Multiple sequence alignment - TraesCS7B01G139100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G139100 chr7B 100.000 7016 0 0 1 7016 175618009 175610994 0.000000e+00 12957.0
1 TraesCS7B01G139100 chr7B 96.086 3475 78 14 3577 7008 175721804 175718345 0.000000e+00 5611.0
2 TraesCS7B01G139100 chr7B 93.170 1962 100 15 3576 5528 175193136 175195072 0.000000e+00 2850.0
3 TraesCS7B01G139100 chr7B 98.539 890 13 0 987 1876 175722988 175722099 0.000000e+00 1572.0
4 TraesCS7B01G139100 chr7B 97.905 859 18 0 1 859 175723844 175722986 0.000000e+00 1487.0
5 TraesCS7B01G139100 chr7B 88.510 792 49 19 722 1487 175184585 175185360 0.000000e+00 920.0
6 TraesCS7B01G139100 chr7B 98.322 298 5 0 1959 2256 175722100 175721803 2.240000e-144 523.0
7 TraesCS7B01G139100 chr7B 89.262 298 9 5 1959 2256 175192863 175193137 1.120000e-92 351.0
8 TraesCS7B01G139100 chr7B 94.444 108 6 0 1769 1876 175192757 175192864 4.350000e-37 167.0
9 TraesCS7B01G139100 chr7A 97.347 2111 40 8 3577 5678 236080325 236082428 0.000000e+00 3574.0
10 TraesCS7B01G139100 chr7A 97.345 2109 40 8 3577 5676 236324130 236326231 0.000000e+00 3570.0
11 TraesCS7B01G139100 chr7A 92.898 2112 112 18 3577 5678 236349568 236351651 0.000000e+00 3035.0
12 TraesCS7B01G139100 chr7A 91.106 1619 103 20 3838 5446 236380877 236382464 0.000000e+00 2154.0
13 TraesCS7B01G139100 chr7A 91.027 1616 101 22 3838 5443 236355299 236356880 0.000000e+00 2141.0
14 TraesCS7B01G139100 chr7A 93.229 1344 69 11 5675 7008 236082456 236083787 0.000000e+00 1958.0
15 TraesCS7B01G139100 chr7A 92.479 1396 61 14 495 1876 236078665 236080030 0.000000e+00 1956.0
16 TraesCS7B01G139100 chr7A 92.192 1396 60 16 495 1876 236322475 236323835 0.000000e+00 1929.0
17 TraesCS7B01G139100 chr7A 88.157 1351 107 30 5675 7008 236377137 236378451 0.000000e+00 1559.0
18 TraesCS7B01G139100 chr7A 87.463 1356 107 25 5675 7008 236431129 236432443 0.000000e+00 1504.0
19 TraesCS7B01G139100 chr7A 93.161 775 38 9 5675 6437 236351679 236352450 0.000000e+00 1123.0
20 TraesCS7B01G139100 chr7A 89.567 901 51 18 722 1595 236348160 236349044 0.000000e+00 1103.0
21 TraesCS7B01G139100 chr7A 92.422 739 31 6 495 1232 236313145 236313859 0.000000e+00 1031.0
22 TraesCS7B01G139100 chr7A 94.747 533 22 2 6151 6681 236328187 236328715 0.000000e+00 824.0
23 TraesCS7B01G139100 chr7A 96.920 487 14 1 5675 6161 236326261 236326746 0.000000e+00 815.0
24 TraesCS7B01G139100 chr7A 86.490 755 53 15 6261 7002 236461490 236462208 0.000000e+00 784.0
25 TraesCS7B01G139100 chr7A 89.552 603 49 9 5675 6268 236459068 236459665 0.000000e+00 752.0
26 TraesCS7B01G139100 chr7A 93.162 351 24 0 1 351 236311805 236312155 3.750000e-142 516.0
27 TraesCS7B01G139100 chr7A 92.351 353 27 0 1 353 236321136 236321488 2.920000e-138 503.0
28 TraesCS7B01G139100 chr7A 96.980 298 9 0 1959 2256 236080029 236080326 1.050000e-137 501.0
29 TraesCS7B01G139100 chr7A 96.980 298 9 0 1959 2256 236323834 236324131 1.050000e-137 501.0
30 TraesCS7B01G139100 chr7A 89.308 318 10 7 1940 2256 236349275 236349569 1.850000e-100 377.0
31 TraesCS7B01G139100 chr7A 92.562 242 15 3 5436 5676 236458799 236459038 1.870000e-90 344.0
32 TraesCS7B01G139100 chr7A 92.469 239 15 3 5436 5673 236376868 236377104 8.720000e-89 339.0
33 TraesCS7B01G139100 chr7A 90.574 244 16 4 5436 5678 236430864 236431101 4.080000e-82 316.0
34 TraesCS7B01G139100 chr7A 95.855 193 5 2 6818 7008 236328787 236328978 6.830000e-80 309.0
35 TraesCS7B01G139100 chr7A 94.156 154 9 0 6818 6971 236353155 236353308 1.180000e-57 235.0
36 TraesCS7B01G139100 chr7A 94.521 146 8 0 1741 1886 236349045 236349190 7.080000e-55 226.0
37 TraesCS7B01G139100 chr7A 94.326 141 8 0 357 497 236321529 236321669 4.260000e-52 217.0
38 TraesCS7B01G139100 chr7A 92.908 141 10 0 357 497 236312198 236312338 9.220000e-49 206.0
39 TraesCS7B01G139100 chr7A 96.774 93 2 1 1875 1966 134734119 134734027 3.390000e-33 154.0
