Multiple sequence alignment - TraesCS7B01G138000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G138000 chr7B 100.000 2941 0 0 1 2941 173304659 173301719 0.000000e+00 5432.0
1 TraesCS7B01G138000 chr7B 95.739 1455 57 4 977 2430 552550955 552552405 0.000000e+00 2338.0
2 TraesCS7B01G138000 chr7B 93.820 987 50 4 1 981 64969949 64970930 0.000000e+00 1474.0
3 TraesCS7B01G138000 chr7B 96.250 160 6 0 2782 2941 566425942 566425783 2.250000e-66 263.0
4 TraesCS7B01G138000 chr3D 97.534 1460 34 2 977 2435 363069281 363070739 0.000000e+00 2495.0
5 TraesCS7B01G138000 chr3D 96.031 1033 41 0 983 2015 375236246 375235214 0.000000e+00 1681.0
6 TraesCS7B01G138000 chr3D 96.029 982 28 4 1 976 363066653 363067629 0.000000e+00 1587.0
7 TraesCS7B01G138000 chr3D 84.921 1008 99 25 1 976 375238880 375237894 0.000000e+00 970.0
8 TraesCS7B01G138000 chr3D 90.000 420 39 2 2017 2433 375225617 375225198 9.270000e-150 540.0
9 TraesCS7B01G138000 chr3D 94.302 351 17 2 2432 2781 125790443 125790095 4.310000e-148 534.0
10 TraesCS7B01G138000 chr3D 98.370 184 2 1 2253 2435 54627936 54627753 3.660000e-84 322.0
11 TraesCS7B01G138000 chr3D 96.203 158 6 0 2782 2939 287078161 287078004 2.910000e-65 259.0
12 TraesCS7B01G138000 chr3D 88.095 84 9 1 77 159 570542408 570542491 6.710000e-17 99.0
13 TraesCS7B01G138000 chr5B 93.544 1456 89 4 983 2435 485817070 485815617 0.000000e+00 2163.0
14 TraesCS7B01G138000 chr3A 93.531 1453 90 3 983 2432 701761213 701759762 0.000000e+00 2159.0
15 TraesCS7B01G138000 chr1A 95.931 1327 52 2 983 2308 98290847 98289522 0.000000e+00 2150.0
16 TraesCS7B01G138000 chr1A 94.157 907 45 3 1 904 98293695 98292794 0.000000e+00 1375.0
17 TraesCS7B01G138000 chr1A 92.877 351 21 3 2432 2781 509239191 509238844 9.410000e-140 507.0
18 TraesCS7B01G138000 chr1A 100.000 44 0 0 933 976 98292793 98292750 6.760000e-12 82.4
19 TraesCS7B01G138000 chr1A 97.297 37 0 1 2395 2431 98289525 98289490 8.800000e-06 62.1
20 TraesCS7B01G138000 chr7D 93.129 1470 77 13 983 2428 184518239 184516770 0.000000e+00 2134.0
21 TraesCS7B01G138000 chr7D 84.524 1008 103 24 1 976 184520874 184519888 0.000000e+00 948.0
22 TraesCS7B01G138000 chr7D 94.571 350 17 1 2432 2781 478674325 478673978 9.270000e-150 540.0
23 TraesCS7B01G138000 chr7D 93.750 352 19 2 2432 2783 550592013 550591665 2.600000e-145 525.0
24 TraesCS7B01G138000 chr7D 90.306 196 17 1 364 557 63742115 63741920 3.760000e-64 255.0
25 TraesCS7B01G138000 chr4D 92.886 1476 81 13 977 2428 85732766 85734241 0.000000e+00 2122.0
26 TraesCS7B01G138000 chr4D 86.111 1008 97 21 1 976 85730127 85731123 0.000000e+00 1046.0
27 TraesCS7B01G138000 chr4D 96.203 158 6 0 2782 2939 465641819 465641662 2.910000e-65 259.0
28 TraesCS7B01G138000 chr6D 92.302 1481 74 16 977 2433 460764906 460766370 0.000000e+00 2067.0
29 TraesCS7B01G138000 chr6D 85.913 1008 99 21 1 976 460762270 460763266 0.000000e+00 1035.0
30 TraesCS7B01G138000 chr6D 96.203 158 6 0 2782 2939 129231074 129231231 2.910000e-65 259.0
31 TraesCS7B01G138000 chr7A 94.073 1046 60 2 1394 2438 383420476 383421520 0.000000e+00 1587.0
32 TraesCS7B01G138000 chr7A 90.964 985 74 7 1 976 626860897 626859919 0.000000e+00 1312.0
33 TraesCS7B01G138000 chr7A 90.752 984 77 6 1 976 626783246 626782269 0.000000e+00 1301.0
34 TraesCS7B01G138000 chr7A 90.622 981 78 6 4 976 626846212 626845238 0.000000e+00 1290.0
35 TraesCS7B01G138000 chr7A 92.503 907 52 9 1 904 383416003 383416896 0.000000e+00 1284.0
36 TraesCS7B01G138000 chr7A 90.152 985 78 10 1 976 626841482 626840508 0.000000e+00 1264.0
37 TraesCS7B01G138000 chr2D 94.501 982 42 5 6 981 624001111 624000136 0.000000e+00 1504.0
38 TraesCS7B01G138000 chr2D 93.212 987 50 7 1 981 393690580 393689605 0.000000e+00 1435.0
39 TraesCS7B01G138000 chr2D 95.737 563 20 2 422 981 648413459 648414020 0.000000e+00 904.0
40 TraesCS7B01G138000 chr2D 93.473 429 19 4 1 426 648413071 648413493 1.920000e-176 628.0
41 TraesCS7B01G138000 chr2D 93.143 350 22 1 2432 2781 208324184 208324531 2.020000e-141 512.0
42 TraesCS7B01G138000 chr2D 96.835 158 5 0 2782 2939 394767304 394767461 6.250000e-67 265.0
43 TraesCS7B01G138000 chr2D 95.652 161 7 0 2781 2941 480440617 480440457 2.910000e-65 259.0
44 TraesCS7B01G138000 chr5D 94.225 987 46 4 1 981 401764591 401763610 0.000000e+00 1496.0
45 TraesCS7B01G138000 chr5D 93.043 345 21 2 2439 2783 47920638 47920297 4.380000e-138 501.0
46 TraesCS7B01G138000 chr5D 98.370 184 2 1 2253 2435 401762051 401761868 3.660000e-84 322.0
47 TraesCS7B01G138000 chr1D 85.899 929 92 18 1 900 267390329 267389411 0.000000e+00 953.0
48 TraesCS7B01G138000 chr1D 96.835 158 5 0 2782 2939 282203742 282203585 6.250000e-67 265.0
49 TraesCS7B01G138000 chr6B 87.735 799 73 8 1666 2440 331339900 331340697 0.000000e+00 909.0
50 TraesCS7B01G138000 chr1B 82.983 999 95 36 1 978 645733639 645734583 0.000000e+00 833.0
51 TraesCS7B01G138000 chr1B 96.835 158 5 0 2782 2939 527674456 527674613 6.250000e-67 265.0
52 TraesCS7B01G138000 chr6A 94.017 351 19 1 2432 2782 132057497 132057149 5.580000e-147 531.0
53 TraesCS7B01G138000 chr2B 92.857 350 22 2 2432 2781 346307857 346308203 3.380000e-139 505.0
54 TraesCS7B01G138000 chr5A 92.571 350 24 1 2432 2781 183360587 183360934 4.380000e-138 501.0
55 TraesCS7B01G138000 chr3B 96.250 160 6 0 2782 2941 427995101 427995260 2.250000e-66 263.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G138000 chr7B 173301719 173304659 2940 True 5432.000 5432 100.00000 1 2941 1 chr7B.!!$R1 2940
1 TraesCS7B01G138000 chr7B 552550955 552552405 1450 False 2338.000 2338 95.73900 977 2430 1 chr7B.!!$F2 1453
2 TraesCS7B01G138000 chr7B 64969949 64970930 981 False 1474.000 1474 93.82000 1 981 1 chr7B.!!$F1 980
3 TraesCS7B01G138000 chr3D 363066653 363070739 4086 False 2041.000 2495 96.78150 1 2435 2 chr3D.!!$F2 2434
4 TraesCS7B01G138000 chr3D 375235214 375238880 3666 True 1325.500 1681 90.47600 1 2015 2 chr3D.!!$R5 2014
5 TraesCS7B01G138000 chr5B 485815617 485817070 1453 True 2163.000 2163 93.54400 983 2435 1 chr5B.!!$R1 1452
6 TraesCS7B01G138000 chr3A 701759762 701761213 1451 True 2159.000 2159 93.53100 983 2432 1 chr3A.!!$R1 1449
7 TraesCS7B01G138000 chr1A 98289490 98293695 4205 True 917.375 2150 96.84625 1 2431 4 chr1A.!!$R2 2430
8 TraesCS7B01G138000 chr7D 184516770 184520874 4104 True 1541.000 2134 88.82650 1 2428 2 chr7D.!!$R4 2427
9 TraesCS7B01G138000 chr4D 85730127 85734241 4114 False 1584.000 2122 89.49850 1 2428 2 chr4D.!!$F1 2427
10 TraesCS7B01G138000 chr6D 460762270 460766370 4100 False 1551.000 2067 89.10750 1 2433 2 chr6D.!!$F2 2432
11 TraesCS7B01G138000 chr7A 383416003 383421520 5517 False 1435.500 1587 93.28800 1 2438 2 chr7A.!!$F1 2437
12 TraesCS7B01G138000 chr7A 626859919 626860897 978 True 1312.000 1312 90.96400 1 976 1 chr7A.!!$R2 975
13 TraesCS7B01G138000 chr7A 626782269 626783246 977 True 1301.000 1301 90.75200 1 976 1 chr7A.!!$R1 975
14 TraesCS7B01G138000 chr7A 626840508 626846212 5704 True 1277.000 1290 90.38700 1 976 2 chr7A.!!$R3 975
