Multiple sequence alignment - TraesCS7B01G139300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G139300 chr7B 100.000 3033 0 0 1 3033 175897965 175894933 0.000000e+00 5602.0
1 TraesCS7B01G139300 chr7B 81.102 762 107 21 2 757 686807235 686807965 2.620000e-160 575.0
2 TraesCS7B01G139300 chr7B 80.546 293 50 7 480 769 736095478 736095766 5.090000e-53 219.0
3 TraesCS7B01G139300 chr7D 93.424 1323 64 10 790 2098 220998586 220999899 0.000000e+00 1940.0
4 TraesCS7B01G139300 chr7A 94.245 1251 55 7 790 2024 235480751 235482000 0.000000e+00 1895.0
5 TraesCS7B01G139300 chr7A 83.486 763 96 23 1 750 659653682 659652937 0.000000e+00 684.0
6 TraesCS7B01G139300 chr2D 89.804 765 57 11 1 763 422748256 422749001 0.000000e+00 961.0
7 TraesCS7B01G139300 chr2D 89.706 68 6 1 2290 2356 526379989 526380056 5.390000e-13 86.1
8 TraesCS7B01G139300 chr6B 91.118 653 30 11 2386 3033 18271997 18271368 0.000000e+00 859.0
9 TraesCS7B01G139300 chr6B 90.853 645 30 11 2390 3033 52371172 52371788 0.000000e+00 837.0
10 TraesCS7B01G139300 chr6B 90.367 654 22 12 2387 3033 618125009 618124390 0.000000e+00 821.0
11 TraesCS7B01G139300 chr6B 90.123 648 36 12 2388 3033 577442610 577443231 0.000000e+00 817.0
12 TraesCS7B01G139300 chr6B 87.654 162 18 2 599 759 508623958 508624118 1.440000e-43 187.0
13 TraesCS7B01G139300 chr3B 91.061 660 22 13 2388 3033 698606335 698605699 0.000000e+00 857.0
14 TraesCS7B01G139300 chr3B 90.606 660 30 11 2377 3033 666212934 666212304 0.000000e+00 846.0
15 TraesCS7B01G139300 chr3B 90.361 664 29 12 2371 3033 685899673 685900302 0.000000e+00 839.0
16 TraesCS7B01G139300 chr3B 89.954 647 33 12 2388 3033 513947748 513947133 0.000000e+00 806.0
17 TraesCS7B01G139300 chr3B 89.426 662 31 12 2387 3033 683600156 683599519 0.000000e+00 798.0
18 TraesCS7B01G139300 chr3B 87.277 393 43 6 2 389 11465152 11465542 2.780000e-120 442.0
19 TraesCS7B01G139300 chr3B 81.009 337 52 10 425 757 11465888 11466216 1.080000e-64 257.0
20 TraesCS7B01G139300 chr3B 77.652 264 53 6 498 759 239926985 239926726 4.050000e-34 156.0
21 TraesCS7B01G139300 chr3B 87.273 55 7 0 2302 2356 356209433 356209487 2.520000e-06 63.9
22 TraesCS7B01G139300 chr1B 90.937 651 31 11 2388 3033 43315177 43314550 0.000000e+00 850.0
23 TraesCS7B01G139300 chr1B 89.660 648 38 8 2387 3033 26701519 26702138 0.000000e+00 798.0
24 TraesCS7B01G139300 chr1B 89.320 206 22 0 554 759 665011277 665011482 3.000000e-65 259.0
25 TraesCS7B01G139300 chr5B 90.000 670 34 11 2371 3033 563118716 563118073 0.000000e+00 835.0
26 TraesCS7B01G139300 chr5B 86.335 161 22 0 599 759 660815860 660815700 3.110000e-40 176.0
27 TraesCS7B01G139300 chrUn 89.686 669 22 15 2388 3033 38942245 38942889 0.000000e+00 809.0
28 TraesCS7B01G139300 chr4B 89.831 649 32 12 2388 3033 374731281 374731898 0.000000e+00 802.0
29 TraesCS7B01G139300 chr2B 87.846 650 31 10 2385 3033 318178623 318179225 0.000000e+00 719.0
30 TraesCS7B01G139300 chr2B 82.298 322 43 10 436 750 261044783 261045097 1.790000e-67 267.0
31 TraesCS7B01G139300 chr2B 85.776 232 8 9 2378 2608 590860207 590860000 3.940000e-54 222.0
32 TraesCS7B01G139300 chr1D 84.121 762 86 18 2 759 165127104 165126374 0.000000e+00 704.0
33 TraesCS7B01G139300 chr3D 82.021 762 107 24 2 759 543682117 543682852 3.320000e-174 621.0
34 TraesCS7B01G139300 chr4D 82.454 701 96 20 65 763 195065413 195066088 3.370000e-164 588.0
35 TraesCS7B01G139300 chr2A 80.343 758 126 17 1 750 351514458 351515200 1.230000e-153 553.0
36 TraesCS7B01G139300 chr2A 80.453 706 108 20 46 743 256123359 256124042 2.090000e-141 512.0
37 TraesCS7B01G139300 chr2A 74.409 762 140 30 2 758 298603537 298604248 2.980000e-70 276.0
38 TraesCS7B01G139300 chr5D 78.059 752 137 19 7 750 223377074 223377805 1.660000e-122 449.0
39 TraesCS7B01G139300 chr4A 77.503 769 132 30 2 759 141983977 141984715 1.010000e-114 424.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G139300 chr7B 175894933 175897965 3032 True 5602.0 5602 100.000 1 3033 1 chr7B.!!$R1 3032
1 TraesCS7B01G139300 chr7B 686807235 686807965 730 False 575.0 575 81.102 2 757 1 chr7B.!!$F1 755
2 TraesCS7B01G139300 chr7D 220998586 220999899 1313 False 1940.0 1940 93.424 790 2098 1 chr7D.!!$F1 1308
3 TraesCS7B01G139300 chr7A 235480751 235482000 1249 False 1895.0 1895 94.245 790 2024 1 chr7A.!!$F1 1234
4 TraesCS7B01G139300 chr7A 659652937 659653682 745 True 684.0 684 83.486 1 750 1 chr7A.!!$R1 749
5 TraesCS7B01G139300 chr2D 422748256 422749001 745 False 961.0 961 89.804 1 763 1 chr2D.!!$F1 762
6 TraesCS7B01G139300 chr6B 18271368 18271997 629 True 859.0 859 91.118 2386 3033 1 chr6B.!!$R1 647
7 TraesCS7B01G139300 chr6B 52371172 52371788 616 False 837.0 837 90.853 2390 3033 1 chr6B.!!$F1 643
8 TraesCS7B01G139300 chr6B 618124390 618125009 619 True 821.0 821 90.367 2387 3033 1 chr6B.!!$R2 646
9 TraesCS7B01G139300 chr6B 577442610 577443231 621 False 817.0 817 90.123 2388 3033 1 chr6B.!!$F3 645
10 TraesCS7B01G139300 chr3B 698605699 698606335 636 True 857.0 857 91.061 2388 3033 1 chr3B.!!$R5 645
11 TraesCS7B01G139300 chr3B 666212304 666212934 630 True 846.0 846 90.606 2377 3033 1 chr3B.!!$R3 656
12 TraesCS7B01G139300 chr3B 685899673 685900302 629 False 839.0 839 90.361 2371 3033 1 chr3B.!!$F2 662
13 TraesCS7B01G139300 chr3B 513947133 513947748 615 True 806.0 806 89.954 2388 3033 1 chr3B.!!$R2 645
14 TraesCS7B01G139300 chr3B 683599519 683600156 637 True 798.0 798 89.426 2387 3033 1 chr3B.!!$R4 646
15 TraesCS7B01G139300 chr3B 11465152 11466216 1064 False 349.5 442 84.143 2 757 2 chr3B.!!$F3 755
16 TraesCS7B01G139300 chr1B 43314550 43315177 627 True 850.0 850 90.937 2388 3033 1 chr1B.!!$R1 645
17 TraesCS7B01G139300 chr1B 26701519 26702138 619 False 798.0 798 89.660 2387 3033 1 chr1B.!!$F1 646
18 TraesCS7B01G139300 chr5B 563118073 563118716 643 True 835.0 835 90.000 2371 3033 1 chr5B.!!$R1 662
19 TraesCS7B01G139300 chrUn 38942245 38942889 644 False 809.0 809 89.686 2388 3033 1 chrUn.!!$F1 645
20 TraesCS7B01G139300 chr4B 374731281 374731898 617 False 802.0 802 89.831 2388 3033 1 chr4B.!!$F1 645
21 TraesCS7B01G139300 chr2B 318178623 318179225 602 False 719.0 719 87.846 2385 3033 1 chr2B.!!$F2 648
