Multiple sequence alignment - TraesCS7B01G141000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7B01G141000
chr7B
100.000
5159
0
0
1
5159
179245857
179251015
0.000000e+00
9527
1
TraesCS7B01G141000
chr7B
92.455
729
51
4
1
727
679104333
679105059
0.000000e+00
1038
2
TraesCS7B01G141000
chr7B
92.632
190
14
0
3776
3965
443646512
443646323
1.830000e-69
274
3
TraesCS7B01G141000
chr7A
92.001
3863
176
62
732
4505
232597959
232594141
0.000000e+00
5299
4
TraesCS7B01G141000
chr7A
95.807
644
22
2
4516
5159
232594052
232593414
0.000000e+00
1035
5
TraesCS7B01G141000
chr7D
97.526
1859
42
2
2650
4505
220288531
220286674
0.000000e+00
3175
6
TraesCS7B01G141000
chr7D
92.269
1966
77
28
732
2654
220290498
220288565
0.000000e+00
2719
7
TraesCS7B01G141000
chr7D
96.118
644
18
4
4516
5159
220286592
220285956
0.000000e+00
1044
8
TraesCS7B01G141000
chr2D
93.631
738
43
4
1
736
520039429
520040164
0.000000e+00
1099
9
TraesCS7B01G141000
chr4B
92.828
739
46
7
1
736
377799548
377798814
0.000000e+00
1064
10
TraesCS7B01G141000
chr4B
90.968
310
28
0
3770
4079
605162688
605162997
7.990000e-113
418
11
TraesCS7B01G141000
chr1B
93.122
727
48
2
1
727
639087450
639086726
0.000000e+00
1064
12
TraesCS7B01G141000
chr1B
90.691
376
26
8
2121
2490
608360728
608361100
4.640000e-135
492
13
TraesCS7B01G141000
chr1B
96.053
76
3
0
2038
2113
608360611
608360686
1.950000e-24
124
14
TraesCS7B01G141000
chr2B
93.004
729
47
4
1
727
406114021
406114747
0.000000e+00
1061
15
TraesCS7B01G141000
chr5D
92.740
730
47
5
1
728
30811468
30812193
0.000000e+00
1050
16
TraesCS7B01G141000
chr3B
92.141
738
51
7
1
735
421109950
421110683
0.000000e+00
1035
17
TraesCS7B01G141000
chr3B
90.957
376
25
8
2121
2490
12027114
12027486
9.980000e-137
497
18
TraesCS7B01G141000
chr3B
96.053
76
3
0
2038
2113
12026997
12027072
1.950000e-24
124
19
TraesCS7B01G141000
chr5B
92.318
729
52
4
1
727
710360703
710361429
0.000000e+00
1033
20
TraesCS7B01G141000
chr5B
90.576
382
27
8
2121
2496
6849496
6849118
9.980000e-137
497
21
TraesCS7B01G141000
chr5B
94.737
76
4
0
2038
2113
6849613
6849538
9.070000e-23
119
22
TraesCS7B01G141000
chr6B
91.973
735
55
4
2
734
652706840
652706108
0.000000e+00
1027
23
TraesCS7B01G141000
chr6D
90.929
463
29
10
2041
2496
226683360
226682904
1.230000e-170
610
24
TraesCS7B01G141000
chr6A
91.223
376
24
8
2121
2490
607431977
607432349
2.140000e-138
503
25
TraesCS7B01G141000
chr6A
90.314
382
26
9
2121
2496
61396382
61396006
1.670000e-134
490
26
TraesCS7B01G141000
chr6A
89.137
313
34
0
3770
4082
449815563
449815875
1.740000e-104
390
27
TraesCS7B01G141000
chr6A
86.581
313
35
5
3770
4082
22031165
22030860
