Multiple sequence alignment - TraesCS7B01G140700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G140700 chr7B 100.000 2431 0 0 960 3390 178420109 178417679 0.000000e+00 4490.0
1 TraesCS7B01G140700 chr7B 100.000 674 0 0 1 674 178421068 178420395 0.000000e+00 1245.0
2 TraesCS7B01G140700 chr7D 94.448 1693 57 13 1677 3351 220507984 220509657 0.000000e+00 2571.0
3 TraesCS7B01G140700 chr7D 93.948 727 22 5 960 1675 220507210 220507925 0.000000e+00 1079.0
4 TraesCS7B01G140700 chr7A 96.337 819 29 1 1677 2494 232742988 232743806 0.000000e+00 1345.0
5 TraesCS7B01G140700 chr7A 92.130 864 44 8 2491 3349 232744062 232744906 0.000000e+00 1197.0
6 TraesCS7B01G140700 chr7A 94.773 727 24 3 960 1675 232742203 232742926 0.000000e+00 1120.0
7 TraesCS7B01G140700 chr7A 94.964 139 7 0 536 674 232742047 232742185 5.700000e-53 219.0
8 TraesCS7B01G140700 chr3D 80.462 650 113 12 1762 2406 523840268 523840908 5.090000e-133 484.0
9 TraesCS7B01G140700 chr3D 84.911 338 46 4 4 337 137629976 137629640 1.510000e-88 337.0
10 TraesCS7B01G140700 chr3D 100.000 35 0 0 348 382 17881812 17881778 7.850000e-07 65.8
11 TraesCS7B01G140700 chr4B 90.503 358 31 3 1 356 558550657 558551013 1.420000e-128 470.0
12 TraesCS7B01G140700 chr4B 83.853 353 43 11 5 351 404627080 404627424 1.170000e-84 324.0
13 TraesCS7B01G140700 chr4D 87.069 348 37 6 6 351 280920784 280920443 1.480000e-103 387.0
14 TraesCS7B01G140700 chr2B 86.494 348 42 5 6 351 311669726 311669382 8.880000e-101 377.0
15 TraesCS7B01G140700 chr2B 85.345 348 45 6 6 351 546447842 546447499 4.160000e-94 355.0
16 TraesCS7B01G140700 chr3B 84.741 367 49 6 998 1363 691351157 691351517 8.940000e-96 361.0
17 TraesCS7B01G140700 chr3B 83.095 349 53 6 5 351 271285310 271284966 2.540000e-81 313.0
18 TraesCS7B01G140700 chr5B 89.362 282 30 0 70 351 301545845 301546126 4.160000e-94 355.0
19 TraesCS7B01G140700 chr1A 84.911 338 45 4 5 337 335996280 335995944 1.510000e-88 337.0
20 TraesCS7B01G140700 chr3A 80.653 429 80 3 1980 2406 658750428 658750855 2.520000e-86 329.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G140700 chr7B 178417679 178421068 3389 True 2867.50 4490 100.000 1 3390 2 chr7B.!!$R1 3389
1 TraesCS7B01G140700 chr7D 220507210 220509657 2447 False 1825.00 2571 94.198 960 3351 2 chr7D.!!$F1 2391
2 TraesCS7B01G140700 chr7A 232742047 232744906 2859 False 970.25 1345 94.551 536 3349 4 chr7A.!!$F1 2813
3 TraesCS7B01G140700 chr3D 523840268 523840908 640 False 484.00 484 80.462 1762 2406 1 chr3D.!!$F1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.036732 GGACAAGAGCACACCCATCA 59.963 55.0 0.00 0.00 0.00 3.07 F
461 462 0.036858 AGAAGACAAAGAGGCCTCGC 60.037 55.0 26.95 14.57 34.09 5.03 F
1485 1496 0.394352 ATGTGTGGGCTTTCCGGATC 60.394 55.0 4.15 0.00 38.76 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1465 1476 0.916086 ATCCGGAAAGCCCACACATA 59.084 50.000 9.01 0.00 34.14 2.29 R
2065 2146 1.225854 CGCTGCTTCAAACGCTAGC 60.226 57.895 4.06 4.06 35.50 3.42 R
3362 3720 0.246360 GGGGTGCAAACATTACCTGC 59.754 55.000 0.00 0.00 34.87 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.792635 AAGAAGGAGGGAGGGGTTG 58.207 57.895 0.00 0.00 0.00 3.77
19 20 0.103876 AAGAAGGAGGGAGGGGTTGT 60.104 55.000 0.00 0.00 0.00 3.32
20 21 0.842467 AGAAGGAGGGAGGGGTTGTG 60.842 60.000 0.00 0.00 0.00 3.33
21 22 1.852626 AAGGAGGGAGGGGTTGTGG 60.853 63.158 0.00 0.00 0.00 4.17
22 23 4.048470 GGAGGGAGGGGTTGTGGC 62.048 72.222 0.00 0.00 0.00 5.01
23 24 4.410400 GAGGGAGGGGTTGTGGCG 62.410 72.222 0.00 0.00 0.00 5.69
40 41 4.875713 GTGCGGGGCGATGGGATT 62.876 66.667 0.00 0.00 0.00 3.01
41 42 4.873810 TGCGGGGCGATGGGATTG 62.874 66.667 0.00 0.00 0.00 2.67
43 44 3.872603 CGGGGCGATGGGATTGGA 61.873 66.667 0.00 0.00 0.00 3.53
44 45 2.203351 GGGGCGATGGGATTGGAC 60.203 66.667 0.00 0.00 0.00 4.02
45 46 2.203351 GGGCGATGGGATTGGACC 60.203 66.667 0.00 0.00 0.00 4.46
46 47 2.595095 GGCGATGGGATTGGACCA 59.405 61.111 0.00 0.00 43.22 4.02
47 48 1.077068 GGCGATGGGATTGGACCAA 60.077 57.895 9.92 9.92 42.17 3.67
48 49 1.103398 GGCGATGGGATTGGACCAAG 61.103 60.000 13.43 0.00 42.17 3.61
49 50 1.103398 GCGATGGGATTGGACCAAGG 61.103 60.000 13.43 0.00 42.17 3.61
50 51 0.255890 CGATGGGATTGGACCAAGGT 59.744 55.000 13.43 0.00 42.17 3.50
51 52 1.767759 GATGGGATTGGACCAAGGTG 58.232 55.000 13.43 0.00 42.17 4.00
52 53 0.324645 ATGGGATTGGACCAAGGTGC 60.325 55.000 13.43 3.55 42.17 5.01
53 54 1.384191 GGGATTGGACCAAGGTGCT 59.616 57.895 13.43 0.00 37.36 4.40
54 55 0.251787 GGGATTGGACCAAGGTGCTT 60.252 55.000 13.43 0.00 37.36 3.91
55 56 1.632589 GGATTGGACCAAGGTGCTTT 58.367 50.000 13.43 0.00 37.36 3.51
56 57 1.546029 GGATTGGACCAAGGTGCTTTC 59.454 52.381 13.43 3.21 37.36 2.62
57 58 1.200020 GATTGGACCAAGGTGCTTTCG 59.800 52.381 13.43 0.00 37.36 3.46
58 59 0.181587 TTGGACCAAGGTGCTTTCGA 59.818 50.000 12.07 0.00 37.36 3.71
59 60 0.250295 TGGACCAAGGTGCTTTCGAG 60.250 55.000 12.07 0.00 37.36 4.04
60 61 0.955919 GGACCAAGGTGCTTTCGAGG 60.956 60.000 3.25 0.00 33.56 4.63
61 62 0.955919 GACCAAGGTGCTTTCGAGGG 60.956 60.000 0.00 0.00 0.00 4.30
62 63 2.335712 CCAAGGTGCTTTCGAGGGC 61.336 63.158 4.99 4.99 0.00 5.19
63 64 1.600636 CAAGGTGCTTTCGAGGGCA 60.601 57.895 9.73 9.73 36.01 5.36
64 65 0.962356 CAAGGTGCTTTCGAGGGCAT 60.962 55.000 15.40 0.95 40.66 4.40
65 66 0.962356 AAGGTGCTTTCGAGGGCATG 60.962 55.000 15.40 0.00 40.66 4.06
66 67 2.409870 GGTGCTTTCGAGGGCATGG 61.410 63.158 15.40 0.00 40.66 3.66
67 68 2.751436 TGCTTTCGAGGGCATGGC 60.751 61.111 11.56 11.56 33.23 4.40
68 69 2.439156 GCTTTCGAGGGCATGGCT 60.439 61.111 19.78 5.03 0.00 4.75
69 70 1.153168 GCTTTCGAGGGCATGGCTA 60.153 57.895 19.78 0.00 0.00 3.93
70 71 1.440145 GCTTTCGAGGGCATGGCTAC 61.440 60.000 19.78 12.02 0.00 3.58
71 72 0.815615 CTTTCGAGGGCATGGCTACC 60.816 60.000 19.78 7.53 0.00 3.18
78 79 2.897350 GCATGGCTACCCACGCTC 60.897 66.667 0.00 0.00 46.42 5.03
79 80 2.203070 CATGGCTACCCACGCTCC 60.203 66.667 0.00 0.00 45.77 4.70
80 81 3.480133 ATGGCTACCCACGCTCCC 61.480 66.667 0.00 0.00 45.77 4.30
84 85 4.077184 CTACCCACGCTCCCGCAA 62.077 66.667 0.00 0.00 38.22 4.85
85 86 3.599285 CTACCCACGCTCCCGCAAA 62.599 63.158 0.00 0.00 38.22 3.68
86 87 2.869503 CTACCCACGCTCCCGCAAAT 62.870 60.000 0.00 0.00 38.22 2.32
87 88 3.814268 CCCACGCTCCCGCAAATG 61.814 66.667 0.00 0.00 38.22 2.32
88 89 3.814268 CCACGCTCCCGCAAATGG 61.814 66.667 0.00 0.00 38.22 3.16
89 90 4.481112 CACGCTCCCGCAAATGGC 62.481 66.667 0.00 0.00 38.22 4.40
136 137 4.980805 GCACACCCGCACCTCGAA 62.981 66.667 0.00 0.00 41.67 3.71
137 138 2.280524 CACACCCGCACCTCGAAA 60.281 61.111 0.00 0.00 41.67 3.46
138 139 2.280592 ACACCCGCACCTCGAAAC 60.281 61.111 0.00 0.00 41.67 2.78
139 140 2.280524 CACCCGCACCTCGAAACA 60.281 61.111 0.00 0.00 41.67 2.83
140 141 2.030562 ACCCGCACCTCGAAACAG 59.969 61.111 0.00 0.00 41.67 3.16