40 TraesCS7B01G139100 chr7A 95.745 94 3 1 1872 1965 556574278 556574370 4.380000e-32 150.0
41 TraesCS7B01G139100 chr7A 100.000 30 0 0 6771 6800 236328771 236328800 1.000000e-03 56.5
42 TraesCS7B01G139100 chr7D 96.170 2115 60 9 3577 5678 221296992 221299098 0.000000e+00 3437.0
43 TraesCS7B01G139100 chr7D 94.101 2119 108 12 3571 5681 221697015 221694906 0.000000e+00 3205.0
44 TraesCS7B01G139100 chr7D 94.657 1722 84 6 3601 5315 221686008 221687728 0.000000e+00 2663.0
45 TraesCS7B01G139100 chr7D 94.309 1722 88 8 3601 5315 221581570 221583288 0.000000e+00 2628.0
46 TraesCS7B01G139100 chr7D 93.373 1328 69 9 5690 7008 221688249 221689566 0.000000e+00 1947.0
47 TraesCS7B01G139100 chr7D 93.298 1328 70 9 5690 7008 221583810 221585127 0.000000e+00 1941.0
48 TraesCS7B01G139100 chr7D 92.708 1344 78 11 5675 7008 221299126 221300459 0.000000e+00 1921.0
49 TraesCS7B01G139100 chr7D 91.691 1396 75 15 494 1876 221579852 221581219 0.000000e+00 1897.0
50 TraesCS7B01G139100 chr7D 91.332 1396 80 15 494 1876 221684295 221685662 0.000000e+00 1869.0
51 TraesCS7B01G139100 chr7D 89.488 1113 66 22 494 1595 221295498 221296570 0.000000e+00 1360.0
52 TraesCS7B01G139100 chr7D 87.640 890 61 28 722 1585 221698302 221697436 0.000000e+00 989.0
53 TraesCS7B01G139100 chr7D 94.081 642 31 4 5675 6312 221694881 221694243 0.000000e+00 968.0
54 TraesCS7B01G139100 chr7D 97.315 298 8 0 1959 2256 221581218 221581515 2.260000e-139 507.0
55 TraesCS7B01G139100 chr7D 96.644 298 6 2 1959 2256 221296700 221296993 6.320000e-135 492.0
56 TraesCS7B01G139100 chr7D 96.309 298 11 0 1959 2256 221685661 221685958 2.270000e-134 490.0
57 TraesCS7B01G139100 chr7D 94.136 324 12 4 5356 5678 221687728 221688045 2.940000e-133 486.0
58 TraesCS7B01G139100 chr7D 95.302 298 12 2 1959 2256 221697301 221697006 8.240000e-129 472.0
59 TraesCS7B01G139100 chr7D 92.923 325 15 5 5356 5678 221583288 221583606 3.830000e-127 466.0
60 TraesCS7B01G139100 chr7D 92.089 316 24 1 6364 6679 221694243 221693929 1.800000e-120 444.0
61 TraesCS7B01G139100 chr7D 94.306 281 16 0 73 353 221682944 221683224 1.400000e-116 431.0
62 TraesCS7B01G139100 chr7D 93.525 278 15 1 73 350 221291940 221292214 1.820000e-110 411.0
63 TraesCS7B01G139100 chr7D 92.527 281 20 1 73 353 221534520 221534799 1.100000e-107 401.0
64 TraesCS7B01G139100 chr7D 93.487 261 14 1 91 351 221292931 221293188 1.100000e-102 385.0
65 TraesCS7B01G139100 chr7D 95.035 141 7 0 357 497 221292257 221292397 9.160000e-54 222.0
66 TraesCS7B01G139100 chr7D 93.617 141 6 1 357 497 221683264 221683401 2.560000e-49 207.0
67 TraesCS7B01G139100 chr7D 92.647 136 5 1 1741 1876 221296571 221296701 2.580000e-44 191.0
68 TraesCS7B01G139100 chr7D 91.912 136 11 0 1741 1876 221697435 221697300 2.580000e-44 191.0
69 TraesCS7B01G139100 chr7D 95.833 96 4 0 1871 1966 540714313 540714218 9.420000e-34 156.0
70 TraesCS7B01G139100 chr7D 95.775 71 3 0 427 497 221578917 221578987 1.600000e-21 115.0
71 TraesCS7B01G139100 chr7D 89.333 75 5 1 357 431 221534840 221534911 2.700000e-14 91.6
72 TraesCS7B01G139100 chr7D 95.833 48 0 2 3571 3616 221581506 221581553 7.550000e-10 76.8
73 TraesCS7B01G139100 chr7D 95.833 48 0 2 3571 3616 221685949 221685996 7.550000e-10 76.8
74 TraesCS7B01G139100 chr7D 100.000 31 0 0 6771 6801 221584921 221584951 2.730000e-04 58.4
75 TraesCS7B01G139100 chr7D 100.000 31 0 0 6771 6801 221689360 221689390 2.730000e-04 58.4
76 TraesCS7B01G139100 chr3B 91.648 886 42 10 2718 3584 518931818 518932690 0.000000e+00 1197.0
77 TraesCS7B01G139100 chr3B 93.376 468 24 4 2256 2719 515162947 515162483 0.000000e+00 686.0
78 TraesCS7B01G139100 chr3B 92.797 472 27 7 2252 2719 518931236 518931704 0.000000e+00 676.0
79 TraesCS7B01G139100 chr3B 91.879 431 23 5 3157 3584 515161962 515161541 6.060000e-165 592.0
80 TraesCS7B01G139100 chr3B 89.614 414 21 4 2718 3121 515162369 515161968 2.260000e-139 507.0
81 TraesCS7B01G139100 chr3B 86.885 61 6 2 1 61 253226822 253226764 4.540000e-07 67.6
