCTTTTT 58.762 37.500 0.00 0.00 38.89 1.94
415 423 4.322725 GGGCTAGTTATTTTGCTGGCTTTT 60.323 41.667 0.00 0.00 38.89 2.27
416 424 3.195610 GGGCTAGTTATTTTGCTGGCTTT 59.804 43.478 0.00 0.00 38.89 3.51
417 425 2.760650 GGGCTAGTTATTTTGCTGGCTT 59.239 45.455 0.00 0.00 38.89 4.35
418 426 2.024941 AGGGCTAGTTATTTTGCTGGCT 60.025 45.455 0.00 0.00 38.89 4.75
419 427 2.379005 AGGGCTAGTTATTTTGCTGGC 58.621 47.619 0.00 0.00 38.29 4.85
420 428 3.065371 CGAAGGGCTAGTTATTTTGCTGG 59.935 47.826 0.00 0.00 0.00 4.85
421 429 3.938963 TCGAAGGGCTAGTTATTTTGCTG 59.061 43.478 0.00 0.00 0.00 4.41
422 430 3.939592 GTCGAAGGGCTAGTTATTTTGCT 59.060 43.478 0.00 0.00 0.00 3.91
423 431 3.064958 GGTCGAAGGGCTAGTTATTTTGC 59.935 47.826 0.00 0.00 0.00 3.68
424 432 3.308866 CGGTCGAAGGGCTAGTTATTTTG 59.691 47.826 0.00 0.00 0.00 2.44
425 433 3.196254 TCGGTCGAAGGGCTAGTTATTTT 59.804 43.478 0.00 0.00 0.00 1.82
426 434 2.762327 TCGGTCGAAGGGCTAGTTATTT 59.238 45.455 0.00 0.00 0.00 1.40
427 435 2.361438 CTCGGTCGAAGGGCTAGTTATT 59.639 50.000 0.00 0.00 0.00 1.40
428 436 1.955080 CTCGGTCGAAGGGCTAGTTAT 59.045 52.381 0.00 0.00 0.00 1.89
429 437 1.386533 CTCGGTCGAAGGGCTAGTTA 58.613 55.000 0.00 0.00 0.00 2.24
430 438 1.946475 GCTCGGTCGAAGGGCTAGTT 61.946 60.000 6.75 0.00 0.00 2.24
431 439 2.416432 GCTCGGTCGAAGGGCTAGT 61.416 63.158 6.75 0.00 0.00 2.57
432 440 2.122167 AGCTCGGTCGAAGGGCTAG 61.122 63.158 14.08 0.00 0.00 3.42
433 441 2.044252 AGCTCGGTCGAAGGGCTA 60.044 61.111 14.08 0.00 0.00 3.93
434 442 3.764466 CAGCTCGGTCGAAGGGCT 61.764 66.667 10.39 10.39 0.00 5.19
435 443 3.708220 CTCAGCTCGGTCGAAGGGC 62.708 68.421 5.93 5.93 0.00 5.19
436 444 2.492090 CTCAGCTCGGTCGAAGGG 59.508 66.667 0.00 0.00 0.00 3.95
437 445 2.202676 GCTCAGCTCGGTCGAAGG 60.203 66.667 0.00 0.00 0.00 3.46
438 446 0.389166 AAAGCTCAGCTCGGTCGAAG 60.389 55.000 0.00 0.00 38.25 3.79
443 451 0.107945 GGATCAAAGCTCAGCTCGGT 60.108 55.000 0.00 0.00 38.25 4.69
484 492 2.478539 GCGCTGGAGCTTGAAATTTAGG 60.479 50.000 0.00 0.00 39.32 2.69
491 499 2.620112 GCTTGCGCTGGAGCTTGAA 61.620 57.895 19.05 0.00 39.32 2.69
532 540 8.426569 AGTAAATGTACTCCTACTGGTAACAA 57.573 34.615 0.00 0.00 41.06 2.83
533 541 8.960591 GTAGTAAATGTACTCCTACTGGTAACA 58.039 37.037 0.00 0.00 42.55 2.41
534 542 8.409371 GGTAGTAAATGTACTCCTACTGGTAAC 58.591 40.741 0.00 0.00 41.06 2.50
584 637 3.636300 TGTGTTTGCTATTTCTTGCCTGT 59.364 39.130 0.00 0.00 0.00 4.00