15 TraesCS7B01G138000 chr2D 624000136 624001111 975 True 1504.000 1504 94.50100 6 981 1 chr2D.!!$R3 975
16 TraesCS7B01G138000 chr2D 393689605 393690580 975 True 1435.000 1435 93.21200 1 981 1 chr2D.!!$R1 980
17 TraesCS7B01G138000 chr2D 648413071 648414020 949 False 766.000 904 94.60500 1 981 2 chr2D.!!$F3 980
18 TraesCS7B01G138000 chr5D 401761868 401764591 2723 True 909.000 1496 96.29750 1 2435 2 chr5D.!!$R2 2434
19 TraesCS7B01G138000 chr1D 267389411 267390329 918 True 953.000 953 85.89900 1 900 1 chr1D.!!$R1 899
20 TraesCS7B01G138000 chr6B 331339900 331340697 797 False 909.000 909 87.73500 1666 2440 1 chr6B.!!$F1 774
21 TraesCS7B01G138000 chr1B 645733639 645734583 944 False 833.000 833 82.98300 1 978 1 chr1B.!!$F2 977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.179936 CTTGCTAGGCTAGGCTTGCT 59.820 55.000 37.99 15.84 0.00 3.91 F
58 59 1.213799 GGCTAGGCTTGCTGTTTGC 59.786 57.895 19.81 0.00 43.25 3.68 F
1640 8328 0.373716 GAGGTGGCAAACGCGATAAG 59.626 55.000 15.93 0.00 0.00 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 6442 0.032952 TCCGAACAACTTCAGTCCCG 59.967 55.0 0.0 0.0 0.00 5.14 R
1925 8613 0.388520 TGAATCACACGTCAGGAGCG 60.389 55.0 0.0 0.0 0.00 5.03 R
2590 10360 0.260816 TCGGGACCAGCCATAGTAGT 59.739 55.0 0.0 0.0 38.95 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.179936 CTTGCTAGGCTAGGCTTGCT 59.820 55.000 37.99 15.84 0.00 3.91
58 59 1.213799 GGCTAGGCTTGCTGTTTGC 59.786 57.895 19.81 0.00 43.25 3.68
391 414 3.822735 TCAGATTTGACAGGGAAAGCTTG 59.177 43.478 0.00 0.00 26.58 4.01
425 514 3.083997 GTCTGTCCGCCCCCATCT 61.084 66.667 0.00 0.00 0.00 2.90
534 624 7.733773 TCAGGAATTGATTGGTACTAGAAGA 57.266 36.000 0.00 0.00 0.00 2.87
793 906 8.739972 AGGAATTGATTTTACTGGAACATGTAC 58.260 33.333 0.00 0.00 38.20 2.90
842 956 6.682423 TTTGGTCTGTACTGAATATGCATG 57.318 37.500 10.16 0.00 0.00 4.06
859 973 5.735285 TGCATGCAGAGCTATCTACTTAT 57.265 39.130 18.46 0.00 33.22 1.73
1052 6261 6.486657 CAGTCTGAGGGAAAACAATTTGTCTA 59.513 38.462 1.83 0.00 0.00 2.59
1147 6356 7.309194 GGCAAGTTTATCACAAGTTCCATAAGT 60.309 37.037 0.00 0.00 0.00 2.24
1640 8328 0.373716 GAGGTGGCAAACGCGATAAG 59.626 55.000 15.93 0.00 0.00 1.73
1652 8340 1.000496 CGCGATAAGGGTAAGAGGGTC 60.000 57.143 0.00 0.00 0.00 4.46
1889 8577 1.092921 TTCAAGAGTTTGTGCGGCGT 61.093 50.000 9.37 0.00 35.73 5.68
1919 8607 4.151867 GGTGATAACTTTCCTGAACACGTC 59.848 45.833 0.00 0.00 0.00 4.34
1925 8613 2.163818 TTCCTGAACACGTCCATGTC 57.836 50.000 0.00 0.00 30.55 3.06
2034 8722 3.553904 TGCCTCATGCTTGCATGTAATA 58.446 40.909 27.80 13.05 42.00 0.98
2318 10087 1.301293 GACTAGCTGCTGGCCCTTT 59.699 57.895 13.43 0.00 43.05 3.11
2342 10111 1.804372 GCAACGGCATTGAACCAAACA 60.804 47.619 0.00 0.00 41.23 2.83
2438 10208 0.889186 ACCAAACGCACCCTTAGCTG 60.889 55.000 0.00 0.00 0.00 4.24
2440 10210 1.609580 CCAAACGCACCCTTAGCTGTA 60.610 52.381 0.00 0.00 0.00 2.74
2441 10211 1.732259 CAAACGCACCCTTAGCTGTAG 59.268 52.381 0.00 0.00 0.00 2.74
2456 10226 2.610833 GCTGTAGCGTTGGGTTTATACC 59.389 50.000 0.00 0.00 44.22 2.73
2469 10239 4.453751 GGTTTATACCCCACGCTAATCAA 58.546 43.478 0.00 0.00 38.60 2.57
2471 10241 5.220912 GGTTTATACCCCACGCTAATCAAAC 60.221 44.000 0.00 0.00 38.60 2.93
2472 10242 2.012937 TACCCCACGCTAATCAAACG 57.987 50.000 0.00 0.00 0.00 3.60
2473 10243 1.303091 ACCCCACGCTAATCAAACGC 61.303 55.000 0.00 0.00 0.00 4.84
2474 10244 1.024579 CCCCACGCTAATCAAACGCT 61.025 55.000 0.00 0.00 0.00 5.07
2475 10245 1.647346 CCCACGCTAATCAAACGCTA 58.353 50.000 0.00 0.00 0.00 4.26
2476 10246 1.326548 CCCACGCTAATCAAACGCTAC 59.673 52.381 0.00 0.00 0.00 3.58
2477 10247 2.268298 CCACGCTAATCAAACGCTACT 58.732 47.619 0.00 0.00 0.00 2.57
2479 10249 3.242248 CCACGCTAATCAAACGCTACTAC 59.758 47.826 0.00 0.00 0.00 2.73
2480 10250 4.103357 CACGCTAATCAAACGCTACTACT 58.897 43.478 0.00 0.00 0.00 2.57
2481 10251 5.268544 CACGCTAATCAAACGCTACTACTA 58.731 41.667 0.00 0.00 0.00 1.82
2483 10253 7.073883 CACGCTAATCAAACGCTACTACTATA 58.926 38.462 0.00 0.00 0.00 1.31
2484 10254 7.749570 CACGCTAATCAAACGCTACTACTATAT 59.250 37.037 0.00 0.00 0.00 0.86
2485 10255 7.749570 ACGCTAATCAAACGCTACTACTATATG 59.250 37.037 0.00 0.00 0.00 1.78
2486 10256 7.218393 CGCTAATCAAACGCTACTACTATATGG 59.782 40.741 0.00 0.00 0.00 2.74
2487 10257 7.009357 GCTAATCAAACGCTACTACTATATGGC 59.991 40.741 0.00 0.00 0.00 4.40
2489 10259 6.340962 TCAAACGCTACTACTATATGGCAT 57.659 37.500 4.88 4.88 0.00 4.40
2490 10260 6.156519 TCAAACGCTACTACTATATGGCATG 58.843 40.000 10.98 0.00 0.00 4.06
2491 10261 4.111375 ACGCTACTACTATATGGCATGC 57.889 45.455 9.90 9.90 0.00 4.06
2492 10262 3.119101 ACGCTACTACTATATGGCATGCC 60.119 47.826 30.54 30.54 0.00 4.40
2493 10263 3.448686 GCTACTACTATATGGCATGCCG 58.551 50.000 30.87 18.73 39.42 5.69
2494 10264 3.119101 GCTACTACTATATGGCATGCCGT 60.119 47.826 33.05 33.05 39.42 5.68
2495 10265 3.319137 ACTACTATATGGCATGCCGTG 57.681 47.619 36.66 24.20 39.42 4.94
2496 10266 2.028112 ACTACTATATGGCATGCCGTGG 60.028 50.000 36.66 27.06 39.42 4.94
2497 10267 1.055849 ACTATATGGCATGCCGTGGA 58.944 50.000 36.66 23.93 39.42 4.02
2498 10268 1.630369 ACTATATGGCATGCCGTGGAT 59.370 47.619 36.66 26.16 39.42 3.41
2499 10269 2.011947 CTATATGGCATGCCGTGGATG 58.988 52.381 36.66 21.09 39.42 3.51
2500 10270 1.246056 ATATGGCATGCCGTGGATGC 61.246 55.000 36.66 17.72 44.65 3.91
2501 10271 2.621517 TATGGCATGCCGTGGATGCA 62.622 55.000 36.66 16.62 46.77 3.96
2502 10272 4.197498 GGCATGCCGTGGATGCAC 62.197 66.667 23.48 7.39 46.77 4.57
2503 10273 4.541482 GCATGCCGTGGATGCACG 62.541 66.667 30.14 30.14 44.74 5.34
2509 10279 2.815211 CGTGGATGCACGGTGGAG 60.815 66.667 29.56 2.51 44.01 3.86
2510 10280 2.662596 GTGGATGCACGGTGGAGA 59.337 61.111 10.60 0.00 0.00 3.71
2511 10281 1.741770 GTGGATGCACGGTGGAGAC 60.742 63.158 10.60 4.92 0.00 3.36
2512 10282 2.125106 GGATGCACGGTGGAGACC 60.125 66.667 10.60 11.04 39.14 3.85
2513 10283 2.662596 GATGCACGGTGGAGACCA 59.337 61.111 10.60 0.00 43.33 4.02
2514 10284 1.221840 GATGCACGGTGGAGACCAT 59.778 57.895 10.60 4.14 43.33 3.55
2515 10285 0.392998 GATGCACGGTGGAGACCATT 60.393 55.000 10.60 0.00 43.33 3.16
2516 10286 0.038166 ATGCACGGTGGAGACCATTT 59.962 50.000 10.60 0.00 43.33 2.32
2517 10287 0.687920 TGCACGGTGGAGACCATTTA 59.312 50.000 10.60 0.00 43.33 1.40
2518 10288 1.338674 TGCACGGTGGAGACCATTTAG 60.339 52.381 10.60 0.00 43.33 1.85
2519 10289 1.338769 GCACGGTGGAGACCATTTAGT 60.339 52.381 10.60 0.00 43.33 2.24
2520 10290 2.093869 GCACGGTGGAGACCATTTAGTA 60.094 50.000 10.60 0.00 43.33 1.82
2521 10291 3.782046 CACGGTGGAGACCATTTAGTAG 58.218 50.000 0.00 0.00 43.33 2.57
2522 10292 3.194968 CACGGTGGAGACCATTTAGTAGT 59.805 47.826 0.00 0.00 43.33 2.73
2523 10293 4.400251 CACGGTGGAGACCATTTAGTAGTA 59.600 45.833 0.00 0.00 43.33 1.82
2524 10294 4.643784 ACGGTGGAGACCATTTAGTAGTAG 59.356 45.833 0.00 0.00 43.33 2.57
2525 10295 4.499357 CGGTGGAGACCATTTAGTAGTAGC 60.499 50.000 0.00 0.00 43.33 3.58
2526 10296 4.499357 GGTGGAGACCATTTAGTAGTAGCG 60.499 50.000 0.00 0.00 42.59 4.26
2527 10297 4.097589 GTGGAGACCATTTAGTAGTAGCGT 59.902 45.833 0.00 0.00 35.28 5.07
