Multiple sequence alignment - TraesCS7B01G141300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G141300 chr7B 100.000 5476 0 0 1 5476 179259690 179254215 0.000000e+00 10113
1 TraesCS7B01G141300 chr7D 94.165 3513 116 28 25 3509 220273137 220276588 0.000000e+00 5269
2 TraesCS7B01G141300 chr7D 98.287 1927 27 3 3556 5476 220276838 220278764 0.000000e+00 3371
3 TraesCS7B01G141300 chr7A 94.907 2356 87 18 1163 3509 232585988 232588319 0.000000e+00 3655
4 TraesCS7B01G141300 chr7A 96.815 942 27 3 4538 5476 232589339 232590280 0.000000e+00 1570
5 TraesCS7B01G141300 chr7A 94.055 1026 49 5 3528 4548 232588301 232589319 0.000000e+00 1546
6 TraesCS7B01G141300 chr7A 91.394 1162 44 21 25 1165 232584781 232585907 0.000000e+00 1541
7 TraesCS7B01G141300 chr5B 90.816 98 9 0 3362 3459 457123194 457123291 1.240000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G141300 chr7B 179254215 179259690 5475 True 10113 10113 100.00000 1 5476 1 chr7B.!!$R1 5475
1 TraesCS7B01G141300 chr7D 220273137 220278764 5627 False 4320 5269 96.22600 25 5476 2 chr7D.!!$F1 5451
2 TraesCS7B01G141300 chr7A 232584781 232590280 5499 False 2078 3655 94.29275 25 5476 4 chr7A.!!$F1 5451

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 334 0.039764 GCTCCCTTTTAACCCCTGCT 59.960 55.0 0.00 0.0 0.00 4.24 F
464 483 1.964552 CTAATCCTTGGCTGCTCCTG 58.035 55.0 0.00 0.0 35.26 3.86 F
1313 1425 0.037697 TGAAGCCGTGTCGTAGCAAT 60.038 50.0 0.00 0.0 0.00 3.56 F
2146 2273 1.244816 GGAGTTGTAACCAAGGCCAC 58.755 55.0 5.01 0.0 0.00 5.01 F
2869 3000 0.457853 TGACGCAGCTTCCGTATCAC 60.458 55.0 8.97 0.0 39.30 3.06 F
3043 3174 0.761187 GAGCAGCCCATCACAGGATA 59.239 55.0 0.00 0.0 30.87 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1294 1406 0.037697 ATTGCTACGACACGGCTTCA 60.038 50.000 0.00 0.0 0.00 3.02 R
2458 2586 0.969894 GGCAGAGTGTGTACCTGACT 59.030 55.000 0.00 0.0 33.14 3.41 R
2853 2984 0.179137 TCAGTGATACGGAAGCTGCG 60.179 55.000 0.00 0.0 37.19 5.18 R
3676 4053 1.004610 CAAGTGATGACAATAGCGCCG 60.005 52.381 2.29 0.0 0.00 6.46 R
3919 4296 2.664436 GCGTGCGAACCCACTGTAC 61.664 63.158 0.00 0.0 33.60 2.90 R
4952 5363 1.079127 CTGGAGTACCGCCACAAGG 60.079 63.158 1.11 0.0 39.42 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.046910 ACGAAAGGCAATGATTACTGTTG 57.953 39.130 0.00 0.00 0.00 3.33
23 24 4.518970 ACGAAAGGCAATGATTACTGTTGT 59.481 37.500 0.00 0.00 0.00 3.32
191 200 0.677731 CGCCATGACATCCCACTGTT 60.678 55.000 0.00 0.00 0.00 3.16
281 292 1.260544 GCCACTGCTCCTCCATTTTT 58.739 50.000 0.00 0.00 33.53 1.94