22 TraesCS7B01G139300 chr1D 165126374 165127104 730 True 704.0 704 84.121 2 759 1 chr1D.!!$R1 757
23 TraesCS7B01G139300 chr3D 543682117 543682852 735 False 621.0 621 82.021 2 759 1 chr3D.!!$F1 757
24 TraesCS7B01G139300 chr4D 195065413 195066088 675 False 588.0 588 82.454 65 763 1 chr4D.!!$F1 698
25 TraesCS7B01G139300 chr2A 351514458 351515200 742 False 553.0 553 80.343 1 750 1 chr2A.!!$F3 749
26 TraesCS7B01G139300 chr2A 256123359 256124042 683 False 512.0 512 80.453 46 743 1 chr2A.!!$F1 697
27 TraesCS7B01G139300 chr2A 298603537 298604248 711 False 276.0 276 74.409 2 758 1 chr2A.!!$F2 756
28 TraesCS7B01G139300 chr5D 223377074 223377805 731 False 449.0 449 78.059 7 750 1 chr5D.!!$F1 743
29 TraesCS7B01G139300 chr4A 141983977 141984715 738 False 424.0 424 77.503 2 759 1 chr4A.!!$F1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 966 0.107897 TGTGTGAGAAACCAGCGTGT 60.108 50.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2526 0.185901 TGCCTTCCTGCTGGAGTTTT 59.814 50.0 12.54 0.0 44.24 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.822519 AGAAAATCGCTGCCACATAGAATTA 59.177 36.000 0.00 0.00 0.00 1.40
37 38 7.436933 TGCCACATAGAATTACAGACATCTAG 58.563 38.462 0.00 0.00 0.00 2.43
67 69 3.791973 ACAGAGAGATAGTTGCCGAAG 57.208 47.619 0.00 0.00 0.00 3.79
124 127 2.469826 CGATAGAACTACGCAATGCCA 58.530 47.619 0.00 0.00 39.76 4.92
200 212 0.460284 TCCGCCTGAATCTCGAAAGC 60.460 55.000 0.00 0.00 0.00 3.51
225 237 2.692557 CGAGAAGGATGTGACCAGAGAT 59.307 50.000 0.00 0.00 0.00 2.75
237 249 2.834549 GACCAGAGATGAAGGGAGACAA 59.165 50.000 0.00 0.00 0.00 3.18
260 275 5.916661 ATTGGACTAGTAGAAAGCTTCGA 57.083 39.130 3.59 0.00 34.02 3.71
372 403 2.833582 CGCCGCCTTCTCTCCCTA 60.834 66.667 0.00 0.00 0.00 3.53
390 421 1.539388 CTATCGACTGCTCCTGCTAGG 59.461 57.143 0.00 0.00 40.48 3.02
399 432 1.470112 GCTCCTGCTAGGACTTCGTTC 60.470 57.143 1.25 0.00 40.06 3.95
402 435 2.025605 TCCTGCTAGGACTTCGTTCCTA 60.026 50.000 9.06 9.06 44.84 2.94
403 436 2.099427 CCTGCTAGGACTTCGTTCCTAC 59.901 54.545 6.22 5.31 44.84 3.18
409 443 3.624777 AGGACTTCGTTCCTACCGAATA 58.375 45.455 1.74 0.00 44.84 1.75
426 460 0.620556 ATAGAACTGCTGGTGTGGGG 59.379 55.000 0.00 0.00 0.00 4.96
573 936 3.458579 CACGTCCGACTCGCAACG 61.459 66.667 17.76 17.76 39.23 4.10
603 966 0.107897 TGTGTGAGAAACCAGCGTGT 60.108 50.000 0.00 0.00 0.00 4.49
604 967 0.582005 GTGTGAGAAACCAGCGTGTC 59.418 55.000 0.00 0.00 0.00 3.67
632 999 2.037053 CCAAACGCCCACACATCAA 58.963 52.632 0.00 0.00 0.00 2.57
638 1005 2.690778 GCCCACACATCAACCTCGC 61.691 63.158 0.00 0.00 0.00 5.03
646 1013 0.108329 CATCAACCTCGCCCTACGTT 60.108 55.000 0.00 0.00 44.19 3.99
704 1071 3.252458 GCAAACTTAACTGGACGGTGATT 59.748 43.478 0.00 0.00 0.00 2.57
705 1072 4.261447 GCAAACTTAACTGGACGGTGATTT 60.261 41.667 0.00 0.00 0.00 2.17
711 1078 1.418342 CTGGACGGTGATTTACGCGG 61.418 60.000 12.47 0.00 35.84 6.46
763 1130 3.128242 TGGGCGTTAGTGTTTTCGAAAAA 59.872 39.130 24.04 12.15 0.00 1.94
839 1206 3.364889 TCGGTACATTCGCCTAATCAG 57.635 47.619 0.00 0.00 0.00 2.90
865 1232 3.406361 GCTGTCGCTGTCCACACG 61.406 66.667 0.00 0.00 0.00 4.49
876 1243 1.134759 TGTCCACACGAAACGGAAGAA 60.135 47.619 0.00 0.00 0.00 2.52
918 1286 1.145803 GTTGAACCGAACCTTCTCCG 58.854 55.000 0.00 0.00 0.00 4.63
986 1354 3.703556 CTCATATATCTCCCGCCATCACT 59.296 47.826 0.00 0.00 0.00 3.41
991 1359 0.324738 TCTCCCGCCATCACTCTCTT 60.325 55.000 0.00 0.00 0.00 2.85
997 1365 1.135257 CGCCATCACTCTCTTCGTTCT 60.135 52.381 0.00 0.00 0.00 3.01
1004 1372 3.574396 TCACTCTCTTCGTTCTCCACAAT 59.426 43.478 0.00 0.00 0.00 2.71
1018 1386 1.270550 CCACAATCACAAGCCCAACTC 59.729 52.381 0.00 0.00 0.00 3.01
1024 1392 2.113139 CAAGCCCAACTCCACGGT 59.887 61.111 0.00 0.00 0.00 4.83
1091 1472 3.509442 AGGGATTGGCACTTTGATTTGA 58.491 40.909 0.00 0.00 0.00 2.69
1114 1499 4.368808 GCGCGACGAAGCAAGCAA 62.369 61.111 12.10 0.00 36.85 3.91
1115 1500 2.202096 CGCGACGAAGCAAGCAAG 60.202 61.111 0.00 0.00 36.85 4.01
1116 1501 2.500582 GCGACGAAGCAAGCAAGC 60.501 61.111 0.00 0.00 37.05 4.01
1125 1510 2.847327 AGCAAGCAAGCTAAGTGAGA 57.153 45.000 0.60 0.00 44.50 3.27
1206 1591 2.593956 GGAGGAGCCGGGACTGTTT 61.594 63.158 2.18 0.00 0.00 2.83
1243 1628 4.299547 ACTGCTGCAGCGTTCCGA 62.300 61.111 32.11 13.90 45.83 4.55
1399 1784 1.406205 CGGAAGAGGAAAAGAGGGCTC 60.406 57.143 0.00 0.00 0.00 4.70
1935 2320 1.332465 CGCGTCGATTTGTGTTTGTGA 60.332 47.619 0.00 0.00 0.00 3.58
1948 2333 3.064820 GTGTTTGTGATGTCCAGTTCGTT 59.935 43.478 0.00 0.00 0.00 3.85
2003 2391 1.377856 GACCTTCCTGCCCAGCTTC 60.378 63.158 0.00 0.00 0.00 3.86
2079 2467 5.705441 ACCATTCAAATCGTGTTGACACTAT 59.295 36.000 12.00 4.31 44.34 2.12
2080 2468 6.128282 ACCATTCAAATCGTGTTGACACTATC 60.128 38.462 12.00 0.00 44.34 2.08
2082 2470 4.888917 TCAAATCGTGTTGACACTATCCA 58.111 39.130 12.00 0.00 44.34 3.41
2083 2471 4.688879 TCAAATCGTGTTGACACTATCCAC 59.311 41.667 12.00 0.00 44.34 4.02
2084 2472 4.537135 AATCGTGTTGACACTATCCACT 57.463 40.909 12.00 0.00 44.34 4.00
2088 2476 4.155462 TCGTGTTGACACTATCCACTACTC 59.845 45.833 12.00 0.00 44.34 2.59
2098 2486 2.350057 TCCACTACTCGCTAGCTCAT 57.650 50.000 13.93 0.00 0.00 2.90
2099 2487 3.487120 TCCACTACTCGCTAGCTCATA 57.513 47.619 13.93 0.97 0.00 2.15
2100 2488 3.816994 TCCACTACTCGCTAGCTCATAA 58.183 45.455 13.93 0.00 0.00 1.90
2101 2489 3.815962 TCCACTACTCGCTAGCTCATAAG 59.184 47.826 13.93 6.31 0.00 1.73
2102 2490 3.566322 CCACTACTCGCTAGCTCATAAGT 59.434 47.826 13.93 10.32 0.00 2.24
2103 2491 4.755629 CCACTACTCGCTAGCTCATAAGTA 59.244 45.833 13.93 10.86 0.00 2.24
2104 2492 5.334260 CCACTACTCGCTAGCTCATAAGTAC 60.334 48.000 13.93 0.00 0.00 2.73
2105 2493 5.467399 CACTACTCGCTAGCTCATAAGTACT 59.533 44.000 13.93 0.00 0.00 2.73
2106 2494 6.017770 CACTACTCGCTAGCTCATAAGTACTT 60.018 42.308 13.68 13.68 0.00 2.24
2107 2495 5.427036 ACTCGCTAGCTCATAAGTACTTC 57.573 43.478 12.39 0.00 0.00 3.01
2108 2496 4.276431 ACTCGCTAGCTCATAAGTACTTCC 59.724 45.833 12.39 0.00 0.00 3.46
2109 2497 4.462133 TCGCTAGCTCATAAGTACTTCCT 58.538 43.478 12.39 4.87 0.00 3.36
2110 2498 4.515944 TCGCTAGCTCATAAGTACTTCCTC 59.484 45.833 12.39 0.00 0.00 3.71
2111 2499 4.320641 CGCTAGCTCATAAGTACTTCCTCC 60.321 50.000 12.39 0.00 0.00 4.30