603 656 3.461061 ACGGAGTGATAGCAATGATGTG 58.539 45.455 0.00 0.00 42.51 3.21
626 765 0.331616 TCGGAGTGGAGACCTCATCA 59.668 55.000 0.00 0.00 31.56 3.07
633 772 5.121811 TGTACTAGTAATCGGAGTGGAGAC 58.878 45.833 3.61 0.00 0.00 3.36
650 789 9.622004 CGTAATCTTTCTGAGAAGTTTGTACTA 57.378 33.333 0.00 0.00 38.06 1.82
651 790 7.116519 GCGTAATCTTTCTGAGAAGTTTGTACT 59.883 37.037 0.00 0.00 38.06 2.73
652 791 7.095774 TGCGTAATCTTTCTGAGAAGTTTGTAC 60.096 37.037 0.00 0.00 38.06 2.90
677 816 1.248101 ATTTCCCCGGGTCGCTTTTG 61.248 55.000 21.85 0.35 0.00 2.44
689 828 1.453928 CTCCTGCCCGAATTTCCCC 60.454 63.158 0.00 0.00 0.00 4.81
781 926 2.258591 GGTTCTCTCGCACTCGCA 59.741 61.111 0.00 0.00 38.40 5.10
787 932 0.036306 GGGAAAAGGGTTCTCTCGCA 59.964 55.000 0.00 0.00 0.00 5.10
789 934 0.320697 ACGGGAAAAGGGTTCTCTCG 59.679 55.000 0.00 0.00 0.00 4.04
791 936 2.442126 AGAAACGGGAAAAGGGTTCTCT 59.558 45.455 0.00 0.00 0.00 3.10
792 937 2.812591 GAGAAACGGGAAAAGGGTTCTC 59.187 50.000 3.39 3.39 0.00 2.87
793 938 2.488528 GGAGAAACGGGAAAAGGGTTCT 60.489 50.000 0.00 0.00 0.00 3.01
794 939 1.884579 GGAGAAACGGGAAAAGGGTTC 59.115 52.381 0.00 0.00 0.00 3.62
795 940 1.479942 GGGAGAAACGGGAAAAGGGTT 60.480 52.381 0.00 0.00 0.00 4.11
796 941 0.111832 GGGAGAAACGGGAAAAGGGT 59.888 55.000 0.00 0.00 0.00 4.34
807 952 1.531578 GCGAAAGTCACAGGGAGAAAC 59.468 52.381 0.00 0.00 0.00 2.78
836 981 3.303990 CCGCCGGTTTAGATGAATGAATG 60.304 47.826 1.90 0.00 0.00 2.67
837 982 2.878406 CCGCCGGTTTAGATGAATGAAT 59.122 45.455 1.90 0.00 0.00 2.57
838 983 2.285083 CCGCCGGTTTAGATGAATGAA 58.715 47.619 1.90 0.00 0.00 2.57
839 984 1.948104 CCGCCGGTTTAGATGAATGA 58.052 50.000 1.90 0.00 0.00 2.57
916 1061 4.969196 CTGGACGCCGTGCACTGT 62.969 66.667 16.19 10.58 29.42 3.55
1023 1178 2.579738 GCCAAGACGAGGAGGGAC 59.420 66.667 0.00 0.00 0.00 4.46
1024 1179 2.683933 GGCCAAGACGAGGAGGGA 60.684 66.667 0.00 0.00 0.00 4.20
1025 1180 2.685380 AGGCCAAGACGAGGAGGG 60.685 66.667 5.01 0.00 0.00 4.30
1026 1181 2.726351 GGAGGCCAAGACGAGGAGG 61.726 68.421 5.01 0.00 0.00 4.30
1036 1194 2.203983 TGAGCTGGAGGAGGCCAA 60.204 61.111 5.01 0.00 37.52 4.52
1108 1266 4.899239 GCTCCCCGCATCCAGACG 62.899 72.222 0.00 0.00 38.92 4.18
1132 1290 2.484889 GAAGTTGGAGAAGCTGAACGT 58.515 47.619 0.00 0.00 0.00 3.99
1133 1291 1.801178 GGAAGTTGGAGAAGCTGAACG 59.199 52.381 0.00 0.00 0.00 3.95
1186 1344 2.278857 GATGTCAGCGTCGCCGAT 60.279 61.111 14.86 0.26 35.63 4.18