141 142 3.423154 CCCGCACCTCGAAACAGC 61.423 66.667 0.00 0.00 41.67 4.40
142 143 2.357517 CCGCACCTCGAAACAGCT 60.358 61.111 0.00 0.00 41.67 4.24
143 144 1.961277 CCGCACCTCGAAACAGCTT 60.961 57.895 0.00 0.00 41.67 3.74
144 145 0.669318 CCGCACCTCGAAACAGCTTA 60.669 55.000 0.00 0.00 41.67 3.09
145 146 0.438830 CGCACCTCGAAACAGCTTAC 59.561 55.000 0.00 0.00 41.67 2.34
146 147 0.796927 GCACCTCGAAACAGCTTACC 59.203 55.000 0.00 0.00 0.00 2.85
147 148 1.439679 CACCTCGAAACAGCTTACCC 58.560 55.000 0.00 0.00 0.00 3.69
148 149 1.053424 ACCTCGAAACAGCTTACCCA 58.947 50.000 0.00 0.00 0.00 4.51
149 150 1.002087 ACCTCGAAACAGCTTACCCAG 59.998 52.381 0.00 0.00 0.00 4.45
157 158 4.002797 GCTTACCCAGCCAACAGG 57.997 61.111 0.00 0.00 43.65 4.00
167 168 2.203280 CCAACAGGCACGGGACAA 60.203 61.111 0.00 0.00 0.00 3.18
168 169 2.260869 CCAACAGGCACGGGACAAG 61.261 63.158 0.00 0.00 0.00 3.16
169 170 1.227823 CAACAGGCACGGGACAAGA 60.228 57.895 0.00 0.00 0.00 3.02
170 171 1.071471 AACAGGCACGGGACAAGAG 59.929 57.895 0.00 0.00 0.00 2.85
171 172 2.743928 CAGGCACGGGACAAGAGC 60.744 66.667 0.00 0.00 0.00 4.09
172 173 3.241530 AGGCACGGGACAAGAGCA 61.242 61.111 0.00 0.00 0.00 4.26
173 174 3.050275 GGCACGGGACAAGAGCAC 61.050 66.667 0.00 0.00 0.00 4.40
174 175 2.280797 GCACGGGACAAGAGCACA 60.281 61.111 0.00 0.00 0.00 4.57
175 176 2.607892 GCACGGGACAAGAGCACAC 61.608 63.158 0.00 0.00 0.00 3.82
176 177 1.961277 CACGGGACAAGAGCACACC 60.961 63.158 0.00 0.00 0.00 4.16
177 178 2.358737 CGGGACAAGAGCACACCC 60.359 66.667 0.00 0.00 37.42 4.61
178 179 2.836154 GGGACAAGAGCACACCCA 59.164 61.111 0.00 0.00 40.20 4.51
179 180 1.380302 GGGACAAGAGCACACCCAT 59.620 57.895 0.00 0.00 40.20 4.00
180 181 0.678048 GGGACAAGAGCACACCCATC 60.678 60.000 0.00 0.00 40.20 3.51
181 182 0.036732 GGACAAGAGCACACCCATCA 59.963 55.000 0.00 0.00 0.00 3.07
182 183 1.340405 GGACAAGAGCACACCCATCAT 60.340 52.381 0.00 0.00 0.00 2.45
183 184 2.440409 GACAAGAGCACACCCATCATT 58.560 47.619 0.00 0.00 0.00 2.57
184 185 2.163010 GACAAGAGCACACCCATCATTG 59.837 50.000 0.00 0.00 0.00 2.82
185 186 1.475280 CAAGAGCACACCCATCATTGG 59.525 52.381 0.00 0.00 43.23 3.16
186 187 0.682209 AGAGCACACCCATCATTGGC 60.682 55.000 0.00 0.00 42.15 4.52
187 188 1.669999 GAGCACACCCATCATTGGCC 61.670 60.000 0.00 0.00 42.15 5.36
188 189 1.983481 GCACACCCATCATTGGCCA 60.983 57.895 0.00 0.00 42.15 5.36
189 190 1.332144 GCACACCCATCATTGGCCAT 61.332 55.000 6.09 0.00 42.15 4.40
190 191 0.462375 CACACCCATCATTGGCCATG 59.538 55.000 6.09 7.61 42.15 3.66
191 192 0.041535 ACACCCATCATTGGCCATGT 59.958 50.000 6.09 1.47 42.15 3.21
192 193 0.462375 CACCCATCATTGGCCATGTG 59.538 55.000 6.09 9.53 42.15 3.21
193 194 0.335705 ACCCATCATTGGCCATGTGA 59.664 50.000 19.94 19.94 42.15 3.58
194 195 1.273154 ACCCATCATTGGCCATGTGAA 60.273 47.619 21.10 0.80 42.15 3.18
195 196 1.411246 CCCATCATTGGCCATGTGAAG 59.589 52.381 21.10 17.33 42.15 3.02
196 197 2.104967 CCATCATTGGCCATGTGAAGT 58.895 47.619 21.10 7.07 35.85 3.01
197 198 2.498481 CCATCATTGGCCATGTGAAGTT 59.502 45.455 21.10 6.46 35.85 2.66
198 199 3.700539 CCATCATTGGCCATGTGAAGTTA 59.299 43.478 21.10 0.00 35.85 2.24
199 200 4.160065 CCATCATTGGCCATGTGAAGTTAA 59.840 41.667 21.10 0.00 35.85 2.01
200 201 4.782019 TCATTGGCCATGTGAAGTTAAC 57.218 40.909 16.55 0.00 34.06 2.01
201 202 4.148079 TCATTGGCCATGTGAAGTTAACA 58.852 39.130 16.55 0.00 34.06 2.41
202 203 4.022416 TCATTGGCCATGTGAAGTTAACAC 60.022 41.667 16.55 2.22 38.55 3.32
203 204 1.876799 TGGCCATGTGAAGTTAACACG 59.123 47.619 0.00 0.00 40.61 4.49
204 205 1.877443 GGCCATGTGAAGTTAACACGT 59.123 47.619 8.61 0.00 40.61 4.49
208 209 4.128554 CATGTGAAGTTAACACGTGGTC 57.871 45.455 21.57 1.67 45.65 4.02
209 210 3.248495 TGTGAAGTTAACACGTGGTCA 57.752 42.857 21.57 0.59 40.61 4.02
210 211 3.597255 TGTGAAGTTAACACGTGGTCAA 58.403 40.909 21.57 7.56 40.61 3.18
211 212 4.001652 TGTGAAGTTAACACGTGGTCAAA 58.998 39.130 21.57 1.95 40.61 2.69
212 213 4.454847 TGTGAAGTTAACACGTGGTCAAAA 59.545 37.500 21.57 1.08 40.61 2.44
213 214 4.789629 GTGAAGTTAACACGTGGTCAAAAC 59.210 41.667 21.57 14.80 0.00 2.43
214 215 4.454847 TGAAGTTAACACGTGGTCAAAACA 59.545 37.500 21.57 9.36 0.00 2.83
215 216 5.048921 TGAAGTTAACACGTGGTCAAAACAA 60.049 36.000 21.57 0.00 0.00 2.83
216 217 4.976987 AGTTAACACGTGGTCAAAACAAG 58.023 39.130 21.57 0.00 0.00 3.16
217 218 2.271821 AACACGTGGTCAAAACAAGC 57.728 45.000 21.57 0.00 0.00 4.01
218 219 1.169577 ACACGTGGTCAAAACAAGCA 58.830 45.000 21.57 0.00 0.00 3.91
219 220 1.132262 ACACGTGGTCAAAACAAGCAG 59.868 47.619 21.57 0.00 0.00 4.24
220 221 0.100503 ACGTGGTCAAAACAAGCAGC 59.899 50.000 0.00 0.00 0.00 5.25
221 222 0.929824 CGTGGTCAAAACAAGCAGCG 60.930 55.000 0.00 0.00 0.00 5.18
222 223 0.380378 GTGGTCAAAACAAGCAGCGA 59.620 50.000 0.00 0.00 0.00 4.93
223 224 0.662619 TGGTCAAAACAAGCAGCGAG 59.337 50.000 0.00 0.00 0.00 5.03
224 225 0.944386 GGTCAAAACAAGCAGCGAGA 59.056 50.000 0.00 0.00 0.00 4.04
225 226 1.069636 GGTCAAAACAAGCAGCGAGAG 60.070 52.381 0.00 0.00 0.00 3.20
243 244 1.348594 GCAACGAGCATCTAACGGC 59.651 57.895 0.00 0.00 44.79 5.68
244 245 1.084370 GCAACGAGCATCTAACGGCT 61.084 55.000 0.00 0.00 44.79 5.52
250 251 1.359848 AGCATCTAACGGCTCAAACG 58.640 50.000 0.00 0.00 34.76 3.60
251 252 1.067142 AGCATCTAACGGCTCAAACGA 60.067 47.619 0.00 0.00 34.76 3.85
252 253 1.730064 GCATCTAACGGCTCAAACGAA 59.270 47.619 0.00 0.00 34.93 3.85
253 254 2.222819 GCATCTAACGGCTCAAACGAAG 60.223 50.000 0.00 0.00 34.93 3.79
254 255 1.425412 TCTAACGGCTCAAACGAAGC 58.575 50.000 0.00 0.00 39.09 3.86
262 263 1.858458 GCTCAAACGAAGCCAAAAACC 59.142 47.619 0.00 0.00 33.53 3.27
263 264 2.737039 GCTCAAACGAAGCCAAAAACCA 60.737 45.455 0.00 0.00 33.53 3.67
264 265 3.516615 CTCAAACGAAGCCAAAAACCAA 58.483 40.909 0.00 0.00 0.00 3.67
265 266 3.926616 TCAAACGAAGCCAAAAACCAAA 58.073 36.364 0.00 0.00 0.00 3.28
266 267 3.680458 TCAAACGAAGCCAAAAACCAAAC 59.320 39.130 0.00 0.00 0.00 2.93
267 268 3.603158 AACGAAGCCAAAAACCAAACT 57.397 38.095 0.00 0.00 0.00 2.66
268 269 2.887337 ACGAAGCCAAAAACCAAACTG 58.113 42.857 0.00 0.00 0.00 3.16
269 270 2.494073 ACGAAGCCAAAAACCAAACTGA 59.506 40.909 0.00 0.00 0.00 3.41
270 271 2.857748 CGAAGCCAAAAACCAAACTGAC 59.142 45.455 0.00 0.00 0.00 3.51
271 272 2.979814 AGCCAAAAACCAAACTGACC 57.020 45.000 0.00 0.00 0.00 4.02
272 273 2.183679 AGCCAAAAACCAAACTGACCA 58.816 42.857 0.00 0.00 0.00 4.02
273 274 2.093711 AGCCAAAAACCAAACTGACCAC 60.094 45.455 0.00 0.00 0.00 4.16
274 275 2.535331 CCAAAAACCAAACTGACCACG 58.465 47.619 0.00 0.00 0.00 4.94
275 276 2.164624 CCAAAAACCAAACTGACCACGA 59.835 45.455 0.00 0.00 0.00 4.35
276 277 3.181480 CCAAAAACCAAACTGACCACGAT 60.181 43.478 0.00 0.00 0.00 3.73
277 278 3.982576 AAAACCAAACTGACCACGATC 57.017 42.857 0.00 0.00 0.00 3.69
278 279 1.892209 AACCAAACTGACCACGATCC 58.108 50.000 0.00 0.00 0.00 3.36