82 TraesCS7B01G139100 chr3B 91.667 48 4 0 1 48 685808151 685808198 4.540000e-07 67.6
83 TraesCS7B01G139100 chrUn 90.858 886 41 12 2718 3584 123972461 123973325 0.000000e+00 1151.0
84 TraesCS7B01G139100 chrUn 90.632 886 43 12 2718 3584 4343333 4344197 0.000000e+00 1140.0
85 TraesCS7B01G139100 chrUn 90.632 886 43 12 2718 3584 131821119 131820255 0.000000e+00 1140.0
86 TraesCS7B01G139100 chrUn 93.590 468 23 4 2256 2719 123971883 123972347 0.000000e+00 691.0
87 TraesCS7B01G139100 chrUn 92.949 468 26 4 2256 2719 4342755 4343219 0.000000e+00 675.0
88 TraesCS7B01G139100 chrUn 92.949 468 26 4 2256 2719 131821697 131821233 0.000000e+00 675.0
89 TraesCS7B01G139100 chr4A 98.901 91 1 0 1874 1964 716820964 716820874 5.630000e-36 163.0
90 TraesCS7B01G139100 chr2B 94.845 97 5 0 1871 1967 142245581 142245677 1.220000e-32 152.0
91 TraesCS7B01G139100 chr2B 93.137 102 4 3 1874 1973 642562167 642562067 5.670000e-31 147.0
92 TraesCS7B01G139100 chr2B 90.909 55 5 0 1 55 126403261 126403315 2.710000e-09 75.0
93 TraesCS7B01G139100 chr4D 94.000 100 5 1 1874 1973 164649455 164649553 4.380000e-32 150.0
94 TraesCS7B01G139100 chr4B 96.667 90 3 0 1874 1963 16602478 16602389 4.380000e-32 150.0
95 TraesCS7B01G139100 chr1B 94.681 94 5 0 1875 1968 465095405 465095498 5.670000e-31 147.0
96 TraesCS7B01G139100 chr6D 78.173 197 37 6 2250 2443 452573596 452573789 3.440000e-23 121.0
97 TraesCS7B01G139100 chr5D 97.778 45 1 0 1 45 77030223 77030267 2.100000e-10 78.7
98 TraesCS7B01G139100 chr5B 90.909 55 3 2 1 53 669705313 669705367 9.760000e-09 73.1
99 TraesCS7B01G139100 chr6B 85.938 64 7 2 1 63 654649846 654649784 4.540000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G139100 chr7B 175610994 175618009 7015 True 12957.000000 12957 100.000000 1 7016 1 chr7B.!!$R1 7015
1 TraesCS7B01G139100 chr7B 175718345 175723844 5499 True 2298.250000 5611 97.713000 1 7008 4 chr7B.!!$R2 7007
2 TraesCS7B01G139100 chr7B 175192757 175195072 2315 False 1122.666667 2850 92.292000 1769 5528 3 chr7B.!!$F2 3759
3 TraesCS7B01G139100 chr7B 175184585 175185360 775 False 920.000000 920 88.510000 722 1487 1 chr7B.!!$F1 765
4 TraesCS7B01G139100 chr7A 236078665 236083787 5122 False 1997.250000 3574 95.008750 495 7008 4 chr7A.!!$F2 6513
5 TraesCS7B01G139100 chr7A 236376868 236382464 5596 False 1350.666667 2154 90.577333 3838 7008 3 chr7A.!!$F6 3170
6 TraesCS7B01G139100 chr7A 236348160 236356880 8720 False 1177.142857 3035 92.091143 722 6971 7 chr7A.!!$F5 6249
7 TraesCS7B01G139100 chr7A 236321136 236328978 7842 False 969.388889 3570 95.635111 1 7008 9 chr7A.!!$F4 7007
8 TraesCS7B01G139100 chr7A 236430864 236432443 1579 False 910.000000 1504 89.018500 5436 7008 2 chr7A.!!$F7 1572
9 TraesCS7B01G139100 chr7A 236458799 236462208 3409 False 626.666667 784 89.534667 5436 7002 3 chr7A.!!$F8 1566
10 TraesCS7B01G139100 chr7A 236311805 236313859 2054 False 584.333333 1031 92.830667 1 1232 3 chr7A.!!$F3 1231
11 TraesCS7B01G139100 chr7D 221291940 221300459 8519 False 1052.375000 3437 93.713000 73 7008 8 chr7D.!!$F1 6935
12 TraesCS7B01G139100 chr7D 221693929 221698302 4373 True 1044.833333 3205 92.520833 722 6679 6 chr7D.!!$R2 5957
13 TraesCS7B01G139100 chr7D 221578917 221585127 6210 False 961.150000 2628 95.143000 427 7008 8 chr7D.!!$F3 6581
14 TraesCS7B01G139100 chr7D 221682944 221689566 6622 False 914.244444 2663 94.840333 73 7008 9 chr7D.!!$F4 6935
15 TraesCS7B01G139100 chr3B 518931236 518932690 1454 False 936.500000 1197 92.222500 2252 3584 2 chr3B.!!$F2 1332
16 TraesCS7B01G139100 chr3B 515161541 515162947 1406 True 595.000000 686 91.623000 2256 3584 3 chr3B.!!$R2 1328
17 TraesCS7B01G139100 chrUn 123971883 123973325 1442 False 921.000000 1151 92.224000 2256 3584 2 chrUn.!!$F2 1328
18 TraesCS7B01G139100 chrUn 4342755 4344197 1442 False 907.500000 1140 91.790500 2256 3584 2 chrUn.!!$F1 1328