2528 10298 4.097437 TGGAGACCATTTAGTAGTAGCGTG 59.903 45.833 0.00 0.00 0.00 5.34
2529 10299 4.499357 GGAGACCATTTAGTAGTAGCGTGG 60.499 50.000 0.00 0.00 0.00 4.94
2530 10300 3.383825 AGACCATTTAGTAGTAGCGTGGG 59.616 47.826 8.80 0.00 0.00 4.61
2531 10301 3.368248 ACCATTTAGTAGTAGCGTGGGA 58.632 45.455 8.80 0.00 0.00 4.37
2532 10302 3.965347 ACCATTTAGTAGTAGCGTGGGAT 59.035 43.478 8.80 0.00 0.00 3.85
2533 10303 4.407945 ACCATTTAGTAGTAGCGTGGGATT 59.592 41.667 8.80 0.00 0.00 3.01
2534 10304 5.104652 ACCATTTAGTAGTAGCGTGGGATTT 60.105 40.000 8.80 0.00 0.00 2.17
2535 10305 6.098695 ACCATTTAGTAGTAGCGTGGGATTTA 59.901 38.462 8.80 0.00 0.00 1.40
2536 10306 7.159372 CCATTTAGTAGTAGCGTGGGATTTAT 58.841 38.462 0.00 0.00 0.00 1.40
2537 10307 8.308931 CCATTTAGTAGTAGCGTGGGATTTATA 58.691 37.037 0.00 0.00 0.00 0.98
2538 10308 9.701098 CATTTAGTAGTAGCGTGGGATTTATAA 57.299 33.333 0.00 0.00 0.00 0.98
2539 10309 9.702494 ATTTAGTAGTAGCGTGGGATTTATAAC 57.298 33.333 0.00 0.00 0.00 1.89
2540 10310 6.094193 AGTAGTAGCGTGGGATTTATAACC 57.906 41.667 0.00 0.00 0.00 2.85
2541 10311 4.347360 AGTAGCGTGGGATTTATAACCC 57.653 45.455 4.50 4.50 45.74 4.11
2546 10316 3.317449 GGGATTTATAACCCGCGCT 57.683 52.632 5.56 0.00 36.56 5.92
2547 10317 2.460757 GGGATTTATAACCCGCGCTA 57.539 50.000 5.56 0.00 36.56 4.26
2548 10318 2.071540 GGGATTTATAACCCGCGCTAC 58.928 52.381 5.56 0.00 36.56 3.58
2549 10319 2.289257 GGGATTTATAACCCGCGCTACT 60.289 50.000 5.56 0.00 36.56 2.57
2550 10320 3.056607 GGGATTTATAACCCGCGCTACTA 60.057 47.826 5.56 0.00 36.56 1.82
2551 10321 3.922850 GGATTTATAACCCGCGCTACTAC 59.077 47.826 5.56 0.00 0.00 2.73
2552 10322 4.321527 GGATTTATAACCCGCGCTACTACT 60.322 45.833 5.56 0.00 0.00 2.57
2553 10323 5.106157 GGATTTATAACCCGCGCTACTACTA 60.106 44.000 5.56 0.00 0.00 1.82
2554 10324 5.964958 TTTATAACCCGCGCTACTACTAT 57.035 39.130 5.56 0.00 0.00 2.12
2555 10325 5.551760 TTATAACCCGCGCTACTACTATC 57.448 43.478 5.56 0.00 0.00 2.08
2556 10326 1.683943 AACCCGCGCTACTACTATCA 58.316 50.000 5.56 0.00 0.00 2.15
2557 10327 1.683943 ACCCGCGCTACTACTATCAA 58.316 50.000 5.56 0.00 0.00 2.57
2558 10328 1.336125 ACCCGCGCTACTACTATCAAC 59.664 52.381 5.56 0.00 0.00 3.18
2559 10329 1.607628 CCCGCGCTACTACTATCAACT 59.392 52.381 5.56 0.00 0.00 3.16
2560 10330 2.034305 CCCGCGCTACTACTATCAACTT 59.966 50.000 5.56 0.00 0.00 2.66
2561 10331 3.251729 CCCGCGCTACTACTATCAACTTA 59.748 47.826 5.56 0.00 0.00 2.24
2562 10332 4.465016 CCGCGCTACTACTATCAACTTAG 58.535 47.826 5.56 0.00 0.00 2.18
2563 10333 4.024218 CCGCGCTACTACTATCAACTTAGT 60.024 45.833 5.56 0.00 36.43 2.24
2564 10334 5.178252 CCGCGCTACTACTATCAACTTAGTA 59.822 44.000 5.56 0.00 34.35 1.82
2573 10343 6.374565 ACTATCAACTTAGTAGTAGCGTGG 57.625 41.667 0.00 0.00 33.17 4.94
2574 10344 4.650754 ATCAACTTAGTAGTAGCGTGGG 57.349 45.455 0.00 0.00 33.17 4.61
2575 10345 3.424703 TCAACTTAGTAGTAGCGTGGGT 58.575 45.455 0.00 0.00 33.17 4.51
2576 10346 3.828451 TCAACTTAGTAGTAGCGTGGGTT 59.172 43.478 0.00 0.00 33.17 4.11
2577 10347 4.281688 TCAACTTAGTAGTAGCGTGGGTTT 59.718 41.667 0.00 0.00 33.17 3.27
2578 10348 5.476599 TCAACTTAGTAGTAGCGTGGGTTTA 59.523 40.000 0.00 0.00 33.17 2.01
2579 10349 6.153340 TCAACTTAGTAGTAGCGTGGGTTTAT 59.847 38.462 0.00 0.00 33.17 1.40
2580 10350 7.339212 TCAACTTAGTAGTAGCGTGGGTTTATA 59.661 37.037 0.00 0.00 33.17 0.98
2581 10351 7.645058 ACTTAGTAGTAGCGTGGGTTTATAA 57.355 36.000 0.00 0.00 31.21 0.98
2582 10352 7.484140 ACTTAGTAGTAGCGTGGGTTTATAAC 58.516 38.462 0.00 0.00 31.21 1.89
2583 10353 7.416777 ACTTAGTAGTAGCGTGGGTTTATAACC 60.417 40.741 0.00 0.00 41.07 2.85
2592 10362 2.229675 GGTTTATAACCCGCGCTACT 57.770 50.000 5.56 0.00 46.12 2.57
2593 10363 3.369546 GGTTTATAACCCGCGCTACTA 57.630 47.619 5.56 0.00 46.12 1.82
2594 10364 3.052745 GGTTTATAACCCGCGCTACTAC 58.947 50.000 5.56 0.00 46.12 2.73
2595 10365 3.243535 GGTTTATAACCCGCGCTACTACT 60.244 47.826 5.56 0.00 46.12 2.57
2596 10366 4.023193 GGTTTATAACCCGCGCTACTACTA 60.023 45.833 5.56 0.00 46.12 1.82
2597 10367 5.335976 GGTTTATAACCCGCGCTACTACTAT 60.336 44.000 5.56 0.00 46.12 2.12
2598 10368 3.844577 ATAACCCGCGCTACTACTATG 57.155 47.619 5.56 0.00 0.00 2.23
2599 10369 0.672342 AACCCGCGCTACTACTATGG 59.328 55.000 5.56 0.00 0.00 2.74
2600 10370 1.080705 CCCGCGCTACTACTATGGC 60.081 63.158 5.56 0.00 0.00 4.40
2601 10371 1.524863 CCCGCGCTACTACTATGGCT 61.525 60.000 5.56 0.00 0.00 4.75
2602 10372 0.387367 CCGCGCTACTACTATGGCTG 60.387 60.000 5.56 0.00 0.00 4.85
2603 10373 0.387367 CGCGCTACTACTATGGCTGG 60.387 60.000 5.56 0.00 0.00 4.85
2604 10374 0.674534 GCGCTACTACTATGGCTGGT 59.325 55.000 0.00 0.00 0.00 4.00
2605 10375 1.336056 GCGCTACTACTATGGCTGGTC 60.336 57.143 0.00 0.00 0.00 4.02
2606 10376 1.269998 CGCTACTACTATGGCTGGTCC 59.730 57.143 0.00 0.00 0.00 4.46
2607 10377 1.619332 GCTACTACTATGGCTGGTCCC 59.381 57.143 0.00 0.00 0.00 4.46
2608 10378 1.887198 CTACTACTATGGCTGGTCCCG 59.113 57.143 0.00 0.00 0.00 5.14
2609 10379 0.260816 ACTACTATGGCTGGTCCCGA 59.739 55.000 0.00 0.00 0.00 5.14
2610 10380 0.962489 CTACTATGGCTGGTCCCGAG 59.038 60.000 0.00 0.00 0.00 4.63
2611 10381 0.469331 TACTATGGCTGGTCCCGAGG 60.469 60.000 0.00 0.00 0.00 4.63
2612 10382 2.445845 TATGGCTGGTCCCGAGGG 60.446 66.667 0.65 0.65 0.00 4.30
2623 10393 4.323477 CCGAGGGGCACGGTGAAA 62.323 66.667 13.29 0.00 44.57 2.69
2624 10394 2.281208 CGAGGGGCACGGTGAAAA 60.281 61.111 13.29 0.00 0.00 2.29
2625 10395 1.674322 CGAGGGGCACGGTGAAAAT 60.674 57.895 13.29 0.00 0.00 1.82
2626 10396 0.391927 CGAGGGGCACGGTGAAAATA 60.392 55.000 13.29 0.00 0.00 1.40
2627 10397 1.828979 GAGGGGCACGGTGAAAATAA 58.171 50.000 13.29 0.00 0.00 1.40
2628 10398 1.471287 GAGGGGCACGGTGAAAATAAC 59.529 52.381 13.29 0.00 0.00 1.89
2629 10399 1.074889 AGGGGCACGGTGAAAATAACT 59.925 47.619 13.29 0.00 0.00 2.24
2630 10400 1.890489 GGGGCACGGTGAAAATAACTT 59.110 47.619 13.29 0.00 0.00 2.66
2631 10401 3.083293 GGGGCACGGTGAAAATAACTTA 58.917 45.455 13.29 0.00 0.00 2.24
2632 10402 3.128068 GGGGCACGGTGAAAATAACTTAG 59.872 47.826 13.29 0.00 0.00 2.18
2633 10403 3.754850 GGGCACGGTGAAAATAACTTAGT 59.245 43.478 13.29 0.00 0.00 2.24
2634 10404 4.937015 GGGCACGGTGAAAATAACTTAGTA 59.063 41.667 13.29 0.00 0.00 1.82
2635 10405 5.064325 GGGCACGGTGAAAATAACTTAGTAG 59.936 44.000 13.29 0.00 0.00 2.57
2636 10406 5.640783 GGCACGGTGAAAATAACTTAGTAGT 59.359 40.000 13.29 0.00 35.68 2.73
2637 10407 6.813152 GGCACGGTGAAAATAACTTAGTAGTA 59.187 38.462 13.29 0.00 33.17 1.82
2638 10408 7.009907 GGCACGGTGAAAATAACTTAGTAGTAG 59.990 40.741 13.29 0.00 33.17 2.57
2639 10409 7.463780 GCACGGTGAAAATAACTTAGTAGTAGC 60.464 40.741 13.29 0.00 33.17 3.58
2640 10410 6.749118 ACGGTGAAAATAACTTAGTAGTAGCG 59.251 38.462 0.00 0.00 33.17 4.26
2641 10411 6.291479 CGGTGAAAATAACTTAGTAGTAGCGC 60.291 42.308 0.00 0.00 33.17 5.92
2642 10412 6.291479 GGTGAAAATAACTTAGTAGTAGCGCG 60.291 42.308 0.00 0.00 33.17 6.86
2643 10413 5.745294 TGAAAATAACTTAGTAGTAGCGCGG 59.255 40.000 8.83 0.00 33.17 6.46
2644 10414 3.911661 ATAACTTAGTAGTAGCGCGGG 57.088 47.619 8.83 0.00 33.17 6.13