2112 2500 4.320641 GCTAGCTCATAAGTACTTCCTCCG 60.321 50.000 12.39 0.00 0.00 4.63
2113 2501 3.633418 AGCTCATAAGTACTTCCTCCGT 58.367 45.455 12.39 0.00 0.00 4.69
2114 2502 3.633065 AGCTCATAAGTACTTCCTCCGTC 59.367 47.826 12.39 0.00 0.00 4.79
2115 2503 3.633065 GCTCATAAGTACTTCCTCCGTCT 59.367 47.826 12.39 0.00 0.00 4.18
2116 2504 4.498345 GCTCATAAGTACTTCCTCCGTCTG 60.498 50.000 12.39 0.00 0.00 3.51
2117 2505 4.851843 TCATAAGTACTTCCTCCGTCTGA 58.148 43.478 12.39 1.47 0.00 3.27
2118 2506 5.258841 TCATAAGTACTTCCTCCGTCTGAA 58.741 41.667 12.39 0.00 0.00 3.02
2119 2507 5.892119 TCATAAGTACTTCCTCCGTCTGAAT 59.108 40.000 12.39 0.00 0.00 2.57
2120 2508 6.380274 TCATAAGTACTTCCTCCGTCTGAATT 59.620 38.462 12.39 0.00 0.00 2.17
2121 2509 5.485209 AAGTACTTCCTCCGTCTGAATTT 57.515 39.130 1.12 0.00 0.00 1.82
2122 2510 6.600882 AAGTACTTCCTCCGTCTGAATTTA 57.399 37.500 1.12 0.00 0.00 1.40
2123 2511 6.793505 AGTACTTCCTCCGTCTGAATTTAT 57.206 37.500 0.00 0.00 0.00 1.40
2124 2512 7.184067 AGTACTTCCTCCGTCTGAATTTATT 57.816 36.000 0.00 0.00 0.00 1.40
2125 2513 8.302515 AGTACTTCCTCCGTCTGAATTTATTA 57.697 34.615 0.00 0.00 0.00 0.98
2126 2514 8.414778 AGTACTTCCTCCGTCTGAATTTATTAG 58.585 37.037 0.00 0.00 0.00 1.73
2127 2515 6.583562 ACTTCCTCCGTCTGAATTTATTAGG 58.416 40.000 0.00 0.00 0.00 2.69
2128 2516 4.957296 TCCTCCGTCTGAATTTATTAGGC 58.043 43.478 0.00 0.00 0.00 3.93
2129 2517 4.065789 CCTCCGTCTGAATTTATTAGGCC 58.934 47.826 0.00 0.00 0.00 5.19
2130 2518 4.065789 CTCCGTCTGAATTTATTAGGCCC 58.934 47.826 0.00 0.00 0.00 5.80
2131 2519 3.456644 TCCGTCTGAATTTATTAGGCCCA 59.543 43.478 0.00 0.00 0.00 5.36
2132 2520 4.080243 TCCGTCTGAATTTATTAGGCCCAA 60.080 41.667 0.00 0.00 0.00 4.12
2133 2521 4.036380 CCGTCTGAATTTATTAGGCCCAAC 59.964 45.833 0.00 0.00 0.00 3.77
2134 2522 4.260620 CGTCTGAATTTATTAGGCCCAACG 60.261 45.833 0.00 0.00 0.00 4.10
2135 2523 4.879545 GTCTGAATTTATTAGGCCCAACGA 59.120 41.667 0.00 0.00 0.00 3.85
2136 2524 4.879545 TCTGAATTTATTAGGCCCAACGAC 59.120 41.667 0.00 0.00 0.00 4.34
2137 2525 3.623960 TGAATTTATTAGGCCCAACGACG 59.376 43.478 0.00 0.00 0.00 5.12
2138 2526 3.547054 ATTTATTAGGCCCAACGACGA 57.453 42.857 0.00 0.00 0.00 4.20
2139 2527 3.331478 TTTATTAGGCCCAACGACGAA 57.669 42.857 0.00 0.00 0.00 3.85
2140 2528 3.331478 TTATTAGGCCCAACGACGAAA 57.669 42.857 0.00 0.00 0.00 3.46
2141 2529 2.188062 ATTAGGCCCAACGACGAAAA 57.812 45.000 0.00 0.00 0.00 2.29
2142 2530 1.228533 TTAGGCCCAACGACGAAAAC 58.771 50.000 0.00 0.00 0.00 2.43
2143 2531 0.393820 TAGGCCCAACGACGAAAACT 59.606 50.000 0.00 0.00 0.00 2.66
2144 2532 0.883370 AGGCCCAACGACGAAAACTC 60.883 55.000 0.00 0.00 0.00 3.01
2145 2533 1.572941 GCCCAACGACGAAAACTCC 59.427 57.895 0.00 0.00 0.00 3.85
2146 2534 1.161563 GCCCAACGACGAAAACTCCA 61.162 55.000 0.00 0.00 0.00 3.86
2147 2535 0.865769 CCCAACGACGAAAACTCCAG 59.134 55.000 0.00 0.00 0.00 3.86
2148 2536 0.234884 CCAACGACGAAAACTCCAGC 59.765 55.000 0.00 0.00 0.00 4.85
2149 2537 0.934496 CAACGACGAAAACTCCAGCA 59.066 50.000 0.00 0.00 0.00 4.41
2150 2538 1.070577 CAACGACGAAAACTCCAGCAG 60.071 52.381 0.00 0.00 0.00 4.24
2151 2539 0.600255 ACGACGAAAACTCCAGCAGG 60.600 55.000 0.00 0.00 0.00 4.85
2152 2540 0.319555 CGACGAAAACTCCAGCAGGA 60.320 55.000 0.00 0.00 43.21 3.86
2153 2541 1.872237 CGACGAAAACTCCAGCAGGAA 60.872 52.381 0.00 0.00 45.19 3.36
2154 2542 1.801178 GACGAAAACTCCAGCAGGAAG 59.199 52.381 0.00 0.00 45.19 3.46
2155 2543 1.160137 CGAAAACTCCAGCAGGAAGG 58.840 55.000 0.00 0.00 45.19 3.46
2156 2544 0.884514 GAAAACTCCAGCAGGAAGGC 59.115 55.000 0.00 0.00 45.19 4.35
2157 2545 0.185901 AAAACTCCAGCAGGAAGGCA 59.814 50.000 0.00 0.00 45.19 4.75
2158 2546 0.538287 AAACTCCAGCAGGAAGGCAC 60.538 55.000 0.00 0.00 45.19 5.01
2159 2547 1.708993 AACTCCAGCAGGAAGGCACA 61.709 55.000 0.00 0.00 45.19 4.57
2160 2548 1.073722 CTCCAGCAGGAAGGCACAA 59.926 57.895 0.00 0.00 45.19 3.33
2161 2549 1.228245 TCCAGCAGGAAGGCACAAC 60.228 57.895 0.00 0.00 42.23 3.32
2162 2550 1.529010 CCAGCAGGAAGGCACAACA 60.529 57.895 0.00 0.00 36.89 3.33
2163 2551 1.108727 CCAGCAGGAAGGCACAACAA 61.109 55.000 0.00 0.00 36.89 2.83
2164 2552 0.963962 CAGCAGGAAGGCACAACAAT 59.036 50.000 0.00 0.00 35.83 2.71
2165 2553 1.342174 CAGCAGGAAGGCACAACAATT 59.658 47.619 0.00 0.00 35.83 2.32
2166 2554 2.557924 CAGCAGGAAGGCACAACAATTA 59.442 45.455 0.00 0.00 35.83 1.40
2167 2555 2.558359 AGCAGGAAGGCACAACAATTAC 59.442 45.455 0.00 0.00 35.83 1.89
2168 2556 2.558359 GCAGGAAGGCACAACAATTACT 59.442 45.455 0.00 0.00 0.00 2.24
2169 2557 3.005791 GCAGGAAGGCACAACAATTACTT 59.994 43.478 0.00 0.00 0.00 2.24
2170 2558 4.798574 CAGGAAGGCACAACAATTACTTC 58.201 43.478 0.00 0.00 34.98 3.01
2171 2559 4.174411 GGAAGGCACAACAATTACTTCC 57.826 45.455 0.00 0.00 44.75 3.46
2172 2560 3.826729 GGAAGGCACAACAATTACTTCCT 59.173 43.478 12.61 0.00 46.43 3.36
2173 2561 4.280929 GGAAGGCACAACAATTACTTCCTT 59.719 41.667 12.61 0.00 46.43 3.36
2174 2562 5.221441 GGAAGGCACAACAATTACTTCCTTT 60.221 40.000 12.61 0.00 46.43 3.11
2175 2563 6.015772 GGAAGGCACAACAATTACTTCCTTTA 60.016 38.462 12.61 0.00 46.43 1.85
2176 2564 6.969993 AGGCACAACAATTACTTCCTTTAA 57.030 33.333 0.00 0.00 0.00 1.52
2177 2565 7.539034 AGGCACAACAATTACTTCCTTTAAT 57.461 32.000 0.00 0.00 0.00 1.40
2178 2566 8.644374 AGGCACAACAATTACTTCCTTTAATA 57.356 30.769 0.00 0.00 0.00 0.98
2179 2567 9.255029 AGGCACAACAATTACTTCCTTTAATAT 57.745 29.630 0.00 0.00 0.00 1.28
2180 2568 9.869757 GGCACAACAATTACTTCCTTTAATATT 57.130 29.630 0.00 0.00 0.00 1.28
2187 2575 9.233232 CAATTACTTCCTTTAATATTTCCGTGC 57.767 33.333 0.00 0.00 0.00 5.34
2188 2576 8.747538 ATTACTTCCTTTAATATTTCCGTGCT 57.252 30.769 0.00 0.00 0.00 4.40
2189 2577 8.570068 TTACTTCCTTTAATATTTCCGTGCTT 57.430 30.769 0.00 0.00 0.00 3.91
2190 2578 9.669887 TTACTTCCTTTAATATTTCCGTGCTTA 57.330 29.630 0.00 0.00 0.00 3.09
2191 2579 8.209917 ACTTCCTTTAATATTTCCGTGCTTAG 57.790 34.615 0.00 0.00 0.00 2.18
2192 2580 7.827729 ACTTCCTTTAATATTTCCGTGCTTAGT 59.172 33.333 0.00 0.00 0.00 2.24
2193 2581 7.548196 TCCTTTAATATTTCCGTGCTTAGTG 57.452 36.000 0.00 0.00 0.00 2.74
2194 2582 7.107542 TCCTTTAATATTTCCGTGCTTAGTGT 58.892 34.615 0.00 0.00 0.00 3.55
2195 2583 7.279313 TCCTTTAATATTTCCGTGCTTAGTGTC 59.721 37.037 0.00 0.00 0.00 3.67
2196 2584 6.913873 TTAATATTTCCGTGCTTAGTGTCC 57.086 37.500 0.00 0.00 0.00 4.02