19 TraesCS7B01G139100 chrUn 131820255 131821697 1442 True 907.500000 1140 91.790500 2256 3584 2 chrUn.!!$R1 1328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 3955 1.292061 TTTGCTTGCGTACGTCACTT 58.708 45.000 17.90 0.0 0.00 3.16 F
2449 5768 0.099968 CAGTTCTGGGCGCATTCATG 59.900 55.000 10.83 0.0 0.00 3.07 F
2465 5784 0.529337 CATGGCGAGCTGGTGTCTAG 60.529 60.000 0.00 0.0 0.00 2.43 F
3348 6805 0.463116 AAACGACGGCTCAGGTTTGT 60.463 50.000 0.00 0.0 31.88 2.83 F
3414 6871 0.535335 GCATCCGTCCCTACTGTGAA 59.465 55.000 0.00 0.0 0.00 3.18 F
3539 6996 1.073177 CTACGGACGCCAACGATTTT 58.927 50.000 0.00 0.0 43.93 1.82 F
3737 7228 2.111878 CAGCCCGGCTAATCCTGG 59.888 66.667 12.83 0.0 41.74 4.45 F
5648 9171 2.739379 GCTAGCGATTTAGGGATCTTGC 59.261 50.000 0.00 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2628 5951 0.537371 AGGCGGTTTGGGTCTTTGAG 60.537 55.000 0.00 0.00 0.00 3.02 R
3294 6748 0.389817 TGCTTTGACGCGAGCTATGT 60.390 50.000 15.93 0.00 39.60 2.29 R
3488 6945 0.518355 CGTAACAATTCGTGCTGGCG 60.518 55.000 0.00 0.00 0.00 5.69 R
4947 8447 2.203266 GGGCAGCATAGTCTGGGC 60.203 66.667 0.00 0.00 34.74 5.36 R
5359 8868 3.411446 TCCAATTTGCGACATCTCAACT 58.589 40.909 0.00 0.00 0.00 3.16 R
5403 8912 8.538701 TGTGCCATCCAATTTACAGAAATTAAT 58.461 29.630 0.00 0.00 42.22 1.40 R
5730 9445 3.786818 GCAAGCTAATCACATCAAGACGC 60.787 47.826 0.00 0.00 0.00 5.19 R
6671 14181 0.322648 AGGCCCAGCTGAAATTTTGC 59.677 50.000 17.39 5.69 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 209 3.766591 TGAATTGGTTGGTTGTGTGAACT 59.233 39.130 0.00 0.00 0.00 3.01
224 225 5.753744 TGTGAACTTTCGCAATCGTTATTT 58.246 33.333 2.71 0.00 43.95 1.40
450 488 4.062293 CAACTCGAGTAACCAAACCATGA 58.938 43.478 20.39 0.00 0.00 3.07
707 3955 1.292061 TTTGCTTGCGTACGTCACTT 58.708 45.000 17.90 0.00 0.00 3.16
1331 4605 1.669211 GCTCTTCCGTGCGTCTAAACT 60.669 52.381 0.00 0.00 0.00 2.66
1350 4624 3.854669 CCCGCGGAGAAGGCTGAT 61.855 66.667 30.73 0.00 0.00 2.90
1793 5080 9.678941 CATTCGATTTACTATTGCTACACTAGA 57.321 33.333 0.00 0.00 0.00 2.43
1882 5169 4.944317 GCTCAAGCTGTTAAATACTCCCTT 59.056 41.667 0.00 0.00 38.21 3.95
1886 5173 5.161943 AGCTGTTAAATACTCCCTTCGTT 57.838 39.130 0.00 0.00 0.00 3.85
1888 5175 4.331992 GCTGTTAAATACTCCCTTCGTTCC 59.668 45.833 0.00 0.00 0.00 3.62
1889 5176 5.484715 CTGTTAAATACTCCCTTCGTTCCA 58.515 41.667 0.00 0.00 0.00 3.53
1895 5182 7.625828 AAATACTCCCTTCGTTCCAAAATAG 57.374 36.000 0.00 0.00 0.00 1.73
1896 5183 4.903045 ACTCCCTTCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
1899 5186 5.045869 ACTCCCTTCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
1901 5188 5.045869 TCCCTTCGTTCCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
1902 5189 5.294552 CCCTTCGTTCCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
1903 5190 5.874810 CCTTCGTTCCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
1905 5192 6.721571 TCGTTCCAAAATAGATGACTCAAC 57.278 37.500 0.00 0.00 0.00 3.18
1906 5193 6.464222 TCGTTCCAAAATAGATGACTCAACT 58.536 36.000 0.00 0.00 0.00 3.16
1907 5194 6.934645 TCGTTCCAAAATAGATGACTCAACTT 59.065 34.615 0.00 0.00 0.00 2.66
1910 5197 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1912 5199 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1913 5200 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
1937 5224 9.582648 ACTAACTTTAGTACAAAATTGGGTCAT 57.417 29.630 0.00 0.00 41.92 3.06
1941 5228 9.975218 ACTTTAGTACAAAATTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
2079 5397 5.815233 TCTTTGAATCTAGCCTAGGGATG 57.185 43.478 11.72 0.00 0.00 3.51
2254 5573 9.649167 TTTACTATAAGTAGCCTTTGTCTTCAC 57.351 33.333 0.00 0.00 31.47 3.18
2313 5632 1.112113 AATCATACCCGTCTGCTCGT 58.888 50.000 0.00 0.00 0.00 4.18
2341 5660 0.450184 GCGTGCCATCGGTTGTATTT 59.550 50.000 0.00 0.00 0.00 1.40
2351 5670 6.238648 GCCATCGGTTGTATTTTTAGCTGTAT 60.239 38.462 0.00 0.00 0.00 2.29
2386 5705 3.418047 CCTTTAAACAATGGACGGACCT 58.582 45.455 0.00 0.00 39.86 3.85