279 280 0.762418 ACCAAACTGACCACGATCCA 59.238 50.000 0.00 0.00 0.00 3.41
280 281 1.142060 ACCAAACTGACCACGATCCAA 59.858 47.619 0.00 0.00 0.00 3.53
281 282 2.224769 ACCAAACTGACCACGATCCAAT 60.225 45.455 0.00 0.00 0.00 3.16
282 283 2.162208 CCAAACTGACCACGATCCAATG 59.838 50.000 0.00 0.00 0.00 2.82
283 284 2.113860 AACTGACCACGATCCAATGG 57.886 50.000 0.00 0.00 42.13 3.16
284 285 0.392998 ACTGACCACGATCCAATGGC 60.393 55.000 0.00 0.85 39.84 4.40
285 286 1.077787 TGACCACGATCCAATGGCC 60.078 57.895 0.00 0.00 39.84 5.36
286 287 1.077787 GACCACGATCCAATGGCCA 60.078 57.895 8.56 8.56 39.84 5.36
287 288 0.679640 GACCACGATCCAATGGCCAA 60.680 55.000 10.96 0.00 39.84 4.52
288 289 0.965363 ACCACGATCCAATGGCCAAC 60.965 55.000 10.96 0.00 39.84 3.77
289 290 1.429021 CACGATCCAATGGCCAACG 59.571 57.895 10.96 11.56 0.00 4.10
290 291 1.024046 CACGATCCAATGGCCAACGA 61.024 55.000 10.96 5.78 0.00 3.85
291 292 0.322098 ACGATCCAATGGCCAACGAA 60.322 50.000 10.96 0.00 0.00 3.85
292 293 0.378257 CGATCCAATGGCCAACGAAG 59.622 55.000 10.96 0.00 0.00 3.79
293 294 0.101219 GATCCAATGGCCAACGAAGC 59.899 55.000 10.96 0.00 0.00 3.86
294 295 0.323725 ATCCAATGGCCAACGAAGCT 60.324 50.000 10.96 0.00 0.00 3.74
295 296 0.539438 TCCAATGGCCAACGAAGCTT 60.539 50.000 10.96 0.00 0.00 3.74
296 297 0.388907 CCAATGGCCAACGAAGCTTG 60.389 55.000 10.96 7.89 0.00 4.01
297 298 1.010419 CAATGGCCAACGAAGCTTGC 61.010 55.000 10.96 0.00 0.00 4.01
298 299 2.158561 AATGGCCAACGAAGCTTGCC 62.159 55.000 10.96 15.92 0.00 4.52
299 300 3.294493 GGCCAACGAAGCTTGCCA 61.294 61.111 17.44 0.00 0.00 4.92
300 301 2.639327 GGCCAACGAAGCTTGCCAT 61.639 57.895 17.44 0.00 0.00 4.40
301 302 1.153958 GCCAACGAAGCTTGCCATC 60.154 57.895 2.10 0.00 0.00 3.51
302 303 1.135315 CCAACGAAGCTTGCCATCG 59.865 57.895 2.10 2.82 40.27 3.84
303 304 1.298157 CCAACGAAGCTTGCCATCGA 61.298 55.000 19.94 0.00 38.01 3.59
304 305 0.095935 CAACGAAGCTTGCCATCGAG 59.904 55.000 19.94 11.04 38.01 4.04
305 306 1.021390 AACGAAGCTTGCCATCGAGG 61.021 55.000 19.94 0.00 38.01 4.63
306 307 2.176273 CGAAGCTTGCCATCGAGGG 61.176 63.158 12.83 12.83 36.83 4.30
307 308 1.221840 GAAGCTTGCCATCGAGGGA 59.778 57.895 22.53 5.59 38.09 4.20
308 309 0.392998 GAAGCTTGCCATCGAGGGAA 60.393 55.000 22.53 6.45 46.52 3.97
309 310 0.678048 AAGCTTGCCATCGAGGGAAC 60.678 55.000 22.53 3.14 43.52 3.62
310 311 2.464459 GCTTGCCATCGAGGGAACG 61.464 63.158 22.53 8.56 43.52 3.95
311 312 2.435938 TTGCCATCGAGGGAACGC 60.436 61.111 22.53 4.50 43.52 4.84
312 313 3.969250 TTGCCATCGAGGGAACGCC 62.969 63.158 22.53 1.45 43.52 5.68
313 314 4.162690 GCCATCGAGGGAACGCCT 62.163 66.667 22.53 0.00 38.09 5.52
314 315 2.584608 CCATCGAGGGAACGCCTT 59.415 61.111 11.55 0.00 0.00 4.35
315 316 1.820581 CCATCGAGGGAACGCCTTA 59.179 57.895 11.55 0.00 0.00 2.69
316 317 0.249489 CCATCGAGGGAACGCCTTAG 60.249 60.000 11.55 0.00 0.00 2.18
317 318 0.249489 CATCGAGGGAACGCCTTAGG 60.249 60.000 0.00 0.00 0.00 2.69
318 319 0.396695 ATCGAGGGAACGCCTTAGGA 60.397 55.000 0.69 0.00 0.00 2.94
319 320 1.035932 TCGAGGGAACGCCTTAGGAG 61.036 60.000 0.69 0.00 0.00 3.69
320 321 1.144276 GAGGGAACGCCTTAGGAGC 59.856 63.158 0.69 0.00 0.00 4.70
327 328 4.522971 GCCTTAGGAGCGAGTTGG 57.477 61.111 0.69 0.00 0.00 3.77
328 329 1.815840 GCCTTAGGAGCGAGTTGGC 60.816 63.158 0.69 0.00 0.00 4.52
330 331 1.112113 CCTTAGGAGCGAGTTGGCTA 58.888 55.000 0.00 0.00 44.93 3.93
331 332 1.067821 CCTTAGGAGCGAGTTGGCTAG 59.932 57.143 0.00 0.00 44.93 3.42
332 333 0.460311 TTAGGAGCGAGTTGGCTAGC 59.540 55.000 6.04 6.04 44.93 3.42
336 337 4.921834 GCGAGTTGGCTAGCTTCT 57.078 55.556 15.72 10.34 39.73 2.85
337 338 3.145228 GCGAGTTGGCTAGCTTCTT 57.855 52.632 15.72 0.00 39.73 2.52
338 339 1.443802 GCGAGTTGGCTAGCTTCTTT 58.556 50.000 15.72 0.00 39.73 2.52
339 340 1.807142 GCGAGTTGGCTAGCTTCTTTT 59.193 47.619 15.72 0.00 39.73 2.27
340 341 2.226674 GCGAGTTGGCTAGCTTCTTTTT 59.773 45.455 15.72 0.00 39.73 1.94
359 360 4.439253 TTTTGTTTTAAATGGGGTGGGG 57.561 40.909 0.00 0.00 0.00 4.96
360 361 2.031495 TGTTTTAAATGGGGTGGGGG 57.969 50.000 0.00 0.00 0.00 5.40
361 362 1.508185 TGTTTTAAATGGGGTGGGGGA 59.492 47.619 0.00 0.00 0.00 4.81
362 363 2.090153 TGTTTTAAATGGGGTGGGGGAA 60.090 45.455 0.00 0.00 0.00 3.97
363 364 2.980379 GTTTTAAATGGGGTGGGGGAAA 59.020 45.455 0.00 0.00 0.00 3.13
364 365 2.328992 TTAAATGGGGTGGGGGAAAC 57.671 50.000 0.00 0.00 0.00 2.78
425 426 5.977489 AATTACTGTAAACCAAAGAGGCC 57.023 39.130 4.11 0.00 43.14 5.19
426 427 4.717279 TTACTGTAAACCAAAGAGGCCT 57.283 40.909 3.86 3.86 43.14 5.19
427 428 3.141767 ACTGTAAACCAAAGAGGCCTC 57.858 47.619 26.22 26.22 43.14 4.70
428 429 2.224793 ACTGTAAACCAAAGAGGCCTCC 60.225 50.000 29.54 11.59 43.14 4.30
429 430 1.074889 TGTAAACCAAAGAGGCCTCCC 59.925 52.381 29.54 6.19 43.14 4.30
430 431 1.354705 GTAAACCAAAGAGGCCTCCCT 59.645 52.381 29.54 14.35 46.74 4.20
457 458 5.521906 AAAAAGAAGAAGACAAAGAGGCC 57.478 39.130 0.00 0.00 0.00 5.19
458 459 4.445557 AAAGAAGAAGACAAAGAGGCCT 57.554 40.909 3.86 3.86 0.00 5.19
459 460 3.694043 AGAAGAAGACAAAGAGGCCTC 57.306 47.619 26.22 26.22 0.00 4.70
460 461 2.028567 AGAAGAAGACAAAGAGGCCTCG 60.029 50.000 26.95 15.50 34.09 4.63
461 462 0.036858 AGAAGACAAAGAGGCCTCGC 60.037 55.000 26.95 14.57 34.09 5.03
462 463 1.355066 GAAGACAAAGAGGCCTCGCG 61.355 60.000 26.95 20.33 34.09 5.87
463 464 2.788191 AAGACAAAGAGGCCTCGCGG 62.788 60.000 26.95 20.77 34.09 6.46
464 465 4.394712 ACAAAGAGGCCTCGCGGG 62.395 66.667 26.95 19.05 38.36 6.13
465 466 4.082523 CAAAGAGGCCTCGCGGGA 62.083 66.667 26.95 0.92 37.23 5.14
466 467 3.319198 AAAGAGGCCTCGCGGGAA 61.319 61.111 26.95 0.00 37.23 3.97
467 468 2.670148 AAAGAGGCCTCGCGGGAAT 61.670 57.895 26.95 4.70 37.23 3.01
468 469 2.198304 AAAGAGGCCTCGCGGGAATT 62.198 55.000 26.95 11.16 37.23 2.17
469 470 2.876368 AAGAGGCCTCGCGGGAATTG 62.876 60.000 26.95 0.00 37.23 2.32
470 471 3.385749 GAGGCCTCGCGGGAATTGA 62.386 63.158 19.06 0.00 37.23 2.57
471 472 2.897350 GGCCTCGCGGGAATTGAG 60.897 66.667 8.08 0.00 37.23 3.02
472 473 2.125106 GCCTCGCGGGAATTGAGT 60.125 61.111 8.08 0.00 37.23 3.41
473 474 1.745489 GCCTCGCGGGAATTGAGTT 60.745 57.895 8.08 0.00 37.23 3.01
474 475 1.982073 GCCTCGCGGGAATTGAGTTG 61.982 60.000 8.08 0.00 37.23 3.16
475 476 1.425428 CTCGCGGGAATTGAGTTGC 59.575 57.895 0.00 0.00 0.00 4.17
476 477 2.098298 CGCGGGAATTGAGTTGCG 59.902 61.111 0.00 0.00 39.57 4.85
477 478 2.677003 CGCGGGAATTGAGTTGCGT 61.677 57.895 0.00 0.00 40.61 5.24
478 479 1.579429 GCGGGAATTGAGTTGCGTT 59.421 52.632 0.00 0.00 0.00 4.84
479 480 0.800012 GCGGGAATTGAGTTGCGTTA 59.200 50.000 0.00 0.00 0.00 3.18
480 481 1.400494 GCGGGAATTGAGTTGCGTTAT 59.600 47.619 0.00 0.00 0.00 1.89
481 482 2.791158 GCGGGAATTGAGTTGCGTTATG 60.791 50.000 0.00 0.00 0.00 1.90
482 483 2.418628 CGGGAATTGAGTTGCGTTATGT 59.581 45.455 0.00 0.00 0.00 2.29
483 484 3.119990 CGGGAATTGAGTTGCGTTATGTT 60.120 43.478 0.00 0.00 0.00 2.71