2645 10415 1.467920 AACTTAGTAGTAGCGCGGGT 58.532 50.000 8.83 0.00 33.17 5.28
2646 10416 1.467920 ACTTAGTAGTAGCGCGGGTT 58.532 50.000 8.83 0.00 31.21 4.11
2647 10417 2.643551 ACTTAGTAGTAGCGCGGGTTA 58.356 47.619 8.83 0.00 31.21 2.85
2648 10418 3.217626 ACTTAGTAGTAGCGCGGGTTAT 58.782 45.455 8.83 0.00 31.21 1.89
2649 10419 4.389374 ACTTAGTAGTAGCGCGGGTTATA 58.611 43.478 8.83 0.00 31.21 0.98
2650 10420 4.821805 ACTTAGTAGTAGCGCGGGTTATAA 59.178 41.667 8.83 0.00 31.21 0.98
2651 10421 5.299279 ACTTAGTAGTAGCGCGGGTTATAAA 59.701 40.000 8.83 0.00 31.21 1.40
2652 10422 3.969899 AGTAGTAGCGCGGGTTATAAAC 58.030 45.455 8.83 0.00 0.00 2.01
2653 10423 9.541679 ACTTAGTAGTAGCGCGGGTTATAAACC 62.542 44.444 9.73 9.73 41.07 3.27
2662 10432 2.229675 GGTTATAAACCCGCGCTACT 57.770 50.000 5.56 0.00 46.12 2.57
2663 10433 3.369546 GGTTATAAACCCGCGCTACTA 57.630 47.619 5.56 0.00 46.12 1.82
2664 10434 3.052745 GGTTATAAACCCGCGCTACTAC 58.947 50.000 5.56 0.00 46.12 2.73
2665 10435 3.243535 GGTTATAAACCCGCGCTACTACT 60.244 47.826 5.56 0.00 46.12 2.57
2666 10436 4.023193 GGTTATAAACCCGCGCTACTACTA 60.023 45.833 5.56 0.00 46.12 1.82
2667 10437 5.335976 GGTTATAAACCCGCGCTACTACTAT 60.336 44.000 5.56 0.00 46.12 2.12
2668 10438 2.789491 AAACCCGCGCTACTACTATC 57.211 50.000 5.56 0.00 0.00 2.08
2669 10439 1.683943 AACCCGCGCTACTACTATCA 58.316 50.000 5.56 0.00 0.00 2.15
2670 10440 1.683943 ACCCGCGCTACTACTATCAA 58.316 50.000 5.56 0.00 0.00 2.57
2671 10441 1.336125 ACCCGCGCTACTACTATCAAC 59.664 52.381 5.56 0.00 0.00 3.18
2672 10442 1.607628 CCCGCGCTACTACTATCAACT 59.392 52.381 5.56 0.00 0.00 3.16
2673 10443 2.034305 CCCGCGCTACTACTATCAACTT 59.966 50.000 5.56 0.00 0.00 2.66
2674 10444 3.251729 CCCGCGCTACTACTATCAACTTA 59.748 47.826 5.56 0.00 0.00 2.24
2675 10445 4.465016 CCGCGCTACTACTATCAACTTAG 58.535 47.826 5.56 0.00 0.00 2.18
2676 10446 4.024218 CCGCGCTACTACTATCAACTTAGT 60.024 45.833 5.56 0.00 36.43 2.24
2677 10447 5.178252 CCGCGCTACTACTATCAACTTAGTA 59.822 44.000 5.56 0.00 34.35 1.82
2686 10456 8.393671 CTACTATCAACTTAGTAGTAGTGGGG 57.606 42.308 10.36 2.02 43.34 4.96
2687 10457 6.739664 ACTATCAACTTAGTAGTAGTGGGGT 58.260 40.000 4.29 0.00 33.17 4.95
2688 10458 7.187676 ACTATCAACTTAGTAGTAGTGGGGTT 58.812 38.462 4.29 0.00 33.17 4.11
2689 10459 6.947376 ATCAACTTAGTAGTAGTGGGGTTT 57.053 37.500 0.00 0.00 33.17 3.27
2690 10460 9.193806 CTATCAACTTAGTAGTAGTGGGGTTTA 57.806 37.037 0.00 0.00 33.17 2.01
2691 10461 8.619683 ATCAACTTAGTAGTAGTGGGGTTTAT 57.380 34.615 0.00 0.00 33.17 1.40
2692 10462 9.719433 ATCAACTTAGTAGTAGTGGGGTTTATA 57.281 33.333 0.00 0.00 33.17 0.98
2693 10463 9.545928 TCAACTTAGTAGTAGTGGGGTTTATAA 57.454 33.333 0.00 0.00 33.17 0.98
2696 10466 8.762645 ACTTAGTAGTAGTGGGGTTTATAAACC 58.237 37.037 31.35 31.35 44.26 3.27
2711 10481 8.345224 GTTTATAAACCCACGCTACTACTAAG 57.655 38.462 16.14 0.00 32.82 2.18
2712 10482 7.645058 TTATAAACCCACGCTACTACTAAGT 57.355 36.000 0.00 0.00 39.91 2.24
2713 10483 8.746052 TTATAAACCCACGCTACTACTAAGTA 57.254 34.615 0.00 0.00 37.15 2.24
2724 10494 6.456447 CTACTACTAAGTAGCAGTAGCGAG 57.544 45.833 11.18 4.28 46.53 5.03
2725 10495 4.128643 ACTACTAAGTAGCAGTAGCGAGG 58.871 47.826 8.97 0.00 46.25 4.63
2726 10496 4.983141 ACTACTAAGTAGCAGTAGCGAGGG 60.983 50.000 8.97 0.00 46.25 4.30
2727 10497 7.381512 ACTACTAAGTAGCAGTAGCGAGGGT 62.382 48.000 8.97 0.00 46.25 4.34
2728 10498 8.765165 ACTACTAAGTAGCAGTAGCGAGGGTT 62.765 46.154 8.97 0.00 46.25 4.11
2729 10499 9.475170 ACTACTAAGTAGCAGTAGCGAGGGTTA 62.475 44.444 8.97 0.00 46.25 2.85
2747 10517 5.268118 GGTTATAAACCCACGCTACTAGT 57.732 43.478 0.00 0.00 46.12 2.57
2748 10518 6.391227 GGTTATAAACCCACGCTACTAGTA 57.609 41.667 1.89 1.89 46.12 1.82
2749 10519 6.805713 GGTTATAAACCCACGCTACTAGTAA 58.194 40.000 3.76 0.00 46.12 2.24
2750 10520 6.920210 GGTTATAAACCCACGCTACTAGTAAG 59.080 42.308 3.76 3.96 46.12 2.34
2751 10521 2.955477 AACCCACGCTACTAGTAAGC 57.045 50.000 3.76 8.79 0.00 3.09
2758 10528 2.971607 CGCTACTAGTAAGCGTCTGTC 58.028 52.381 25.55 4.20 45.59 3.51
2759 10529 2.608546 CGCTACTAGTAAGCGTCTGTCT 59.391 50.000 25.55 0.00 45.59 3.41
2760 10530 3.801050 CGCTACTAGTAAGCGTCTGTCTA 59.199 47.826 25.55 0.00 45.59 2.59
2761 10531 4.448395 CGCTACTAGTAAGCGTCTGTCTAT 59.552 45.833 25.55 0.00 45.59 1.98
2762 10532 5.632764 CGCTACTAGTAAGCGTCTGTCTATA 59.367 44.000 25.55 0.00 45.59 1.31
2763 10533 6.145209 CGCTACTAGTAAGCGTCTGTCTATAA 59.855 42.308 25.55 0.00 45.59 0.98
2764 10534 7.512297 GCTACTAGTAAGCGTCTGTCTATAAG 58.488 42.308 3.76 0.00 0.00 1.73
2765 10535 6.303021 ACTAGTAAGCGTCTGTCTATAAGC 57.697 41.667 0.00 0.00 0.00 3.09
2766 10536 6.056884 ACTAGTAAGCGTCTGTCTATAAGCT 58.943 40.000 0.00 0.00 36.40 3.74
2767 10537 5.838531 AGTAAGCGTCTGTCTATAAGCTT 57.161 39.130 3.48 3.48 45.37 3.74
2768 10538 6.210287 AGTAAGCGTCTGTCTATAAGCTTT 57.790 37.500 3.20 0.00 43.51 3.51
2769 10539 6.631962 AGTAAGCGTCTGTCTATAAGCTTTT 58.368 36.000 3.20 0.00 43.51 2.27
2770 10540 6.752815 AGTAAGCGTCTGTCTATAAGCTTTTC 59.247 38.462 3.20 1.41 43.51 2.29
2771 10541 4.434520 AGCGTCTGTCTATAAGCTTTTCC 58.565 43.478 3.20 0.00 0.00 3.13
2772 10542 3.556365 GCGTCTGTCTATAAGCTTTTCCC 59.444 47.826 3.20 0.00 0.00 3.97
2773 10543 4.680975 GCGTCTGTCTATAAGCTTTTCCCT 60.681 45.833 3.20 0.00 0.00 4.20
2774 10544 5.451520 GCGTCTGTCTATAAGCTTTTCCCTA 60.452 44.000 3.20 0.00 0.00 3.53
2775 10545 6.210078 CGTCTGTCTATAAGCTTTTCCCTAG 58.790 44.000 3.20 0.00 0.00 3.02
2776 10546 6.183360 CGTCTGTCTATAAGCTTTTCCCTAGT 60.183 42.308 3.20 0.00 0.00 2.57
2777 10547 7.013083 CGTCTGTCTATAAGCTTTTCCCTAGTA 59.987 40.741 3.20 0.00 0.00 1.82
2778 10548 8.354426 GTCTGTCTATAAGCTTTTCCCTAGTAG 58.646 40.741 3.20 0.00 0.00 2.57
2779 10549 8.060075 TCTGTCTATAAGCTTTTCCCTAGTAGT 58.940 37.037 3.20 0.00 0.00 2.73
2780 10550 8.008513 TGTCTATAAGCTTTTCCCTAGTAGTG 57.991 38.462 3.20 0.00 0.00 2.74
2781 10551 7.618512 TGTCTATAAGCTTTTCCCTAGTAGTGT 59.381 37.037 3.20 0.00 0.00 3.55
2782 10552 8.476447 GTCTATAAGCTTTTCCCTAGTAGTGTT 58.524 37.037 3.20 0.00 0.00 3.32
2783 10553 8.693625 TCTATAAGCTTTTCCCTAGTAGTGTTC 58.306 37.037 3.20 0.00 0.00 3.18
2784 10554 5.562298 AAGCTTTTCCCTAGTAGTGTTCA 57.438 39.130 0.00 0.00 0.00 3.18
2785 10555 5.763876 AGCTTTTCCCTAGTAGTGTTCAT 57.236 39.130 0.00 0.00 0.00 2.57
2786 10556 6.869206 AGCTTTTCCCTAGTAGTGTTCATA 57.131 37.500 0.00 0.00 0.00 2.15
2787 10557 6.879400 AGCTTTTCCCTAGTAGTGTTCATAG 58.121 40.000 0.00 0.00 0.00 2.23
2788 10558 6.668283 AGCTTTTCCCTAGTAGTGTTCATAGA 59.332 38.462 0.00 0.00 0.00 1.98
2789 10559 7.345914 AGCTTTTCCCTAGTAGTGTTCATAGAT 59.654 37.037 0.00 0.00 0.00 1.98
2790 10560 7.988028 GCTTTTCCCTAGTAGTGTTCATAGATT 59.012 37.037 0.00 0.00 0.00 2.40
2800 10570 9.539825 AGTAGTGTTCATAGATTATTTGAGCAG 57.460 33.333 0.00 0.00 32.38 4.24
2801 10571 9.534565 GTAGTGTTCATAGATTATTTGAGCAGA 57.465 33.333 0.00 0.00 32.38 4.26
2807 10577 9.676861 TTCATAGATTATTTGAGCAGATATGGG 57.323 33.333 0.00 0.00 0.00 4.00
2808 10578 8.829746 TCATAGATTATTTGAGCAGATATGGGT 58.170 33.333 0.00 0.00 0.00 4.51
2868 10638 9.793252 TTGAAAAGTTCAAAGAATTTCAGAGAG 57.207 29.630 0.99 0.00 45.94 3.20