2387 5706 4.581868 CCTTTAAACAATGGACGGACCTA 58.418 43.478 0.00 0.00 39.86 3.08
2435 5754 2.551270 CTGCACGCGGAACAGTTC 59.449 61.111 12.47 4.52 0.00 3.01
2449 5768 0.099968 CAGTTCTGGGCGCATTCATG 59.900 55.000 10.83 0.00 0.00 3.07
2465 5784 0.529337 CATGGCGAGCTGGTGTCTAG 60.529 60.000 0.00 0.00 0.00 2.43
2472 5795 3.589988 CGAGCTGGTGTCTAGACAAATT 58.410 45.455 26.74 11.11 43.77 1.82
2498 5821 4.414337 AGAATAGTGTCAGCATCCCTTC 57.586 45.455 0.00 0.00 0.00 3.46
2509 5832 1.037493 CATCCCTTCACATGCATGGG 58.963 55.000 29.41 26.66 39.22 4.00
2510 5833 2.396713 TCCCTTCACATGCATGGGA 58.603 52.632 27.72 27.72 43.93 4.37
2547 5870 9.683069 CAGACACTCAGCAGTTTTATTATTTTT 57.317 29.630 0.00 0.00 0.00 1.94
2584 5907 7.682981 GCCCTTCTTCATCATTAATCAAAGTCC 60.683 40.741 0.00 0.00 0.00 3.85
2611 5934 5.393461 GCTGTTTATGCTAATTGCTTCACCT 60.393 40.000 0.00 0.00 43.37 4.00
2628 5951 2.359531 CACCTCGAGAAGTGGTATCCTC 59.640 54.545 15.71 0.00 44.25 3.71
2679 6002 3.091545 TCCCCTGATGACTTGAAATTGC 58.908 45.455 0.00 0.00 0.00 3.56
2754 6192 3.304659 GCAACTCCAAAAGCGATCTTTGA 60.305 43.478 7.33 0.00 41.40 2.69
2920 6360 0.745845 CTATGCCTGCAGACGCCTTT 60.746 55.000 17.39 1.64 37.32 3.11
2958 6398 4.814041 GCCTCCTCCTCCCCAGCT 62.814 72.222 0.00 0.00 0.00 4.24
3008 6456 0.800683 TCCACGACGTGCGATTCATC 60.801 55.000 22.46 0.00 44.57 2.92
3033 6481 1.908793 ACCTGAGACACCACCCTCG 60.909 63.158 0.00 0.00 32.30 4.63
3049 6497 4.778415 CGTCGCCTCCAGTCACCG 62.778 72.222 0.00 0.00 0.00 4.94
3075 6523 5.393243 GGTGTCTAGACAACGAGCTTATTCT 60.393 44.000 26.74 0.00 43.77 2.40
3076 6524 6.183360 GGTGTCTAGACAACGAGCTTATTCTA 60.183 42.308 26.74 0.00 43.77 2.10
3090 6538 6.700352 AGCTTATTCTAGAGAAGCATGATCC 58.300 40.000 29.05 10.12 46.46 3.36
3092 6540 6.813152 GCTTATTCTAGAGAAGCATGATCCTC 59.187 42.308 25.44 0.00 44.05 3.71
3129 6577 2.501723 CTGCTTAAAGCTCCTACTCCCA 59.498 50.000 0.00 0.00 42.97 4.37
3141 6589 3.028850 CCTACTCCCAGAAACCGTATCA 58.971 50.000 0.00 0.00 0.00 2.15
3211 6665 2.115910 CCTTCACAGCCCAGCCAA 59.884 61.111 0.00 0.00 0.00 4.52
3216 6670 2.914097 ACAGCCCAGCCAACTTGC 60.914 61.111 0.00 0.00 0.00 4.01
3220 6674 2.281761 CCCAGCCAACTTGCTCGT 60.282 61.111 0.00 0.00 40.32 4.18
3233 6687 4.350620 CTCGTGCAGAGCAGTTGT 57.649 55.556 0.00 0.00 40.08 3.32
3234 6688 1.858041 CTCGTGCAGAGCAGTTGTG 59.142 57.895 0.00 0.00 40.08 3.33
3294 6748 1.342074 CTGAAGCCATCCGGGATCTA 58.658 55.000 6.55 0.00 40.01 1.98
3337 6794 2.468532 CGCGAAGGAAAACGACGG 59.531 61.111 0.00 0.00 0.00 4.79
3347 6804 0.661020 AAAACGACGGCTCAGGTTTG 59.339 50.000 0.00 0.00 33.28 2.93
3348 6805 0.463116 AAACGACGGCTCAGGTTTGT 60.463 50.000 0.00 0.00 31.88 2.83
3411 6868 1.379443 TCGCATCCGTCCCTACTGT 60.379 57.895 0.00 0.00 35.54 3.55
3412 6869 1.226974 CGCATCCGTCCCTACTGTG 60.227 63.158 0.00 0.00 0.00 3.66
3413 6870 1.663379 CGCATCCGTCCCTACTGTGA 61.663 60.000 0.00 0.00 0.00 3.58
3414 6871 0.535335 GCATCCGTCCCTACTGTGAA 59.465 55.000 0.00 0.00 0.00 3.18
3415 6872 1.739371 GCATCCGTCCCTACTGTGAAC 60.739 57.143 0.00 0.00 0.00 3.18
3481 6938 1.131504 TCATTATTTGCCCGCAACGTC 59.868 47.619 0.61 0.00 35.46 4.34
3488 6945 3.041940 CCCGCAACGTCCTGACAC 61.042 66.667 0.00 0.00 0.00 3.67
3527 6984 2.573609 ATCCCAACGCAGCTACGGAC 62.574 60.000 11.74 0.00 37.37 4.79
3539 6996 1.073177 CTACGGACGCCAACGATTTT 58.927 50.000 0.00 0.00 43.93 1.82
3737 7228 2.111878 CAGCCCGGCTAATCCTGG 59.888 66.667 12.83 0.00 41.74 4.45
3795 7286 5.822132 AGAGCCAAGATATGTTAGCTGAT 57.178 39.130 10.18 0.00 0.00 2.90
3882 7373 3.838565 TGTTCCTTACAAGAATGCCCAA 58.161 40.909 0.00 0.00 32.64 4.12
4096 7587 7.738437 TGCCATGATCCAACTGATATATCTA 57.262 36.000 13.79 0.28 32.41 1.98
4651 8145 5.126067 GCAGTTTTCCCTTCATCTAGCATA 58.874 41.667 0.00 0.00 0.00 3.14
4802 8298 7.546250 TTGTTGGGGCTTATTTTCAGAAATA 57.454 32.000 0.00 0.00 36.82 1.40
4808 8304 5.691754 GGGCTTATTTTCAGAAATATTGCCG 59.308 40.000 18.80 0.00 45.84 5.69