282 293 1.203287 GCCACTGCTCCTCCATTTTTC 59.797 52.381 0.00 0.00 33.53 2.29
287 300 4.155644 CACTGCTCCTCCATTTTTCTCTTC 59.844 45.833 0.00 0.00 0.00 2.87
289 302 4.990526 TGCTCCTCCATTTTTCTCTTCTT 58.009 39.130 0.00 0.00 0.00 2.52
296 309 8.001292 TCCTCCATTTTTCTCTTCTTTTCTTCT 58.999 33.333 0.00 0.00 0.00 2.85
316 329 0.616891 TCCTCGCTCCCTTTTAACCC 59.383 55.000 0.00 0.00 0.00 4.11
317 330 0.393944 CCTCGCTCCCTTTTAACCCC 60.394 60.000 0.00 0.00 0.00 4.95
318 331 0.618981 CTCGCTCCCTTTTAACCCCT 59.381 55.000 0.00 0.00 0.00 4.79
319 332 0.326927 TCGCTCCCTTTTAACCCCTG 59.673 55.000 0.00 0.00 0.00 4.45
320 333 1.313091 CGCTCCCTTTTAACCCCTGC 61.313 60.000 0.00 0.00 0.00 4.85
321 334 0.039764 GCTCCCTTTTAACCCCTGCT 59.960 55.000 0.00 0.00 0.00 4.24
367 386 2.777972 CCGCACCGTATCTTCCCGA 61.778 63.158 0.00 0.00 0.00 5.14
420 439 4.459089 GCCTCCGTGGGTCAGCTC 62.459 72.222 0.00 0.00 36.00 4.09
421 440 2.997315 CCTCCGTGGGTCAGCTCA 60.997 66.667 0.00 0.00 0.00 4.26
424 443 3.314331 CCGTGGGTCAGCTCACCT 61.314 66.667 6.77 0.00 43.01 4.00
464 483 1.964552 CTAATCCTTGGCTGCTCCTG 58.035 55.000 0.00 0.00 35.26 3.86
482 501 5.867716 GCTCCTGTCGTTGAGTCTTAAATAA 59.132 40.000 0.00 0.00 0.00 1.40
677 700 6.241645 CCTTCCCTTTGTCTTCTCTGTTTAT 58.758 40.000 0.00 0.00 0.00 1.40
765 788 4.002316 GCTGATCAATCATAGCCTCCTTC 58.998 47.826 0.00 0.00 36.02 3.46
777 803 3.247162 AGCCTCCTTCTCTTCTGTTTCT 58.753 45.455 0.00 0.00 0.00 2.52
821 847 4.399618 AGCAGTAACTCATGATGTACGAGT 59.600 41.667 0.00 0.00 41.70 4.18
1076 1102 3.581755 GAAGGTTAGTATGCACACGACA 58.418 45.455 6.94 0.00 0.00 4.35
1092 1120 4.754618 ACACGACACAATCTTTTCAGCATA 59.245 37.500 0.00 0.00 0.00 3.14
1097 1125 6.347644 CGACACAATCTTTTCAGCATAGTGAA 60.348 38.462 0.00 0.00 34.56 3.18
1173 1284 7.254353 GCGAGATGATAACTGGTAAAAAGGTAC 60.254 40.741 0.00 0.00 0.00 3.34
1240 1351 7.324935 TCTAGCCGTTTTGATCAATACTTACA 58.675 34.615 21.67 8.12 0.00 2.41
1313 1425 0.037697 TGAAGCCGTGTCGTAGCAAT 60.038 50.000 0.00 0.00 0.00 3.56
1396 1508 1.273048 GCACATCATTTTCCAGCACCA 59.727 47.619 0.00 0.00 0.00 4.17
1640 1767 3.132925 GTTGCAAGCACACATGGAAATT 58.867 40.909 0.00 0.00 0.00 1.82
1717 1844 4.712337 TCCCCTTTTGTTTTTGCTCTTACA 59.288 37.500 0.00 0.00 0.00 2.41
1722 1849 6.421801 CCTTTTGTTTTTGCTCTTACAGATGG 59.578 38.462 0.00 0.00 0.00 3.51
1810 1937 8.018677 TCTTGCTAAGTTATTTTTCTCTGTCG 57.981 34.615 0.00 0.00 0.00 4.35
1915 2042 3.709653 GACCACCCCATGATTACTACAGA 59.290 47.826 0.00 0.00 0.00 3.41
1921 2048 5.487488 ACCCCATGATTACTACAGAAGAACA 59.513 40.000 0.00 0.00 0.00 3.18