484 485 4.412207 GGGAATTGAGTTGCGTTATGTTC 58.588 43.478 0.00 0.00 0.00 3.18
485 486 4.412207 GGAATTGAGTTGCGTTATGTTCC 58.588 43.478 0.00 0.00 0.00 3.62
486 487 4.083003 GGAATTGAGTTGCGTTATGTTCCA 60.083 41.667 0.00 0.00 34.28 3.53
487 488 5.393027 GGAATTGAGTTGCGTTATGTTCCAT 60.393 40.000 0.00 0.00 34.28 3.41
488 489 5.643379 ATTGAGTTGCGTTATGTTCCATT 57.357 34.783 0.00 0.00 0.00 3.16
489 490 5.446143 TTGAGTTGCGTTATGTTCCATTT 57.554 34.783 0.00 0.00 0.00 2.32
490 491 5.446143 TGAGTTGCGTTATGTTCCATTTT 57.554 34.783 0.00 0.00 0.00 1.82
491 492 5.837437 TGAGTTGCGTTATGTTCCATTTTT 58.163 33.333 0.00 0.00 0.00 1.94
492 493 5.918011 TGAGTTGCGTTATGTTCCATTTTTC 59.082 36.000 0.00 0.00 0.00 2.29
493 494 6.084326 AGTTGCGTTATGTTCCATTTTTCT 57.916 33.333 0.00 0.00 0.00 2.52
494 495 6.512297 AGTTGCGTTATGTTCCATTTTTCTT 58.488 32.000 0.00 0.00 0.00 2.52
495 496 6.983890 AGTTGCGTTATGTTCCATTTTTCTTT 59.016 30.769 0.00 0.00 0.00 2.52
496 497 7.169140 AGTTGCGTTATGTTCCATTTTTCTTTC 59.831 33.333 0.00 0.00 0.00 2.62
497 498 6.744112 TGCGTTATGTTCCATTTTTCTTTCT 58.256 32.000 0.00 0.00 0.00 2.52
498 499 7.206687 TGCGTTATGTTCCATTTTTCTTTCTT 58.793 30.769 0.00 0.00 0.00 2.52
499 500 7.708752 TGCGTTATGTTCCATTTTTCTTTCTTT 59.291 29.630 0.00 0.00 0.00 2.52
500 501 8.214472 GCGTTATGTTCCATTTTTCTTTCTTTC 58.786 33.333 0.00 0.00 0.00 2.62
501 502 9.463443 CGTTATGTTCCATTTTTCTTTCTTTCT 57.537 29.630 0.00 0.00 0.00 2.52
506 507 9.586435 TGTTCCATTTTTCTTTCTTTCTTTCTC 57.414 29.630 0.00 0.00 0.00 2.87
507 508 9.809096 GTTCCATTTTTCTTTCTTTCTTTCTCT 57.191 29.630 0.00 0.00 0.00 3.10
508 509 9.807649 TTCCATTTTTCTTTCTTTCTTTCTCTG 57.192 29.630 0.00 0.00 0.00 3.35
509 510 8.971073 TCCATTTTTCTTTCTTTCTTTCTCTGT 58.029 29.630 0.00 0.00 0.00 3.41
516 517 9.627123 TTCTTTCTTTCTTTCTCTGTAATTCCA 57.373 29.630 0.00 0.00 0.00 3.53
517 518 9.799106 TCTTTCTTTCTTTCTCTGTAATTCCAT 57.201 29.630 0.00 0.00 0.00 3.41
594 595 4.473520 ACCGGCATTCCCTCTGCG 62.474 66.667 0.00 0.00 40.59 5.18
616 617 4.335647 CGGCCACCAACCAGCTCT 62.336 66.667 2.24 0.00 0.00 4.09
637 638 1.000486 TTCCTCCTCTCACCTCCCG 60.000 63.158 0.00 0.00 0.00 5.14
667 668 4.388499 GGCGAGGGAACGAAGCCA 62.388 66.667 0.00 0.00 44.49 4.75
1037 1038 1.569479 GCGTGGTTTCTGCTCCTGTC 61.569 60.000 0.00 0.00 0.00 3.51
1170 1171 3.651423 ACTACTTCAAGGCCTACCAGTTT 59.349 43.478 5.16 0.00 39.06 2.66
1232 1233 2.494918 CGGCTTCTGGGACTACCG 59.505 66.667 0.00 0.00 44.64 4.02
1269 1270 4.273257 GCCCTCTACGAGCCTCGC 62.273 72.222 15.20 0.00 45.12 5.03
1326 1327 4.821589 GAGGTCGCCGCCTTCCTG 62.822 72.222 1.75 0.00 39.34 3.86
1356 1357 1.585006 CGCCAAGACCTCGTGTACT 59.415 57.895 0.00 0.00 0.00 2.73
1405 1416 5.480772 TCACCTTCCGGGATATAGAGAAATC 59.519 44.000 0.00 0.00 38.76 2.17
1406 1417 5.246203 CACCTTCCGGGATATAGAGAAATCA 59.754 44.000 0.00 0.00 38.76 2.57
1465 1476 4.898861 TGAATTTCAAGCCAGGGTTAAACT 59.101 37.500 2.79 0.00 0.00 2.66
1485 1496 0.394352 ATGTGTGGGCTTTCCGGATC 60.394 55.000 4.15 0.00 38.76 3.36
1502 1513 4.380444 CCGGATCCAACGAAATGTGAATTT 60.380 41.667 13.41 0.00 0.00 1.82
1506 1517 6.349777 GGATCCAACGAAATGTGAATTTGGTA 60.350 38.462 6.95 0.00 35.87 3.25
1507 1518 6.007936 TCCAACGAAATGTGAATTTGGTAG 57.992 37.500 0.00 0.00 35.87 3.18
1508 1519 5.533154 TCCAACGAAATGTGAATTTGGTAGT 59.467 36.000 0.00 0.00 35.87 2.73
1509 1520 6.711194 TCCAACGAAATGTGAATTTGGTAGTA 59.289 34.615 0.00 0.00 35.87 1.82
1510 1521 6.799925 CCAACGAAATGTGAATTTGGTAGTAC 59.200 38.462 0.00 0.00 32.58 2.73
1551 1567 5.357878 TGGAATAGTGTTTCATCAGAATGGC 59.642 40.000 0.00 0.00 36.16 4.40
1588 1605 4.595762 AACTTGACATCTGCAAAGCATT 57.404 36.364 0.00 0.00 38.13 3.56
1594 1611 3.841643 ACATCTGCAAAGCATTGTTAGC 58.158 40.909 3.31 0.00 38.13 3.09
1627 1644 9.737844 ATTATTGCCCATCAAGTTTTAATTTGT 57.262 25.926 0.00 0.00 38.22 2.83
1629 1646 8.776376 ATTGCCCATCAAGTTTTAATTTGTAG 57.224 30.769 0.00 0.00 38.22 2.74
1916 1997 5.129980 TCAGGCTGATATGTTCTTCTGTCAT 59.870 40.000 14.43 0.00 0.00 3.06
2002 2083 6.901300 TCCTCAGGAACTACAACTATGGTATT 59.099 38.462 0.00 0.00 36.02 1.89
2035 2116 4.574013 GGTATCAAGCAGGATCTGTTGAAG 59.426 45.833 12.87 0.00 36.22 3.02
2065 2146 3.440173 AGTTATTGGAACAGAATGCCACG 59.560 43.478 0.00 0.00 42.53 4.94
2071 2152 1.361668 AACAGAATGCCACGCTAGCG 61.362 55.000 34.27 34.27 42.53 4.26
2306 2387 8.771521 TCAACATTATCTTGATTTGATGGGAT 57.228 30.769 0.00 0.00 0.00 3.85
2361 2442 1.926511 GCCGACCAAGTGCCATTCAG 61.927 60.000 0.00 0.00 0.00 3.02
2380 2461 4.099633 TCAGTCCATCATCAAAGAGTCCT 58.900 43.478 0.00 0.00 0.00 3.85
2519 2860 9.815306 ATTTATTAGTAGCTCTGAGGATGACTA 57.185 33.333 6.83 0.00 0.00 2.59
2523 2864 5.454062 AGTAGCTCTGAGGATGACTATTGT 58.546 41.667 6.83 0.00 0.00 2.71
2543 2884 5.347620 TGTGTTTGTGTAGTCTGTAACCT 57.652 39.130 0.00 0.00 0.00 3.50
2544 2885 6.468333 TGTGTTTGTGTAGTCTGTAACCTA 57.532 37.500 0.00 0.00 0.00 3.08
2545 2886 6.509656 TGTGTTTGTGTAGTCTGTAACCTAG 58.490 40.000 0.00 0.00 0.00 3.02
2635 2976 4.919168 CGCATTTGAACACATGATGACTTT 59.081 37.500 0.00 0.00 0.00 2.66
2671 3012 8.934507 ATATTACTTCTGTTACTGAAGTGCTC 57.065 34.615 32.91 0.00 46.60 4.26
2747 3090 4.286808 TCCTGTCATGGATGTTCTTTCAGA 59.713 41.667 0.00 0.00 0.00 3.27
2821 3164 8.697067 GCAATGATGATTTTTAAATCGATCTGG 58.303 33.333 0.00 12.65 46.01 3.86
2862 3205 4.764823 TGGTTTGTTTTCTGAGTTCTGTGT 59.235 37.500 0.00 0.00 0.00 3.72
2940 3288 8.855110 TGTTAATTTTCAGAGGCAGAAACATTA 58.145 29.630 0.26 5.56 34.94 1.90
2949 3297 6.037610 CAGAGGCAGAAACATTAACCATACTC 59.962 42.308 0.00 0.00 0.00 2.59
3017 3371 4.034742 ACATCACGGCGAACATAAAATACC 59.965 41.667 16.62 0.00 0.00 2.73
3040 3394 5.088739 CGTCAACACCTCAAAATCTATTGC 58.911 41.667 0.00 0.00 0.00 3.56
3051 3405 7.645340 CCTCAAAATCTATTGCGAATTTACAGG 59.355 37.037 0.00 0.00 0.00 4.00
3064 3418 6.349033 GCGAATTTACAGGGATAACAAGTGTT 60.349 38.462 1.75 1.75 41.73 3.32
3099 3453 6.049149 GGCATATTCTTACAGCACTACAGAA 58.951 40.000 0.00 0.00 0.00 3.02
3100 3454 6.708054 GGCATATTCTTACAGCACTACAGAAT 59.292 38.462 0.00 0.00 37.79 2.40
3101 3455 7.872993 GGCATATTCTTACAGCACTACAGAATA 59.127 37.037 0.00 0.00 39.57 1.75
3102 3456 9.429359 GCATATTCTTACAGCACTACAGAATAT 57.571 33.333 6.83 6.83 43.37 1.28
3147 3501 1.718757 GCGGCTTATCCAAGTGCCTG 61.719 60.000 0.00 0.00 42.90 4.85
3308 3663 0.678048 GGGATGGAGCTCACCAACAC 60.678 60.000 17.19 1.72 43.47 3.32
3351 3709 1.346062 TCTTCTTCTCCAGCTGCAGT 58.654 50.000 16.64 0.00 0.00 4.40
3352 3710 1.274728 TCTTCTTCTCCAGCTGCAGTC 59.725 52.381 16.64 7.83 0.00 3.51
3353 3711 0.322975 TTCTTCTCCAGCTGCAGTCC 59.677 55.000 16.64 0.00 0.00 3.85
3354 3712 0.543883 TCTTCTCCAGCTGCAGTCCT 60.544 55.000 16.64 1.18 0.00 3.85
3355 3713 0.324285 CTTCTCCAGCTGCAGTCCTT 59.676 55.000 16.64 0.00 0.00 3.36
3356 3714 0.035881 TTCTCCAGCTGCAGTCCTTG 59.964 55.000 16.64 8.89 0.00 3.61