4911 8411 9.732130 AATCTGCCTAGATGTTTATCTTATTCC 57.268 33.333 0.00 0.00 42.80 3.01
5161 8662 3.872511 TGGCCACTATTGCTTCAAATG 57.127 42.857 0.00 0.00 0.00 2.32
5372 8881 5.291858 TGATCATAACAAGTTGAGATGTCGC 59.708 40.000 10.54 6.97 0.00 5.19
5648 9171 2.739379 GCTAGCGATTTAGGGATCTTGC 59.261 50.000 0.00 0.00 0.00 4.01
5730 9445 3.353836 CCCTTGCACAACGGACGG 61.354 66.667 0.00 0.00 0.00 4.79
5835 9553 7.037438 GCAACCATCTGATAATTTGACACATT 58.963 34.615 8.47 0.00 0.00 2.71
6096 9853 8.183536 TGAAATGTGCTAGTTTGCTGTATTATG 58.816 33.333 0.00 0.00 0.00 1.90
6149 9906 1.276989 CTCCCCTTGTGCCGTACTTTA 59.723 52.381 0.00 0.00 0.00 1.85
6234 11446 4.911610 CAGAAAGTTATTGAAACTGCCACG 59.088 41.667 0.00 0.00 0.00 4.94
6270 13314 2.545526 CTCTGTTCGTGTGCTGTGAATT 59.454 45.455 0.00 0.00 0.00 2.17
6689 14199 0.674581 GGCAAAATTTCAGCTGGGCC 60.675 55.000 15.13 11.61 0.00 5.80
6690 14200 0.322648 GCAAAATTTCAGCTGGGCCT 59.677 50.000 15.13 0.00 0.00 5.19
6691 14201 1.942586 GCAAAATTTCAGCTGGGCCTG 60.943 52.381 15.13 5.32 0.00 4.85
6692 14202 0.978907 AAAATTTCAGCTGGGCCTGG 59.021 50.000 15.13 2.60 33.64 4.45
6693 14203 0.178924 AAATTTCAGCTGGGCCTGGT 60.179 50.000 15.13 9.52 33.64 4.00
6694 14204 0.178924 AATTTCAGCTGGGCCTGGTT 60.179 50.000 15.13 0.00 33.64 3.67
6695 14205 0.704076 ATTTCAGCTGGGCCTGGTTA 59.296 50.000 15.13 2.05 33.64 2.85
6696 14206 0.480690 TTTCAGCTGGGCCTGGTTAA 59.519 50.000 15.13 8.71 33.64 2.01
6697 14207 0.038166 TTCAGCTGGGCCTGGTTAAG 59.962 55.000 15.13 2.32 33.64 1.85
6711 14226 2.311542 TGGTTAAGGGCCTGACATGATT 59.688 45.455 6.92 0.00 0.00 2.57
6768 14283 3.788227 TGGATGGCAAGTCTTACAAGT 57.212 42.857 0.00 0.00 0.00 3.16
6769 14284 3.674997 TGGATGGCAAGTCTTACAAGTC 58.325 45.455 0.00 0.00 0.00 3.01
6801 14344 8.838649 AGCCCTTGTACCAATTATTTCTAATT 57.161 30.769 0.00 0.00 37.92 1.40
6802 14345 9.267071 AGCCCTTGTACCAATTATTTCTAATTT 57.733 29.630 0.00 0.00 35.77 1.82
6803 14346 9.529325 GCCCTTGTACCAATTATTTCTAATTTC 57.471 33.333 0.00 0.00 35.77 2.17
6928 14473 2.171870 CGGGAGCATTCTAGGGGTTTAA 59.828 50.000 0.00 0.00 0.00 1.52
7008 15126 5.705609 AAATTTGCTTTCTCTTCGCCTTA 57.294 34.783 0.00 0.00 0.00 2.69
7009 15127 5.705609 AATTTGCTTTCTCTTCGCCTTAA 57.294 34.783 0.00 0.00 0.00 1.85
7010 15128 5.705609 ATTTGCTTTCTCTTCGCCTTAAA 57.294 34.783 0.00 0.00 0.00 1.52
7012 15130 5.508200 TTGCTTTCTCTTCGCCTTAAAAA 57.492 34.783 0.00 0.00 0.00 1.94
7013 15131 4.855531 TGCTTTCTCTTCGCCTTAAAAAC 58.144 39.130 0.00 0.00 0.00 2.43
7014 15132 3.906601 GCTTTCTCTTCGCCTTAAAAACG 59.093 43.478 0.00 0.00 0.00 3.60
7015 15133 4.319261 GCTTTCTCTTCGCCTTAAAAACGA 60.319 41.667 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
178 179 3.603965 ACCAACCAATTCACTACCCAA 57.396 42.857 0.00 0.00 0.00 4.12
208 209 7.184106 GGATCAAGTAAATAACGATTGCGAAA 58.816 34.615 0.00 0.00 41.64 3.46
220 221 5.132144 GGTCAGGGAAGGGATCAAGTAAATA 59.868 44.000 0.00 0.00 0.00 1.40
224 225 2.225779 TGGTCAGGGAAGGGATCAAGTA 60.226 50.000 0.00 0.00 0.00 2.24
450 488 3.815401 CTCAACCACGATTTTGTCTCCTT 59.185 43.478 0.00 0.00 0.00 3.36
904 4153 4.525912 ATGTGGTTTCTGCTTTCAATCC 57.474 40.909 0.00 0.00 0.00 3.01
1315 4589 0.947180 GGCAGTTTAGACGCACGGAA 60.947 55.000 0.00 0.00 0.00 4.30
1350 4624 3.000819 ATTGGCTCGTCGGGGTCA 61.001 61.111 0.00 0.00 0.00 4.02
1532 4814 8.961294 TCTACTACGTGTAAAATCTCTGAAAC 57.039 34.615 0.00 0.00 0.00 2.78
1793 5080 5.449107 GCCATCAGCATTAGAAACATGAT 57.551 39.130 0.00 0.00 42.97 2.45
1882 5169 6.464222 AGTTGAGTCATCTATTTTGGAACGA 58.536 36.000 1.70 0.00 0.00 3.85
1886 5173 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
1913 5200 9.802039 AGATGACCCAATTTTGTACTAAAGTTA 57.198 29.630 8.41 0.00 0.00 2.24
1924 5211 9.289303 CGTTCTAAAATAGATGACCCAATTTTG 57.711 33.333 0.00 0.00 34.37 2.44
1926 5213 7.832187 TCCGTTCTAAAATAGATGACCCAATTT 59.168 33.333 0.00 0.00 34.22 1.82
1927 5214 7.343357 TCCGTTCTAAAATAGATGACCCAATT 58.657 34.615 0.00 0.00 34.22 2.32