2087 2214 9.592196 TCTTACCTTTTCTCACTACCTTAAGTA 57.408 33.333 0.97 0.00 0.00 2.24
2146 2273 1.244816 GGAGTTGTAACCAAGGCCAC 58.755 55.000 5.01 0.00 0.00 5.01
2170 2297 5.698089 CGAGCCATGATTATGCTCTCTTTTA 59.302 40.000 15.85 0.00 36.33 1.52
2458 2586 1.480954 GCATCTCCCCTCGTGTTTCTA 59.519 52.381 0.00 0.00 0.00 2.10
2526 2654 7.335924 TGTTGGGACTTTATACTGCATAGAAAC 59.664 37.037 0.00 0.00 0.00 2.78
2779 2908 7.198390 CCAAACTCATGCCAATGTTATCTAAG 58.802 38.462 0.00 0.00 35.15 2.18
2846 2977 3.181443 ACGAAACCTCCCAAAGTGAGATT 60.181 43.478 0.00 0.00 31.26 2.40
2853 2984 5.104735 ACCTCCCAAAGTGAGATTATCTGAC 60.105 44.000 3.63 3.63 30.42 3.51
2861 2992 3.489047 GTGAGATTATCTGACGCAGCTTC 59.511 47.826 0.00 0.00 0.00 3.86
2863 2994 1.789464 GATTATCTGACGCAGCTTCCG 59.211 52.381 0.00 2.21 0.00 4.30
2869 3000 0.457853 TGACGCAGCTTCCGTATCAC 60.458 55.000 8.97 0.00 39.30 3.06
3043 3174 0.761187 GAGCAGCCCATCACAGGATA 59.239 55.000 0.00 0.00 30.87 2.59
3383 3515 5.643379 TGATAAAGCGGCTTGAGAAAATT 57.357 34.783 17.16 0.00 0.00 1.82
3488 3620 7.446931 TCAACATTGATAACAACTCTTGCCTTA 59.553 33.333 0.00 0.00 38.90 2.69
3489 3621 7.145932 ACATTGATAACAACTCTTGCCTTAC 57.854 36.000 0.00 0.00 38.90 2.34
3490 3622 6.714810 ACATTGATAACAACTCTTGCCTTACA 59.285 34.615 0.00 0.00 38.90 2.41
3491 3623 7.394359 ACATTGATAACAACTCTTGCCTTACAT 59.606 33.333 0.00 0.00 38.90 2.29
3492 3624 8.892723 CATTGATAACAACTCTTGCCTTACATA 58.107 33.333 0.00 0.00 38.90 2.29
3493 3625 9.632638 ATTGATAACAACTCTTGCCTTACATAT 57.367 29.630 0.00 0.00 38.90 1.78
3494 3626 8.437360 TGATAACAACTCTTGCCTTACATATG 57.563 34.615 0.00 0.00 0.00 1.78
3495 3627 8.046708 TGATAACAACTCTTGCCTTACATATGT 58.953 33.333 13.93 13.93 0.00 2.29
3496 3628 8.807948 ATAACAACTCTTGCCTTACATATGTT 57.192 30.769 14.77 0.00 0.00 2.71
3497 3629 6.743575 ACAACTCTTGCCTTACATATGTTC 57.256 37.500 14.77 2.25 0.00 3.18
3498 3630 6.237901 ACAACTCTTGCCTTACATATGTTCA 58.762 36.000 14.77 4.84 0.00 3.18
3499 3631 6.886459 ACAACTCTTGCCTTACATATGTTCAT 59.114 34.615 14.77 0.00 0.00 2.57
3500 3632 6.932356 ACTCTTGCCTTACATATGTTCATG 57.068 37.500 14.77 9.38 0.00 3.07
3501 3633 6.418101 ACTCTTGCCTTACATATGTTCATGT 58.582 36.000 14.77 0.00 41.88 3.21
3502 3634 6.886459 ACTCTTGCCTTACATATGTTCATGTT 59.114 34.615 14.77 0.00 39.77 2.71
3503 3635 8.046708 ACTCTTGCCTTACATATGTTCATGTTA 58.953 33.333 14.77 0.00 39.77 2.41
3504 3636 8.800370 TCTTGCCTTACATATGTTCATGTTAA 57.200 30.769 14.77 0.00 39.77 2.01
3505 3637 8.673711 TCTTGCCTTACATATGTTCATGTTAAC 58.326 33.333 14.77 0.00 39.77 2.01