2197 2585 1.722011 ATTTCCGTGCTTAGTGTCCG 58.278 50.000 0.00 0.00 0.00 4.79
2198 2586 0.675083 TTTCCGTGCTTAGTGTCCGA 59.325 50.000 0.00 0.00 0.00 4.55
2199 2587 0.892755 TTCCGTGCTTAGTGTCCGAT 59.107 50.000 0.00 0.00 0.00 4.18
2200 2588 0.892755 TCCGTGCTTAGTGTCCGATT 59.107 50.000 0.00 0.00 0.00 3.34
2201 2589 2.093890 TCCGTGCTTAGTGTCCGATTA 58.906 47.619 0.00 0.00 0.00 1.75
2202 2590 2.098607 TCCGTGCTTAGTGTCCGATTAG 59.901 50.000 0.00 0.00 0.00 1.73
2203 2591 2.460918 CGTGCTTAGTGTCCGATTAGG 58.539 52.381 0.00 0.00 42.97 2.69
2217 2605 6.135819 TCCGATTAGGATAGTCATAGTGGA 57.864 41.667 0.00 0.00 45.98 4.02
2218 2606 6.181190 TCCGATTAGGATAGTCATAGTGGAG 58.819 44.000 0.00 0.00 45.98 3.86
2219 2607 6.012771 TCCGATTAGGATAGTCATAGTGGAGA 60.013 42.308 0.00 0.00 45.98 3.71
2220 2608 6.317642 CCGATTAGGATAGTCATAGTGGAGAG 59.682 46.154 0.00 0.00 45.00 3.20
2221 2609 7.106890 CGATTAGGATAGTCATAGTGGAGAGA 58.893 42.308 0.00 0.00 0.00 3.10
2222 2610 7.773224 CGATTAGGATAGTCATAGTGGAGAGAT 59.227 40.741 0.00 0.00 0.00 2.75
2223 2611 9.474313 GATTAGGATAGTCATAGTGGAGAGATT 57.526 37.037 0.00 0.00 0.00 2.40
2225 2613 9.967451 TTAGGATAGTCATAGTGGAGAGATTAG 57.033 37.037 0.00 0.00 0.00 1.73
2226 2614 7.410174 AGGATAGTCATAGTGGAGAGATTAGG 58.590 42.308 0.00 0.00 0.00 2.69
2227 2615 6.096282 GGATAGTCATAGTGGAGAGATTAGGC 59.904 46.154 0.00 0.00 0.00 3.93
2228 2616 5.073437 AGTCATAGTGGAGAGATTAGGCT 57.927 43.478 0.00 0.00 0.00 4.58
2229 2617 6.207509 AGTCATAGTGGAGAGATTAGGCTA 57.792 41.667 0.00 0.00 0.00 3.93
2230 2618 6.245408 AGTCATAGTGGAGAGATTAGGCTAG 58.755 44.000 0.00 0.00 0.00 3.42
2231 2619 6.007703 GTCATAGTGGAGAGATTAGGCTAGT 58.992 44.000 0.00 0.00 0.00 2.57
2232 2620 6.150474 GTCATAGTGGAGAGATTAGGCTAGTC 59.850 46.154 8.86 8.86 0.00 2.59
2233 2621 4.528076 AGTGGAGAGATTAGGCTAGTCA 57.472 45.455 17.89 0.00 0.00 3.41
2234 2622 5.073437 AGTGGAGAGATTAGGCTAGTCAT 57.927 43.478 17.89 7.07 0.00 3.06
2235 2623 6.207509 AGTGGAGAGATTAGGCTAGTCATA 57.792 41.667 17.89 0.00 0.00 2.15
2236 2624 6.245408 AGTGGAGAGATTAGGCTAGTCATAG 58.755 44.000 17.89 0.00 0.00 2.23
2237 2625 6.007703 GTGGAGAGATTAGGCTAGTCATAGT 58.992 44.000 17.89 0.00 0.00 2.12
2238 2626 6.007076 TGGAGAGATTAGGCTAGTCATAGTG 58.993 44.000 17.89 0.00 0.00 2.74
2239 2627 5.417580 GGAGAGATTAGGCTAGTCATAGTGG 59.582 48.000 17.89 0.00 0.00 4.00
2240 2628 6.207509 AGAGATTAGGCTAGTCATAGTGGA 57.792 41.667 17.89 0.00 0.00 4.02
2241 2629 6.245408 AGAGATTAGGCTAGTCATAGTGGAG 58.755 44.000 17.89 0.00 0.00 3.86
2242 2630 6.044989 AGAGATTAGGCTAGTCATAGTGGAGA 59.955 42.308 17.89 0.00 0.00 3.71
2243 2631 6.799827 AGATTAGGCTAGTCATAGTGGAGAT 58.200 40.000 17.89 0.00 0.00 2.75
2244 2632 7.245292 AGATTAGGCTAGTCATAGTGGAGATT 58.755 38.462 17.89 0.00 0.00 2.40
2245 2633 8.394822 AGATTAGGCTAGTCATAGTGGAGATTA 58.605 37.037 17.89 0.00 0.00 1.75
2246 2634 8.588290 ATTAGGCTAGTCATAGTGGAGATTAG 57.412 38.462 0.00 0.00 0.00 1.73
2247 2635 5.329399 AGGCTAGTCATAGTGGAGATTAGG 58.671 45.833 0.00 0.00 0.00 2.69
2248 2636 4.081917 GGCTAGTCATAGTGGAGATTAGGC 60.082 50.000 0.00 0.00 40.49 3.93
2249 2637 4.770010 GCTAGTCATAGTGGAGATTAGGCT 59.230 45.833 0.00 0.00 0.00 4.58
2250 2638 5.946972 GCTAGTCATAGTGGAGATTAGGCTA 59.053 44.000 0.00 0.00 0.00 3.93
2251 2639 6.434652 GCTAGTCATAGTGGAGATTAGGCTAA 59.565 42.308 9.79 9.79 0.00 3.09
2252 2640 7.123547 GCTAGTCATAGTGGAGATTAGGCTAAT 59.876 40.741 19.32 19.32 0.00 1.73
2253 2641 7.475137 AGTCATAGTGGAGATTAGGCTAATC 57.525 40.000 30.99 30.99 43.77 1.75
2254 2642 7.013220 AGTCATAGTGGAGATTAGGCTAATCA 58.987 38.462 36.06 21.36 45.41 2.57
2255 2643 7.677745 AGTCATAGTGGAGATTAGGCTAATCAT 59.322 37.037 36.06 25.36 45.41 2.45
2256 2644 8.972127 GTCATAGTGGAGATTAGGCTAATCATA 58.028 37.037 36.06 23.73 45.41 2.15
2257 2645 9.194972 TCATAGTGGAGATTAGGCTAATCATAG 57.805 37.037 36.06 21.35 45.41 2.23
2258 2646 8.976353 CATAGTGGAGATTAGGCTAATCATAGT 58.024 37.037 36.06 27.13 45.41 2.12
2259 2647 7.238486 AGTGGAGATTAGGCTAATCATAGTG 57.762 40.000 36.06 0.00 45.41 2.74
2260 2648 6.212388 AGTGGAGATTAGGCTAATCATAGTGG 59.788 42.308 36.06 0.00 45.41 4.00
2261 2649 6.014156 GTGGAGATTAGGCTAATCATAGTGGT 60.014 42.308 36.06 21.07 45.41 4.16
2262 2650 7.178628 GTGGAGATTAGGCTAATCATAGTGGTA 59.821 40.741 36.06 17.72 45.41 3.25
2263 2651 7.397476 TGGAGATTAGGCTAATCATAGTGGTAG 59.603 40.741 36.06 0.00 45.41 3.18
2264 2652 7.397761 GGAGATTAGGCTAATCATAGTGGTAGT 59.602 40.741 36.06 19.31 45.41 2.73
2265 2653 9.463902 GAGATTAGGCTAATCATAGTGGTAGTA 57.536 37.037 36.06 2.34 45.41 1.82
2266 2654 9.469097 AGATTAGGCTAATCATAGTGGTAGTAG 57.531 37.037 36.06 0.00 45.41 2.57
2267 2655 9.245481 GATTAGGCTAATCATAGTGGTAGTAGT 57.755 37.037 32.35 3.91 43.12 2.73
2271 2659 9.603189 AGGCTAATCATAGTGGTAGTAGTAATT 57.397 33.333 0.00 0.00 0.00 1.40
2309 2697 9.914131 GAGATGCATGTTATTATACTAGTCACA 57.086 33.333 2.46 0.00 0.00 3.58
2313 2701 9.271828 TGCATGTTATTATACTAGTCACAATGG 57.728 33.333 0.00 0.00 0.00 3.16
2314 2702 8.721478 GCATGTTATTATACTAGTCACAATGGG 58.279 37.037 0.00 0.00 0.00 4.00
2315 2703 9.778741 CATGTTATTATACTAGTCACAATGGGT 57.221 33.333 0.00 0.00 0.00 4.51
2316 2704 9.998106 ATGTTATTATACTAGTCACAATGGGTC 57.002 33.333 0.00 0.00 0.00 4.46
2317 2705 8.139350 TGTTATTATACTAGTCACAATGGGTCG 58.861 37.037 0.00 0.00 0.00 4.79
2318 2706 6.726490 ATTATACTAGTCACAATGGGTCGT 57.274 37.500 0.00 0.00 0.00 4.34
2319 2707 7.828508 ATTATACTAGTCACAATGGGTCGTA 57.171 36.000 0.00 0.00 0.00 3.43
2320 2708 7.643569 TTATACTAGTCACAATGGGTCGTAA 57.356 36.000 0.00 0.00 0.00 3.18
2321 2709 4.184079 ACTAGTCACAATGGGTCGTAAC 57.816 45.455 0.00 0.00 0.00 2.50
2322 2710 3.830755 ACTAGTCACAATGGGTCGTAACT 59.169 43.478 0.00 0.00 0.00 2.24
2323 2711 3.764237 AGTCACAATGGGTCGTAACTT 57.236 42.857 0.00 0.00 0.00 2.66
2324 2712 4.877378 AGTCACAATGGGTCGTAACTTA 57.123 40.909 0.00 0.00 0.00 2.24
2325 2713 4.817517 AGTCACAATGGGTCGTAACTTAG 58.182 43.478 0.00 0.00 0.00 2.18
2326 2714 4.525487 AGTCACAATGGGTCGTAACTTAGA 59.475 41.667 0.00 0.00 0.00 2.10
2327 2715 4.624452 GTCACAATGGGTCGTAACTTAGAC 59.376 45.833 0.00 0.00 36.70 2.59
2328 2716 4.525487 TCACAATGGGTCGTAACTTAGACT 59.475 41.667 0.00 0.00 37.52 3.24