2869 10639 9.177608 TGAAAAGTTCAAAGAATTTCAGAGAGA 57.822 29.630 0.00 0.00 35.03 3.10
2872 10642 8.744568 AAGTTCAAAGAATTTCAGAGAGAAGT 57.255 30.769 0.00 0.00 35.03 3.01
2873 10643 8.152309 AGTTCAAAGAATTTCAGAGAGAAGTG 57.848 34.615 0.00 0.00 35.03 3.16
2874 10644 7.228308 AGTTCAAAGAATTTCAGAGAGAAGTGG 59.772 37.037 0.00 0.00 35.03 4.00
2875 10645 6.000219 TCAAAGAATTTCAGAGAGAAGTGGG 59.000 40.000 0.00 0.00 35.03 4.61
2876 10646 4.566426 AGAATTTCAGAGAGAAGTGGGG 57.434 45.455 0.00 0.00 37.57 4.96
2877 10647 4.171234 AGAATTTCAGAGAGAAGTGGGGA 58.829 43.478 0.00 0.00 37.57 4.81
2878 10648 4.599241 AGAATTTCAGAGAGAAGTGGGGAA 59.401 41.667 0.00 0.00 37.57 3.97
2879 10649 5.252630 AGAATTTCAGAGAGAAGTGGGGAAT 59.747 40.000 0.00 0.00 37.57 3.01
2880 10650 4.559862 TTTCAGAGAGAAGTGGGGAATC 57.440 45.455 0.00 0.00 37.57 2.52
2881 10651 3.190383 TCAGAGAGAAGTGGGGAATCA 57.810 47.619 0.00 0.00 0.00 2.57
2882 10652 3.729108 TCAGAGAGAAGTGGGGAATCAT 58.271 45.455 0.00 0.00 0.00 2.45
2883 10653 3.708631 TCAGAGAGAAGTGGGGAATCATC 59.291 47.826 0.00 0.00 0.00 2.92
2884 10654 2.697751 AGAGAGAAGTGGGGAATCATCG 59.302 50.000 0.00 0.00 0.00 3.84
2885 10655 2.432510 GAGAGAAGTGGGGAATCATCGT 59.567 50.000 0.00 0.00 0.00 3.73
2886 10656 3.637229 GAGAGAAGTGGGGAATCATCGTA 59.363 47.826 0.00 0.00 0.00 3.43
2887 10657 4.030913 AGAGAAGTGGGGAATCATCGTAA 58.969 43.478 0.00 0.00 0.00 3.18
2888 10658 4.120589 GAGAAGTGGGGAATCATCGTAAC 58.879 47.826 0.00 0.00 0.00 2.50
2889 10659 3.517901 AGAAGTGGGGAATCATCGTAACA 59.482 43.478 0.00 0.00 0.00 2.41
2890 10660 3.992943 AGTGGGGAATCATCGTAACAA 57.007 42.857 0.00 0.00 0.00 2.83
2891 10661 3.873910 AGTGGGGAATCATCGTAACAAG 58.126 45.455 0.00 0.00 0.00 3.16
2892 10662 3.517901 AGTGGGGAATCATCGTAACAAGA 59.482 43.478 0.00 0.00 0.00 3.02
2893 10663 4.019681 AGTGGGGAATCATCGTAACAAGAA 60.020 41.667 0.00 0.00 0.00 2.52
2894 10664 4.698304 GTGGGGAATCATCGTAACAAGAAA 59.302 41.667 0.00 0.00 0.00 2.52
2895 10665 5.182380 GTGGGGAATCATCGTAACAAGAAAA 59.818 40.000 0.00 0.00 0.00 2.29
2896 10666 5.949354 TGGGGAATCATCGTAACAAGAAAAT 59.051 36.000 0.00 0.00 0.00 1.82
2897 10667 7.066525 GTGGGGAATCATCGTAACAAGAAAATA 59.933 37.037 0.00 0.00 0.00 1.40
2898 10668 7.612244 TGGGGAATCATCGTAACAAGAAAATAA 59.388 33.333 0.00 0.00 0.00 1.40
2899 10669 8.463607 GGGGAATCATCGTAACAAGAAAATAAA 58.536 33.333 0.00 0.00 0.00 1.40
2900 10670 9.503427 GGGAATCATCGTAACAAGAAAATAAAG 57.497 33.333 0.00 0.00 0.00 1.85
2919 10689 5.896922 AAAGTTTCTATGATCTGATCGCG 57.103 39.130 12.65 0.00 0.00 5.87
2920 10690 4.837896 AGTTTCTATGATCTGATCGCGA 57.162 40.909 13.09 13.09 0.00 5.87
2921 10691 5.188327 AGTTTCTATGATCTGATCGCGAA 57.812 39.130 15.24 11.23 0.00 4.70
2922 10692 5.218885 AGTTTCTATGATCTGATCGCGAAG 58.781 41.667 15.24 7.29 0.00 3.79
2923 10693 3.839051 TCTATGATCTGATCGCGAAGG 57.161 47.619 15.24 6.44 0.00 3.46
2924 10694 2.095008 TCTATGATCTGATCGCGAAGGC 60.095 50.000 15.24 6.46 0.00 4.35
2937 10707 3.675467 GCGAAGGCGAATATTTGAGTT 57.325 42.857 6.89 0.00 40.82 3.01
2938 10708 4.789095 GCGAAGGCGAATATTTGAGTTA 57.211 40.909 6.89 0.00 40.82 2.24
2939 10709 5.344207 GCGAAGGCGAATATTTGAGTTAT 57.656 39.130 6.89 0.00 40.82 1.89
2940 10710 5.140177 GCGAAGGCGAATATTTGAGTTATG 58.860 41.667 6.89 0.00 40.82 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.254084 CCCAAAAGCTAAATATTTTTGCGCTAG 60.254 37.037 9.73 0.00 39.34 3.42
159 161 2.120355 AATTTTTCGCGCGTTCCGGT 62.120 50.000 30.98 9.82 37.44 5.28
217 220 7.343833 AGTGGAGAACGTAGATTTAGGGATTTA 59.656 37.037 0.00 0.00 0.00 1.40
363 386 0.379669 CCTGTCAAATCTGATGCGCC 59.620 55.000 4.18 0.00 33.05 6.53
364 387 0.379669 CCCTGTCAAATCTGATGCGC 59.620 55.000 0.00 0.00 33.05 6.09
365 388 2.028420 TCCCTGTCAAATCTGATGCG 57.972 50.000 0.00 0.00 33.05 4.73
366 389 3.428589 GCTTTCCCTGTCAAATCTGATGC 60.429 47.826 0.00 0.00 33.05 3.91
367 390 4.015084 AGCTTTCCCTGTCAAATCTGATG 58.985 43.478 0.00 0.00 33.05 3.07
391 414 1.986575 GACTTGAGCAAGGCGGATGC 61.987 60.000 14.14 5.06 42.53 3.91
553 643 4.153411 AGATGACGGGGAGTATAGAAAGG 58.847 47.826 0.00 0.00 0.00 3.11
598 688 1.142688 ATCCCAAAGCCAGGTCACCT 61.143 55.000 0.00 0.00 0.00 4.00
758 870 6.750501 CAGTAAAATCAATTCCTGTCATGCAG 59.249 38.462 9.40 9.40 44.63 4.41
842 956 4.219507 TGCCTGATAAGTAGATAGCTCTGC 59.780 45.833 0.00 0.00 34.59 4.26
981 1133 3.763897 GCATTTCATCTACAACTTGGGGT 59.236 43.478 0.00 0.00 0.00 4.95
1052 6261 4.285517 ACTCCTCATGATGTGTCTCTTTGT 59.714 41.667 0.00 0.00 0.00 2.83
1147 6356 4.705110 TGATCTTCCACTGACCTTTCAA 57.295 40.909 0.00 0.00 0.00 2.69
1233 6442 0.032952 TCCGAACAACTTCAGTCCCG 59.967 55.000 0.00 0.00 0.00 5.14
1235 6444 3.040147 TCATCCGAACAACTTCAGTCC 57.960 47.619 0.00 0.00 0.00 3.85
1640 8328 1.975680 TCACACTTGACCCTCTTACCC 59.024 52.381 0.00 0.00 0.00 3.69
1652 8340 4.038042 TGAACTACACTCTCCTCACACTTG 59.962 45.833 0.00 0.00 0.00 3.16
1889 8577 2.640826 AGGAAAGTTATCACCGACCCAA 59.359 45.455 0.00 0.00 0.00 4.12
1919 8607 1.807165 CACGTCAGGAGCGACATGG 60.807 63.158 0.00 0.00 35.54 3.66
1925 8613 0.388520 TGAATCACACGTCAGGAGCG 60.389 55.000 0.00 0.00 0.00 5.03
2034 8722 6.642131 CCACGAATGAAAAACTGAATGACATT 59.358 34.615 0.00 0.00 0.00 2.71
2056 8744 5.475564 TCTGGGTAACAAGCTTATTTTCCAC 59.524 40.000 14.10 0.20 39.74 4.02
2096 8788 7.426929 AATTTAACACACTTTGCAAACACAA 57.573 28.000 8.05 0.00 0.00 3.33
2208 8970 5.532032 TGCATCAACAGTACAATATCATGGG 59.468 40.000 0.00 0.00 0.00 4.00
2210 8972 8.964150 CAAATGCATCAACAGTACAATATCATG 58.036 33.333 0.00 0.00 0.00 3.07
2318 10087 1.523154 GGTTCAATGCCGTTGCTGGA 61.523 55.000 0.00 0.00 37.74 3.86
2342 10111 2.648059 CTACCTTTGCCTTAGCTGCAT 58.352 47.619 1.02 0.00 38.76 3.96
2448 10218 5.502869 CGTTTGATTAGCGTGGGGTATAAAC 60.503 44.000 0.00 0.00 0.00 2.01
2449 10219 4.571580 CGTTTGATTAGCGTGGGGTATAAA 59.428 41.667 0.00 0.00 0.00 1.40
2451 10221 3.719924 CGTTTGATTAGCGTGGGGTATA 58.280 45.455 0.00 0.00 0.00 1.47
2452 10222 2.557317 CGTTTGATTAGCGTGGGGTAT 58.443 47.619 0.00 0.00 0.00 2.73
2453 10223 2.008045 GCGTTTGATTAGCGTGGGGTA 61.008 52.381 0.00 0.00 0.00 3.69
2454 10224 1.303091 GCGTTTGATTAGCGTGGGGT 61.303 55.000 0.00 0.00 0.00 4.95
2456 10226 1.326548 GTAGCGTTTGATTAGCGTGGG 59.673 52.381 0.00 0.00 35.78 4.61
2457 10227 2.268298 AGTAGCGTTTGATTAGCGTGG 58.732 47.619 0.00 0.00 35.78 4.94
2458 10228 4.103357 AGTAGTAGCGTTTGATTAGCGTG 58.897 43.478 0.00 0.00 35.78 5.34
2459 10229 4.367386 AGTAGTAGCGTTTGATTAGCGT 57.633 40.909 0.00 0.00 35.78 5.07
2460 10230 7.218393 CCATATAGTAGTAGCGTTTGATTAGCG 59.782 40.741 0.00 0.00 35.78 4.26
2461 10231 7.009357 GCCATATAGTAGTAGCGTTTGATTAGC 59.991 40.741 0.00 0.00 0.00 3.09
2462 10232 8.027189 TGCCATATAGTAGTAGCGTTTGATTAG 58.973 37.037 0.00 0.00 0.00 1.73
2463 10233 7.888424 TGCCATATAGTAGTAGCGTTTGATTA 58.112 34.615 0.00 0.00 0.00 1.75
2465 10235 6.340962 TGCCATATAGTAGTAGCGTTTGAT 57.659 37.500 0.00 0.00 0.00 2.57
2467 10237 5.163953 GCATGCCATATAGTAGTAGCGTTTG 60.164 44.000 6.36 0.00 0.00 2.93
2469 10239 4.495422 GCATGCCATATAGTAGTAGCGTT 58.505 43.478 6.36 0.00 0.00 4.84