1928 5215 6.895782 TCCGTTCTAAAATAGATGACCCAAT 58.104 36.000 0.00 0.00 34.22 3.16
1929 5216 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
1930 5217 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
1931 5218 5.298347 CCTCCGTTCTAAAATAGATGACCC 58.702 45.833 0.00 0.00 34.22 4.46
1932 5219 5.070047 TCCCTCCGTTCTAAAATAGATGACC 59.930 44.000 0.00 0.00 34.22 4.02
1933 5220 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
1935 5222 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
1941 5228 9.991906 CAAATATATACTCCCTCCGTTCTAAAA 57.008 33.333 0.00 0.00 0.00 1.52
1942 5229 8.092687 GCAAATATATACTCCCTCCGTTCTAAA 58.907 37.037 0.00 0.00 0.00 1.85
1944 5231 6.127814 CGCAAATATATACTCCCTCCGTTCTA 60.128 42.308 0.00 0.00 0.00 2.10
1945 5232 5.336531 CGCAAATATATACTCCCTCCGTTCT 60.337 44.000 0.00 0.00 0.00 3.01
1946 5233 4.863131 CGCAAATATATACTCCCTCCGTTC 59.137 45.833 0.00 0.00 0.00 3.95
1947 5234 4.525487 TCGCAAATATATACTCCCTCCGTT 59.475 41.667 0.00 0.00 0.00 4.44
2079 5397 6.510536 ACTAGGGCTTACGTAATGTTATGAC 58.489 40.000 8.76 0.00 0.00 3.06
2254 5573 4.620609 CTGAGCTCAGAATCGAATATTCGG 59.379 45.833 35.69 18.32 46.94 4.30
2282 5601 2.225467 GGTATGATTTCAGGAGCAGCC 58.775 52.381 0.00 0.00 0.00 4.85
2313 5632 0.807275 CGATGGCACGCATCTTCAGA 60.807 55.000 0.00 0.00 0.00 3.27
2351 5670 4.278669 TGTTTAAAGGCAATACCGCTGAAA 59.721 37.500 0.00 0.00 46.52 2.69
2433 5752 2.417257 GCCATGAATGCGCCCAGAA 61.417 57.895 4.18 0.00 0.00 3.02
2435 5754 4.260355 CGCCATGAATGCGCCCAG 62.260 66.667 4.18 0.00 46.01 4.45
2449 5768 1.139947 GTCTAGACACCAGCTCGCC 59.860 63.158 18.20 0.00 0.00 5.54
2465 5784 9.677567 TGCTGACACTATTCTTTTTAATTTGTC 57.322 29.630 0.00 0.00 34.41 3.18
2472 5795 6.721318 AGGGATGCTGACACTATTCTTTTTA 58.279 36.000 0.00 0.00 0.00 1.52
2547 5870 3.439154 TGAAGAAGGGCATTGGCATTTA 58.561 40.909 11.54 0.00 43.71 1.40
2559 5882 7.467811 CGGACTTTGATTAATGATGAAGAAGGG 60.468 40.741 0.00 0.00 0.00 3.95
2611 5934 3.646736 TGAGAGGATACCACTTCTCGA 57.353 47.619 0.00 0.00 43.03 4.04
2628 5951 0.537371 AGGCGGTTTGGGTCTTTGAG 60.537 55.000 0.00 0.00 0.00 3.02
2658 5981 3.091545 GCAATTTCAAGTCATCAGGGGA 58.908 45.455 0.00 0.00 0.00 4.81
2754 6192 1.267806 CCAGCTCGTGTTCAGCAAATT 59.732 47.619 0.00 0.00 39.56 1.82
2819 6259 6.597262 TGCGATGTTGTAGTTGTATAATGG 57.403 37.500 0.00 0.00 0.00 3.16
2941 6381 4.814041 AGCTGGGGAGGAGGAGGC 62.814 72.222 0.00 0.00 0.00 4.70
2958 6398 1.952133 CGTGGCCGAAGTTGACGAA 60.952 57.895 3.59 0.00 35.63 3.85
2987 6435 1.075979 TGAATCGCACGTCGTGGATG 61.076 55.000 25.70 1.69 39.67 3.51
3049 6497 1.071567 GCTCGTTGTCTAGACACCGC 61.072 60.000 31.07 22.37 45.03 5.68
3050 6498 0.522180 AGCTCGTTGTCTAGACACCG 59.478 55.000 30.33 30.33 46.44 4.94
3051 6499 2.726832 AAGCTCGTTGTCTAGACACC 57.273 50.000 25.13 17.55 41.67 4.16
3052 6500 5.642686 AGAATAAGCTCGTTGTCTAGACAC 58.357 41.667 25.13 17.76 41.67 3.67
3075 6523 3.491619 GCAACGAGGATCATGCTTCTCTA 60.492 47.826 3.43 0.00 42.36 2.43
3076 6524 2.741228 GCAACGAGGATCATGCTTCTCT 60.741 50.000 3.43 0.00 42.36 3.10
3107 6555 2.766828 GGGAGTAGGAGCTTTAAGCAGA 59.233 50.000 19.63 0.00 45.56 4.26
3159 6607 1.669115 CACAGGAGGTTGCTCGTGG 60.669 63.158 0.00 0.00 41.78 4.94
3164 6612 2.883828 CGGTCCACAGGAGGTTGCT 61.884 63.158 0.00 0.00 29.39 3.91
3216 6670 1.858041 CACAACTGCTCTGCACGAG 59.142 57.895 8.34 8.34 42.88 4.18
3294 6748 0.389817 TGCTTTGACGCGAGCTATGT 60.390 50.000 15.93 0.00 39.60 2.29
3319 6776 2.468532 CGTCGTTTTCCTTCGCGG 59.531 61.111 6.13 0.00 0.00 6.46
3323 6780 0.790814 CTGAGCCGTCGTTTTCCTTC 59.209 55.000 0.00 0.00 0.00 3.46
3337 6794 1.128692 GATGTACGCACAAACCTGAGC 59.871 52.381 0.00 0.00 38.42 4.26
3347 6804 0.739813 GTGGACCAGGATGTACGCAC 60.740 60.000 0.00 0.00 29.71 5.34
3348 6805 1.594833 GTGGACCAGGATGTACGCA 59.405 57.895 0.00 0.00 29.71 5.24
3411 6868 3.948719 GACCGGTGGGCCAGTTCA 61.949 66.667 14.63 0.00 36.48 3.18
3481 6938 4.662961 TCGTGCTGGCGTGTCAGG 62.663 66.667 3.35 0.00 35.43 3.86