2329 2717 5.711506 TCACAATGGGTCGTAACTTAGACTA 59.288 40.000 0.00 0.00 37.52 2.59
2330 2718 6.034591 CACAATGGGTCGTAACTTAGACTAG 58.965 44.000 0.00 0.00 37.52 2.57
2331 2719 5.713861 ACAATGGGTCGTAACTTAGACTAGT 59.286 40.000 0.00 0.00 37.52 2.57
2332 2720 6.886459 ACAATGGGTCGTAACTTAGACTAGTA 59.114 38.462 0.00 0.00 37.52 1.82
2333 2721 7.394359 ACAATGGGTCGTAACTTAGACTAGTAA 59.606 37.037 0.00 0.00 37.52 2.24
2334 2722 8.411683 CAATGGGTCGTAACTTAGACTAGTAAT 58.588 37.037 0.00 0.00 37.52 1.89
2335 2723 9.632638 AATGGGTCGTAACTTAGACTAGTAATA 57.367 33.333 0.00 0.00 37.52 0.98
2336 2724 9.804977 ATGGGTCGTAACTTAGACTAGTAATAT 57.195 33.333 0.00 0.00 37.52 1.28
2337 2725 9.060347 TGGGTCGTAACTTAGACTAGTAATATG 57.940 37.037 0.00 0.00 37.52 1.78
2338 2726 9.061435 GGGTCGTAACTTAGACTAGTAATATGT 57.939 37.037 0.00 0.00 37.52 2.29
2361 2749 8.400184 TGTATATGTTACTAGTCTATTGGCGT 57.600 34.615 0.00 0.00 0.00 5.68
2362 2750 9.506018 TGTATATGTTACTAGTCTATTGGCGTA 57.494 33.333 0.00 0.00 0.00 4.42
2365 2753 9.856488 ATATGTTACTAGTCTATTGGCGTAATG 57.144 33.333 0.00 0.00 0.00 1.90
2366 2754 7.104043 TGTTACTAGTCTATTGGCGTAATGT 57.896 36.000 0.00 0.00 0.00 2.71
2367 2755 8.224389 TGTTACTAGTCTATTGGCGTAATGTA 57.776 34.615 0.00 0.00 0.00 2.29
2368 2756 8.685427 TGTTACTAGTCTATTGGCGTAATGTAA 58.315 33.333 0.00 0.00 0.00 2.41
2369 2757 8.962111 GTTACTAGTCTATTGGCGTAATGTAAC 58.038 37.037 0.00 0.00 30.44 2.50
2375 2763 9.386010 AGTCTATTGGCGTAATGTAACATTTTA 57.614 29.630 0.00 0.00 0.00 1.52
2405 2793 3.368739 GGTTACTAGCAAAAGAGCCCGTA 60.369 47.826 0.00 0.00 34.23 4.02
2522 2912 0.179004 TCACATTTGTGTTCCCGGCT 60.179 50.000 10.30 0.00 45.76 5.52
2537 2927 1.364626 CGGCTGTGGTCTCAATGCTC 61.365 60.000 0.00 0.00 0.00 4.26
2538 2928 0.321919 GGCTGTGGTCTCAATGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
2539 2929 0.801251 GCTGTGGTCTCAATGCTCAC 59.199 55.000 0.00 0.00 0.00 3.51
2540 2930 1.879372 GCTGTGGTCTCAATGCTCACA 60.879 52.381 0.00 0.00 36.94 3.58
2541 2931 1.802960 CTGTGGTCTCAATGCTCACAC 59.197 52.381 0.00 0.00 35.01 3.82
2542 2932 0.792640 GTGGTCTCAATGCTCACACG 59.207 55.000 0.00 0.00 0.00 4.49
2543 2933 0.320683 TGGTCTCAATGCTCACACGG 60.321 55.000 0.00 0.00 0.00 4.94
2544 2934 0.320771 GGTCTCAATGCTCACACGGT 60.321 55.000 0.00 0.00 0.00 4.83
2545 2935 1.071605 GTCTCAATGCTCACACGGTC 58.928 55.000 0.00 0.00 0.00 4.79
2546 2936 0.969149 TCTCAATGCTCACACGGTCT 59.031 50.000 0.00 0.00 0.00 3.85
2547 2937 1.067565 TCTCAATGCTCACACGGTCTC 60.068 52.381 0.00 0.00 0.00 3.36
2548 2938 0.678950 TCAATGCTCACACGGTCTCA 59.321 50.000 0.00 0.00 0.00 3.27
2549 2939 1.069978 TCAATGCTCACACGGTCTCAA 59.930 47.619 0.00 0.00 0.00 3.02
2550 2940 2.079158 CAATGCTCACACGGTCTCAAT 58.921 47.619 0.00 0.00 0.00 2.57
2551 2941 1.730501 ATGCTCACACGGTCTCAATG 58.269 50.000 0.00 0.00 0.00 2.82
2552 2942 0.950555 TGCTCACACGGTCTCAATGC 60.951 55.000 0.00 0.00 0.00 3.56
2553 2943 0.671781 GCTCACACGGTCTCAATGCT 60.672 55.000 0.00 0.00 0.00 3.79
2594 2984 4.235079 TGAATGTGGTCAATCCTAAGGG 57.765 45.455 0.00 0.00 37.07 3.95
2629 3033 4.142708 ACACATACACACAAACACACACAG 60.143 41.667 0.00 0.00 0.00 3.66
2639 3077 0.037697 ACACACACAGACACACACGT 60.038 50.000 0.00 0.00 0.00 4.49
2673 3117 4.937620 ACGCACACAATCACTGAGAATAAT 59.062 37.500 0.00 0.00 0.00 1.28
2718 3163 4.616181 CGTGAGGTTTTTCAGAGTTGTT 57.384 40.909 0.00 0.00 0.00 2.83
2769 3215 6.209391 CCCTCTCAATCTGGTTTTAATGTGTT 59.791 38.462 0.00 0.00 0.00 3.32
2838 3286 9.710900 CAGACCATGCACTATAGATTATGTTTA 57.289 33.333 6.78 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 170 2.202623 ATTCACGGCGCTCGAGTC 60.203 61.111 22.10 6.29 42.43 3.36
200 212 0.526524 GGTCACATCCTTCTCGAGCG 60.527 60.000 7.81 0.69 0.00 5.03
225 237 4.597507 ACTAGTCCAATTTGTCTCCCTTCA 59.402 41.667 0.00 0.00 0.00 3.02
237 249 6.282199 TCGAAGCTTTCTACTAGTCCAATT 57.718 37.500 0.00 0.00 0.00 2.32
260 275 0.175073 CCGCGAGTAGGTAAGGCTTT 59.825 55.000 8.23 0.00 0.00 3.51
359 384 1.611491 CAGTCGATAGGGAGAGAAGGC 59.389 57.143 0.00 0.00 0.00 4.35
360 385 1.611491 GCAGTCGATAGGGAGAGAAGG 59.389 57.143 0.00 0.00 0.00 3.46
361 386 2.552315 GAGCAGTCGATAGGGAGAGAAG 59.448 54.545 0.00 0.00 0.00 2.85
363 394 1.202830 GGAGCAGTCGATAGGGAGAGA 60.203 57.143 0.00 0.00 0.00 3.10
367 398 1.109920 GCAGGAGCAGTCGATAGGGA 61.110 60.000 0.00 0.00 41.58 4.20
372 403 0.106469 TCCTAGCAGGAGCAGTCGAT 60.106 55.000 1.25 0.00 40.06 3.59
399 432 2.431057 ACCAGCAGTTCTATTCGGTAGG 59.569 50.000 0.00 0.00 0.00 3.18
402 435 1.623811 ACACCAGCAGTTCTATTCGGT 59.376 47.619 0.00 0.00 0.00 4.69
403 436 2.002586 CACACCAGCAGTTCTATTCGG 58.997 52.381 0.00 0.00 0.00 4.30
409 443 2.833913 CCCCCACACCAGCAGTTCT 61.834 63.158 0.00 0.00 0.00 3.01
429 788 0.106719 TCATTTCTTCCCATCCCCGC 60.107 55.000 0.00 0.00 0.00 6.13
430 789 2.301346 CTTCATTTCTTCCCATCCCCG 58.699 52.381 0.00 0.00 0.00 5.73
632 999 3.307906 TGCAACGTAGGGCGAGGT 61.308 61.111 0.00 0.00 44.77 3.85
646 1013 2.892334 GAGGCAGTTTTCGCGTGCA 61.892 57.895 18.59 0.00 39.05 4.57
711 1078 0.033366 AATTTTGCAACTCGCCCACC 59.967 50.000 0.00 0.00 41.33 4.61
776 1143 5.012975 TCAATAAGAAAATGCCCCTGCTTTT 59.987 36.000 0.00 0.00 44.13 2.27
777 1144 4.531732 TCAATAAGAAAATGCCCCTGCTTT 59.468 37.500 0.00 0.00 38.71 3.51
778 1145 4.081476 GTCAATAAGAAAATGCCCCTGCTT 60.081 41.667 0.00 0.00 38.71 3.91
779 1146 3.448660 GTCAATAAGAAAATGCCCCTGCT 59.551 43.478 0.00 0.00 38.71 4.24
780 1147 3.734902 CGTCAATAAGAAAATGCCCCTGC 60.735 47.826 0.00 0.00 38.26 4.85
781 1148 3.181487 CCGTCAATAAGAAAATGCCCCTG 60.181 47.826 0.00 0.00 0.00 4.45
782 1149 3.023832 CCGTCAATAAGAAAATGCCCCT 58.976 45.455 0.00 0.00 0.00 4.79
783 1150 2.481276 GCCGTCAATAAGAAAATGCCCC 60.481 50.000 0.00 0.00 0.00 5.80
784 1151 2.481276 GGCCGTCAATAAGAAAATGCCC 60.481 50.000 0.00 0.00 0.00 5.36
785 1152 2.427095 AGGCCGTCAATAAGAAAATGCC 59.573 45.455 0.00 0.00 36.62 4.40
786 1153 3.782889 AGGCCGTCAATAAGAAAATGC 57.217 42.857 0.00 0.00 0.00 3.56
787 1154 5.220854 CCTGTAGGCCGTCAATAAGAAAATG 60.221 44.000 0.00 0.00 0.00 2.32
788 1155 4.881850 CCTGTAGGCCGTCAATAAGAAAAT 59.118 41.667 0.00 0.00 0.00 1.82
865 1232 3.935828 CTGGAATCTCCTTCTTCCGTTTC 59.064 47.826 0.00 0.00 43.22 2.78
876 1243 1.506025 GGAAGCCTCTGGAATCTCCT 58.494 55.000 0.00 0.00 37.46 3.69