3373 3731 3.590824 GCGCCTGCAGGTAATGTT 58.409 55.556 32.81 0.00 42.15 2.71
3374 3732 1.883021 GCGCCTGCAGGTAATGTTT 59.117 52.632 32.81 0.00 42.15 2.83
3375 3733 0.456653 GCGCCTGCAGGTAATGTTTG 60.457 55.000 32.81 13.76 42.15 2.93
3376 3734 0.456653 CGCCTGCAGGTAATGTTTGC 60.457 55.000 32.81 14.52 37.57 3.68
3377 3735 0.602562 GCCTGCAGGTAATGTTTGCA 59.397 50.000 32.81 0.00 44.81 4.08
3378 3736 1.669795 GCCTGCAGGTAATGTTTGCAC 60.670 52.381 32.81 8.69 42.41 4.57
3379 3737 1.067635 CCTGCAGGTAATGTTTGCACC 60.068 52.381 25.53 0.00 42.41 5.01
3380 3738 0.965439 TGCAGGTAATGTTTGCACCC 59.035 50.000 0.00 0.00 42.41 4.61
3381 3739 0.246360 GCAGGTAATGTTTGCACCCC 59.754 55.000 0.00 0.00 37.75 4.95
3382 3740 0.894835 CAGGTAATGTTTGCACCCCC 59.105 55.000 0.00 0.00 32.43 5.40
3383 3741 0.783850 AGGTAATGTTTGCACCCCCT 59.216 50.000 0.00 0.00 32.43 4.79
3384 3742 1.182667 GGTAATGTTTGCACCCCCTC 58.817 55.000 0.00 0.00 0.00 4.30
3385 3743 1.182667 GTAATGTTTGCACCCCCTCC 58.817 55.000 0.00 0.00 0.00 4.30
3386 3744 1.080638 TAATGTTTGCACCCCCTCCT 58.919 50.000 0.00 0.00 0.00 3.69
3387 3745 0.251787 AATGTTTGCACCCCCTCCTC 60.252 55.000 0.00 0.00 0.00 3.71
3388 3746 1.142688 ATGTTTGCACCCCCTCCTCT 61.143 55.000 0.00 0.00 0.00 3.69
3389 3747 1.002011 GTTTGCACCCCCTCCTCTC 60.002 63.158 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.103876 ACAACCCCTCCCTCCTTCTT 60.104 55.000 0.00 0.00 0.00 2.52
3 4 1.852626 CCACAACCCCTCCCTCCTT 60.853 63.158 0.00 0.00 0.00 3.36
4 5 2.204151 CCACAACCCCTCCCTCCT 60.204 66.667 0.00 0.00 0.00 3.69
5 6 4.048470 GCCACAACCCCTCCCTCC 62.048 72.222 0.00 0.00 0.00 4.30
6 7 4.410400 CGCCACAACCCCTCCCTC 62.410 72.222 0.00 0.00 0.00 4.30
23 24 4.875713 AATCCCATCGCCCCGCAC 62.876 66.667 0.00 0.00 0.00 5.34
24 25 4.873810 CAATCCCATCGCCCCGCA 62.874 66.667 0.00 0.00 0.00 5.69
26 27 3.872603 TCCAATCCCATCGCCCCG 61.873 66.667 0.00 0.00 0.00 5.73
27 28 2.203351 GTCCAATCCCATCGCCCC 60.203 66.667 0.00 0.00 0.00 5.80
28 29 2.203351 GGTCCAATCCCATCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
29 30 1.077068 TTGGTCCAATCCCATCGCC 60.077 57.895 0.00 0.00 0.00 5.54
30 31 1.103398 CCTTGGTCCAATCCCATCGC 61.103 60.000 4.34 0.00 0.00 4.58
31 32 0.255890 ACCTTGGTCCAATCCCATCG 59.744 55.000 4.34 0.00 0.00 3.84
32 33 1.767759 CACCTTGGTCCAATCCCATC 58.232 55.000 4.34 0.00 0.00 3.51
33 34 0.324645 GCACCTTGGTCCAATCCCAT 60.325 55.000 4.34 0.00 0.00 4.00
34 35 1.076549 GCACCTTGGTCCAATCCCA 59.923 57.895 4.34 0.00 0.00 4.37
35 36 0.251787 AAGCACCTTGGTCCAATCCC 60.252 55.000 4.34 0.00 0.00 3.85
36 37 1.546029 GAAAGCACCTTGGTCCAATCC 59.454 52.381 4.34 0.00 0.00 3.01
37 38 1.200020 CGAAAGCACCTTGGTCCAATC 59.800 52.381 4.34 0.00 0.00 2.67
38 39 1.202879 TCGAAAGCACCTTGGTCCAAT 60.203 47.619 4.34 0.00 0.00 3.16
39 40 0.181587 TCGAAAGCACCTTGGTCCAA 59.818 50.000 3.76 3.76 0.00 3.53
40 41 0.250295 CTCGAAAGCACCTTGGTCCA 60.250 55.000 0.00 0.00 0.00 4.02
41 42 0.955919 CCTCGAAAGCACCTTGGTCC 60.956 60.000 0.00 0.00 0.00 4.46
42 43 0.955919 CCCTCGAAAGCACCTTGGTC 60.956 60.000 0.00 0.00 0.00 4.02
43 44 1.073199 CCCTCGAAAGCACCTTGGT 59.927 57.895 0.00 0.00 0.00 3.67
44 45 2.335712 GCCCTCGAAAGCACCTTGG 61.336 63.158 1.61 0.00 0.00 3.61
45 46 0.962356 ATGCCCTCGAAAGCACCTTG 60.962 55.000 10.91 0.00 42.84 3.61
46 47 0.962356 CATGCCCTCGAAAGCACCTT 60.962 55.000 10.91 0.00 42.84 3.50
47 48 1.377725 CATGCCCTCGAAAGCACCT 60.378 57.895 10.91 0.00 42.84 4.00
48 49 2.409870 CCATGCCCTCGAAAGCACC 61.410 63.158 10.91 0.00 42.84 5.01
49 50 3.056313 GCCATGCCCTCGAAAGCAC 62.056 63.158 10.91 0.00 42.84 4.40
50 51 1.909459 TAGCCATGCCCTCGAAAGCA 61.909 55.000 11.07 11.07 44.45 3.91
51 52 1.153168 TAGCCATGCCCTCGAAAGC 60.153 57.895 0.00 0.00 0.00 3.51
52 53 0.815615 GGTAGCCATGCCCTCGAAAG 60.816 60.000 0.00 0.00 0.00 2.62
53 54 1.223487 GGTAGCCATGCCCTCGAAA 59.777 57.895 0.00 0.00 0.00 3.46
54 55 2.908015 GGTAGCCATGCCCTCGAA 59.092 61.111 0.00 0.00 0.00 3.71
62 63 2.203070 GGAGCGTGGGTAGCCATG 60.203 66.667 25.80 25.80 34.64 3.66
63 64 3.480133 GGGAGCGTGGGTAGCCAT 61.480 66.667 18.29 0.02 34.64 4.40
119 120 4.980805 TTCGAGGTGCGGGTGTGC 62.981 66.667 0.00 0.00 41.33 4.57
120 121 2.280524 TTTCGAGGTGCGGGTGTG 60.281 61.111 0.00 0.00 41.33 3.82
121 122 2.280592 GTTTCGAGGTGCGGGTGT 60.281 61.111 0.00 0.00 41.33 4.16
122 123 2.280524 TGTTTCGAGGTGCGGGTG 60.281 61.111 0.00 0.00 41.33 4.61
123 124 2.030562 CTGTTTCGAGGTGCGGGT 59.969 61.111 0.00 0.00 41.33 5.28
124 125 3.423154 GCTGTTTCGAGGTGCGGG 61.423 66.667 0.00 0.00 41.33 6.13
125 126 0.669318 TAAGCTGTTTCGAGGTGCGG 60.669 55.000 0.00 0.00 41.33 5.69
126 127 0.438830 GTAAGCTGTTTCGAGGTGCG 59.561 55.000 0.00 0.00 42.69 5.34
127 128 0.796927 GGTAAGCTGTTTCGAGGTGC 59.203 55.000 0.00 0.00 0.00 5.01
128 129 1.270625 TGGGTAAGCTGTTTCGAGGTG 60.271 52.381 0.00 0.00 0.00 4.00
129 130 1.002087 CTGGGTAAGCTGTTTCGAGGT 59.998 52.381 0.00 0.00 0.00 3.85
130 131 1.726853 CTGGGTAAGCTGTTTCGAGG 58.273 55.000 0.00 0.00 0.00 4.63
150 151 2.203280 TTGTCCCGTGCCTGTTGG 60.203 61.111 0.00 0.00 0.00 3.77
151 152 1.227823 TCTTGTCCCGTGCCTGTTG 60.228 57.895 0.00 0.00 0.00 3.33
152 153 1.071471 CTCTTGTCCCGTGCCTGTT 59.929 57.895 0.00 0.00 0.00 3.16
153 154 2.743718 CTCTTGTCCCGTGCCTGT 59.256 61.111 0.00 0.00 0.00 4.00
154 155 2.743928 GCTCTTGTCCCGTGCCTG 60.744 66.667 0.00 0.00 0.00 4.85
155 156 3.241530 TGCTCTTGTCCCGTGCCT 61.242 61.111 0.00 0.00 0.00 4.75
156 157 3.050275 GTGCTCTTGTCCCGTGCC 61.050 66.667 0.00 0.00 0.00 5.01
157 158 2.280797 TGTGCTCTTGTCCCGTGC 60.281 61.111 0.00 0.00 0.00 5.34
158 159 1.961277 GGTGTGCTCTTGTCCCGTG 60.961 63.158 0.00 0.00 0.00 4.94
159 160 2.426023 GGTGTGCTCTTGTCCCGT 59.574 61.111 0.00 0.00 0.00 5.28
160 161 2.358737 GGGTGTGCTCTTGTCCCG 60.359 66.667 0.00 0.00 0.00 5.14
161 162 0.678048 GATGGGTGTGCTCTTGTCCC 60.678 60.000 0.00 0.00 38.68 4.46
162 163 0.036732 TGATGGGTGTGCTCTTGTCC 59.963 55.000 0.00 0.00 0.00 4.02
163 164 2.119801 ATGATGGGTGTGCTCTTGTC 57.880 50.000 0.00 0.00 0.00 3.18
164 165 2.165167 CAATGATGGGTGTGCTCTTGT 58.835 47.619 0.00 0.00 0.00 3.16
165 166 1.475280 CCAATGATGGGTGTGCTCTTG 59.525 52.381 0.00 0.00 43.51 3.02
166 167 1.843368 CCAATGATGGGTGTGCTCTT 58.157 50.000 0.00 0.00 43.51 2.85
167 168 3.583054 CCAATGATGGGTGTGCTCT 57.417 52.632 0.00 0.00 43.51 4.09
177 178 3.880047 AACTTCACATGGCCAATGATG 57.120 42.857 23.92 23.92 38.72 3.07
178 179 4.771577 TGTTAACTTCACATGGCCAATGAT 59.228 37.500 20.51 10.83 38.72 2.45
179 180 4.022416 GTGTTAACTTCACATGGCCAATGA 60.022 41.667 10.96 14.82 38.72 2.57
180 181 4.236935 GTGTTAACTTCACATGGCCAATG 58.763 43.478 10.96 12.30 42.48 2.82
181 182 3.057596 CGTGTTAACTTCACATGGCCAAT 60.058 43.478 10.96 0.00 35.79 3.16
182 183 2.292016 CGTGTTAACTTCACATGGCCAA 59.708 45.455 10.96 0.00 35.79 4.52
183 184 1.876799 CGTGTTAACTTCACATGGCCA 59.123 47.619 8.56 8.56 35.79 5.36