1197 1355 2.359850 GCGCCCTTGGTGATGTCA 60.360 61.111 0.00 0.00 34.74 3.58
1263 1421 3.919973 GACGCGGCCGGACTTGTTA 62.920 63.158 29.38 0.00 39.22 2.41
1721 1909 1.066858 CGAAGTCAGCCATGTACACCT 60.067 52.381 0.00 0.00 0.00 4.00
1734 1922 1.289066 CTTGGCGTCCTCGAAGTCA 59.711 57.895 0.00 0.00 39.71 3.41
1839 2030 2.289444 GCAGTTGAGCTGGTACTTGGTA 60.289 50.000 0.00 0.00 45.14 3.25
1902 2093 0.032540 GCTTGAGGGCCTTGTTGTTG 59.967 55.000 7.89 0.00 0.00 3.33
2128 2322 2.687610 CCTGCCCCAGCTTCATCCT 61.688 63.158 0.00 0.00 40.80 3.24
2179 2373 2.279918 GTTGCTGTGGTCGTCGGT 60.280 61.111 0.00 0.00 0.00 4.69
2232 2426 2.730672 CGCCCGCGAGAACTTCTTG 61.731 63.158 8.23 1.93 42.83 3.02
2484 2680 4.614993 CGACACGAATTGGCCTTTGTTAAT 60.615 41.667 3.32 0.00 0.00 1.40
2606 2802 4.153986 CGCATTCAAGCTGTAAAGTTCAG 58.846 43.478 0.00 0.00 36.18 3.02
2742 3262 5.905331 TGAGGTGTATCCATGAAACTATCCT 59.095 40.000 0.00 0.00 39.02 3.24
2779 3333 5.821097 ACCGACTAGATAGATCATGATGGA 58.179 41.667 14.30 0.22 0.00 3.41
2886 3451 5.865085 TGGATTACAGCATATGAACCTACC 58.135 41.667 6.97 1.97 0.00 3.18
2890 3455 6.699575 AGTTTGGATTACAGCATATGAACC 57.300 37.500 6.97 0.00 0.00 3.62
2930 3495 8.964476 ATTAATCTTAAACGGAGATGTCATGT 57.036 30.769 0.00 0.00 34.24 3.21
2958 3523 9.875691 CATAAGTATTGCACATCTAAGCCTATA 57.124 33.333 0.00 0.00 0.00 1.31
2959 3524 7.826252 CCATAAGTATTGCACATCTAAGCCTAT 59.174 37.037 0.00 0.00 0.00 2.57
2960 3525 7.161404 CCATAAGTATTGCACATCTAAGCCTA 58.839 38.462 0.00 0.00 0.00 3.93
2961 3526 6.000219 CCATAAGTATTGCACATCTAAGCCT 59.000 40.000 0.00 0.00 0.00 4.58
2962 3527 5.765182 ACCATAAGTATTGCACATCTAAGCC 59.235 40.000 0.00 0.00 0.00 4.35
2963 3528 6.867662 ACCATAAGTATTGCACATCTAAGC 57.132 37.500 0.00 0.00 0.00 3.09
2964 3529 8.887036 TGTACCATAAGTATTGCACATCTAAG 57.113 34.615 0.00 0.00 32.28 2.18
2965 3530 9.489084 GATGTACCATAAGTATTGCACATCTAA 57.511 33.333 7.84 0.00 31.49 2.10
2966 3531 8.870116 AGATGTACCATAAGTATTGCACATCTA 58.130 33.333 13.03 0.00 37.71 1.98
2967 3532 7.739825 AGATGTACCATAAGTATTGCACATCT 58.260 34.615 10.42 10.42 36.06 2.90
2968 3533 7.969536 AGATGTACCATAAGTATTGCACATC 57.030 36.000 7.30 7.30 33.07 3.06
2969 3534 9.494271 CTAAGATGTACCATAAGTATTGCACAT 57.506 33.333 0.00 0.00 32.28 3.21
2970 3535 8.700973 TCTAAGATGTACCATAAGTATTGCACA 58.299 33.333 0.00 0.00 32.28 4.57
2971 3536 9.712305 ATCTAAGATGTACCATAAGTATTGCAC 57.288 33.333 0.00 0.00 32.28 4.57