2471 10241 3.448686 GGCATGCCATATAGTAGTAGCG 58.551 50.000 32.08 0.00 35.81 4.26
2472 10242 3.119101 ACGGCATGCCATATAGTAGTAGC 60.119 47.826 34.93 4.14 35.37 3.58
2473 10243 4.424626 CACGGCATGCCATATAGTAGTAG 58.575 47.826 34.93 16.82 35.37 2.57
2474 10244 3.194755 CCACGGCATGCCATATAGTAGTA 59.805 47.826 34.93 0.00 35.37 1.82
2475 10245 2.028112 CCACGGCATGCCATATAGTAGT 60.028 50.000 34.93 19.44 35.37 2.73
2476 10246 2.233676 TCCACGGCATGCCATATAGTAG 59.766 50.000 34.93 18.77 35.37 2.57
2477 10247 2.252714 TCCACGGCATGCCATATAGTA 58.747 47.619 34.93 11.39 35.37 1.82
2479 10249 2.011947 CATCCACGGCATGCCATATAG 58.988 52.381 34.93 20.96 35.37 1.31
2480 10250 1.950015 GCATCCACGGCATGCCATATA 60.950 52.381 34.93 18.31 40.79 0.86
2481 10251 1.246056 GCATCCACGGCATGCCATAT 61.246 55.000 34.93 17.93 40.79 1.78
2483 10253 3.221389 GCATCCACGGCATGCCAT 61.221 61.111 34.93 20.33 40.79 4.40
2484 10254 4.737177 TGCATCCACGGCATGCCA 62.737 61.111 34.93 17.33 45.25 4.92
2485 10255 4.197498 GTGCATCCACGGCATGCC 62.197 66.667 27.67 27.67 45.25 4.40
2493 10263 1.741770 GTCTCCACCGTGCATCCAC 60.742 63.158 0.00 0.00 38.62 4.02
2494 10264 2.662596 GTCTCCACCGTGCATCCA 59.337 61.111 0.00 0.00 0.00 3.41
2495 10265 2.125106 GGTCTCCACCGTGCATCC 60.125 66.667 0.00 0.00 31.06 3.51
2503 10273 4.499357 CGCTACTACTAAATGGTCTCCACC 60.499 50.000 0.00 0.00 44.10 4.61
2504 10274 4.097589 ACGCTACTACTAAATGGTCTCCAC 59.902 45.833 0.00 0.00 35.80 4.02
2505 10275 4.097437 CACGCTACTACTAAATGGTCTCCA 59.903 45.833 0.00 0.00 38.19 3.86
2506 10276 4.499357 CCACGCTACTACTAAATGGTCTCC 60.499 50.000 0.00 0.00 0.00 3.71
2507 10277 4.499357 CCCACGCTACTACTAAATGGTCTC 60.499 50.000 0.00 0.00 0.00 3.36
2508 10278 3.383825 CCCACGCTACTACTAAATGGTCT 59.616 47.826 0.00 0.00 0.00 3.85
2509 10279 3.382546 TCCCACGCTACTACTAAATGGTC 59.617 47.826 0.00 0.00 0.00 4.02
2510 10280 3.368248 TCCCACGCTACTACTAAATGGT 58.632 45.455 0.00 0.00 0.00 3.55
2511 10281 4.602340 ATCCCACGCTACTACTAAATGG 57.398 45.455 0.00 0.00 0.00 3.16
2512 10282 9.701098 TTATAAATCCCACGCTACTACTAAATG 57.299 33.333 0.00 0.00 0.00 2.32
2513 10283 9.702494 GTTATAAATCCCACGCTACTACTAAAT 57.298 33.333 0.00 0.00 0.00 1.40
2514 10284 8.143835 GGTTATAAATCCCACGCTACTACTAAA 58.856 37.037 0.00 0.00 0.00 1.85
2515 10285 7.255942 GGGTTATAAATCCCACGCTACTACTAA 60.256 40.741 6.33 0.00 42.95 2.24
2516 10286 6.209391 GGGTTATAAATCCCACGCTACTACTA 59.791 42.308 6.33 0.00 42.95 1.82
2517 10287 5.011431 GGGTTATAAATCCCACGCTACTACT 59.989 44.000 6.33 0.00 42.95 2.57
2518 10288 5.233225 GGGTTATAAATCCCACGCTACTAC 58.767 45.833 6.33 0.00 42.95 2.73
2519 10289 4.022068 CGGGTTATAAATCCCACGCTACTA 60.022 45.833 10.85 0.00 43.57 1.82
2520 10290 3.243975 CGGGTTATAAATCCCACGCTACT 60.244 47.826 10.85 0.00 43.57 2.57
2521 10291 3.062042 CGGGTTATAAATCCCACGCTAC 58.938 50.000 10.85 0.00 43.57 3.58
2522 10292 2.548493 GCGGGTTATAAATCCCACGCTA 60.548 50.000 11.85 0.00 43.57 4.26
2523 10293 1.812708 GCGGGTTATAAATCCCACGCT 60.813 52.381 11.85 0.00 43.57 5.07
2524 10294 0.589708 GCGGGTTATAAATCCCACGC 59.410 55.000 10.85 8.05 43.57 5.34
2525 10295 0.863144 CGCGGGTTATAAATCCCACG 59.137 55.000 10.85 8.96 43.57 4.94
2526 10296 0.589708 GCGCGGGTTATAAATCCCAC 59.410 55.000 8.83 1.53 43.57 4.61
2527 10297 0.470766 AGCGCGGGTTATAAATCCCA 59.529 50.000 8.83 0.00 43.57 4.37
2528 10298 2.071540 GTAGCGCGGGTTATAAATCCC 58.928 52.381 8.83 1.69 40.26 3.85
2529 10299 3.036075 AGTAGCGCGGGTTATAAATCC 57.964 47.619 8.83 0.00 0.00 3.01
2530 10300 4.802999 AGTAGTAGCGCGGGTTATAAATC 58.197 43.478 8.83 0.00 0.00 2.17
2531 10301 4.861102 AGTAGTAGCGCGGGTTATAAAT 57.139 40.909 8.83 0.00 0.00 1.40
2532 10302 5.473162 TGATAGTAGTAGCGCGGGTTATAAA 59.527 40.000 8.83 0.00 0.00 1.40
2533 10303 5.003160 TGATAGTAGTAGCGCGGGTTATAA 58.997 41.667 8.83 0.00 0.00 0.98
2534 10304 4.578871 TGATAGTAGTAGCGCGGGTTATA 58.421 43.478 8.83 0.00 0.00 0.98
2535 10305 3.415212 TGATAGTAGTAGCGCGGGTTAT 58.585 45.455 8.83 0.00 0.00 1.89
2536 10306 2.849942 TGATAGTAGTAGCGCGGGTTA 58.150 47.619 8.83 0.00 0.00 2.85
2537 10307 1.683943 TGATAGTAGTAGCGCGGGTT 58.316 50.000 8.83 0.00 0.00 4.11
2538 10308 1.336125 GTTGATAGTAGTAGCGCGGGT 59.664 52.381 8.83 0.00 0.00 5.28
2539 10309 1.607628 AGTTGATAGTAGTAGCGCGGG 59.392 52.381 8.83 0.00 0.00 6.13
2540 10310 3.351020 AAGTTGATAGTAGTAGCGCGG 57.649 47.619 8.83 0.00 0.00 6.46
2541 10311 5.093169 ACTAAGTTGATAGTAGTAGCGCG 57.907 43.478 0.00 0.00 34.40 6.86
2549 10319 6.484643 CCCACGCTACTACTAAGTTGATAGTA 59.515 42.308 7.49 7.49 37.34 1.82
2550 10320 5.298777 CCCACGCTACTACTAAGTTGATAGT 59.701 44.000 6.24 6.24 39.41 2.12
2551 10321 5.298777 ACCCACGCTACTACTAAGTTGATAG 59.701 44.000 0.00 0.00 37.15 2.08
2552 10322 5.195940 ACCCACGCTACTACTAAGTTGATA 58.804 41.667 0.00 0.00 37.15 2.15
2553 10323 4.021916 ACCCACGCTACTACTAAGTTGAT 58.978 43.478 0.00 0.00 37.15 2.57
2554 10324 3.424703 ACCCACGCTACTACTAAGTTGA 58.575 45.455 0.00 0.00 37.15 3.18
2555 10325 3.863142 ACCCACGCTACTACTAAGTTG 57.137 47.619 0.00 0.00 37.15 3.16
2556 10326 4.879197 AAACCCACGCTACTACTAAGTT 57.121 40.909 0.00 0.00 37.15 2.66
2557 10327 7.416777 GGTTATAAACCCACGCTACTACTAAGT 60.417 40.741 0.00 0.00 46.12 2.24
2558 10328 6.920210 GGTTATAAACCCACGCTACTACTAAG 59.080 42.308 0.00 0.00 46.12 2.18
2559 10329 6.805713 GGTTATAAACCCACGCTACTACTAA 58.194 40.000 0.00 0.00 46.12 2.24
2560 10330 6.391227 GGTTATAAACCCACGCTACTACTA 57.609 41.667 0.00 0.00 46.12 1.82
2561 10331 5.268118 GGTTATAAACCCACGCTACTACT 57.732 43.478 0.00 0.00 46.12 2.57
2574 10344 3.969899 AGTAGTAGCGCGGGTTATAAAC 58.030 45.455 8.83 0.00 0.00 2.01
2575 10345 5.335897 CCATAGTAGTAGCGCGGGTTATAAA 60.336 44.000 8.83 0.00 0.00 1.40
2576 10346 4.156556 CCATAGTAGTAGCGCGGGTTATAA 59.843 45.833 8.83 0.00 0.00 0.98
2577 10347 3.691118 CCATAGTAGTAGCGCGGGTTATA 59.309 47.826 8.83 0.00 0.00 0.98
2578 10348 2.490903 CCATAGTAGTAGCGCGGGTTAT 59.509 50.000 8.83 0.00 0.00 1.89
2579 10349 1.881973 CCATAGTAGTAGCGCGGGTTA 59.118 52.381 8.83 0.00 0.00 2.85
2580 10350 0.672342 CCATAGTAGTAGCGCGGGTT 59.328 55.000 8.83 0.00 0.00 4.11
2581 10351 1.803366 GCCATAGTAGTAGCGCGGGT 61.803 60.000 8.83 0.00 0.00 5.28
2582 10352 1.080705 GCCATAGTAGTAGCGCGGG 60.081 63.158 8.83 0.00 0.00 6.13
2583 10353 0.387367 CAGCCATAGTAGTAGCGCGG 60.387 60.000 8.83 0.00 0.00 6.46
2584 10354 0.387367 CCAGCCATAGTAGTAGCGCG 60.387 60.000 0.00 0.00 0.00 6.86
2585 10355 0.674534 ACCAGCCATAGTAGTAGCGC 59.325 55.000 0.00 0.00 0.00 5.92
2586 10356 1.269998 GGACCAGCCATAGTAGTAGCG 59.730 57.143 0.00 0.00 36.34 4.26
2587 10357 1.619332 GGGACCAGCCATAGTAGTAGC 59.381 57.143 0.00 0.00 38.95 3.58
2588 10358 1.887198 CGGGACCAGCCATAGTAGTAG 59.113 57.143 0.00 0.00 38.95 2.57
2589 10359 1.496001 TCGGGACCAGCCATAGTAGTA 59.504 52.381 0.00 0.00 38.95 1.82
2590 10360 0.260816 TCGGGACCAGCCATAGTAGT 59.739 55.000 0.00 0.00 38.95 2.73
2591 10361 0.962489 CTCGGGACCAGCCATAGTAG 59.038 60.000 0.00 0.00 38.95 2.57
2592 10362 0.469331 CCTCGGGACCAGCCATAGTA 60.469 60.000 0.00 0.00 38.95 1.82