184 185 1.877443 ACGTGTTAACTTCACATGGCC 59.123 47.619 7.22 0.00 35.74 5.36
185 186 2.350388 CCACGTGTTAACTTCACATGGC 60.350 50.000 15.65 0.00 41.07 4.40
186 187 3.536158 CCACGTGTTAACTTCACATGG 57.464 47.619 15.65 1.33 41.45 3.66
187 188 3.558006 TGACCACGTGTTAACTTCACATG 59.442 43.478 15.65 0.00 37.22 3.21
188 189 3.799366 TGACCACGTGTTAACTTCACAT 58.201 40.909 15.65 0.00 35.79 3.21
189 190 3.248495 TGACCACGTGTTAACTTCACA 57.752 42.857 15.65 0.00 35.79 3.58
190 191 4.603231 TTTGACCACGTGTTAACTTCAC 57.397 40.909 15.65 0.00 0.00 3.18
191 192 4.454847 TGTTTTGACCACGTGTTAACTTCA 59.545 37.500 15.65 4.18 0.00 3.02
192 193 4.972201 TGTTTTGACCACGTGTTAACTTC 58.028 39.130 15.65 1.59 0.00 3.01
193 194 5.373981 TTGTTTTGACCACGTGTTAACTT 57.626 34.783 15.65 0.00 0.00 2.66
194 195 4.673320 GCTTGTTTTGACCACGTGTTAACT 60.673 41.667 15.65 0.00 0.00 2.24
195 196 3.544682 GCTTGTTTTGACCACGTGTTAAC 59.455 43.478 15.65 10.83 0.00 2.01
196 197 3.190744 TGCTTGTTTTGACCACGTGTTAA 59.809 39.130 15.65 3.55 0.00 2.01
197 198 2.747989 TGCTTGTTTTGACCACGTGTTA 59.252 40.909 15.65 0.00 0.00 2.41
198 199 1.542030 TGCTTGTTTTGACCACGTGTT 59.458 42.857 15.65 0.00 0.00 3.32
199 200 1.132262 CTGCTTGTTTTGACCACGTGT 59.868 47.619 15.65 2.26 0.00 4.49
200 201 1.826327 CTGCTTGTTTTGACCACGTG 58.174 50.000 9.08 9.08 0.00 4.49
201 202 0.100503 GCTGCTTGTTTTGACCACGT 59.899 50.000 0.00 0.00 0.00 4.49
202 203 0.929824 CGCTGCTTGTTTTGACCACG 60.930 55.000 0.00 0.00 0.00 4.94
203 204 0.380378 TCGCTGCTTGTTTTGACCAC 59.620 50.000 0.00 0.00 0.00 4.16
204 205 0.662619 CTCGCTGCTTGTTTTGACCA 59.337 50.000 0.00 0.00 0.00 4.02
205 206 0.944386 TCTCGCTGCTTGTTTTGACC 59.056 50.000 0.00 0.00 0.00 4.02
206 207 1.661460 GCTCTCGCTGCTTGTTTTGAC 60.661 52.381 0.00 0.00 0.00 3.18
207 208 0.588252 GCTCTCGCTGCTTGTTTTGA 59.412 50.000 0.00 0.00 0.00 2.69
208 209 0.308684 TGCTCTCGCTGCTTGTTTTG 59.691 50.000 0.00 0.00 36.97 2.44
209 210 1.024271 TTGCTCTCGCTGCTTGTTTT 58.976 45.000 0.00 0.00 36.97 2.43
210 211 0.308993 GTTGCTCTCGCTGCTTGTTT 59.691 50.000 0.00 0.00 36.97 2.83
211 212 1.835483 CGTTGCTCTCGCTGCTTGTT 61.835 55.000 0.00 0.00 36.97 2.83
212 213 2.313172 CGTTGCTCTCGCTGCTTGT 61.313 57.895 0.00 0.00 36.97 3.16
213 214 1.953353 CTCGTTGCTCTCGCTGCTTG 61.953 60.000 0.00 0.00 36.97 4.01
214 215 1.735920 CTCGTTGCTCTCGCTGCTT 60.736 57.895 0.00 0.00 36.97 3.91
215 216 2.126149 CTCGTTGCTCTCGCTGCT 60.126 61.111 0.00 0.00 36.97 4.24
216 217 3.847709 GCTCGTTGCTCTCGCTGC 61.848 66.667 0.00 0.00 38.95 5.25
217 218 1.750572 GATGCTCGTTGCTCTCGCTG 61.751 60.000 5.00 0.00 43.37 5.18
218 219 1.518133 GATGCTCGTTGCTCTCGCT 60.518 57.895 5.00 0.00 43.37 4.93
219 220 0.248661 TAGATGCTCGTTGCTCTCGC 60.249 55.000 5.00 0.00 43.37 5.03
220 221 1.849219 GTTAGATGCTCGTTGCTCTCG 59.151 52.381 5.00 0.00 43.37 4.04
221 222 1.849219 CGTTAGATGCTCGTTGCTCTC 59.151 52.381 5.00 2.77 43.37 3.20
222 223 1.469940 CCGTTAGATGCTCGTTGCTCT 60.470 52.381 5.00 7.26 43.37 4.09
223 224 0.924090 CCGTTAGATGCTCGTTGCTC 59.076 55.000 5.00 1.39 43.37 4.26
224 225 1.084370 GCCGTTAGATGCTCGTTGCT 61.084 55.000 5.00 0.00 43.37 3.91
225 226 1.084370 AGCCGTTAGATGCTCGTTGC 61.084 55.000 0.00 0.00 43.25 4.17
226 227 0.924090 GAGCCGTTAGATGCTCGTTG 59.076 55.000 0.00 0.00 43.94 4.10
227 228 3.347411 GAGCCGTTAGATGCTCGTT 57.653 52.632 0.00 0.00 43.94 3.85
231 232 1.067142 TCGTTTGAGCCGTTAGATGCT 60.067 47.619 0.00 0.00 41.42 3.79
232 233 1.355971 TCGTTTGAGCCGTTAGATGC 58.644 50.000 0.00 0.00 0.00 3.91
233 234 2.222819 GCTTCGTTTGAGCCGTTAGATG 60.223 50.000 0.00 0.00 0.00 2.90
234 235 2.000447 GCTTCGTTTGAGCCGTTAGAT 59.000 47.619 0.00 0.00 0.00 1.98
235 236 1.425412 GCTTCGTTTGAGCCGTTAGA 58.575 50.000 0.00 0.00 0.00 2.10
236 237 0.442699 GGCTTCGTTTGAGCCGTTAG 59.557 55.000 0.00 0.00 39.06 2.34
237 238 2.535588 GGCTTCGTTTGAGCCGTTA 58.464 52.632 0.00 0.00 39.06 3.18
238 239 3.340789 GGCTTCGTTTGAGCCGTT 58.659 55.556 0.00 0.00 39.06 4.44
242 243 1.858458 GGTTTTTGGCTTCGTTTGAGC 59.142 47.619 0.00 0.00 0.00 4.26
243 244 3.157932 TGGTTTTTGGCTTCGTTTGAG 57.842 42.857 0.00 0.00 0.00 3.02
244 245 3.594603 TTGGTTTTTGGCTTCGTTTGA 57.405 38.095 0.00 0.00 0.00 2.69
245 246 3.682377 AGTTTGGTTTTTGGCTTCGTTTG 59.318 39.130 0.00 0.00 0.00 2.93
246 247 3.682377 CAGTTTGGTTTTTGGCTTCGTTT 59.318 39.130 0.00 0.00 0.00 3.60
247 248 3.056465 TCAGTTTGGTTTTTGGCTTCGTT 60.056 39.130 0.00 0.00 0.00 3.85
248 249 2.494073 TCAGTTTGGTTTTTGGCTTCGT 59.506 40.909 0.00 0.00 0.00 3.85
249 250 2.857748 GTCAGTTTGGTTTTTGGCTTCG 59.142 45.455 0.00 0.00 0.00 3.79
250 251 3.194861 GGTCAGTTTGGTTTTTGGCTTC 58.805 45.455 0.00 0.00 0.00 3.86
251 252 2.569404 TGGTCAGTTTGGTTTTTGGCTT 59.431 40.909 0.00 0.00 0.00 4.35
252 253 2.093711 GTGGTCAGTTTGGTTTTTGGCT 60.094 45.455 0.00 0.00 0.00 4.75
253 254 2.276201 GTGGTCAGTTTGGTTTTTGGC 58.724 47.619 0.00 0.00 0.00 4.52
254 255 2.164624 TCGTGGTCAGTTTGGTTTTTGG 59.835 45.455 0.00 0.00 0.00 3.28
255 256 3.495670 TCGTGGTCAGTTTGGTTTTTG 57.504 42.857 0.00 0.00 0.00 2.44
256 257 3.067601 GGATCGTGGTCAGTTTGGTTTTT 59.932 43.478 0.00 0.00 0.00 1.94
257 258 2.621526 GGATCGTGGTCAGTTTGGTTTT 59.378 45.455 0.00 0.00 0.00 2.43
258 259 2.227194 GGATCGTGGTCAGTTTGGTTT 58.773 47.619 0.00 0.00 0.00 3.27
259 260 1.142060 TGGATCGTGGTCAGTTTGGTT 59.858 47.619 0.00 0.00 0.00 3.67
260 261 0.762418 TGGATCGTGGTCAGTTTGGT 59.238 50.000 0.00 0.00 0.00 3.67
261 262 1.890876 TTGGATCGTGGTCAGTTTGG 58.109 50.000 0.00 0.00 0.00 3.28
262 263 2.162208 CCATTGGATCGTGGTCAGTTTG 59.838 50.000 0.00 0.00 0.00 2.93
263 264 2.436417 CCATTGGATCGTGGTCAGTTT 58.564 47.619 0.00 0.00 0.00 2.66
264 265 1.950484 GCCATTGGATCGTGGTCAGTT 60.950 52.381 6.95 0.00 37.81 3.16
265 266 0.392998 GCCATTGGATCGTGGTCAGT 60.393 55.000 6.95 0.00 37.81 3.41
266 267 1.097547 GGCCATTGGATCGTGGTCAG 61.098 60.000 6.95 0.00 39.87 3.51
267 268 1.077787 GGCCATTGGATCGTGGTCA 60.078 57.895 6.95 0.00 39.87 4.02
268 269 0.679640 TTGGCCATTGGATCGTGGTC 60.680 55.000 6.09 7.77 40.51 4.02
269 270 0.965363 GTTGGCCATTGGATCGTGGT 60.965 55.000 6.09 0.00 37.81 4.16
270 271 1.809207 GTTGGCCATTGGATCGTGG 59.191 57.895 6.09 6.15 38.55 4.94
271 272 1.024046 TCGTTGGCCATTGGATCGTG 61.024 55.000 6.09 0.00 0.00 4.35
272 273 0.322098 TTCGTTGGCCATTGGATCGT 60.322 50.000 6.09 0.00 0.00 3.73
273 274 0.378257 CTTCGTTGGCCATTGGATCG 59.622 55.000 6.09 5.47 0.00 3.69
274 275 0.101219 GCTTCGTTGGCCATTGGATC 59.899 55.000 6.09 0.00 0.00 3.36
275 276 0.323725 AGCTTCGTTGGCCATTGGAT 60.324 50.000 6.09 0.00 0.00 3.41
276 277 0.539438 AAGCTTCGTTGGCCATTGGA 60.539 50.000 6.09 0.65 0.00 3.53
277 278 0.388907 CAAGCTTCGTTGGCCATTGG 60.389 55.000 6.09 0.00 0.00 3.16
278 279 1.010419 GCAAGCTTCGTTGGCCATTG 61.010 55.000 6.09 7.53 0.00 2.82
279 280 1.290009 GCAAGCTTCGTTGGCCATT 59.710 52.632 6.09 0.00 0.00 3.16