2972 3537 9.710900 CATCTAAGATGTACCATAAGTATTGCA 57.289 33.333 0.00 0.00 32.28 4.08
2973 3538 9.712305 ACATCTAAGATGTACCATAAGTATTGC 57.288 33.333 0.00 0.00 32.28 3.56
2975 3540 9.712305 GCACATCTAAGATGTACCATAAGTATT 57.288 33.333 0.00 0.00 32.28 1.89
2976 3541 9.094578 AGCACATCTAAGATGTACCATAAGTAT 57.905 33.333 0.00 0.00 32.28 2.12
2977 3542 8.478775 AGCACATCTAAGATGTACCATAAGTA 57.521 34.615 0.00 0.00 0.00 2.24
2978 3543 7.366847 AGCACATCTAAGATGTACCATAAGT 57.633 36.000 0.00 0.00 0.00 2.24
2979 3544 8.668510 AAAGCACATCTAAGATGTACCATAAG 57.331 34.615 0.00 0.00 0.00 1.73
2980 3545 9.764363 CTAAAGCACATCTAAGATGTACCATAA 57.236 33.333 0.00 0.00 0.00 1.90
2981 3546 7.872993 GCTAAAGCACATCTAAGATGTACCATA 59.127 37.037 0.00 0.00 41.59 2.74
2982 3547 6.708054 GCTAAAGCACATCTAAGATGTACCAT 59.292 38.462 0.00 0.00 41.59 3.55
2983 3548 6.049149 GCTAAAGCACATCTAAGATGTACCA 58.951 40.000 0.00 0.00 41.59 3.25
2984 3549 6.532365 GCTAAAGCACATCTAAGATGTACC 57.468 41.667 0.00 0.00 41.59 3.34
3027 3592 4.454847 AGTGCGCGCTTATAGTCTAATCTA 59.545 41.667 33.29 1.95 0.00 1.98
3046 3611 7.362662 TCATCAGATTCTTGTAACAAAAGTGC 58.637 34.615 0.00 0.00 0.00 4.40
3119 3700 2.539953 CGTACTCTTCATCTCGCACTCC 60.540 54.545 0.00 0.00 0.00 3.85
3125 3706 5.519566 ACTGTACTACGTACTCTTCATCTCG 59.480 44.000 5.83 0.00 39.49 4.04
3146 3727 6.018751 CGTCCATCCAGTCATGTTAATTACTG 60.019 42.308 3.58 3.58 37.64 2.74
3148 3729 5.236478 CCGTCCATCCAGTCATGTTAATTAC 59.764 44.000 0.00 0.00 0.00 1.89
3160 3745 2.665000 CTGCACCGTCCATCCAGT 59.335 61.111 0.00 0.00 0.00 4.00
3161 3746 2.124983 CCTGCACCGTCCATCCAG 60.125 66.667 0.00 0.00 0.00 3.86
3311 3896 4.778143 GCCACGCCCTGGACGATT 62.778 66.667 10.02 0.00 43.95 3.34
4005 4590 2.435059 GGAGGTGTCTTGCTCCGC 60.435 66.667 0.00 0.00 35.96 5.54
4029 4614 0.728542 AAACCGACGTGTCAAACCAC 59.271 50.000 0.00 0.00 0.00 4.16
4139 4725 6.101150 AGGTGGACAGGAACATGCTATATTTA 59.899 38.462 0.00 0.00 0.00 1.40
4185 4790 2.366916 TGGTTGGTTGCGGAAATTGAAT 59.633 40.909 0.00 0.00 0.00 2.57
4193 4823 1.375396 CTCGATGGTTGGTTGCGGA 60.375 57.895 0.00 0.00 0.00 5.54
4261 4898 1.512156 GGGGAAAAGAAGACGCGCAA 61.512 55.000 5.73 0.00 0.00 4.85
4522 5177 4.443598 GCCTTGTACAAATTGTGGGGAAAA 60.444 41.667 10.03 0.00 0.00 2.29
4532 5187 6.015519 TGCATAACTGAAGCCTTGTACAAATT 60.016 34.615 10.03 5.02 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.