2593 10363 1.762460 CCTCGGGACCAGCCATAGT 60.762 63.158 0.00 0.00 38.95 2.12
2594 10364 2.511452 CCCTCGGGACCAGCCATAG 61.511 68.421 0.00 0.00 38.95 2.23
2595 10365 2.445845 CCCTCGGGACCAGCCATA 60.446 66.667 0.00 0.00 38.95 2.74
2607 10377 0.391927 TATTTTCACCGTGCCCCTCG 60.392 55.000 0.00 0.00 0.00 4.63
2608 10378 1.471287 GTTATTTTCACCGTGCCCCTC 59.529 52.381 0.00 0.00 0.00 4.30
2609 10379 1.074889 AGTTATTTTCACCGTGCCCCT 59.925 47.619 0.00 0.00 0.00 4.79
2610 10380 1.541379 AGTTATTTTCACCGTGCCCC 58.459 50.000 0.00 0.00 0.00 5.80
2611 10381 3.754850 ACTAAGTTATTTTCACCGTGCCC 59.245 43.478 0.00 0.00 0.00 5.36
2612 10382 5.640783 ACTACTAAGTTATTTTCACCGTGCC 59.359 40.000 0.00 0.00 29.00 5.01
2613 10383 6.716898 ACTACTAAGTTATTTTCACCGTGC 57.283 37.500 0.00 0.00 29.00 5.34
2614 10384 7.253552 CGCTACTACTAAGTTATTTTCACCGTG 60.254 40.741 0.00 0.00 37.15 4.94
2615 10385 6.749118 CGCTACTACTAAGTTATTTTCACCGT 59.251 38.462 0.00 0.00 37.15 4.83
2616 10386 6.291479 GCGCTACTACTAAGTTATTTTCACCG 60.291 42.308 0.00 0.00 37.15 4.94
2617 10387 6.291479 CGCGCTACTACTAAGTTATTTTCACC 60.291 42.308 5.56 0.00 37.15 4.02
2618 10388 6.291479 CCGCGCTACTACTAAGTTATTTTCAC 60.291 42.308 5.56 0.00 37.15 3.18
2619 10389 5.745294 CCGCGCTACTACTAAGTTATTTTCA 59.255 40.000 5.56 0.00 37.15 2.69
2620 10390 5.174579 CCCGCGCTACTACTAAGTTATTTTC 59.825 44.000 5.56 0.00 37.15 2.29
2621 10391 5.045872 CCCGCGCTACTACTAAGTTATTTT 58.954 41.667 5.56 0.00 37.15 1.82
2622 10392 4.098501 ACCCGCGCTACTACTAAGTTATTT 59.901 41.667 5.56 0.00 37.15 1.40
2623 10393 3.633986 ACCCGCGCTACTACTAAGTTATT 59.366 43.478 5.56 0.00 37.15 1.40
2624 10394 3.217626 ACCCGCGCTACTACTAAGTTAT 58.782 45.455 5.56 0.00 37.15 1.89
2625 10395 2.643551 ACCCGCGCTACTACTAAGTTA 58.356 47.619 5.56 0.00 37.15 2.24
2626 10396 1.467920 ACCCGCGCTACTACTAAGTT 58.532 50.000 5.56 0.00 37.15 2.66
2627 10397 1.467920 AACCCGCGCTACTACTAAGT 58.532 50.000 5.56 0.00 39.91 2.24
2628 10398 3.911661 ATAACCCGCGCTACTACTAAG 57.088 47.619 5.56 0.00 0.00 2.18
2629 10399 5.507315 GGTTTATAACCCGCGCTACTACTAA 60.507 44.000 5.56 0.00 46.12 2.24
2630 10400 4.023193 GGTTTATAACCCGCGCTACTACTA 60.023 45.833 5.56 0.00 46.12 1.82
2631 10401 3.243535 GGTTTATAACCCGCGCTACTACT 60.244 47.826 5.56 0.00 46.12 2.57
2632 10402 3.052745 GGTTTATAACCCGCGCTACTAC 58.947 50.000 5.56 0.00 46.12 2.73
2633 10403 3.369546 GGTTTATAACCCGCGCTACTA 57.630 47.619 5.56 0.00 46.12 1.82
2634 10404 2.229675 GGTTTATAACCCGCGCTACT 57.770 50.000 5.56 0.00 46.12 2.57
2644 10414 3.969899 AGTAGTAGCGCGGGTTTATAAC 58.030 45.455 8.83 0.00 0.00 1.89
2645 10415 5.473162 TGATAGTAGTAGCGCGGGTTTATAA 59.527 40.000 8.83 0.00 0.00 0.98
2646 10416 5.003160 TGATAGTAGTAGCGCGGGTTTATA 58.997 41.667 8.83 0.00 0.00 0.98
2647 10417 3.822735 TGATAGTAGTAGCGCGGGTTTAT 59.177 43.478 8.83 0.00 0.00 1.40
2648 10418 3.213506 TGATAGTAGTAGCGCGGGTTTA 58.786 45.455 8.83 0.00 0.00 2.01
2649 10419 2.026641 TGATAGTAGTAGCGCGGGTTT 58.973 47.619 8.83 0.00 0.00 3.27
2650 10420 1.683943 TGATAGTAGTAGCGCGGGTT 58.316 50.000 8.83 0.00 0.00 4.11
2651 10421 1.336125 GTTGATAGTAGTAGCGCGGGT 59.664 52.381 8.83 0.00 0.00 5.28
2652 10422 1.607628 AGTTGATAGTAGTAGCGCGGG 59.392 52.381 8.83 0.00 0.00 6.13
2653 10423 3.351020 AAGTTGATAGTAGTAGCGCGG 57.649 47.619 8.83 0.00 0.00 6.46
2654 10424 5.093169 ACTAAGTTGATAGTAGTAGCGCG 57.907 43.478 0.00 0.00 34.40 6.86
2662 10432 7.876371 ACCCCACTACTACTAAGTTGATAGTA 58.124 38.462 7.49 7.49 37.34 1.82
2663 10433 6.739664 ACCCCACTACTACTAAGTTGATAGT 58.260 40.000 6.24 6.24 39.41 2.12
2664 10434 7.657023 AACCCCACTACTACTAAGTTGATAG 57.343 40.000 0.00 0.00 37.15 2.08
2665 10435 9.719433 ATAAACCCCACTACTACTAAGTTGATA 57.281 33.333 0.00 0.00 37.15 2.15
2666 10436 6.947376 AAACCCCACTACTACTAAGTTGAT 57.053 37.500 0.00 0.00 37.15 2.57
2667 10437 9.545928 TTATAAACCCCACTACTACTAAGTTGA 57.454 33.333 0.00 0.00 37.15 3.18
2686 10456 7.976175 ACTTAGTAGTAGCGTGGGTTTATAAAC 59.024 37.037 18.30 18.30 33.78 2.01
2687 10457 8.066612 ACTTAGTAGTAGCGTGGGTTTATAAA 57.933 34.615 0.00 0.00 31.21 1.40
2688 10458 7.645058 ACTTAGTAGTAGCGTGGGTTTATAA 57.355 36.000 0.00 0.00 31.21 0.98
2689 10459 8.383318 CTACTTAGTAGTAGCGTGGGTTTATA 57.617 38.462 11.01 0.00 45.33 0.98
2690 10460 7.269477 CTACTTAGTAGTAGCGTGGGTTTAT 57.731 40.000 11.01 0.00 45.33 1.40
2691 10461 6.683974 CTACTTAGTAGTAGCGTGGGTTTA 57.316 41.667 11.01 0.00 45.33 2.01
2692 10462 5.573337 CTACTTAGTAGTAGCGTGGGTTT 57.427 43.478 11.01 0.00 45.33 3.27
2702 10472 5.295950 CCTCGCTACTGCTACTTAGTAGTA 58.704 45.833 19.12 14.50 45.44 1.82
2704 10474 3.499157 CCCTCGCTACTGCTACTTAGTAG 59.501 52.174 14.56 14.56 46.57 2.57
2705 10475 3.118112 ACCCTCGCTACTGCTACTTAGTA 60.118 47.826 0.00 0.00 36.97 1.82
2706 10476 2.299521 CCCTCGCTACTGCTACTTAGT 58.700 52.381 0.00 0.00 36.97 2.24
2707 10477 2.299521 ACCCTCGCTACTGCTACTTAG 58.700 52.381 0.00 0.00 36.97 2.18
2708 10478 2.431954 ACCCTCGCTACTGCTACTTA 57.568 50.000 0.00 0.00 36.97 2.24
2709 10479 1.558233 AACCCTCGCTACTGCTACTT 58.442 50.000 0.00 0.00 36.97 2.24
2710 10480 2.431954 TAACCCTCGCTACTGCTACT 57.568 50.000 0.00 0.00 36.97 2.57
2711 10481 4.843220 TTATAACCCTCGCTACTGCTAC 57.157 45.455 0.00 0.00 36.97 3.58
2712 10482 4.038402 GGTTTATAACCCTCGCTACTGCTA 59.962 45.833 0.00 0.00 46.12 3.49
2713 10483 3.181468 GGTTTATAACCCTCGCTACTGCT 60.181 47.826 0.00 0.00 46.12 4.24
2714 10484 3.129109 GGTTTATAACCCTCGCTACTGC 58.871 50.000 0.00 0.00 46.12 4.40
2726 10496 6.419116 GCTTACTAGTAGCGTGGGTTTATAAC 59.581 42.308 2.23 0.00 0.00 1.89
2727 10497 6.507023 GCTTACTAGTAGCGTGGGTTTATAA 58.493 40.000 2.23 0.00 0.00 0.98
2728 10498 5.277974 CGCTTACTAGTAGCGTGGGTTTATA 60.278 44.000 25.55 1.68 45.59 0.98
2729 10499 4.498682 CGCTTACTAGTAGCGTGGGTTTAT 60.499 45.833 25.55 0.00 45.59 1.40
2730 10500 3.181497 CGCTTACTAGTAGCGTGGGTTTA 60.181 47.826 25.55 2.26 45.59 2.01
2731 10501 2.416431 CGCTTACTAGTAGCGTGGGTTT 60.416 50.000 25.55 0.00 45.59 3.27
2732 10502 1.133790 CGCTTACTAGTAGCGTGGGTT 59.866 52.381 25.55 0.00 45.59 4.11
2733 10503 0.737219 CGCTTACTAGTAGCGTGGGT 59.263 55.000 25.55 0.00 45.59 4.51
2734 10504 3.546407 CGCTTACTAGTAGCGTGGG 57.454 57.895 25.55 13.69 45.59 4.61
2739 10509 5.927954 ATAGACAGACGCTTACTAGTAGC 57.072 43.478 2.23 8.21 0.00 3.58
2740 10510 7.385752 AGCTTATAGACAGACGCTTACTAGTAG 59.614 40.741 2.23 0.00 0.00 2.57
2741 10511 7.215789 AGCTTATAGACAGACGCTTACTAGTA 58.784 38.462 0.00 0.00 0.00 1.82
2742 10512 6.056884 AGCTTATAGACAGACGCTTACTAGT 58.943 40.000 0.00 0.00 0.00 2.57
2743 10513 6.548441 AGCTTATAGACAGACGCTTACTAG 57.452 41.667 0.00 0.00 0.00 2.57
2744 10514 6.939132 AAGCTTATAGACAGACGCTTACTA 57.061 37.500 0.00 0.00 36.10 1.82
2745 10515 5.838531 AAGCTTATAGACAGACGCTTACT 57.161 39.130 0.00 0.00 36.10 2.24
2746 10516 6.019720 GGAAAAGCTTATAGACAGACGCTTAC 60.020 42.308 0.00 0.00 36.78 2.34
2747 10517 6.040878 GGAAAAGCTTATAGACAGACGCTTA 58.959 40.000 0.00 0.00 36.78 3.09
2748 10518 4.870991 GGAAAAGCTTATAGACAGACGCTT 59.129 41.667 0.00 0.00 39.16 4.68
2749 10519 4.434520 GGAAAAGCTTATAGACAGACGCT 58.565 43.478 0.00 0.00 0.00 5.07