3488 6945 0.518355 CGTAACAATTCGTGCTGGCG 60.518 55.000 0.00 0.00 0.00 5.69
3527 6984 1.396996 CTAGTCCCAAAATCGTTGGCG 59.603 52.381 0.00 0.00 38.23 5.69
3532 6989 2.678190 GCTCAGCTAGTCCCAAAATCGT 60.678 50.000 0.00 0.00 0.00 3.73
3539 6996 0.749818 CTCGAGCTCAGCTAGTCCCA 60.750 60.000 15.40 0.00 39.88 4.37
3571 7028 3.486383 TGAACATGAAAAGAGGGGACAC 58.514 45.455 0.00 0.00 0.00 3.67
3572 7029 3.874383 TGAACATGAAAAGAGGGGACA 57.126 42.857 0.00 0.00 0.00 4.02
3737 7228 1.225704 CTCTCATCAGGGTTGGGCC 59.774 63.158 0.00 0.00 0.00 5.80
3882 7373 3.747708 GCACAGGTAAGGTGTTTTCTCCT 60.748 47.826 0.00 0.00 44.54 3.69
4096 7587 2.253610 CCATGCCATGCCATTATCCTT 58.746 47.619 0.00 0.00 0.00 3.36
4651 8145 4.464008 ACCATTCAGATGCGGTTATCAAT 58.536 39.130 0.00 0.00 31.67 2.57
4802 8298 4.614993 CGTTCAATTGTAAGAACCGGCAAT 60.615 41.667 0.00 0.00 40.69 3.56
4808 8304 5.427036 TCCAACGTTCAATTGTAAGAACC 57.573 39.130 5.13 0.00 40.69 3.62
4947 8447 2.203266 GGGCAGCATAGTCTGGGC 60.203 66.667 0.00 0.00 34.74 5.36
5161 8662 7.696453 CCGAAAACCATTTTATCACTGACATAC 59.304 37.037 0.00 0.00 31.94 2.39
5359 8868 3.411446 TCCAATTTGCGACATCTCAACT 58.589 40.909 0.00 0.00 0.00 3.16
5400 8909 9.696917 GCCATCCAATTTACAGAAATTAATAGG 57.303 33.333 0.00 0.00 42.22 2.57
5403 8912 8.538701 TGTGCCATCCAATTTACAGAAATTAAT 58.461 29.630 0.00 0.00 42.22 1.40
5648 9171 5.545658 TTCTAAATTTCTAACCGCTGCTG 57.454 39.130 0.00 0.00 0.00 4.41
5730 9445 3.786818 GCAAGCTAATCACATCAAGACGC 60.787 47.826 0.00 0.00 0.00 5.19
5835 9553 9.081204 AGCATGCCATCAGATAAATAACAAATA 57.919 29.630 15.66 0.00 0.00 1.40
6096 9853 8.999220 AGCTAAGGTAGAACATTAACAGTAAC 57.001 34.615 0.00 0.00 0.00 2.50
6234 11446 4.318831 CGAACAGAGTGAGGTAAAAGCAAC 60.319 45.833 0.00 0.00 0.00 4.17
6671 14181 0.322648 AGGCCCAGCTGAAATTTTGC 59.677 50.000 17.39 5.69 0.00 3.68
6689 14199 1.281867 TCATGTCAGGCCCTTAACCAG 59.718 52.381 0.00 0.00 0.00 4.00
6690 14200 1.367346 TCATGTCAGGCCCTTAACCA 58.633 50.000 0.00 0.00 0.00 3.67
6691 14201 2.736670 ATCATGTCAGGCCCTTAACC 57.263 50.000 0.00 0.00 0.00 2.85
6692 14202 6.096846 ACATTTAATCATGTCAGGCCCTTAAC 59.903 38.462 0.00 0.00 31.26 2.01
6693 14203 6.194235 ACATTTAATCATGTCAGGCCCTTAA 58.806 36.000 0.00 0.00 31.26 1.85
6694 14204 5.765510 ACATTTAATCATGTCAGGCCCTTA 58.234 37.500 0.00 0.00 31.26 2.69
6695 14205 4.613437 ACATTTAATCATGTCAGGCCCTT 58.387 39.130 0.00 0.00 31.26 3.95
6696 14206 4.255510 ACATTTAATCATGTCAGGCCCT 57.744 40.909 0.00 0.00 31.26 5.19
6711 14226 2.299013 AGAGGTCGCTGTGTGACATTTA 59.701 45.455 12.36 0.00 43.87 1.40
6811 14354 8.601546 TCAGCCATTAGAAATAATTGGGTTTTT 58.398 29.630 0.00 0.00 0.00 1.94
6812 14355 8.144862 TCAGCCATTAGAAATAATTGGGTTTT 57.855 30.769 0.00 0.00 0.00 2.43
6813 14356 7.732222 TCAGCCATTAGAAATAATTGGGTTT 57.268 32.000 0.00 0.00 0.00 3.27
6814 14357 7.400052 ACTTCAGCCATTAGAAATAATTGGGTT 59.600 33.333 0.00 0.00 0.00 4.11
6815 14358 6.897413 ACTTCAGCCATTAGAAATAATTGGGT 59.103 34.615 0.00 0.00 0.00 4.51
6816 14359 7.352079 ACTTCAGCCATTAGAAATAATTGGG 57.648 36.000 0.00 0.00 0.00 4.12
6817 14360 8.689972 AGAACTTCAGCCATTAGAAATAATTGG 58.310 33.333 0.00 0.00 0.00 3.16
6818 14361 9.727627 GAGAACTTCAGCCATTAGAAATAATTG 57.272 33.333 0.00 0.00 0.00 2.32
6819 14362 8.907885 GGAGAACTTCAGCCATTAGAAATAATT 58.092 33.333 0.00 0.00 0.00 1.40
6820 14363 8.055181 TGGAGAACTTCAGCCATTAGAAATAAT 58.945 33.333 0.54 0.00 0.00 1.28
6821 14364 7.402054 TGGAGAACTTCAGCCATTAGAAATAA 58.598 34.615 0.54 0.00 0.00 1.40
6822 14365 6.957631 TGGAGAACTTCAGCCATTAGAAATA 58.042 36.000 0.54 0.00 0.00 1.40
6823 14366 5.819991 TGGAGAACTTCAGCCATTAGAAAT 58.180 37.500 0.54 0.00 0.00 2.17
6824 14367 5.241403 TGGAGAACTTCAGCCATTAGAAA 57.759 39.130 0.54 0.00 0.00 2.52
6825 14368 4.908601 TGGAGAACTTCAGCCATTAGAA 57.091 40.909 0.54 0.00 0.00 2.10
6826 14369 4.908601 TTGGAGAACTTCAGCCATTAGA 57.091 40.909 4.71 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.