6.400000e-89
339
28
TraesCS7B01G141000
chr6A
96.053
76
3
0
2038
2113
607431860
607431935
1.950000e-24
124
29
TraesCS7B01G141000
chr5A
91.223
376
24
8
2121
2490
324949128
324949500
2.140000e-138
503
30
TraesCS7B01G141000
chr5A
96.053
76
3
0
2038
2113
324949011
324949086
1.950000e-24
124
31
TraesCS7B01G141000
chr4A
91.964
224
17
1
3769
3992
564740352
564740574
3.880000e-81
313
32
TraesCS7B01G141000
chrUn
94.382
89
5
0
2408
2496
434647769
434647681
2.510000e-28
137
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7B01G141000
chr7B
179245857
179251015
5158
False
9527.000000
9527
100.000000
1
5159
1
chr7B.!!$F1
5158
1
TraesCS7B01G141000
chr7B
679104333
679105059
726
False
1038.000000
1038
92.455000
1
727
1
chr7B.!!$F2
726
2
TraesCS7B01G141000
chr7A
232593414
232597959
4545
True
3167.000000
5299
93.904000
732
5159
2
chr7A.!!$R1
4427
3
TraesCS7B01G141000
chr7D
220285956
220290498
4542
True
2312.666667
3175
95.304333
732
5159
3
chr7D.!!$R1
4427
4
TraesCS7B01G141000
chr2D
520039429
520040164
735
False
1099.000000
1099
93.631000
1
736
1
chr2D.!!$F1
735
5
TraesCS7B01G141000
chr4B
377798814
377799548
734
True
1064.000000
1064
92.828000
1
736
1
chr4B.!!$R1
735
6
TraesCS7B01G141000
chr1B
639086726
639087450
724
True
1064.000000
1064
93.122000
1
727
1
chr1B.!!$R1
726
7
TraesCS7B01G141000
chr2B
406114021
406114747
726
False
1061.000000
1061
93.004000
1
727
1
chr2B.!!$F1
726
8
TraesCS7B01G141000
chr5D
30811468
30812193
725
False
1050.000000
1050
92.740000
1
728
1
chr5D.!!$F1
727
9
TraesCS7B01G141000
chr3B
421109950
421110683
733
False
1035.000000
1035
92.141000
1
735
1
chr3B.!!$F1
734
10
TraesCS7B01G141000
chr5B
710360703
710361429
726
False
1033.000000
1033
92.318000
1
727
1
chr5B.!!$F1
726
11
TraesCS7B01G141000
chr6B
652706108
652706840
732
True
1027.000000
1027
91.973000
2
734
1
chr6B.!!$R1
732
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
865
876
0.315869
CTCGCACGCGACAAAAGTTT
60.316
50.000
15.93
0.0
44.01
2.66
F
1444
1506
0.662619
TACCGTACCAATCGCTACCG
59.337
55.000
0.00
0.0
0.00
4.02
F
1953
2027
0.460987
GGATCAGTGACTCCCTTGCG
60.461
60.000
0.00
0.0
0.00
4.85
F
2061
2135
1.144936
GCTTGAGTCCCGCATAGCT
59.855
57.895
0.00
0.0
0.00
3.32
F
3903
4029
1.068541
GCAAGTTACAAAAGGCTCCGG
60.069
52.381
0.00
0.0
0.00
5.14
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1692
1766
0.459237
CTGCAACTACAGCCTCTCCG
60.459
60.000
0.00
0.00
0.00
4.63
R
2393
2476
0.532115
ATTTTGGAAGCGATGGCACC
59.468
50.000
1.50
5.77
43.41
5.01
R
3107
3233
1.129917
ATCTGACTGGGAGCCATGAG
58.870
55.000
0.00
0.00
30.82
2.90
R
3980
4106
0.536006
AGCGGCTTCAGCTTCTTTGT
60.536
50.000
0.00
0.00