3506 3638 7.328277 TGCCTTACATATGTTCATGTTAACC 57.672 36.000 14.77 0.00 39.77 2.85
3507 3639 7.116075 TGCCTTACATATGTTCATGTTAACCT 58.884 34.615 14.77 0.00 39.77 3.50
3508 3640 7.282224 TGCCTTACATATGTTCATGTTAACCTC 59.718 37.037 14.77 0.00 39.77 3.85
3509 3641 7.499232 GCCTTACATATGTTCATGTTAACCTCT 59.501 37.037 14.77 0.00 39.77 3.69
3510 3642 9.396022 CCTTACATATGTTCATGTTAACCTCTT 57.604 33.333 14.77 0.00 39.77 2.85
3552 3684 6.642707 ATGTTCATGTTAACCTCGGAAAAA 57.357 33.333 2.48 0.00 0.00 1.94
3680 4057 6.388259 ACAATTATCAAAATTTGAACGGCG 57.612 33.333 12.75 4.80 43.95 6.46
3919 4296 1.004927 GCGCTAACAAGCTAATGGTCG 60.005 52.381 0.00 0.00 0.00 4.79
4658 5067 5.163513 CACGCTTTGCTTGGAAGAAATATT 58.836 37.500 0.00 0.00 0.00 1.28
4728 5138 9.696917 GAACATTCAGAAAACATCCAGTTAAAT 57.303 29.630 0.00 0.00 40.26 1.40
4952 5363 4.629200 CCTTGAGTTCATCTGCTTGAGTAC 59.371 45.833 0.00 0.00 0.00 2.73
5130 5541 3.028850 AGCCACCAATTTCATGATCTGG 58.971 45.455 13.87 13.87 0.00 3.86
5430 5841 1.142748 GCTGTAGCTGATGAGGCGT 59.857 57.895 0.00 0.00 38.21 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.518970 ACAACAGTAATCATTGCCTTTCGT 59.481 37.500 0.00 0.00 0.00 3.85
1 2 5.046910 ACAACAGTAATCATTGCCTTTCG 57.953 39.130 0.00 0.00 0.00 3.46
2 3 7.713764 AAAACAACAGTAATCATTGCCTTTC 57.286 32.000 0.00 0.00 0.00 2.62
3 4 7.986889 AGAAAAACAACAGTAATCATTGCCTTT 59.013 29.630 0.00 0.00 0.00 3.11
4 5 7.500141 AGAAAAACAACAGTAATCATTGCCTT 58.500 30.769 0.00 0.00 0.00 4.35
5 6 7.054491 AGAAAAACAACAGTAATCATTGCCT 57.946 32.000 0.00 0.00 0.00 4.75
6 7 8.810652 TTAGAAAAACAACAGTAATCATTGCC 57.189 30.769 0.00 0.00 0.00 4.52
87 96 0.321671 CAAGATGGACAGTGACCGGT 59.678 55.000 6.92 6.92 0.00 5.28
281 292 4.282195 AGCGAGGAAGAAGAAAAGAAGAGA 59.718 41.667 0.00 0.00 0.00 3.10
282 293 4.565022 AGCGAGGAAGAAGAAAAGAAGAG 58.435 43.478 0.00 0.00 0.00 2.85
287 300 2.027653 AGGGAGCGAGGAAGAAGAAAAG 60.028 50.000 0.00 0.00 0.00 2.27
289 302 1.645710 AGGGAGCGAGGAAGAAGAAA 58.354 50.000 0.00 0.00 0.00 2.52
296 309 1.003928 GGGTTAAAAGGGAGCGAGGAA 59.996 52.381 0.00 0.00 0.00 3.36
316 329 1.328279 AAACTCCCGGAAAAAGCAGG 58.672 50.000 0.73 0.00 0.00 4.85
317 330 3.305131 GGTAAAACTCCCGGAAAAAGCAG 60.305 47.826 0.73 0.00 0.00 4.24
318 331 2.624364 GGTAAAACTCCCGGAAAAAGCA 59.376 45.455 0.73 0.00 0.00 3.91
319 332 2.624364 TGGTAAAACTCCCGGAAAAAGC 59.376 45.455 0.73 0.00 0.00 3.51
320 333 3.005050 GGTGGTAAAACTCCCGGAAAAAG 59.995 47.826 0.73 0.00 0.00 2.27
321 334 2.957680 GGTGGTAAAACTCCCGGAAAAA 59.042 45.455 0.73 0.00 0.00 1.94