280 281 2.639327 GGCAAGCTTCGTTGGCCAT 61.639 57.895 17.44 0.00 45.03 4.40
281 282 3.294493 GGCAAGCTTCGTTGGCCA 61.294 61.111 17.44 0.00 45.03 5.36
284 285 1.135315 CGATGGCAAGCTTCGTTGG 59.865 57.895 0.00 0.00 0.00 3.77
285 286 0.095935 CTCGATGGCAAGCTTCGTTG 59.904 55.000 7.95 0.00 34.60 4.10
286 287 1.021390 CCTCGATGGCAAGCTTCGTT 61.021 55.000 7.95 0.00 34.60 3.85
287 288 1.448540 CCTCGATGGCAAGCTTCGT 60.449 57.895 7.95 0.00 34.60 3.85
288 289 2.176273 CCCTCGATGGCAAGCTTCG 61.176 63.158 0.00 0.00 0.00 3.79
289 290 0.392998 TTCCCTCGATGGCAAGCTTC 60.393 55.000 0.00 0.00 0.00 3.86
290 291 0.678048 GTTCCCTCGATGGCAAGCTT 60.678 55.000 1.18 0.00 0.00 3.74
291 292 1.078143 GTTCCCTCGATGGCAAGCT 60.078 57.895 1.18 0.00 0.00 3.74
292 293 2.464459 CGTTCCCTCGATGGCAAGC 61.464 63.158 1.18 0.00 0.00 4.01
293 294 2.464459 GCGTTCCCTCGATGGCAAG 61.464 63.158 1.18 0.00 0.00 4.01
294 295 2.435938 GCGTTCCCTCGATGGCAA 60.436 61.111 1.18 0.00 0.00 4.52
295 296 4.467084 GGCGTTCCCTCGATGGCA 62.467 66.667 1.18 0.00 0.00 4.92
296 297 2.306255 TAAGGCGTTCCCTCGATGGC 62.306 60.000 1.18 0.00 45.62 4.40
297 298 0.249489 CTAAGGCGTTCCCTCGATGG 60.249 60.000 0.00 0.00 45.62 3.51
298 299 0.249489 CCTAAGGCGTTCCCTCGATG 60.249 60.000 0.00 0.00 45.62 3.84
299 300 0.396695 TCCTAAGGCGTTCCCTCGAT 60.397 55.000 0.00 0.00 45.62 3.59
300 301 1.000521 TCCTAAGGCGTTCCCTCGA 60.001 57.895 0.00 0.00 45.62 4.04
301 302 1.437986 CTCCTAAGGCGTTCCCTCG 59.562 63.158 0.00 0.00 45.62 4.63
302 303 1.144276 GCTCCTAAGGCGTTCCCTC 59.856 63.158 0.00 0.00 45.62 4.30
304 305 2.202892 CGCTCCTAAGGCGTTCCC 60.203 66.667 0.00 0.00 46.37 3.97
310 311 1.815840 GCCAACTCGCTCCTAAGGC 60.816 63.158 0.00 0.00 0.00 4.35
311 312 1.067821 CTAGCCAACTCGCTCCTAAGG 59.932 57.143 0.00 0.00 40.39 2.69
312 313 1.537135 GCTAGCCAACTCGCTCCTAAG 60.537 57.143 2.29 0.00 40.39 2.18
313 314 0.460311 GCTAGCCAACTCGCTCCTAA 59.540 55.000 2.29 0.00 40.39 2.69
314 315 0.395862 AGCTAGCCAACTCGCTCCTA 60.396 55.000 12.13 0.00 40.75 2.94
315 316 1.261238 AAGCTAGCCAACTCGCTCCT 61.261 55.000 12.13 0.00 43.67 3.69
316 317 0.808060 GAAGCTAGCCAACTCGCTCC 60.808 60.000 12.13 0.00 43.67 4.70
317 318 0.174617 AGAAGCTAGCCAACTCGCTC 59.825 55.000 12.13 0.00 43.67 5.03
318 319 0.610687 AAGAAGCTAGCCAACTCGCT 59.389 50.000 12.13 0.00 46.22 4.93
319 320 1.443802 AAAGAAGCTAGCCAACTCGC 58.556 50.000 12.13 0.00 34.88 5.03
337 338 4.386424 CCCCCACCCCATTTAAAACAAAAA 60.386 41.667 0.00 0.00 0.00 1.94
338 339 3.138468 CCCCCACCCCATTTAAAACAAAA 59.862 43.478 0.00 0.00 0.00 2.44
339 340 2.711547 CCCCCACCCCATTTAAAACAAA 59.288 45.455 0.00 0.00 0.00 2.83
340 341 2.090153 TCCCCCACCCCATTTAAAACAA 60.090 45.455 0.00 0.00 0.00 2.83
341 342 1.508185 TCCCCCACCCCATTTAAAACA 59.492 47.619 0.00 0.00 0.00 2.83
342 343 2.328992 TCCCCCACCCCATTTAAAAC 57.671 50.000 0.00 0.00 0.00 2.43
343 344 2.980379 GTTTCCCCCACCCCATTTAAAA 59.020 45.455 0.00 0.00 0.00 1.52
344 345 2.622210 GTTTCCCCCACCCCATTTAAA 58.378 47.619 0.00 0.00 0.00 1.52
345 346 1.203326 GGTTTCCCCCACCCCATTTAA 60.203 52.381 0.00 0.00 0.00 1.52
346 347 0.414231 GGTTTCCCCCACCCCATTTA 59.586 55.000 0.00 0.00 0.00 1.40
347 348 1.159905 GGTTTCCCCCACCCCATTT 59.840 57.895 0.00 0.00 0.00 2.32
348 349 2.866378 GGTTTCCCCCACCCCATT 59.134 61.111 0.00 0.00 0.00 3.16
399 400 9.181061 GGCCTCTTTGGTTTACAGTAATTTATA 57.819 33.333 0.00 0.00 38.35 0.98
400 401 7.893833 AGGCCTCTTTGGTTTACAGTAATTTAT 59.106 33.333 0.00 0.00 38.35 1.40
401 402 7.235804 AGGCCTCTTTGGTTTACAGTAATTTA 58.764 34.615 0.00 0.00 38.35 1.40
402 403 6.075315 AGGCCTCTTTGGTTTACAGTAATTT 58.925 36.000 0.00 0.00 38.35 1.82
403 404 5.641155 AGGCCTCTTTGGTTTACAGTAATT 58.359 37.500 0.00 0.00 38.35 1.40
404 405 5.254115 GAGGCCTCTTTGGTTTACAGTAAT 58.746 41.667 26.25 0.00 38.35 1.89
405 406 4.506095 GGAGGCCTCTTTGGTTTACAGTAA 60.506 45.833 31.36 0.00 38.35 2.24
406 407 3.008704 GGAGGCCTCTTTGGTTTACAGTA 59.991 47.826 31.36 0.00 38.35 2.74
407 408 2.224793 GGAGGCCTCTTTGGTTTACAGT 60.225 50.000 31.36 0.00 38.35 3.55
408 409 2.437413 GGAGGCCTCTTTGGTTTACAG 58.563 52.381 31.36 0.00 38.35 2.74
409 410 1.074889 GGGAGGCCTCTTTGGTTTACA 59.925 52.381 31.36 0.00 38.35 2.41
410 411 1.354705 AGGGAGGCCTCTTTGGTTTAC 59.645 52.381 31.36 11.76 38.35 2.01
411 412 1.633945 GAGGGAGGCCTCTTTGGTTTA 59.366 52.381 31.36 0.00 38.35 2.01
412 413 0.405973 GAGGGAGGCCTCTTTGGTTT 59.594 55.000 31.36 9.87 38.35 3.27
413 414 1.842381 CGAGGGAGGCCTCTTTGGTT 61.842 60.000 31.36 11.24 38.35 3.67
414 415 2.294078 CGAGGGAGGCCTCTTTGGT 61.294 63.158 31.36 12.15 38.35 3.67
415 416 1.553690 TTCGAGGGAGGCCTCTTTGG 61.554 60.000 31.36 19.91 34.91 3.28
416 417 0.324943 TTTCGAGGGAGGCCTCTTTG 59.675 55.000 31.36 22.11 34.91 2.77
417 418 1.064825 TTTTCGAGGGAGGCCTCTTT 58.935 50.000 31.36 19.79 34.91 2.52
418 419 1.064825 TTTTTCGAGGGAGGCCTCTT 58.935 50.000 31.36 20.16 34.91 2.85
419 420 2.773458 TTTTTCGAGGGAGGCCTCT 58.227 52.632 31.36 13.94 34.91 3.69
435 436 5.204292 AGGCCTCTTTGTCTTCTTCTTTTT 58.796 37.500 0.00 0.00 0.00 1.94
436 437 4.797743 AGGCCTCTTTGTCTTCTTCTTTT 58.202 39.130 0.00 0.00 0.00 2.27
437 438 4.393834 GAGGCCTCTTTGTCTTCTTCTTT 58.606 43.478 26.25 0.00 0.00 2.52
438 439 3.556004 CGAGGCCTCTTTGTCTTCTTCTT 60.556 47.826 29.73 0.00 0.00 2.52
439 440 2.028567 CGAGGCCTCTTTGTCTTCTTCT 60.029 50.000 29.73 0.00 0.00 2.85
440 441 2.342179 CGAGGCCTCTTTGTCTTCTTC 58.658 52.381 29.73 0.08 0.00 2.87
441 442 1.609320 GCGAGGCCTCTTTGTCTTCTT 60.609 52.381 29.73 0.00 0.00 2.52
442 443 0.036858 GCGAGGCCTCTTTGTCTTCT 60.037 55.000 29.73 0.00 0.00 2.85
443 444 1.355066 CGCGAGGCCTCTTTGTCTTC 61.355 60.000 29.73 1.67 0.00 2.87
444 445 1.374758 CGCGAGGCCTCTTTGTCTT 60.375 57.895 29.73 0.00 0.00 3.01
445 446 2.262915 CGCGAGGCCTCTTTGTCT 59.737 61.111 29.73 0.00 0.00 3.41
457 458 1.425428 GCAACTCAATTCCCGCGAG 59.575 57.895 8.23 0.00 0.00 5.03
458 459 2.387445 CGCAACTCAATTCCCGCGA 61.387 57.895 8.23 0.00 45.17 5.87
459 460 2.098298 CGCAACTCAATTCCCGCG 59.902 61.111 0.00 0.00 36.47 6.46
460 461 0.800012 TAACGCAACTCAATTCCCGC 59.200 50.000 0.00 0.00 0.00 6.13
461 462 2.418628 ACATAACGCAACTCAATTCCCG 59.581 45.455 0.00 0.00 0.00 5.14
462 463 4.412207 GAACATAACGCAACTCAATTCCC 58.588 43.478 0.00 0.00 0.00 3.97
463 464 4.083003 TGGAACATAACGCAACTCAATTCC 60.083 41.667 0.00 0.00 34.85 3.01
464 465 5.041951 TGGAACATAACGCAACTCAATTC 57.958 39.130 0.00 0.00 0.00 2.17
481 482 9.809096 AGAGAAAGAAAGAAAGAAAAATGGAAC 57.191 29.630 0.00 0.00 0.00 3.62
482 483 9.807649 CAGAGAAAGAAAGAAAGAAAAATGGAA 57.192 29.630 0.00 0.00 0.00 3.53
483 484 8.971073 ACAGAGAAAGAAAGAAAGAAAAATGGA 58.029 29.630 0.00 0.00 0.00 3.41
490 491 9.627123 TGGAATTACAGAGAAAGAAAGAAAGAA 57.373 29.630 0.00 0.00 0.00 2.52
491 492 9.799106 ATGGAATTACAGAGAAAGAAAGAAAGA 57.201 29.630 0.00 0.00 0.00 2.52
509 510 9.528018 GGCAATCGAATTTCTAAAATGGAATTA 57.472 29.630 0.00 0.00 33.67 1.40