43.24
2.83
R
4824
5032
2.575993
CCAGAGGCTCCAGTGACG
59.424
66.667
11.71
0.00
0.00
4.35
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
25
26
2.009774
GTAGTTGCCATGTCGCTGAAT
58.990
47.619
0.00
0.00
0.00
2.57
103
105
5.540337
CCATGTATGGTCTGGTCTACTGTAT
59.460
44.000
2.66
0.00
43.05
2.29
302
309
1.446907
AAAGAGAGTTGCCATCTGCG
58.553
50.000
0.00
0.00
45.60
5.18
315
322
1.008875
ATCTGCGTACGTGCACACTG
61.009
55.000
18.64
2.84
40.62
3.66
317
324
2.355363
GCGTACGTGCACACTGGA
60.355
61.111
18.64
0.00
34.15
3.86
462
471
1.304217
GTGTGGGAGAGGAGACGGA
60.304
63.158
0.00
0.00
0.00
4.69
509
518
1.301716
CACTAGCCCTTGTGCGTGT
60.302
57.895
0.00
0.00
36.02
4.49
520
529
0.391793
TGTGCGTGTGTGGAAAGTGA
60.392
50.000
0.00
0.00
0.00
3.41
545
554
2.721231
GCAAACTGCTGAACGCCA
59.279
55.556
0.00
0.00
40.96
5.69
579
588
4.347096
CGTGTGGTGAAACGGCTA
57.653
55.556
0.00
0.00
38.12
3.93
623
632
1.152118
ACACCAGGCCAGTCCTACA
60.152
57.895
5.01
0.00
45.52
2.74
644
653
5.375417
CATGGCACTAGAAACATGTCAAA
57.625
39.130
0.00
0.00
36.76
2.69
674
683
3.437795
ACGAACGGACGCGGATCT
61.438
61.111
12.47
0.00
36.70
2.75
766
775
7.387673
TCTTGATAACGATGATGACACACTTTT
59.612
33.333
0.00
0.00
0.00
2.27
778
787
3.011119
ACACACTTTTGCGGTTTGAGTA
58.989
40.909
0.00
0.00
0.00
2.59
783
792
1.144969
TTTGCGGTTTGAGTAGAGCG
58.855
50.000
0.00
0.00
39.54
5.03
786
795
0.388134
GCGGTTTGAGTAGAGCGTCA
60.388
55.000
0.00
0.00
38.84
4.35
865
876
0.315869
CTCGCACGCGACAAAAGTTT
60.316
50.000
15.93
0.00
44.01
2.66
878
889
5.220719
CGACAAAAGTTTAACCCGAGTTTCT
60.221
40.000
0.00
0.00
37.42
2.52
885
896
2.434359
CCCGAGTTTCTCCCGCAC
60.434
66.667
0.00
0.00
0.00
5.34
910
929
2.700897
AGCCAAAGTATGATCCGCTAGT
59.299
45.455
0.00
0.00
0.00
2.57
911
930
3.060602
GCCAAAGTATGATCCGCTAGTC
58.939
50.000
0.00
0.00
0.00
2.59
912
931
3.654414
CCAAAGTATGATCCGCTAGTCC
58.346
50.000
0.00
0.00
0.00
3.85
913
932
3.069586
CCAAAGTATGATCCGCTAGTCCA
59.930
47.826
0.00
0.00
0.00
4.02
914
933
4.262635
CCAAAGTATGATCCGCTAGTCCAT
60.263
45.833
0.00
0.00
0.00
3.41
915
934
5.300752
CAAAGTATGATCCGCTAGTCCATT
58.699
41.667
0.00
0.00
0.00
3.16
916
935
6.455647
CAAAGTATGATCCGCTAGTCCATTA
58.544
40.000
0.00
0.00
0.00
1.90
917
936
5.906113
AGTATGATCCGCTAGTCCATTAG
57.094
43.478
0.00
0.00
0.00
1.73
918
937
3.601443
ATGATCCGCTAGTCCATTAGC
57.399
47.619
0.00
0.00
42.05
3.09
919
938
2.316108
TGATCCGCTAGTCCATTAGCA
58.684
47.619
5.94
0.00
44.98
3.49
921
940
1.480789
TCCGCTAGTCCATTAGCACA
58.519
50.000
5.94
0.00
44.98
4.57
922
941
1.409064
TCCGCTAGTCCATTAGCACAG
59.591
52.381
5.94
0.00
44.98
3.66
933
971
0.685097
TTAGCACAGACAGGTCCACC
59.315
55.000
0.00
0.00
0.00
4.61
1362
1424