918 1286 1.153469 CAGGGGAGAAGAGAAGCGC 60.153 63.158 0.00 0.00 0.00 5.92
986 1354 3.320826 TGTGATTGTGGAGAACGAAGAGA 59.679 43.478 0.00 0.00 0.00 3.10
991 1359 2.143122 GCTTGTGATTGTGGAGAACGA 58.857 47.619 0.00 0.00 0.00 3.85
997 1365 1.133513 AGTTGGGCTTGTGATTGTGGA 60.134 47.619 0.00 0.00 0.00 4.02
1004 1372 1.227823 CGTGGAGTTGGGCTTGTGA 60.228 57.895 0.00 0.00 0.00 3.58
1018 1386 2.819595 CAATCCCGCTCACCGTGG 60.820 66.667 0.00 0.00 43.15 4.94
1024 1392 0.465705 GACTGATCCAATCCCGCTCA 59.534 55.000 0.00 0.00 0.00 4.26
1091 1472 3.617538 GCTTCGTCGCGCGCTAAT 61.618 61.111 30.48 0.00 41.07 1.73
1113 1498 1.827969 ACCATCGCTCTCACTTAGCTT 59.172 47.619 0.00 0.00 37.85 3.74
1114 1499 1.135915 CACCATCGCTCTCACTTAGCT 59.864 52.381 0.00 0.00 37.85 3.32
1115 1500 1.565305 CACCATCGCTCTCACTTAGC 58.435 55.000 0.00 0.00 36.60 3.09
1116 1501 1.478510 ACCACCATCGCTCTCACTTAG 59.521 52.381 0.00 0.00 0.00 2.18
1125 1510 1.450848 CATGAGCACCACCATCGCT 60.451 57.895 0.00 0.00 39.12 4.93
1200 1585 1.890510 GTCGGGGAACGCAAACAGT 60.891 57.895 0.00 0.00 43.53 3.55
1385 1770 0.695347 CACCAGAGCCCTCTTTTCCT 59.305 55.000 0.00 0.00 37.98 3.36
1399 1784 4.752879 CGGGCCGTACACCACCAG 62.753 72.222 19.97 0.00 0.00 4.00
1881 2266 5.360714 GGCAAAGAGGAACATATCAATTCCA 59.639 40.000 10.96 0.00 45.90 3.53
1935 2320 4.641396 TCTGATTTCAACGAACTGGACAT 58.359 39.130 0.00 0.00 0.00 3.06
1948 2333 6.236558 AGAGATGATCTTGCTCTGATTTCA 57.763 37.500 0.00 0.00 37.60 2.69
2030 2418 1.963515 GCACCACCTGTTCCAGATTTT 59.036 47.619 0.00 0.00 32.44 1.82
2079 2467 2.350057 ATGAGCTAGCGAGTAGTGGA 57.650 50.000 9.55 0.00 0.00 4.02
2080 2468 3.566322 ACTTATGAGCTAGCGAGTAGTGG 59.434 47.826 9.55 0.00 0.00 4.00
2082 2470 5.613329 AGTACTTATGAGCTAGCGAGTAGT 58.387 41.667 9.55 12.42 0.00 2.73
2083 2471 6.347888 GGAAGTACTTATGAGCTAGCGAGTAG 60.348 46.154 8.42 7.17 0.00 2.57
2084 2472 5.469421 GGAAGTACTTATGAGCTAGCGAGTA 59.531 44.000 8.42 10.68 0.00 2.59
2088 2476 4.320641 GGAGGAAGTACTTATGAGCTAGCG 60.321 50.000 8.42 0.00 0.00 4.26
2098 2486 6.600882 AAATTCAGACGGAGGAAGTACTTA 57.399 37.500 8.42 0.00 0.00 2.24
2099 2487 5.485209 AAATTCAGACGGAGGAAGTACTT 57.515 39.130 8.13 8.13 0.00 2.24
2100 2488 6.793505 ATAAATTCAGACGGAGGAAGTACT 57.206 37.500 0.00 0.00 0.00 2.73
2101 2489 7.652507 CCTAATAAATTCAGACGGAGGAAGTAC 59.347 40.741 0.00 0.00 0.00 2.73
2102 2490 7.686127 GCCTAATAAATTCAGACGGAGGAAGTA 60.686 40.741 0.00 0.00 0.00 2.24
2103 2491 6.583562 CCTAATAAATTCAGACGGAGGAAGT 58.416 40.000 0.00 0.00 0.00 3.01
2104 2492 5.467063 GCCTAATAAATTCAGACGGAGGAAG 59.533 44.000 0.00 0.00 0.00 3.46
2105 2493 5.365619 GCCTAATAAATTCAGACGGAGGAA 58.634 41.667 0.00 0.00 0.00 3.36
2106 2494 4.202326 GGCCTAATAAATTCAGACGGAGGA 60.202 45.833 0.00 0.00 0.00 3.71
2107 2495 4.065789 GGCCTAATAAATTCAGACGGAGG 58.934 47.826 0.00 0.00 0.00 4.30
2108 2496 4.065789 GGGCCTAATAAATTCAGACGGAG 58.934 47.826 0.84 0.00 0.00 4.63
2109 2497 3.456644 TGGGCCTAATAAATTCAGACGGA 59.543 43.478 4.53 0.00 0.00 4.69
2110 2498 3.815809 TGGGCCTAATAAATTCAGACGG 58.184 45.455 4.53 0.00 0.00 4.79
2111 2499 4.260620 CGTTGGGCCTAATAAATTCAGACG 60.261 45.833 4.25 0.00 0.00 4.18
2112 2500 4.879545 TCGTTGGGCCTAATAAATTCAGAC 59.120 41.667 4.25 0.00 0.00 3.51
2113 2501 4.879545 GTCGTTGGGCCTAATAAATTCAGA 59.120 41.667 4.25 0.00 0.00 3.27
2114 2502 4.260620 CGTCGTTGGGCCTAATAAATTCAG 60.261 45.833 4.25 0.00 0.00 3.02
2115 2503 3.623960 CGTCGTTGGGCCTAATAAATTCA 59.376 43.478 4.25 0.00 0.00 2.57
2116 2504 3.872771 TCGTCGTTGGGCCTAATAAATTC 59.127 43.478 4.25 0.00 0.00 2.17
2117 2505 3.876341 TCGTCGTTGGGCCTAATAAATT 58.124 40.909 4.25 0.00 0.00 1.82
2118 2506 3.547054 TCGTCGTTGGGCCTAATAAAT 57.453 42.857 4.25 0.00 0.00 1.40
2119 2507 3.331478 TTCGTCGTTGGGCCTAATAAA 57.669 42.857 4.25 0.00 0.00 1.40
2120 2508 3.331478 TTTCGTCGTTGGGCCTAATAA 57.669 42.857 4.25 0.00 0.00 1.40
2121 2509 3.002102 GTTTTCGTCGTTGGGCCTAATA 58.998 45.455 4.25 0.00 0.00 0.98
2122 2510 1.808343 GTTTTCGTCGTTGGGCCTAAT 59.192 47.619 4.25 0.00 0.00 1.73
2123 2511 1.202675 AGTTTTCGTCGTTGGGCCTAA 60.203 47.619 4.53 0.00 0.00 2.69
2124 2512 0.393820 AGTTTTCGTCGTTGGGCCTA 59.606 50.000 4.53 0.00 0.00 3.93
2125 2513 0.883370 GAGTTTTCGTCGTTGGGCCT 60.883 55.000 4.53 0.00 0.00 5.19
2126 2514 1.572941 GAGTTTTCGTCGTTGGGCC 59.427 57.895 0.00 0.00 0.00 5.80
2127 2515 1.161563 TGGAGTTTTCGTCGTTGGGC 61.162 55.000 0.00 0.00 0.00 5.36
2128 2516 0.865769 CTGGAGTTTTCGTCGTTGGG 59.134 55.000 0.00 0.00 0.00 4.12
2129 2517 0.234884 GCTGGAGTTTTCGTCGTTGG 59.765 55.000 0.00 0.00 0.00 3.77
2130 2518 0.934496 TGCTGGAGTTTTCGTCGTTG 59.066 50.000 0.00 0.00 0.00 4.10
2131 2519 1.217882 CTGCTGGAGTTTTCGTCGTT 58.782 50.000 0.00 0.00 0.00 3.85
2132 2520 0.600255 CCTGCTGGAGTTTTCGTCGT 60.600 55.000 2.92 0.00 34.57 4.34
2133 2521 0.319555 TCCTGCTGGAGTTTTCGTCG 60.320 55.000 8.48 0.00 37.46 5.12
2134 2522 1.801178 CTTCCTGCTGGAGTTTTCGTC 59.199 52.381 12.54 0.00 44.24 4.20
2135 2523 1.543429 CCTTCCTGCTGGAGTTTTCGT 60.543 52.381 12.54 0.00 44.24 3.85
2136 2524 1.160137 CCTTCCTGCTGGAGTTTTCG 58.840 55.000 12.54 0.00 44.24 3.46
2137 2525 0.884514 GCCTTCCTGCTGGAGTTTTC 59.115 55.000 12.54 0.00 44.24 2.29
2138 2526 0.185901 TGCCTTCCTGCTGGAGTTTT 59.814 50.000 12.54 0.00 44.24 2.43
2139 2527 0.538287 GTGCCTTCCTGCTGGAGTTT 60.538 55.000 12.54 0.00 44.24 2.66
2140 2528 1.073897 GTGCCTTCCTGCTGGAGTT 59.926 57.895 12.54 0.00 44.24 3.01
2141 2529 1.708993 TTGTGCCTTCCTGCTGGAGT 61.709 55.000 12.54 0.00 44.24 3.85
2142 2530 1.073722 TTGTGCCTTCCTGCTGGAG 59.926 57.895 12.54 3.55 44.24 3.86
2143 2531 1.228245 GTTGTGCCTTCCTGCTGGA 60.228 57.895 8.48 8.48 41.36 3.86
2144 2532 1.108727 TTGTTGTGCCTTCCTGCTGG 61.109 55.000 2.58 2.58 0.00 4.85
2145 2533 0.963962 ATTGTTGTGCCTTCCTGCTG 59.036 50.000 0.00 0.00 0.00 4.41
2146 2534 1.708341 AATTGTTGTGCCTTCCTGCT 58.292 45.000 0.00 0.00 0.00 4.24
2147 2535 2.558359 AGTAATTGTTGTGCCTTCCTGC 59.442 45.455 0.00 0.00 0.00 4.85
2148 2536 4.321230 GGAAGTAATTGTTGTGCCTTCCTG 60.321 45.833 8.59 0.00 42.89 3.86
2149 2537 3.826729 GGAAGTAATTGTTGTGCCTTCCT 59.173 43.478 8.59 0.00 42.89 3.36
2150 2538 3.826729 AGGAAGTAATTGTTGTGCCTTCC 59.173 43.478 7.92 7.92 45.29 3.46