510 511 7.495606 GGGCAATCGAATTTCTAAAATGGAATT 59.504 33.333 0.00 0.00 38.98 2.17
511 512 6.986231 GGGCAATCGAATTTCTAAAATGGAAT 59.014 34.615 0.00 0.00 0.00 3.01
512 513 6.154363 AGGGCAATCGAATTTCTAAAATGGAA 59.846 34.615 0.00 0.00 0.00 3.53
513 514 5.656416 AGGGCAATCGAATTTCTAAAATGGA 59.344 36.000 0.00 0.00 0.00 3.41
514 515 5.750067 CAGGGCAATCGAATTTCTAAAATGG 59.250 40.000 0.00 0.00 0.00 3.16
515 516 5.232838 GCAGGGCAATCGAATTTCTAAAATG 59.767 40.000 0.00 0.00 0.00 2.32
516 517 5.127682 AGCAGGGCAATCGAATTTCTAAAAT 59.872 36.000 0.00 0.00 0.00 1.82
517 518 4.462483 AGCAGGGCAATCGAATTTCTAAAA 59.538 37.500 0.00 0.00 0.00 1.52
518 519 4.016444 AGCAGGGCAATCGAATTTCTAAA 58.984 39.130 0.00 0.00 0.00 1.85
519 520 3.378112 CAGCAGGGCAATCGAATTTCTAA 59.622 43.478 0.00 0.00 0.00 2.10
520 521 2.945008 CAGCAGGGCAATCGAATTTCTA 59.055 45.455 0.00 0.00 0.00 2.10
521 522 1.747355 CAGCAGGGCAATCGAATTTCT 59.253 47.619 0.00 0.00 0.00 2.52
522 523 1.800286 GCAGCAGGGCAATCGAATTTC 60.800 52.381 0.00 0.00 0.00 2.17
523 524 0.174162 GCAGCAGGGCAATCGAATTT 59.826 50.000 0.00 0.00 0.00 1.82
524 525 0.966875 TGCAGCAGGGCAATCGAATT 60.967 50.000 0.00 0.00 41.65 2.17
525 526 1.378911 TGCAGCAGGGCAATCGAAT 60.379 52.632 0.00 0.00 41.65 3.34
526 527 2.033911 TGCAGCAGGGCAATCGAA 59.966 55.556 0.00 0.00 41.65 3.71
532 533 2.628696 CGTCATTTGCAGCAGGGCA 61.629 57.895 0.00 0.00 43.19 5.36
533 534 2.180017 CGTCATTTGCAGCAGGGC 59.820 61.111 0.00 0.00 0.00 5.19
534 535 1.243342 TTCCGTCATTTGCAGCAGGG 61.243 55.000 0.00 0.00 0.00 4.45
581 582 2.167861 GTCGACGCAGAGGGAATGC 61.168 63.158 0.00 0.00 40.35 3.56
594 595 4.612412 TGGTTGGTGGCCGTCGAC 62.612 66.667 5.18 5.18 0.00 4.20
616 617 0.336737 GGAGGTGAGAGGAGGAAGGA 59.663 60.000 0.00 0.00 0.00 3.36
637 638 4.854784 TCGCCGCGTGATCTGCTC 62.855 66.667 13.39 1.00 0.00 4.26
1356 1357 3.979911 AGAATGAGGAGCAGAGAGAAGA 58.020 45.455 0.00 0.00 0.00 2.87
1405 1416 4.836125 AAACTGTTACTGGCAGATGTTG 57.164 40.909 23.66 10.41 37.40 3.33
1406 1417 6.546034 AGTTAAAACTGTTACTGGCAGATGTT 59.454 34.615 23.66 14.06 37.98 2.71
1465 1476 0.916086 ATCCGGAAAGCCCACACATA 59.084 50.000 9.01 0.00 34.14 2.29
1485 1496 5.768317 ACTACCAAATTCACATTTCGTTGG 58.232 37.500 0.00 0.00 41.06 3.77
1502 1513 9.661563 CAATGGAAACTAAATACTGTACTACCA 57.338 33.333 0.00 0.00 0.00 3.25
1506 1517 9.975218 ATTCCAATGGAAACTAAATACTGTACT 57.025 29.630 19.57 0.00 45.41 2.73
1509 1520 9.975218 ACTATTCCAATGGAAACTAAATACTGT 57.025 29.630 19.57 0.15 45.41 3.55
1551 1567 5.997746 TGTCAAGTTTCAAATCTGGTAGGAG 59.002 40.000 0.00 0.00 0.00 3.69
1588 1605 7.941790 TGATGGGCAATAATTATACTGCTAACA 59.058 33.333 17.49 14.73 35.13 2.41
1916 1997 4.828387 AGCCGGTTCCTAATTAACAACAAA 59.172 37.500 1.90 0.00 0.00 2.83
2002 2083 2.238646 CTGCTTGATACCCTTACCCACA 59.761 50.000 0.00 0.00 0.00 4.17
2035 2116 2.749621 CTGTTCCAATAACTCTGGGTGC 59.250 50.000 0.00 0.00 34.46 5.01
2065 2146 1.225854 CGCTGCTTCAAACGCTAGC 60.226 57.895 4.06 4.06 35.50 3.42
2071 2152 1.396301 CTCCAGATCGCTGCTTCAAAC 59.604 52.381 0.00 0.00 40.91 2.93
2136 2217 2.167487 GGTTTCCAGTTGCCAACAAAGA 59.833 45.455 10.69 0.26 37.58 2.52
2361 2442 4.081198 AGTCAGGACTCTTTGATGATGGAC 60.081 45.833 0.00 0.00 36.92 4.02
2380 2461 2.477845 TGCAGCTTGCTTATGAGTCA 57.522 45.000 0.00 0.00 45.31 3.41
2514 2855 6.578944 ACAGACTACACAAACACAATAGTCA 58.421 36.000 11.21 0.00 42.72 3.41
2519 2860 6.354130 AGGTTACAGACTACACAAACACAAT 58.646 36.000 0.00 0.00 0.00 2.71
2523 2864 6.720112 ACTAGGTTACAGACTACACAAACA 57.280 37.500 0.00 0.00 0.00 2.83
2552 2893 1.475682 AGAGAAGGTTACGGGCTTACG 59.524 52.381 0.00 0.00 40.31 3.18
2663 3004 6.018994 ACGAATTATCAATTACCGAGCACTTC 60.019 38.462 0.00 0.00 0.00 3.01
2666 3007 5.609696 CGACGAATTATCAATTACCGAGCAC 60.610 44.000 0.00 0.00 0.00 4.40
2667 3008 4.443063 CGACGAATTATCAATTACCGAGCA 59.557 41.667 0.00 0.00 0.00 4.26
2668 3009 4.663389 GCGACGAATTATCAATTACCGAGC 60.663 45.833 0.00 0.00 0.00 5.03
2669 3010 4.143389 GGCGACGAATTATCAATTACCGAG 60.143 45.833 0.00 0.00 0.00 4.63
2670 3011 3.737266 GGCGACGAATTATCAATTACCGA 59.263 43.478 0.00 0.00 0.00 4.69
2671 3012 3.120786 GGGCGACGAATTATCAATTACCG 60.121 47.826 0.00 0.00 0.00 4.02
2821 3164 1.407989 CCAAGGCAAGATCTCTCCACC 60.408 57.143 13.71 4.25 0.00 4.61
2880 3225 4.843516 ACCCCAAAATAGAGAAAATGCCAA 59.156 37.500 0.00 0.00 0.00 4.52
2949 3297 5.240891 CCATATGTCTGCCTACCATAACAG 58.759 45.833 1.24 0.00 0.00 3.16
2960 3312 1.531423 CATGCTCCCATATGTCTGCC 58.469 55.000 1.24 0.00 0.00 4.85
2961 3313 0.879765 GCATGCTCCCATATGTCTGC 59.120 55.000 11.37 3.33 0.00 4.26
3017 3371 5.088739 GCAATAGATTTTGAGGTGTTGACG 58.911 41.667 0.00 0.00 0.00 4.35
3040 3394 6.737254 ACACTTGTTATCCCTGTAAATTCG 57.263 37.500 0.00 0.00 0.00 3.34
3051 3405 5.305585 TCTGAACTCCAACACTTGTTATCC 58.694 41.667 0.00 0.00 36.32 2.59
3064 3418 5.425217 TGTAAGAATATGCCTCTGAACTCCA 59.575 40.000 0.00 0.00 0.00 3.86
3100 3454 9.782900 TCAGTGGTAAATATCCATCCATCTATA 57.217 33.333 0.00 0.00 37.30 1.31
3101 3455 8.685257 TCAGTGGTAAATATCCATCCATCTAT 57.315 34.615 0.00 0.00 37.30 1.98
3102 3456 8.504811 TTCAGTGGTAAATATCCATCCATCTA 57.495 34.615 0.00 0.00 37.30 1.98
3103 3457 7.392766 TTCAGTGGTAAATATCCATCCATCT 57.607 36.000 0.00 0.00 37.30 2.90
3104 3458 6.150140 GCTTCAGTGGTAAATATCCATCCATC 59.850 42.308 0.00 0.00 37.30 3.51
3105 3459 6.006449 GCTTCAGTGGTAAATATCCATCCAT 58.994 40.000 0.00 0.00 37.30 3.41
3147 3501 4.021925 AGCTGACGGTCCCCAAGC 62.022 66.667 5.55 7.82 0.00 4.01
3356 3714 0.456653 CAAACATTACCTGCAGGCGC 60.457 55.000 33.06 0.00 39.32 6.53
3357 3715 0.456653 GCAAACATTACCTGCAGGCG 60.457 55.000 33.06 20.11 39.32 5.52
3358 3716 0.602562 TGCAAACATTACCTGCAGGC 59.397 50.000 33.06 15.34 41.01 4.85
3359 3717 1.067635 GGTGCAAACATTACCTGCAGG 60.068 52.381 31.60 31.60 46.16 4.85
3360 3718 1.067635 GGGTGCAAACATTACCTGCAG 60.068 52.381 6.78 6.78 46.16 4.41
3361 3719 0.965439 GGGTGCAAACATTACCTGCA 59.035 50.000 0.00 0.00 43.54 4.41
3362 3720 0.246360 GGGGTGCAAACATTACCTGC 59.754 55.000 0.00 0.00 34.87 4.85
3363 3721 0.894835 GGGGGTGCAAACATTACCTG 59.105 55.000 0.00 0.00 34.87 4.00
3364 3722 0.783850 AGGGGGTGCAAACATTACCT 59.216 50.000 0.00 0.00 34.87 3.08
3365 3723 1.182667 GAGGGGGTGCAAACATTACC 58.817 55.000 0.00 0.00 0.00 2.85
3366 3724 1.182667 GGAGGGGGTGCAAACATTAC 58.817 55.000 0.00 0.00 0.00 1.89
3367 3725 1.005450 GAGGAGGGGGTGCAAACATTA 59.995 52.381 0.00 0.00 0.00 1.90
3368 3726 0.251787 GAGGAGGGGGTGCAAACATT 60.252 55.000 0.00 0.00 0.00 2.71
3369 3727 1.142688 AGAGGAGGGGGTGCAAACAT 61.143 55.000 0.00 0.00 0.00 2.71
3370 3728 1.774217 AGAGGAGGGGGTGCAAACA 60.774 57.895 0.00 0.00 0.00 2.83
3371 3729 1.002011 GAGAGGAGGGGGTGCAAAC 60.002 63.158 0.00 0.00 0.00 2.93
3372 3730 3.495729 GAGAGGAGGGGGTGCAAA 58.504 61.111 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.