2.674033
TCCTCGTCGCTCCGGAAA
60.674
61.111
5.23
0.00
0.00
3.13
1431
1493
3.524606
GCTCTGCCGCCTACCGTA
61.525
66.667
0.00
0.00
34.38
4.02
1442
1504
1.601412
GCCTACCGTACCAATCGCTAC
60.601
57.143
0.00
0.00
0.00
3.58
1444
1506
0.662619
TACCGTACCAATCGCTACCG
59.337
55.000
0.00
0.00
0.00
4.02
1489
1563
2.417933
ACGGCTACTGTACTTCGTACTG
59.582
50.000
8.79
8.79
41.50
2.74
1682
1756
2.303022
AGGCGAAAGAAGAAGATGGTGA
59.697
45.455
0.00
0.00
0.00
4.02
1725
1799
1.139058
GTTGCAGTAGTGGGGATCGAT
59.861
52.381
0.00
0.00
0.00
3.59
1785
1859
2.630158
CTTGATTCAGTCCAGCAGAGG
58.370
52.381
0.00
0.00
0.00
3.69
1953
2027
0.460987
GGATCAGTGACTCCCTTGCG
60.461
60.000
0.00
0.00
0.00
4.85
1989
2063
2.254546
AAGATCGGTTGTTGACTGCA
57.745
45.000
0.00
0.00
34.46
4.41
2031
2105
6.125719
TGATTATGATTCGGTGGATTTGGAA
58.874
36.000
0.00
0.00
0.00
3.53
2061
2135
1.144936
GCTTGAGTCCCGCATAGCT
59.855
57.895
0.00
0.00
0.00
3.32
2096
2170
4.434483
TGCCCTTCTCGAGCAGTA
57.566
55.556
7.81
0.00
31.65
2.74
2115
2189
6.199937
CAGTATGCAAAGGTAAATCAGCTT
57.800
37.500
0.00
0.00
46.92
3.74
2258
2336
8.999431
CCTAGTATTTCTAGAGAGCTACTCAAG
58.001
40.741
13.42
1.44
46.53
3.02
2322
2400
7.948034
TTTTTATTGGATAACACTAGTGGGG
57.052
36.000
26.12
2.30
34.19
4.96
2323
2401
5.640158
TTATTGGATAACACTAGTGGGGG
57.360
43.478
26.12
1.91
34.19
5.40
2343
2421
5.998363
GGGGGCTACTATGCTTATATAATGC
59.002
44.000
0.00
3.26
0.00
3.56
2393
2476
4.937696
TTGTGTTGATGGCACTATTACG
57.062
40.909
0.00
0.00
37.70
3.18
2410
2493
2.331893
CGGTGCCATCGCTTCCAAA
61.332
57.895
0.00
0.00
35.36
3.28
2490
2576
4.627035
TCGAACAGCATGATAGTTGTGAAG
59.373
41.667
0.00
0.00
39.69
3.02
2597
2684
3.582647
TGTTTACCTGAGCCAGAGAATGA
59.417
43.478
4.00
0.00
32.44
2.57
2612
2700
6.036953
CCAGAGAATGATTTGTCTGTTAGAGC
59.963
42.308
13.94
0.00
46.60
4.09
2631
2719
9.004717
GTTAGAGCTATTCCCCTTATGAAATTC
57.995
37.037
0.00
0.00
0.00
2.17
2706
2832
8.970859
ATTATGAACCTCTAAAGGATTCACTG
57.029
34.615
0.00
0.00
46.67
3.66
2958
3084
8.754096
CATTTGATTGAAGACGATAAGAGAGAG
58.246
37.037
0.00
0.00
0.00
3.20
3107
3233
1.153549
GTGCGGTGGTCTCCAGATC
60.154
63.158
0.00
0.00
32.34
2.75
3330
3456
2.821969
TGAAATCAGAAGGAAGCTTGCC
59.178
45.455
15.04
10.33
0.00
4.52
3342
3468
4.080129
AGGAAGCTTGCCTCATCAATCTTA
60.080
41.667
15.04
0.00
33.95
2.10
3354
3480
6.151648
CCTCATCAATCTTAAAGTCAAGGCAA
59.848
38.462
0.00
0.00
0.00
4.52
3370
3496
5.885912
TCAAGGCAAGATAGAATTGGGTTAC
59.114
40.000
0.00
0.00
0.00
2.50
3507
3633
8.947115
GCTGATAAAGAACATTGGGTATATACC
58.053
37.037
21.88
21.88
45.71
2.73
3814
3940
9.621239
ATCTGGAGGTTATAGAAAAGGATATCA
57.379
33.333
4.83
0.00
0.00
2.15
3879
4005
3.137533