2750 10520 3.556365 GGGAAAAGCTTATAGACAGACGC 59.444 47.826 0.00 0.00 0.00 5.19
2751 10521 5.012328 AGGGAAAAGCTTATAGACAGACG 57.988 43.478 0.00 0.00 0.00 4.18
2752 10522 7.114866 ACTAGGGAAAAGCTTATAGACAGAC 57.885 40.000 0.00 0.00 0.00 3.51
2753 10523 8.060075 ACTACTAGGGAAAAGCTTATAGACAGA 58.940 37.037 0.00 0.00 0.00 3.41
2754 10524 8.138712 CACTACTAGGGAAAAGCTTATAGACAG 58.861 40.741 0.00 0.00 0.00 3.51
2755 10525 7.618512 ACACTACTAGGGAAAAGCTTATAGACA 59.381 37.037 0.00 0.00 0.00 3.41
2756 10526 8.009622 ACACTACTAGGGAAAAGCTTATAGAC 57.990 38.462 0.00 0.00 0.00 2.59
2757 10527 8.605325 AACACTACTAGGGAAAAGCTTATAGA 57.395 34.615 0.00 0.00 0.00 1.98
2758 10528 8.475639 TGAACACTACTAGGGAAAAGCTTATAG 58.524 37.037 0.00 0.49 0.00 1.31
2759 10529 8.370266 TGAACACTACTAGGGAAAAGCTTATA 57.630 34.615 0.00 0.00 0.00 0.98
2760 10530 7.253905 TGAACACTACTAGGGAAAAGCTTAT 57.746 36.000 0.00 0.00 0.00 1.73
2761 10531 6.675413 TGAACACTACTAGGGAAAAGCTTA 57.325 37.500 0.00 0.00 0.00 3.09
2762 10532 5.562298 TGAACACTACTAGGGAAAAGCTT 57.438 39.130 0.00 0.00 0.00 3.74
2763 10533 5.763876 ATGAACACTACTAGGGAAAAGCT 57.236 39.130 0.00 0.00 0.00 3.74
2764 10534 6.875076 TCTATGAACACTACTAGGGAAAAGC 58.125 40.000 0.00 0.00 0.00 3.51
2774 10544 9.539825 CTGCTCAAATAATCTATGAACACTACT 57.460 33.333 0.00 0.00 0.00 2.57
2775 10545 9.534565 TCTGCTCAAATAATCTATGAACACTAC 57.465 33.333 0.00 0.00 0.00 2.73
2781 10551 9.676861 CCCATATCTGCTCAAATAATCTATGAA 57.323 33.333 0.00 0.00 0.00 2.57
2782 10552 8.829746 ACCCATATCTGCTCAAATAATCTATGA 58.170 33.333 0.00 0.00 0.00 2.15
2810 10580 9.990360 TCACACTTGTGTTTCATTAAGTAGATA 57.010 29.630 9.16 0.00 45.76 1.98
2811 10581 8.902540 TCACACTTGTGTTTCATTAAGTAGAT 57.097 30.769 9.16 0.00 45.76 1.98
2812 10582 8.725405 TTCACACTTGTGTTTCATTAAGTAGA 57.275 30.769 9.16 0.00 45.76 2.59
2813 10583 9.221775 GTTTCACACTTGTGTTTCATTAAGTAG 57.778 33.333 9.16 0.00 45.76 2.57
2814 10584 8.731605 TGTTTCACACTTGTGTTTCATTAAGTA 58.268 29.630 9.16 0.00 45.76 2.24
2815 10585 7.598278 TGTTTCACACTTGTGTTTCATTAAGT 58.402 30.769 9.16 0.00 45.76 2.24
2816 10586 8.633075 ATGTTTCACACTTGTGTTTCATTAAG 57.367 30.769 9.16 0.00 45.76 1.85
2817 10587 8.994429 AATGTTTCACACTTGTGTTTCATTAA 57.006 26.923 17.63 2.04 45.76 1.40
2818 10588 8.867935 CAAATGTTTCACACTTGTGTTTCATTA 58.132 29.630 18.53 0.00 45.76 1.90
2819 10589 7.601886 TCAAATGTTTCACACTTGTGTTTCATT 59.398 29.630 9.16 13.18 45.76 2.57
2820 10590 7.095910 TCAAATGTTTCACACTTGTGTTTCAT 58.904 30.769 9.16 8.90 45.76 2.57
2821 10591 6.450545 TCAAATGTTTCACACTTGTGTTTCA 58.549 32.000 9.16 7.24 45.76 2.69
2822 10592 6.942886 TCAAATGTTTCACACTTGTGTTTC 57.057 33.333 9.16 2.38 45.76 2.78
2823 10593 7.721286 TTTCAAATGTTTCACACTTGTGTTT 57.279 28.000 9.16 0.00 45.76 2.83
2824 10594 7.440856 ACTTTTCAAATGTTTCACACTTGTGTT 59.559 29.630 9.16 0.00 45.76 3.32
2825 10595 6.928492 ACTTTTCAAATGTTTCACACTTGTGT 59.072 30.769 9.16 0.00 45.76 3.72
2826 10596 7.350110 ACTTTTCAAATGTTTCACACTTGTG 57.650 32.000 2.75 2.75 46.91 3.33
2827 10597 7.655328 TGAACTTTTCAAATGTTTCACACTTGT 59.345 29.630 3.11 0.00 36.75 3.16
2828 10598 8.016497 TGAACTTTTCAAATGTTTCACACTTG 57.984 30.769 3.11 0.00 36.73 3.16
2829 10599 8.600449 TTGAACTTTTCAAATGTTTCACACTT 57.400 26.923 3.11 0.00 45.94 3.16
2843 10613 9.177608 TCTCTCTGAAATTCTTTGAACTTTTCA 57.822 29.630 0.00 8.07 38.04 2.69
2846 10616 9.183368 ACTTCTCTCTGAAATTCTTTGAACTTT 57.817 29.630 0.00 0.00 33.79 2.66
2847 10617 8.619546 CACTTCTCTCTGAAATTCTTTGAACTT 58.380 33.333 0.00 0.00 33.79 2.66
2848 10618 7.228308 CCACTTCTCTCTGAAATTCTTTGAACT 59.772 37.037 0.00 0.00 33.79 3.01
2849 10619 7.358830 CCACTTCTCTCTGAAATTCTTTGAAC 58.641 38.462 0.00 0.00 33.79 3.18
2850 10620 6.488006 CCCACTTCTCTCTGAAATTCTTTGAA 59.512 38.462 0.00 0.00 33.79 2.69
2851 10621 6.000219 CCCACTTCTCTCTGAAATTCTTTGA 59.000 40.000 0.00 0.00 33.79 2.69
2852 10622 5.182760 CCCCACTTCTCTCTGAAATTCTTTG 59.817 44.000 0.00 0.00 33.79 2.77
2853 10623 5.073691 TCCCCACTTCTCTCTGAAATTCTTT 59.926 40.000 0.00 0.00 33.79 2.52
2854 10624 4.599241 TCCCCACTTCTCTCTGAAATTCTT 59.401 41.667 0.00 0.00 33.79 2.52
2855 10625 4.171234 TCCCCACTTCTCTCTGAAATTCT 58.829 43.478 0.00 0.00 33.79 2.40
2856 10626 4.559862 TCCCCACTTCTCTCTGAAATTC 57.440 45.455 0.00 0.00 33.79 2.17
2857 10627 5.014544 TGATTCCCCACTTCTCTCTGAAATT 59.985 40.000 0.00 0.00 33.79 1.82
2858 10628 4.537688 TGATTCCCCACTTCTCTCTGAAAT 59.462 41.667 0.00 0.00 33.79 2.17
2859 10629 3.909995 TGATTCCCCACTTCTCTCTGAAA 59.090 43.478 0.00 0.00 33.79 2.69
2860 10630 3.520696 TGATTCCCCACTTCTCTCTGAA 58.479 45.455 0.00 0.00 0.00 3.02
2861 10631 3.190383 TGATTCCCCACTTCTCTCTGA 57.810 47.619 0.00 0.00 0.00 3.27
2862 10632 3.492309 CGATGATTCCCCACTTCTCTCTG 60.492 52.174 0.00 0.00 0.00 3.35
2863 10633 2.697751 CGATGATTCCCCACTTCTCTCT 59.302 50.000 0.00 0.00 0.00 3.10
2864 10634 2.432510 ACGATGATTCCCCACTTCTCTC 59.567 50.000 0.00 0.00 0.00 3.20
2865 10635 2.472029 ACGATGATTCCCCACTTCTCT 58.528 47.619 0.00 0.00 0.00 3.10
2866 10636 2.990066 ACGATGATTCCCCACTTCTC 57.010 50.000 0.00 0.00 0.00 2.87
2867 10637 3.517901 TGTTACGATGATTCCCCACTTCT 59.482 43.478 0.00 0.00 0.00 2.85
2868 10638 3.869065 TGTTACGATGATTCCCCACTTC 58.131 45.455 0.00 0.00 0.00 3.01
2869 10639 3.992943 TGTTACGATGATTCCCCACTT 57.007 42.857 0.00 0.00 0.00 3.16
2870 10640 3.517901 TCTTGTTACGATGATTCCCCACT 59.482 43.478 0.00 0.00 0.00 4.00
2871 10641 3.869065 TCTTGTTACGATGATTCCCCAC 58.131 45.455 0.00 0.00 0.00 4.61
2872 10642 4.561500 TTCTTGTTACGATGATTCCCCA 57.438 40.909 0.00 0.00 0.00 4.96
2873 10643 5.890424 TTTTCTTGTTACGATGATTCCCC 57.110 39.130 0.00 0.00 0.00 4.81
2874 10644 9.503427 CTTTATTTTCTTGTTACGATGATTCCC 57.497 33.333 0.00 0.00 0.00 3.97
2893 10663 8.491152 CGCGATCAGATCATAGAAACTTTATTT 58.509 33.333 11.12 0.00 0.00 1.40
2894 10664 7.867909 TCGCGATCAGATCATAGAAACTTTATT 59.132 33.333 3.71 0.00 0.00 1.40
2895 10665 7.371159 TCGCGATCAGATCATAGAAACTTTAT 58.629 34.615 3.71 0.00 0.00 1.40
2896 10666 6.735130 TCGCGATCAGATCATAGAAACTTTA 58.265 36.000 3.71 0.00 0.00 1.85
2897 10667 5.592054 TCGCGATCAGATCATAGAAACTTT 58.408 37.500 3.71 0.00 0.00 2.66
2898 10668 5.188327 TCGCGATCAGATCATAGAAACTT 57.812 39.130 3.71 0.00 0.00 2.66
2899 10669 4.837896 TCGCGATCAGATCATAGAAACT 57.162 40.909 3.71 0.00 0.00 2.66
2900 10670 4.384247 CCTTCGCGATCAGATCATAGAAAC 59.616 45.833 10.88 0.00 0.00 2.78
2901 10671 4.550422 CCTTCGCGATCAGATCATAGAAA 58.450 43.478 10.88 0.00 0.00 2.52
2902 10672 3.612717 GCCTTCGCGATCAGATCATAGAA 60.613 47.826 10.88 10.54 0.00 2.10
2903 10673 2.095008 GCCTTCGCGATCAGATCATAGA 60.095 50.000 10.88 3.65 0.00 1.98
2904 10674 2.257894 GCCTTCGCGATCAGATCATAG 58.742 52.381 10.88 0.00 0.00 2.23
2905 10675 2.354109 GCCTTCGCGATCAGATCATA 57.646 50.000 10.88 0.00 0.00 2.15
2906 10676 3.207677 GCCTTCGCGATCAGATCAT 57.792 52.632 10.88 0.00 0.00 2.45
2907 10677 4.738198 GCCTTCGCGATCAGATCA 57.262 55.556 10.88 0.00 0.00 2.92
2917 10687 3.675467 AACTCAAATATTCGCCTTCGC 57.325 42.857 0.00 0.00 35.26 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.