2151 2539 5.453567 AAGGAAGTAATTGTTGTGCCTTC 57.546 39.130 0.00 0.00 28.95 3.46
2152 2540 5.869649 AAAGGAAGTAATTGTTGTGCCTT 57.130 34.783 0.00 0.00 36.14 4.35
2153 2541 6.969993 TTAAAGGAAGTAATTGTTGTGCCT 57.030 33.333 0.00 0.00 0.00 4.75
2154 2542 9.869757 AATATTAAAGGAAGTAATTGTTGTGCC 57.130 29.630 0.00 0.00 0.00 5.01
2161 2549 9.233232 GCACGGAAATATTAAAGGAAGTAATTG 57.767 33.333 0.00 0.00 0.00 2.32
2162 2550 9.185680 AGCACGGAAATATTAAAGGAAGTAATT 57.814 29.630 0.00 0.00 0.00 1.40
2163 2551 8.747538 AGCACGGAAATATTAAAGGAAGTAAT 57.252 30.769 0.00 0.00 0.00 1.89
2164 2552 8.570068 AAGCACGGAAATATTAAAGGAAGTAA 57.430 30.769 0.00 0.00 0.00 2.24
2165 2553 9.321562 CTAAGCACGGAAATATTAAAGGAAGTA 57.678 33.333 0.00 0.00 0.00 2.24
2166 2554 7.827729 ACTAAGCACGGAAATATTAAAGGAAGT 59.172 33.333 0.00 0.00 0.00 3.01
2167 2555 8.122952 CACTAAGCACGGAAATATTAAAGGAAG 58.877 37.037 0.00 0.00 0.00 3.46
2168 2556 7.608761 ACACTAAGCACGGAAATATTAAAGGAA 59.391 33.333 0.00 0.00 0.00 3.36
2169 2557 7.107542 ACACTAAGCACGGAAATATTAAAGGA 58.892 34.615 0.00 0.00 0.00 3.36
2170 2558 7.316544 ACACTAAGCACGGAAATATTAAAGG 57.683 36.000 0.00 0.00 0.00 3.11
2171 2559 7.407337 GGACACTAAGCACGGAAATATTAAAG 58.593 38.462 0.00 0.00 0.00 1.85
2172 2560 6.036300 CGGACACTAAGCACGGAAATATTAAA 59.964 38.462 0.00 0.00 0.00 1.52
2173 2561 5.521010 CGGACACTAAGCACGGAAATATTAA 59.479 40.000 0.00 0.00 0.00 1.40
2174 2562 5.045215 CGGACACTAAGCACGGAAATATTA 58.955 41.667 0.00 0.00 0.00 0.98
2175 2563 3.869246 CGGACACTAAGCACGGAAATATT 59.131 43.478 0.00 0.00 0.00 1.28
2176 2564 3.131577 TCGGACACTAAGCACGGAAATAT 59.868 43.478 0.00 0.00 0.00 1.28
2177 2565 2.492881 TCGGACACTAAGCACGGAAATA 59.507 45.455 0.00 0.00 0.00 1.40
2178 2566 1.274167 TCGGACACTAAGCACGGAAAT 59.726 47.619 0.00 0.00 0.00 2.17
2179 2567 0.675083 TCGGACACTAAGCACGGAAA 59.325 50.000 0.00 0.00 0.00 3.13
2180 2568 0.892755 ATCGGACACTAAGCACGGAA 59.107 50.000 0.00 0.00 0.00 4.30
2181 2569 0.892755 AATCGGACACTAAGCACGGA 59.107 50.000 0.00 0.00 0.00 4.69
2182 2570 2.460918 CTAATCGGACACTAAGCACGG 58.539 52.381 0.00 0.00 0.00 4.94
2183 2571 2.098607 TCCTAATCGGACACTAAGCACG 59.901 50.000 0.00 0.00 36.69 5.34
2184 2572 3.795623 TCCTAATCGGACACTAAGCAC 57.204 47.619 0.00 0.00 36.69 4.40
2185 2573 5.138276 ACTATCCTAATCGGACACTAAGCA 58.862 41.667 0.00 0.00 46.80 3.91
2186 2574 5.241064 TGACTATCCTAATCGGACACTAAGC 59.759 44.000 0.00 0.00 46.80 3.09
2187 2575 6.879276 TGACTATCCTAATCGGACACTAAG 57.121 41.667 0.00 0.00 46.80 2.18
2188 2576 8.162085 ACTATGACTATCCTAATCGGACACTAA 58.838 37.037 0.00 0.00 46.80 2.24
2189 2577 7.606839 CACTATGACTATCCTAATCGGACACTA 59.393 40.741 0.00 0.00 46.80 2.74
2190 2578 6.431543 CACTATGACTATCCTAATCGGACACT 59.568 42.308 0.00 0.00 46.80 3.55
2191 2579 6.349445 CCACTATGACTATCCTAATCGGACAC 60.349 46.154 0.00 0.00 46.80 3.67
2192 2580 5.710567 CCACTATGACTATCCTAATCGGACA 59.289 44.000 0.00 0.00 46.80 4.02
2193 2581 5.944599 TCCACTATGACTATCCTAATCGGAC 59.055 44.000 0.00 0.00 46.80 4.79
2195 2583 6.181190 TCTCCACTATGACTATCCTAATCGG 58.819 44.000 0.00 0.00 0.00 4.18
2196 2584 7.106890 TCTCTCCACTATGACTATCCTAATCG 58.893 42.308 0.00 0.00 0.00 3.34
2197 2585 9.474313 AATCTCTCCACTATGACTATCCTAATC 57.526 37.037 0.00 0.00 0.00 1.75
2199 2587 9.967451 CTAATCTCTCCACTATGACTATCCTAA 57.033 37.037 0.00 0.00 0.00 2.69
2200 2588 8.553153 CCTAATCTCTCCACTATGACTATCCTA 58.447 40.741 0.00 0.00 0.00 2.94
2201 2589 7.410174 CCTAATCTCTCCACTATGACTATCCT 58.590 42.308 0.00 0.00 0.00 3.24
2202 2590 6.096282 GCCTAATCTCTCCACTATGACTATCC 59.904 46.154 0.00 0.00 0.00 2.59
2203 2591 6.889722 AGCCTAATCTCTCCACTATGACTATC 59.110 42.308 0.00 0.00 0.00 2.08
2204 2592 6.799827 AGCCTAATCTCTCCACTATGACTAT 58.200 40.000 0.00 0.00 0.00 2.12
2205 2593 6.207509 AGCCTAATCTCTCCACTATGACTA 57.792 41.667 0.00 0.00 0.00 2.59
2206 2594 5.073437 AGCCTAATCTCTCCACTATGACT 57.927 43.478 0.00 0.00 0.00 3.41
2207 2595 6.007703 ACTAGCCTAATCTCTCCACTATGAC 58.992 44.000 0.00 0.00 0.00 3.06
2208 2596 6.183361 TGACTAGCCTAATCTCTCCACTATGA 60.183 42.308 0.00 0.00 0.00 2.15
2209 2597 6.007076 TGACTAGCCTAATCTCTCCACTATG 58.993 44.000 0.00 0.00 0.00 2.23
2210 2598 6.207509 TGACTAGCCTAATCTCTCCACTAT 57.792 41.667 0.00 0.00 0.00 2.12
2211 2599 5.648330 TGACTAGCCTAATCTCTCCACTA 57.352 43.478 0.00 0.00 0.00 2.74
2212 2600 4.528076 TGACTAGCCTAATCTCTCCACT 57.472 45.455 0.00 0.00 0.00 4.00
2213 2601 6.007703 ACTATGACTAGCCTAATCTCTCCAC 58.992 44.000 0.00 0.00 0.00 4.02
2214 2602 6.007076 CACTATGACTAGCCTAATCTCTCCA 58.993 44.000 0.00 0.00 0.00 3.86
2215 2603 5.417580 CCACTATGACTAGCCTAATCTCTCC 59.582 48.000 0.00 0.00 0.00 3.71
2216 2604 6.242396 TCCACTATGACTAGCCTAATCTCTC 58.758 44.000 0.00 0.00 0.00 3.20
2217 2605 6.044989 TCTCCACTATGACTAGCCTAATCTCT 59.955 42.308 0.00 0.00 0.00 3.10
2218 2606 6.242396 TCTCCACTATGACTAGCCTAATCTC 58.758 44.000 0.00 0.00 0.00 2.75
2219 2607 6.207509 TCTCCACTATGACTAGCCTAATCT 57.792 41.667 0.00 0.00 0.00 2.40
2220 2608 7.475137 AATCTCCACTATGACTAGCCTAATC 57.525 40.000 0.00 0.00 0.00 1.75
2221 2609 7.617723 CCTAATCTCCACTATGACTAGCCTAAT 59.382 40.741 0.00 0.00 0.00 1.73
2222 2610 6.948886 CCTAATCTCCACTATGACTAGCCTAA 59.051 42.308 0.00 0.00 0.00 2.69
2223 2611 6.486056 CCTAATCTCCACTATGACTAGCCTA 58.514 44.000 0.00 0.00 0.00 3.93
2224 2612 5.329399 CCTAATCTCCACTATGACTAGCCT 58.671 45.833 0.00 0.00 0.00 4.58
2225 2613 4.081917 GCCTAATCTCCACTATGACTAGCC 60.082 50.000 0.00 0.00 0.00 3.93
2226 2614 4.770010 AGCCTAATCTCCACTATGACTAGC 59.230 45.833 0.00 0.00 0.00 3.42
2227 2615 8.588290 ATTAGCCTAATCTCCACTATGACTAG 57.412 38.462 0.00 0.00 0.00 2.57
2228 2616 8.170730 TGATTAGCCTAATCTCCACTATGACTA 58.829 37.037 21.72 0.00 43.79 2.59
2229 2617 7.013220 TGATTAGCCTAATCTCCACTATGACT 58.987 38.462 21.72 0.00 43.79 3.41
2230 2618 7.233389 TGATTAGCCTAATCTCCACTATGAC 57.767 40.000 21.72 0.00 43.79 3.06
2231 2619 9.194972 CTATGATTAGCCTAATCTCCACTATGA 57.805 37.037 21.72 2.68 43.79 2.15
2232 2620 8.976353 ACTATGATTAGCCTAATCTCCACTATG 58.024 37.037 21.72 8.66 43.79 2.23
2233 2621 8.976353 CACTATGATTAGCCTAATCTCCACTAT 58.024 37.037 21.72 10.65 43.79 2.12
2234 2622 7.397476 CCACTATGATTAGCCTAATCTCCACTA 59.603 40.741 21.72 4.58 43.79 2.74
2235 2623 6.212388 CCACTATGATTAGCCTAATCTCCACT 59.788 42.308 21.72 7.36 43.79 4.00