GCTCAAAGAACAAGAGTCAGCT
58.862
45.455
0.00
0.00
0.00
4.24
3903
4029
1.068541
GCAAGTTACAAAAGGCTCCGG
60.069
52.381
0.00
0.00
0.00
5.14
3960
4086
1.400242
GCAACTGAAACAGATGACGGC
60.400
52.381
11.94
0.00
36.57
5.68
3980
4106
3.321111
GGCGAGGAAGTGGAGATATTACA
59.679
47.826
0.00
0.00
0.00
2.41
3999
4125
0.536006
ACAAAGAAGCTGAAGCCGCT
60.536
50.000
0.00
0.00
43.38
5.52
4044
4170
6.778069
TCAAAACATTGTATAACCTCCAACCA
59.222
34.615
0.00
0.00
0.00
3.67
4130
4256
1.471119
CACTTGGCAGAGATGGCATT
58.529
50.000
0.00
0.00
43.87
3.56
4237
4363
0.684805
CGTAGCAGAACCCTCCTCCT
60.685
60.000
0.00
0.00
0.00
3.69
4249
4375
0.668706
CTCCTCCTGGCGAATATGCG
60.669
60.000
0.00
0.00
35.06
4.73
4257
4383
1.137513
GGCGAATATGCGTACCTCAC
58.862
55.000
4.71
0.00
35.06
3.51
4332
4461
5.554437
TGAGTGTATACCACCTGTTTTGA
57.446
39.130
0.00
0.00
45.74
2.69
4346
4475
6.708054
CACCTGTTTTGAATACTCTGAACTCT
59.292
38.462
0.00
0.00
0.00
3.24
4422
4551
5.021033
TGTTGTGCTGGTTTTTGATTGAT
57.979
34.783
0.00
0.00
0.00
2.57
4423
4552
6.154203
TGTTGTGCTGGTTTTTGATTGATA
57.846
33.333
0.00
0.00
0.00
2.15
4446
4576
0.456221
AGCGACGGGTTATCAGTCAG
59.544
55.000
0.00
0.00
34.80
3.51
4465
4595
9.551734
TCAGTCAGAATGTAATCAGAATAATGG
57.448
33.333
0.00
0.00
37.40
3.16
4466
4596
8.781196
CAGTCAGAATGTAATCAGAATAATGGG
58.219
37.037
0.00
0.00
37.40
4.00
4472
4602
9.082313
GAATGTAATCAGAATAATGGGTCCATT
57.918
33.333
17.97
17.97
46.85
3.16
4505
4635
3.632643
TCTGCTTTGCCATCACATCTA
57.367
42.857
0.00
0.00
0.00
1.98
4507
4637
3.198417
TCTGCTTTGCCATCACATCTAGA
59.802
43.478
0.00
0.00
0.00
2.43
4508
4638
3.273434
TGCTTTGCCATCACATCTAGAC
58.727
45.455
0.00
0.00
0.00
2.59
4509
4639
3.054875
TGCTTTGCCATCACATCTAGACT
60.055
43.478
0.00
0.00
0.00
3.24
4510
4640
3.311871
GCTTTGCCATCACATCTAGACTG
59.688
47.826
0.00
0.00
0.00
3.51
4511
4641
3.548745
TTGCCATCACATCTAGACTGG
57.451
47.619
0.00
0.00
0.00
4.00
4512
4642
2.470990
TGCCATCACATCTAGACTGGT
58.529
47.619
0.00
0.00
0.00
4.00
4541
4749
2.332063
AGACTGGTTTCTGGTGTGTG
57.668
50.000
0.00
0.00
0.00
3.82
4607
4815
7.700322
AATGCGATCTTGTGTAATGTACTAG
57.300
36.000
0.00
0.00
0.00
2.57
4608
4816
6.203808
TGCGATCTTGTGTAATGTACTAGT
57.796
37.500
0.00
0.00
0.00
2.57
4609
4817
7.324354
TGCGATCTTGTGTAATGTACTAGTA
57.676
36.000
0.00
0.00
0.00
1.82
4726
4934
5.238650
GCCTTTCTGCTTGTTCTACTTGTAA
59.761
40.000
0.00
0.00
0.00
2.41
4922
5130
0.610687
GTCAGAGACCCAGGTCCTTG
59.389
60.000
13.27
11.64
45.59
3.61
4952
5160
7.500892
TCTCACTCTAATGATCCACTCTCTTAC
59.499
40.741
0.00
0.00
0.00
2.34
4966
5174
4.193090
CTCTCTTACTCCTCTCGTTGCTA
58.807
47.826
0.00
0.00
0.00
3.49
5006
5214
7.077605
CGTTCTTGTTTCTTCTTGATAATGCA
58.922
34.615
0.00