367 386 4.073200 GCAAATGCGGCAGCCCTT 62.073 61.111 9.25 0.00 44.33 3.95
418 437 0.896019 ACGAGGTGAGGTGAGGTGAG 60.896 60.000 0.00 0.00 0.00 3.51
419 438 0.894184 GACGAGGTGAGGTGAGGTGA 60.894 60.000 0.00 0.00 0.00 4.02
420 439 1.587054 GACGAGGTGAGGTGAGGTG 59.413 63.158 0.00 0.00 0.00 4.00
421 440 1.606889 GGACGAGGTGAGGTGAGGT 60.607 63.158 0.00 0.00 0.00 3.85
424 443 0.679505 CAAAGGACGAGGTGAGGTGA 59.320 55.000 0.00 0.00 0.00 4.02
464 483 7.760340 AGGAGATGTTATTTAAGACTCAACGAC 59.240 37.037 0.00 0.00 0.00 4.34
482 501 2.791655 CCATATGCATGCAGGAGATGT 58.208 47.619 26.69 9.79 0.00 3.06
765 788 4.260170 AGCTGCCAATAGAAACAGAAGAG 58.740 43.478 0.00 0.00 31.67 2.85
777 803 4.503910 CTGTGTACTACAAGCTGCCAATA 58.496 43.478 0.00 0.00 39.20 1.90
821 847 4.693566 CACTCGGCTAATGAACTTACCAAA 59.306 41.667 0.00 0.00 0.00 3.28
904 930 3.127533 ATCGAGGCCAAAGCACGC 61.128 61.111 5.01 0.00 42.56 5.34
1076 1102 6.882610 TGTTCACTATGCTGAAAAGATTGT 57.117 33.333 0.00 0.00 31.90 2.71
1097 1125 7.516198 ACTGCTAGAAGAACAAATTTGATGT 57.484 32.000 24.64 8.78 0.00 3.06
1173 1284 3.065786 TGCTCTGTCAAAACTGCTCTTTG 59.934 43.478 0.00 0.00 35.51 2.77
1294 1406 0.037697 ATTGCTACGACACGGCTTCA 60.038 50.000 0.00 0.00 0.00 3.02
1313 1425 2.978156 AGAAGGGGAAAACATCAGCA 57.022 45.000 0.00 0.00 0.00 4.41
1396 1508 7.394359 ACTGCAAGAACATTAGGAAACATACAT 59.606 33.333 0.00 0.00 37.43 2.29
1760 1887 5.234757 ACGTAGAATCTGAAGAGTAGTAGCG 59.765 44.000 0.00 0.00 0.00 4.26
1810 1937 1.733912 TCTGCACGATCATGAAAGCAC 59.266 47.619 0.00 0.00 0.00 4.40
1915 2042 6.863126 CGACATAGCCTTTTCATTTTGTTCTT 59.137 34.615 0.00 0.00 0.00 2.52
1921 2048 5.476945 ACCTTCGACATAGCCTTTTCATTTT 59.523 36.000 0.00 0.00 0.00 1.82
2146 2273 3.316071 AGAGAGCATAATCATGGCTCG 57.684 47.619 13.15 0.00 38.88 5.03
2170 2297 4.899898 AGATAGGCAATTTAAAGGGGGT 57.100 40.909 0.00 0.00 0.00 4.95
2282 2410 5.076873 ACTTGGTTAAAAGGCTGCATAGAA 58.923 37.500 0.50 0.00 0.00 2.10
2283 2411 4.662278 ACTTGGTTAAAAGGCTGCATAGA 58.338 39.130 0.50 0.00 0.00 1.98
2290 2418 7.539034 ACAATCATAACTTGGTTAAAAGGCT 57.461 32.000 0.00 0.00 31.56 4.58
2458 2586 0.969894 GGCAGAGTGTGTACCTGACT 59.030 55.000 0.00 0.00 33.14 3.41
2526 2654 2.946329 AGTACACGGTCTGCTATCTGAG 59.054 50.000 0.00 0.00 0.00 3.35
2823 2954 2.967201 TCTCACTTTGGGAGGTTTCGTA 59.033 45.455 0.00 0.00 33.18 3.43
2825 2956 2.543777 TCTCACTTTGGGAGGTTTCG 57.456 50.000 0.00 0.00 33.18 3.46
2846 2977 1.385528 TACGGAAGCTGCGTCAGATA 58.614 50.000 20.36 7.93 41.66 1.98
2853 2984 0.179137 TCAGTGATACGGAAGCTGCG 60.179 55.000 0.00 0.00 37.19 5.18