2236 2624 6.014156 ACCACTATGATTAGCCTAATCTCCAC 60.014 42.308 21.72 0.46 43.79 4.02
2237 2625 6.084738 ACCACTATGATTAGCCTAATCTCCA 58.915 40.000 21.72 6.44 43.79 3.86
2238 2626 6.613153 ACCACTATGATTAGCCTAATCTCC 57.387 41.667 21.72 1.12 43.79 3.71
2239 2627 8.356000 ACTACCACTATGATTAGCCTAATCTC 57.644 38.462 21.72 2.55 43.79 2.75
2240 2628 9.469097 CTACTACCACTATGATTAGCCTAATCT 57.531 37.037 21.72 11.91 43.79 2.40
2241 2629 9.245481 ACTACTACCACTATGATTAGCCTAATC 57.755 37.037 16.03 16.03 43.73 1.75
2245 2633 9.603189 AATTACTACTACCACTATGATTAGCCT 57.397 33.333 0.00 0.00 0.00 4.58
2283 2671 9.914131 TGTGACTAGTATAATAACATGCATCTC 57.086 33.333 0.00 0.00 0.00 2.75
2287 2675 9.271828 CCATTGTGACTAGTATAATAACATGCA 57.728 33.333 0.00 0.00 0.00 3.96
2288 2676 8.721478 CCCATTGTGACTAGTATAATAACATGC 58.279 37.037 0.00 0.00 0.00 4.06
2289 2677 9.778741 ACCCATTGTGACTAGTATAATAACATG 57.221 33.333 0.00 0.00 0.00 3.21
2290 2678 9.998106 GACCCATTGTGACTAGTATAATAACAT 57.002 33.333 0.00 0.00 0.00 2.71
2291 2679 8.139350 CGACCCATTGTGACTAGTATAATAACA 58.861 37.037 0.00 0.00 0.00 2.41
2292 2680 8.139989 ACGACCCATTGTGACTAGTATAATAAC 58.860 37.037 0.00 0.00 0.00 1.89
2293 2681 8.241497 ACGACCCATTGTGACTAGTATAATAA 57.759 34.615 0.00 0.00 0.00 1.40
2294 2682 7.828508 ACGACCCATTGTGACTAGTATAATA 57.171 36.000 0.00 0.00 0.00 0.98
2295 2683 6.726490 ACGACCCATTGTGACTAGTATAAT 57.274 37.500 0.00 0.00 0.00 1.28
2296 2684 7.340232 AGTTACGACCCATTGTGACTAGTATAA 59.660 37.037 0.00 0.00 37.30 0.98
2297 2685 6.830324 AGTTACGACCCATTGTGACTAGTATA 59.170 38.462 0.00 0.00 37.30 1.47
2298 2686 5.655532 AGTTACGACCCATTGTGACTAGTAT 59.344 40.000 0.00 0.00 37.30 2.12
2299 2687 5.012239 AGTTACGACCCATTGTGACTAGTA 58.988 41.667 0.00 0.00 37.30 1.82
2300 2688 3.830755 AGTTACGACCCATTGTGACTAGT 59.169 43.478 0.00 0.00 37.30 2.57
2301 2689 4.451629 AGTTACGACCCATTGTGACTAG 57.548 45.455 0.00 0.00 37.30 2.57
2302 2690 4.877378 AAGTTACGACCCATTGTGACTA 57.123 40.909 0.00 0.00 37.94 2.59
2303 2691 3.764237 AAGTTACGACCCATTGTGACT 57.236 42.857 0.00 0.00 40.04 3.41
2304 2692 4.624452 GTCTAAGTTACGACCCATTGTGAC 59.376 45.833 0.00 0.00 0.00 3.67
2305 2693 4.525487 AGTCTAAGTTACGACCCATTGTGA 59.475 41.667 0.00 0.00 0.00 3.58
2306 2694 4.817517 AGTCTAAGTTACGACCCATTGTG 58.182 43.478 0.00 0.00 0.00 3.33
2307 2695 5.713861 ACTAGTCTAAGTTACGACCCATTGT 59.286 40.000 0.00 0.00 0.00 2.71
2308 2696 6.205101 ACTAGTCTAAGTTACGACCCATTG 57.795 41.667 0.00 0.00 0.00 2.82
2309 2697 7.944729 TTACTAGTCTAAGTTACGACCCATT 57.055 36.000 0.00 0.00 0.00 3.16
2310 2698 9.804977 ATATTACTAGTCTAAGTTACGACCCAT 57.195 33.333 0.00 0.46 0.00 4.00
2311 2699 9.060347 CATATTACTAGTCTAAGTTACGACCCA 57.940 37.037 0.00 0.00 0.00 4.51
2312 2700 9.061435 ACATATTACTAGTCTAAGTTACGACCC 57.939 37.037 0.00 0.00 0.00 4.46
2335 2723 9.021807 ACGCCAATAGACTAGTAACATATACAT 57.978 33.333 0.00 0.00 0.00 2.29
2336 2724 8.400184 ACGCCAATAGACTAGTAACATATACA 57.600 34.615 0.00 0.00 0.00 2.29
2339 2727 9.856488 CATTACGCCAATAGACTAGTAACATAT 57.144 33.333 0.00 0.00 0.00 1.78
2340 2728 8.853126 ACATTACGCCAATAGACTAGTAACATA 58.147 33.333 0.00 0.00 0.00 2.29
2341 2729 7.723324 ACATTACGCCAATAGACTAGTAACAT 58.277 34.615 0.00 0.00 0.00 2.71
2342 2730 7.104043 ACATTACGCCAATAGACTAGTAACA 57.896 36.000 0.00 0.00 0.00 2.41
2343 2731 8.962111 GTTACATTACGCCAATAGACTAGTAAC 58.038 37.037 0.00 0.00 32.65 2.50
2344 2732 8.685427 TGTTACATTACGCCAATAGACTAGTAA 58.315 33.333 0.00 0.00 0.00 2.24
2345 2733 8.224389 TGTTACATTACGCCAATAGACTAGTA 57.776 34.615 0.00 0.00 0.00 1.82
2346 2734 7.104043 TGTTACATTACGCCAATAGACTAGT 57.896 36.000 0.00 0.00 0.00 2.57
2347 2735 8.589335 AATGTTACATTACGCCAATAGACTAG 57.411 34.615 9.02 0.00 0.00 2.57
2348 2736 8.951787 AAATGTTACATTACGCCAATAGACTA 57.048 30.769 11.23 0.00 0.00 2.59
2349 2737 7.859325 AAATGTTACATTACGCCAATAGACT 57.141 32.000 11.23 0.00 0.00 3.24
2375 2763 9.121658 GGCTCTTTTGCTAGTAACCTAATAAAT 57.878 33.333 0.00 0.00 0.00 1.40
2383 2771 2.007608 CGGGCTCTTTTGCTAGTAACC 58.992 52.381 0.00 0.00 0.00 2.85
2420 2808 1.533129 GCGTGTGTGTTTTTCTGTCCC 60.533 52.381 0.00 0.00 0.00 4.46
2422 2810 2.351726 AGAGCGTGTGTGTTTTTCTGTC 59.648 45.455 0.00 0.00 0.00 3.51
2423 2811 2.356135 AGAGCGTGTGTGTTTTTCTGT 58.644 42.857 0.00 0.00 0.00 3.41
2424 2812 3.405170 AAGAGCGTGTGTGTTTTTCTG 57.595 42.857 0.00 0.00 0.00 3.02
2425 2813 4.201881 GGTTAAGAGCGTGTGTGTTTTTCT 60.202 41.667 0.00 0.00 0.00 2.52
2426 2814 4.033019 GGTTAAGAGCGTGTGTGTTTTTC 58.967 43.478 0.00 0.00 0.00 2.29
2522 2912 1.873486 CGTGTGAGCATTGAGACCACA 60.873 52.381 0.00 0.00 35.65 4.17
2537 2927 0.792640 GTGAGCATTGAGACCGTGTG 59.207 55.000 0.00 0.00 0.00 3.82
2538 2928 0.392706 TGTGAGCATTGAGACCGTGT 59.607 50.000 0.00 0.00 0.00 4.49
2539 2929 0.792640 GTGTGAGCATTGAGACCGTG 59.207 55.000 0.00 0.00 0.00 4.94
2540 2930 0.392706 TGTGTGAGCATTGAGACCGT 59.607 50.000 0.00 0.00 0.00 4.83
2541 2931 1.195448 GTTGTGTGAGCATTGAGACCG 59.805 52.381 0.00 0.00 0.00 4.79
2542 2932 1.195448 CGTTGTGTGAGCATTGAGACC 59.805 52.381 0.00 0.00 0.00 3.85
2543 2933 2.135139 TCGTTGTGTGAGCATTGAGAC 58.865 47.619 0.00 0.00 0.00 3.36
2544 2934 2.524569 TCGTTGTGTGAGCATTGAGA 57.475 45.000 0.00 0.00 0.00 3.27
2545 2935 3.607422 TTTCGTTGTGTGAGCATTGAG 57.393 42.857 0.00 0.00 0.00 3.02
2546 2936 3.127721 TGTTTTCGTTGTGTGAGCATTGA 59.872 39.130 0.00 0.00 0.00 2.57
2547 2937 3.240401 GTGTTTTCGTTGTGTGAGCATTG 59.760 43.478 0.00 0.00 0.00 2.82
2548 2938 3.119673 TGTGTTTTCGTTGTGTGAGCATT 60.120 39.130 0.00 0.00 0.00 3.56
2549 2939 2.421775 TGTGTTTTCGTTGTGTGAGCAT 59.578 40.909 0.00 0.00 0.00 3.79
2550 2940 1.807142 TGTGTTTTCGTTGTGTGAGCA 59.193 42.857 0.00 0.00 0.00 4.26
2551 2941 2.535934 TGTGTTTTCGTTGTGTGAGC 57.464 45.000 0.00 0.00 0.00 4.26
2552 2942 5.092105 TCAAATGTGTTTTCGTTGTGTGAG 58.908 37.500 0.00 0.00 0.00 3.51
2553 2943 5.048153 TCAAATGTGTTTTCGTTGTGTGA 57.952 34.783 0.00 0.00 0.00 3.58
2594 2984 3.759086 TGTGTATGTGTGAGAGAGAGACC 59.241 47.826 0.00 0.00 0.00 3.85
2718 3163 5.384063 AAAACATTGATAACCACGCATGA 57.616 34.783 0.00 0.00 0.00 3.07
2769 3215 4.328440 CGGCGATCCAAATTGCAAATAAAA 59.672 37.500 1.71 0.00 43.18 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.