0.00
0.00
3.96
5035
5243
5.530543
TGTTGAAAGTGATAGCAATGTGACA
59.469
36.000
0.00
0.00
0.00
3.58
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
6
7
2.401583
ATTCAGCGACATGGCAACTA
57.598
45.000
0.00
0.00
34.64
2.24
25
26
0.671163
GTCCGACATGGCAACCGTAA
60.671
55.000
0.00
0.00
37.80
3.18
103
105
9.748708
CTCCTAAAGTTTTGAAATCATGACAAA
57.251
29.630
0.00
1.31
0.00
2.83
133
135
2.094854
ACTGCCTAGTGTTACTACGTGC
60.095
50.000
0.00
0.00
35.34
5.34
137
139
5.415077
TCTCTCAACTGCCTAGTGTTACTAC
59.585
44.000
0.00
0.00
37.19
2.73
302
309
0.249322
ACTGTCCAGTGTGCACGTAC
60.249
55.000
13.13
5.72
40.75
3.67
315
322
0.396811
AGGGTACACAGCAACTGTCC
59.603
55.000
0.00
0.00
43.43
4.02
317
324
0.535102
GCAGGGTACACAGCAACTGT
60.535
55.000
7.75
0.00
46.51
3.55
476
485
1.129251
CTAGTGTGTGAGCATTTGCCG
59.871
52.381
0.00
0.00
43.38
5.69
486
495
0.250295
GCACAAGGGCTAGTGTGTGA
60.250
55.000
16.39
0.00
45.60
3.58
509
518
0.462937
CCCACACGTCACTTTCCACA
60.463
55.000
0.00
0.00
0.00
4.17
520
529
2.124320
AGCAGTTTGCCCACACGT
60.124
55.556
0.00
0.00
46.52
4.49
545
554
3.971702
GGGAAGGGCTGGTGTGCT
61.972
66.667
0.00
0.00
0.00
4.40
558
567
4.128139
CGTTTCACCACACGGGAA
57.872
55.556
0.00
0.00
41.15
3.97
578
587
1.121378
TTTATCCGGTCGCCCACATA
58.879
50.000
0.00
0.00
0.00
2.29
579
588
0.463116
GTTTATCCGGTCGCCCACAT
60.463
55.000
0.00
0.00
0.00
3.21
623
632
6.594788
ATTTTGACATGTTTCTAGTGCCAT
57.405
33.333
0.00
0.00
0.00
4.40
692
701
2.177580
CACACGTGTGGGCGTTTCT
61.178
57.895
35.65
1.12
43.83
2.52
693
702
2.326550
CACACGTGTGGGCGTTTC
59.673
61.111
35.65
0.00
43.83
2.78
766
775
0.388134
GACGCTCTACTCAAACCGCA
60.388
55.000
0.00
0.00
0.00
5.69
778
787
0.251354
AATCCATGTGCTGACGCTCT
59.749
50.000
0.00
0.00
36.97
4.09
786
795
1.303561
ACACGGCAATCCATGTGCT
60.304
52.632
6.72
0.00
37.40
4.40
865
876
1.186917
TGCGGGAGAAACTCGGGTTA
61.187
55.000
0.00
0.00
43.48
2.85
885
896
1.873903
CGGATCATACTTTGGCTCCGG
60.874
57.143
0.00
0.00
42.48
5.14
910
929
1.555075
GGACCTGTCTGTGCTAATGGA
59.445
52.381
0.00
0.00
0.00
3.41
911
930
1.278985
TGGACCTGTCTGTGCTAATGG
59.721
52.381
0.00
0.00
0.00
3.16
912
931
2.350522
GTGGACCTGTCTGTGCTAATG
58.649
52.381
0.00
0.00
0.00
1.90
913
932
1.279271
GGTGGACCTGTCTGTGCTAAT
59.721
52.381
0.00
0.00
0.00
1.73
914
933
0.685097
GGTGGACCTGTCTGTGCTAA
59.315
55.000
0.00
0.00
0.00
3.09
915
934
1.192146
GGGTGGACCTGTCTGTGCTA
61.192
60.000
0.00
0.00
35.85
3.49
916
935
2.520536
GGGTGGACCTGTCTGTGCT
61.521
63.158
0.00
0.00
35.85
4.40
917
936
2.032681
GGGTGGACCTGTCTGTGC
59.967
66.667
0.00
0.00
35.85
4.57
955
993
4.711949
CTGCTGCGGCTGAAGGGT
62.712
66.667
20.27
0.00
39.31
4.34
959
997
1.746615
GGAATCTGCTGCGGCTGAA