2861 2992 5.043903 CCTGTGAATACTTCAGTGATACGG 58.956 45.833 0.00 0.00 41.01 4.02
2863 2994 6.043411 GTCCCTGTGAATACTTCAGTGATAC 58.957 44.000 0.00 0.00 41.01 2.24
2869 3000 3.265791 GCAGTCCCTGTGAATACTTCAG 58.734 50.000 0.00 0.00 41.01 3.02
3021 3152 3.963687 CTGTGATGGGCTGCTCGCA 62.964 63.158 0.00 1.41 41.67 5.10
3043 3174 5.308825 AGTTGACAAAGTCTCGGAATCAAT 58.691 37.500 0.00 0.00 33.15 2.57
3177 3308 7.554118 CCACTGTACTGGTCATTATTCTCATTT 59.446 37.037 4.66 0.00 0.00 2.32
3383 3515 1.702401 TGTGCCATCTTTGTAGGGTCA 59.298 47.619 0.00 0.00 0.00 4.02
3483 3615 7.499232 AGAGGTTAACATGAACATATGTAAGGC 59.501 37.037 9.21 0.15 40.24 4.35
3514 3646 3.157881 TGAACATATGTCCCCGCAAAAA 58.842 40.909 9.23 0.00 0.00 1.94
3515 3647 2.796557 TGAACATATGTCCCCGCAAAA 58.203 42.857 9.23 0.00 0.00 2.44
3516 3648 2.498644 TGAACATATGTCCCCGCAAA 57.501 45.000 9.23 0.00 0.00 3.68
3517 3649 2.296792 CATGAACATATGTCCCCGCAA 58.703 47.619 9.23 0.00 0.00 4.85
3518 3650 1.211703 ACATGAACATATGTCCCCGCA 59.788 47.619 9.23 3.60 36.60 5.69
3519 3651 1.967319 ACATGAACATATGTCCCCGC 58.033 50.000 9.23 0.00 36.60 6.13
3520 3652 4.274950 GGTTAACATGAACATATGTCCCCG 59.725 45.833 9.23 1.48 40.24 5.73
3521 3653 5.445964 AGGTTAACATGAACATATGTCCCC 58.554 41.667 9.23 2.56 40.24 4.81
3522 3654 5.236478 CGAGGTTAACATGAACATATGTCCC 59.764 44.000 9.23 5.10 40.24 4.46
3523 3655 5.236478 CCGAGGTTAACATGAACATATGTCC 59.764 44.000 9.23 0.00 40.24 4.02
3524 3656 6.046593 TCCGAGGTTAACATGAACATATGTC 58.953 40.000 9.23 3.74 40.24 3.06
3552 3684 5.938125 GCCATTACGGGTTAGACATGAATAT 59.062 40.000 0.00 0.00 34.06 1.28
3676 4053 1.004610 CAAGTGATGACAATAGCGCCG 60.005 52.381 2.29 0.00 0.00 6.46
3680 4057 8.615211 TCAAATATGACAAGTGATGACAATAGC 58.385 33.333 0.00 0.00 37.26 2.97
3919 4296 2.664436 GCGTGCGAACCCACTGTAC 61.664 63.158 0.00 0.00 33.60 2.90
4253 4631 5.319453 AGAAAAATGATCTGCTTCCTGACA 58.681 37.500 0.00 0.00 0.00 3.58
4535 4913 9.198837 CTAATTACACAGTTACACACACACATA 57.801 33.333 0.00 0.00 0.00 2.29
4536 4914 6.935741 AATTACACAGTTACACACACACAT 57.064 33.333 0.00 0.00 0.00 3.21
4658 5067 8.511321 CAACAAGTGGCTTGAGTATGTATTTTA 58.489 33.333 14.81 0.00 43.42 1.52
4728 5138 5.172934 GCATTGAGAATCCAAGCATTTTGA 58.827 37.500 0.00 0.00 0.00 2.69
4812 5222 4.009675 TCAGTTCCCATGTAGCATGTTTC 58.990 43.478 8.11 0.00 0.00 2.78
4952 5363 1.079127 CTGGAGTACCGCCACAAGG 60.079 63.158 1.11 0.00 39.42 3.61
5274 5685 4.435436 CGGCTGCGTCCTACTGCA 62.435 66.667 0.00 0.00 39.13 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.