60.747
57.895
27.97
13.68
46.45
3.02
1225
1281
0.784495
TGGTCCTGGTCTAGTGGAGT
59.216
55.000
0.00
0.00
0.00
3.85
1362
1424
2.358737
CGCACGGCCCTCTTCTTT
60.359
61.111
0.00
0.00
0.00
2.52
1489
1563
4.067192
GAGAGGCTACTACTACTACTGGC
58.933
52.174
0.00
0.00
0.00
4.85
1682
1756
3.313874
CCTCTCCGGCATCCTTGT
58.686
61.111
0.00
0.00
0.00
3.16
1692
1766
0.459237
CTGCAACTACAGCCTCTCCG
60.459
60.000
0.00
0.00
0.00
4.63
1953
2027
1.625818
TCTTTGTCCTTCTCCAGAGCC
59.374
52.381
0.00
0.00
0.00
4.70
2001
2075
4.101585
TCCACCGAATCATAATCAAGCTCT
59.898
41.667
0.00
0.00
0.00
4.09
2061
2135
1.537397
AGCAGCTTCCTCCTCCACA
60.537
57.895
0.00
0.00
0.00
4.17
2115
2189
4.340666
TGCAAGGTGAGTAAAAGAATGCAA
59.659
37.500
0.00
0.00
38.22
4.08
2119
2193
8.860088
AGTTTTATGCAAGGTGAGTAAAAGAAT
58.140
29.630
0.00
0.00
0.00
2.40
2170
2244
7.537596
TTTAAAAGGATGCCTGAATTCAAGA
57.462
32.000
9.88
0.00
32.13
3.02
2297
2375
7.563556
CCCCCACTAGTGTTATCCAATAAAAAT
59.436
37.037
21.18
0.00
0.00
1.82
2314
2392
2.016905
AGCATAGTAGCCCCCACTAG
57.983
55.000
0.00
0.00
32.24
2.57
2322
2400
7.500992
TCAGGCATTATATAAGCATAGTAGCC
58.499
38.462
14.68
0.00
37.52
3.93
2323
2401
9.553064
AATCAGGCATTATATAAGCATAGTAGC
57.447
33.333
14.68
0.00
0.00
3.58
2393
2476
0.532115
ATTTTGGAAGCGATGGCACC
59.468
50.000
1.50
5.77
43.41
5.01
2490
2576
8.454894
GTCTAAAACTTCAAATCATCCTTCTCC
58.545
37.037
0.00
0.00
0.00
3.71
2597
2684
5.430089
AGGGGAATAGCTCTAACAGACAAAT
59.570
40.000
0.00
0.00
0.00
2.32
2612
2700
6.015940
GCCAGTGAATTTCATAAGGGGAATAG
60.016
42.308
1.78
0.00
0.00
1.73
2631
2719
9.881649
AACATAGATATCATATAGTTGCCAGTG
57.118
33.333
5.32
0.00
0.00
3.66
2706
2832
6.072783
AGCTAGAAGAACAGAAACTGAAATGC
60.073
38.462
5.76
0.00
35.18
3.56
2874
3000
6.544928
AAAACCAATTCTGTTTCAACCTCT
57.455
33.333
3.73
0.00
34.97
3.69
2958
3084
8.532819
TCTCCTTTCTTACTTAGAATGTCCTTC
58.467
37.037
0.00
0.00
42.32
3.46
3107
3233
1.129917
ATCTGACTGGGAGCCATGAG
58.870
55.000
0.00
0.00
30.82
2.90
3330
3456
6.748333
TGCCTTGACTTTAAGATTGATGAG
57.252
37.500
0.00
0.00
0.00
2.90
3342
3468
5.420104
CCCAATTCTATCTTGCCTTGACTTT
59.580
40.000
0.00
0.00
0.00
2.66
3370
3496
6.036470
GCGAAATTTCCTCCTCCATTTTTAG
58.964
40.000
12.54
0.00
0.00
1.85
3507
3633
6.755141
TCTTAACAGGACCGAAAAATATCTCG
59.245
38.462
0.00
0.00
34.83
4.04
3734
3860
7.382110
CAGTTCTTCCTTCTCAGAATTCAGTA
58.618
38.462
8.44
0.00
31.71
2.74
3814
3940
2.645838
ATCTTGTCAGTGGTTGCTGT
57.354
45.000
0.00
0.00
37.70
4.40
3879
4005
3.761752
GGAGCCTTTTGTAACTTGCCATA
59.238
43.478
0.00
0.00
0.00
2.74
3903
4029
1.326213
TAGCAGCAGAGGAGTCCAGC
61.326
60.000
12.86
12.32
0.00
4.85
3960
4086
5.515797
TGTGTAATATCTCCACTTCCTCG
57.484
43.478
0.00
0.00
0.00
4.63
3980
4106
0.536006
AGCGGCTTCAGCTTCTTTGT
60.536
50.000
0.00
0.00
43.24
2.83
3999
4125
3.262420
GAGTTCCAGCGCTTTAGATTCA
58.738
45.455
7.50
0.00
0.00
2.57
4044
4170
7.863375
GGCTGAAATATATATTCGTCGCTATCT
59.137
37.037
8.42
0.00
0.00
1.98
4130
4256
1.158007
AGGGGAGAGGCCAAAAGAAA
58.842
50.000
5.01
0.00
38.95
2.52
4237
4363
0.747852
TGAGGTACGCATATTCGCCA
59.252
50.000
0.00
0.00
29.59
5.69
4249
4375
3.764972
AGCTTAGAGGAACAGTGAGGTAC
59.235
47.826
0.00
0.00
0.00
3.34
4257
4383
2.362397
TGCCGATAGCTTAGAGGAACAG
59.638
50.000
0.00
0.00
44.23
3.16
4332
4461
9.225436
GAAAATTCCTCAAGAGTTCAGAGTATT
57.775
33.333
0.00
0.00
0.00
1.89
4422
4551
3.216800
ACTGATAACCCGTCGCTGTATA
58.783
45.455
0.00
0.00
0.00
1.47
4423
4552
2.029623
ACTGATAACCCGTCGCTGTAT
58.970
47.619
0.00
0.00
0.00
2.29
4446
4576
8.641498
ATGGACCCATTATTCTGATTACATTC
57.359
34.615
0.00
0.00
31.82
2.67
4464
4594
6.460261
GCAGAAGAAGCTTTATTAATGGACCC
60.460
42.308
0.00
0.00
0.00
4.46
4465
4595
6.319911
AGCAGAAGAAGCTTTATTAATGGACC
59.680
38.462
0.00
0.00
39.87
4.46
4466
4596
7.326968
AGCAGAAGAAGCTTTATTAATGGAC
57.673
36.000
0.00
0.00
39.87
4.02
4505
4635
3.829601
CAGTCTACTGAGGAAACCAGTCT
59.170
47.826
3.99
0.00
46.59
3.24
4507
4637
2.900546
CCAGTCTACTGAGGAAACCAGT
59.099
50.000
11.69
0.00
46.59
4.00
4508
4638
2.900546
ACCAGTCTACTGAGGAAACCAG
59.099
50.000
11.69
0.00
46.59
4.00
4509
4639
2.972348
ACCAGTCTACTGAGGAAACCA
58.028
47.619
11.69
0.00
46.59
3.67
4510
4640
4.040584
AGAAACCAGTCTACTGAGGAAACC
59.959
45.833
11.69
0.00
46.59
3.27
4511
4641
4.991687
CAGAAACCAGTCTACTGAGGAAAC
59.008
45.833
11.69
0.00
46.59
2.78
4512
4642
4.040461
CCAGAAACCAGTCTACTGAGGAAA
59.960
45.833
11.69
0.00
46.59
3.13
4571
4779
5.111293
CAAGATCGCATTTTAAAAGCCCAT
58.889
37.500
6.79
4.60
0.00
4.00
4640
4848
3.138839
AGGTAGAGAGTAGGTTAGGAGGC
59.861
52.174
0.00
0.00
0.00
4.70
4824
5032
2.575993
CCAGAGGCTCCAGTGACG
59.424
66.667
11.71
0.00
0.00
4.35
4875
5083
4.895889
CCTAGAACATGATACCCTGACTCA
59.104
45.833
0.00
0.00
0.00
3.41
4922
5130
4.892934
AGTGGATCATTAGAGTGAGAGGAC
59.107
45.833
0.00
0.00
0.00
3.85
4952
5160
4.902443
TCATTAGTAGCAACGAGAGGAG
57.098
45.455
0.00
0.00
0.00
3.69
4966
5174
4.261801
CAAGAACGGGTTCCATCATTAGT
58.738
43.478
7.88
0.00
40.33
2.24
5006
5214
7.383029
CACATTGCTATCACTTTCAACAATTGT
59.617
33.333
4.92
4.92
0.00
2.71
5047
5255
5.655974
TGATTGCCTGTCCAATTAGCAAATA
59.344
36.000
0.00
0.00
38.69
1.40
5048
5256
4.467082
TGATTGCCTGTCCAATTAGCAAAT
59.533
37.500
0.00
0.00
38.69
2.32
5062
5270
2.941720
GCTACCTTCTTCTGATTGCCTG
59.058
50.000
0.00
0.00
0.00
4.85
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.